Query 033715
Match_columns 113
No_of_seqs 135 out of 199
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 08:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 59.2 0.55 4E-05 28.8 -1.1 53 53-106 8-74 (78)
2 d1xu2r_ g.24.1.2 (R:) Tumor ne 54.7 2.5 0.00018 23.6 1.3 20 58-77 16-35 (36)
3 d1jv2b5 g.3.11.6 (B:563-605) I 50.6 2.4 0.00017 24.3 0.8 19 80-98 21-40 (43)
4 d1exta1 g.24.1.1 (A:13-71) Tum 49.6 1.7 0.00012 25.5 0.0 25 78-105 16-49 (59)
5 d2aepa1 b.68.1.1 (A:83-469) In 28.9 5.5 0.0004 31.8 -0.0 18 86-103 185-202 (387)
6 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 27.2 1.2 8.5E-05 26.3 -3.4 37 52-92 10-46 (60)
7 d1f8ea_ b.68.1.1 (A:) Influenz 26.3 6.6 0.00048 31.3 -0.0 17 87-103 188-204 (388)
8 d1deca_ g.3.15.2 (A:) Decorsin 24.1 8.2 0.0006 21.5 0.1 6 93-98 18-23 (39)
9 d2c7na1 g.39.1.15 (A:18-73) Ra 23.5 6.4 0.00047 23.7 -0.5 16 89-104 7-26 (56)
10 d2heyr3 g.24.1.1 (R:29-82) Tum 19.6 7 0.00051 22.5 -0.9 26 77-105 12-45 (54)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=59.22 E-value=0.55 Score=28.83 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCChh-HhhHHhhcCCCCChHHHHHHH------hccCccccCCCCCCCCC-------CCCcccccccC
Q 033715 53 QECAP-KCHYRCSATSYKKPCLFFCQK------CCAKCLCVPAGTYGNKQ-------TCPCYNNWKTK 106 (113)
Q Consensus 53 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~kC~CVP~GtyGnk~-------~CPCY~~m~t~ 106 (113)
.+|++ .|..-|+.-.....|...++. |=.-|.| |+|++-|.+ +||||.+=+..
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 46765 477777765555555555543 3355777 899987653 57998765543
No 2
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.71 E-value=2.5 Score=23.60 Aligned_cols=20 Identities=30% Similarity=0.864 Sum_probs=17.8
Q ss_pred HhhHHhhcCCCCChHHHHHH
Q 033715 58 KCHYRCSATSYKKPCLFFCQ 77 (113)
Q Consensus 58 ~C~~RCs~~~~~~~C~~~C~ 77 (113)
-|.-|||..+-+-.|.+||+
T Consensus 16 pc~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 16 PCQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp EGGGTTTSSSCCGGGHHHHH
T ss_pred cceeecCCCCCchhhhhhcc
Confidence 38899999889999999996
No 3
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.59 E-value=2.4 Score=24.28 Aligned_cols=19 Identities=42% Similarity=1.503 Sum_probs=14.4
Q ss_pred ccCccccCCCCCCCC-CCCC
Q 033715 80 CAKCLCVPAGTYGNK-QTCP 98 (113)
Q Consensus 80 C~kC~CVP~GtyGnk-~~CP 98 (113)
|++|.|-.||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888855 5565
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.59 E-value=1.7 Score=25.54 Aligned_cols=25 Identities=44% Similarity=1.018 Sum_probs=17.1
Q ss_pred HhccCccccCCCCC------C--CCCCC-Cccccccc
Q 033715 78 KCCAKCLCVPAGTY------G--NKQTC-PCYNNWKT 105 (113)
Q Consensus 78 ~CC~kC~CVP~Gty------G--nk~~C-PCY~~m~t 105 (113)
.||.+| ||||| + ..-+| ||-..-.+
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 467775 89988 4 24689 88776544
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=28.94 E-value=5.5 Score=31.76 Aligned_cols=18 Identities=22% Similarity=0.698 Sum_probs=14.9
Q ss_pred cCCCCCCCCCCCCccccc
Q 033715 86 VPAGTYGNKQTCPCYNNW 103 (113)
Q Consensus 86 VP~GtyGnk~~CPCY~~m 103 (113)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367889999999999765
No 6
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=27.22 E-value=1.2 Score=26.30 Aligned_cols=37 Identities=30% Similarity=0.596 Sum_probs=26.5
Q ss_pred CCCChhHhhHHhhcCCCCChHHHHHHHhccCccccCCCCCC
Q 033715 52 HQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYG 92 (113)
Q Consensus 52 ~~~C~~~C~~RCs~~~~~~~C~~~C~~CC~kC~CVP~GtyG 92 (113)
...|+++|..-|+.-.....|.+.|- .-|.| |+|++=
T Consensus 10 y~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~vl 46 (60)
T d1hx2a_ 10 FQTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTVL 46 (60)
T ss_dssp EESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCEE
T ss_pred eCcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEeE
Confidence 35789999999987666666765443 45777 888763
No 7
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=26.28 E-value=6.6 Score=31.31 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCccccc
Q 033715 87 PAGTYGNKQTCPCYNNW 103 (113)
Q Consensus 87 P~GtyGnk~~CPCY~~m 103 (113)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 56888999999999763
No 8
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=24.09 E-value=8.2 Score=21.48 Aligned_cols=6 Identities=67% Similarity=1.492 Sum_probs=3.7
Q ss_pred CCCCCC
Q 033715 93 NKQTCP 98 (113)
Q Consensus 93 nk~~CP 98 (113)
||+|||
T Consensus 18 nkdecp 23 (39)
T d1deca_ 18 NKDECP 23 (39)
T ss_dssp SSSEEC
T ss_pred cCCCCC
Confidence 566665
No 9
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.47 E-value=6.4 Score=23.67 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=12.3
Q ss_pred CCCCC---CCCC-Ccccccc
Q 033715 89 GTYGN---KQTC-PCYNNWK 104 (113)
Q Consensus 89 GtyGn---k~~C-PCY~~m~ 104 (113)
|.||| ...| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 67775 5789 7999874
No 10
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.56 E-value=7 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.910 Sum_probs=16.4
Q ss_pred HHhccCccccCCCCC-------CCCCCC-Cccccccc
Q 033715 77 QKCCAKCLCVPAGTY-------GNKQTC-PCYNNWKT 105 (113)
Q Consensus 77 ~~CC~kC~CVP~Gty-------Gnk~~C-PCY~~m~t 105 (113)
|.||.+| ||||| ...-+| ||-....|
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gtyt 45 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFYN 45 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCcc
Confidence 4677776 78877 344567 77655443
Done!