Query 033715
Match_columns 113
No_of_seqs 135 out of 199
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xu2_R Tumor necrosis factor r 38.0 13 0.00045 23.0 1.3 21 58-78 19-39 (47)
2 2h9e_C Anti-coagulant protein 31.2 3.9 0.00013 26.8 -2.0 48 53-104 13-77 (84)
3 1nsc_A Neuraminidase; hydrolas 28.6 8.5 0.00029 32.6 -0.9 14 87-100 191-204 (390)
4 2htq_A Neuraminidase; zanamivi 26.2 26 0.0009 29.7 1.6 17 87-103 187-203 (390)
5 1dec_A Decorsin; blood coagula 24.1 18 0.0006 21.5 0.1 6 93-98 18-23 (39)
6 3tje_F Tumor necrosis factor r 22.9 28 0.00097 25.0 1.1 23 77-102 41-72 (156)
7 3arc_H Photosystem II reaction 22.7 81 0.0028 20.6 3.1 12 10-21 36-47 (65)
8 4i62_A Amino acid ABC transpor 20.9 21 0.00071 24.3 0.0 12 1-12 2-13 (269)
9 1v0z_A Neuraminidase; glycosid 20.5 21 0.00072 30.3 -0.0 17 87-103 188-204 (389)
10 1f8d_A Neuraminidase; hydrolas 20.2 22 0.00074 30.2 -0.0 17 87-103 188-204 (388)
No 1
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=38.01 E-value=13 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.817 Sum_probs=17.6
Q ss_pred HhhHHhhcCCCCChHHHHHHH
Q 033715 58 KCHYRCSATSYKKPCLFFCQK 78 (113)
Q Consensus 58 ~C~~RCs~~~~~~~C~~~C~~ 78 (113)
-|..||+.++.+..|-.||..
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHHC
T ss_pred chhcccCCCCCcchHHHHHhh
Confidence 388999977788899999963
No 2
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=31.24 E-value=3.9 Score=26.78 Aligned_cols=48 Identities=29% Similarity=0.740 Sum_probs=20.4
Q ss_pred CCChh-HhhHHhhcC-------CC-CChH-HHHHHHhccCccccCCCCCCCC-------CCCCcccccc
Q 033715 53 QECAP-KCHYRCSAT-------SY-KKPC-LFFCQKCCAKCLCVPAGTYGNK-------QTCPCYNNWK 104 (113)
Q Consensus 53 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~kC~CVP~GtyGnk-------~~CPCY~~m~ 104 (113)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-.
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~ 77 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDF 77 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEE
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCe
Confidence 57999 999999863 12 3678 66665 577785 4888774 4688876543
No 3
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=28.57 E-value=8.5 Score=32.64 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCcc
Q 033715 87 PAGTYGNKQTCPCY 100 (113)
Q Consensus 87 P~GtyGnk~~CPCY 100 (113)
.+|+.+|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 35788889999999
No 4
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=26.21 E-value=26 Score=29.71 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCccccc
Q 033715 87 PAGTYGNKQTCPCYNNW 103 (113)
Q Consensus 87 P~GtyGnk~~CPCY~~m 103 (113)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888899999999654
No 5
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=24.09 E-value=18 Score=21.48 Aligned_cols=6 Identities=67% Similarity=1.492 Sum_probs=3.7
Q ss_pred CCCCCC
Q 033715 93 NKQTCP 98 (113)
Q Consensus 93 nk~~CP 98 (113)
||+|||
T Consensus 18 nkdecp 23 (39)
T 1dec_A 18 NKDECP 23 (39)
T ss_dssp SSSEEC
T ss_pred cCCCCC
Confidence 566665
No 6
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=22.94 E-value=28 Score=25.03 Aligned_cols=23 Identities=35% Similarity=0.905 Sum_probs=14.2
Q ss_pred HHhccCccccCCCCCCC--------CCCC-Ccccc
Q 033715 77 QKCCAKCLCVPAGTYGN--------KQTC-PCYNN 102 (113)
Q Consensus 77 ~~CC~kC~CVP~GtyGn--------k~~C-PCY~~ 102 (113)
+.||.+| |||||=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4566666 6787732 3567 77665
No 7
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=22.66 E-value=81 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 033715 10 LFVALMLVLVAQ 21 (113)
Q Consensus 10 ~~l~~~~l~~~~ 21 (113)
+|++++++++++
T Consensus 36 Lf~vFl~iiLeI 47 (65)
T 3arc_H 36 LFLVFLLIILEI 47 (65)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 8
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=20.88 E-value=21 Score=24.26 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHH
Q 033715 1 MARMLRLVVLFV 12 (113)
Q Consensus 1 Ma~~~~~~~~~l 12 (113)
|.+|.+++++++
T Consensus 2 M~~m~~~~~~~~ 13 (269)
T 4i62_A 2 MNKMKKVLMTMF 13 (269)
T ss_dssp ------------
T ss_pred cHHHHHHHHHHH
Confidence 556656555443
No 9
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=20.50 E-value=21 Score=30.26 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCccccc
Q 033715 87 PAGTYGNKQTCPCYNNW 103 (113)
Q Consensus 87 P~GtyGnk~~CPCY~~m 103 (113)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 46888999999999764
No 10
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=20.22 E-value=22 Score=30.20 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCccccc
Q 033715 87 PAGTYGNKQTCPCYNNW 103 (113)
Q Consensus 87 P~GtyGnk~~CPCY~~m 103 (113)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888899999999754
Done!