Query 033716
Match_columns 112
No_of_seqs 189 out of 876
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 7.7E-30 2.6E-34 178.0 12.4 108 4-111 3-110 (153)
2 1yvi_A Histidine-containing ph 100.0 3.2E-28 1.1E-32 168.8 12.4 109 3-111 2-111 (149)
3 2r25_A Phosphorelay intermedia 99.9 1.1E-23 3.9E-28 148.6 10.8 90 17-109 2-93 (167)
4 2a0b_A HPT domain; sensory tra 99.8 3.1E-20 1.1E-24 124.5 6.2 91 16-110 4-94 (125)
5 1y6d_A Phosphorelay protein LU 99.8 2.2E-19 7.5E-24 120.4 4.3 88 20-111 8-95 (120)
6 3myf_A Sensor protein; HPT, hi 99.8 5.1E-18 1.7E-22 113.6 10.5 86 20-110 2-87 (119)
7 3iqt_A Signal transduction his 99.7 1.3E-17 4.5E-22 112.3 9.4 85 21-110 12-96 (123)
8 2ooc_A Histidine phosphotransf 99.6 2.7E-16 9.4E-21 104.3 5.1 77 21-107 8-84 (113)
9 1sr2_A Putative sensor-like hi 99.6 6.1E-16 2.1E-20 103.2 3.9 70 39-110 29-98 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 1.6E-13 5.3E-18 89.1 7.6 65 43-109 3-78 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 3.9E-12 1.3E-16 86.7 8.8 65 44-110 3-78 (139)
12 1i5n_A Chemotaxis protein CHEA 99.3 3.9E-12 1.3E-16 87.4 6.1 65 44-110 6-81 (146)
13 2lch_A Protein OR38; structura 99.3 1E-11 3.6E-16 81.6 7.3 62 44-105 5-72 (113)
14 3kyj_A CHEA3, putative histidi 99.0 1.8E-09 6.1E-14 74.2 7.2 63 43-105 9-77 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 3.2E-08 1.1E-12 72.0 7.9 62 44-105 6-73 (225)
16 3uo3_A J-type CO-chaperone JAC 91.5 0.95 3.3E-05 31.5 7.5 62 20-83 100-161 (181)
17 3bvo_A CO-chaperone protein HS 90.3 1 3.6E-05 31.9 6.8 49 33-83 143-191 (207)
18 3hho_A CO-chaperone protein HS 87.0 3.8 0.00013 28.0 7.7 52 31-84 105-157 (174)
19 1fpo_A HSC20, chaperone protei 82.4 6.8 0.00023 26.7 7.3 51 31-83 102-152 (171)
20 1gp8_A Protein (scaffolding pr 82.0 4 0.00014 21.5 4.6 24 59-84 15-38 (40)
21 2di0_A Activating signal coint 77.8 2.1 7.3E-05 25.6 3.0 42 22-63 11-52 (71)
22 3ls0_A SLL1638 protein, PSBQ; 73.9 5 0.00017 26.8 4.3 33 51-85 32-65 (133)
23 2cw9_A Translocase of inner mi 73.0 20 0.00069 24.7 8.7 80 10-108 24-104 (194)
24 3zsu_A TLL2057 protein, cyanoq 68.0 6 0.00021 26.2 3.7 32 52-85 31-62 (130)
25 2f4m_B UV excision repair prot 63.7 15 0.00051 21.1 4.4 45 26-78 11-55 (61)
26 3do9_A UPF0302 protein BA_1542 51.7 41 0.0014 23.4 5.9 41 41-85 140-180 (188)
27 2p1h_A APAF-1, apoptotic prote 50.9 20 0.00069 21.4 3.7 62 13-78 26-88 (94)
28 2qsf_X RAD23, UV excision repa 47.0 30 0.001 23.8 4.4 38 25-63 32-69 (171)
29 1pve_A HHR23B, UV excision rep 46.6 11 0.00036 22.5 1.8 46 26-79 13-58 (72)
30 3qk9_A Mitochondrial import in 41.9 69 0.0024 22.7 5.9 56 38-108 71-127 (222)
31 1h3o_B Transcription initiatio 34.6 73 0.0025 18.9 6.8 57 8-75 8-64 (76)
32 2gyq_A YCFI, putative structur 34.2 1.1E+02 0.0037 20.7 6.0 58 5-66 11-70 (173)
33 1vyk_A Oxygen-evolving enhance 31.9 44 0.0015 22.4 3.3 29 51-81 52-80 (149)
34 3f0n_A Mevalonate pyrophosphat 29.5 86 0.0029 24.4 5.0 31 46-78 238-269 (414)
35 2hsb_A Hypothetical UPF0332 pr 27.7 1.1E+02 0.0037 18.7 5.6 43 46-90 4-51 (126)
36 2kjg_A Archaeal protein SSO690 27.3 1.1E+02 0.0039 18.8 4.9 34 23-56 3-37 (99)
37 3f4m_A Tumor necrosis factor, 27.0 1.5E+02 0.0051 20.1 6.8 65 4-68 93-159 (161)
38 3l9f_A Putative uncharacterize 26.5 1.6E+02 0.0055 20.3 6.2 58 8-65 110-167 (204)
39 2qrw_A Hemoglobin-like protein 25.9 95 0.0032 19.3 4.0 35 37-74 9-43 (128)
40 2qf9_A Putative secreted prote 24.9 1.6E+02 0.0055 19.8 6.0 52 30-83 100-151 (179)
41 3k1h_A HP1076, putative unchar 24.0 9 0.00031 26.2 -1.3 41 61-105 7-48 (158)
42 3tnf_B LIDA, RAS-related prote 23.7 2.4E+02 0.0082 21.3 7.1 58 28-89 51-108 (384)
43 1wol_A ST0689, 122AA long cons 22.5 1.4E+02 0.0048 18.2 5.2 33 47-81 4-36 (122)
44 3o10_A Sacsin; all-helical dom 22.5 1.6E+02 0.0054 18.9 4.7 34 46-81 8-41 (141)
45 3ygs_P Procaspase 9; apoptosis 22.1 93 0.0032 18.7 3.3 59 16-78 28-89 (97)
46 2vs0_A Virulence factor ESXA; 21.5 71 0.0024 18.4 2.6 21 70-90 6-26 (97)
47 2p06_A Hypothetical protein AF 21.4 1.5E+02 0.0051 18.2 4.3 21 57-79 68-88 (114)
48 2ksc_A Cyanoglobin; hemeprotei 21.1 1.4E+02 0.0049 18.3 4.2 34 38-74 8-41 (123)
49 3k17_A LIN0012 protein; protei 20.8 2.6E+02 0.0089 20.7 6.9 31 48-80 245-275 (365)
50 1ufb_A TT1696 protein; structu 20.3 1.6E+02 0.0054 18.0 4.5 30 49-80 6-35 (127)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=99.97 E-value=7.7e-30 Score=178.03 Aligned_cols=108 Identities=55% Similarity=1.007 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033716 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (112)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
+.+|+.++.+|++|++++|+||++|++|++|.+.++|+|+.++|..|++++++.+..|+.+++.+++|++.+.++||+||
T Consensus 3 ~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 82 (153)
T 3us6_A 3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK 82 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999889999999999999999999999999999988779999999999999
Q ss_pred hhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033716 84 GSSSSIGALRVKNVCIAFRSFCDAQNRE 111 (112)
Q Consensus 84 Gsa~~lGa~~l~~~c~~lE~~~~~~~~~ 111 (112)
|||+++||.+|+.+|..||.+|+.++.+
T Consensus 83 Gss~~lGa~~l~~~c~~lE~~~~~~~~~ 110 (153)
T 3us6_A 83 GSSASIGAQRVKNSCVAFRNFCEEQNID 110 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999865
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.96 E-value=3.2e-28 Score=168.76 Aligned_cols=109 Identities=50% Similarity=0.874 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHhhhhhccCchHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033716 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESS-PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81 (112)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~-~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (112)
+.++|+.|+..+++|+++.|+||.+|++|.+|.++++ |+|+.++|..|+++++..+..|..+++.+++|+..+..++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 81 (149)
T 1yvi_A 2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 5789999999999999999999988999999987778 999999999999999999999999999875689999999999
Q ss_pred hhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033716 82 LKGSSSSIGALRVKNVCIAFRSFCDAQNRE 111 (112)
Q Consensus 82 LKGsa~~lGa~~l~~~c~~lE~~~~~~~~~ 111 (112)
|||||+++||.+|+.+|..||.+|+.++.+
T Consensus 82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~ 111 (149)
T 1yvi_A 82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRD 111 (149)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999998754
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.90 E-value=1.1e-23 Score=148.56 Aligned_cols=90 Identities=23% Similarity=0.408 Sum_probs=85.6
Q ss_pred hhhhccCchH-HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHH
Q 033716 17 SLYREGYVDD-QFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRV 94 (112)
Q Consensus 17 ~~~~~~~ld~-~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~l 94 (112)
||.+.|+||. +|++|++|.+.+ |+|+.++|..|++++++.+..|+.|++ .+ |+..+..++|+|||||++|||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5678899995 899999998766 999999999999999999999999999 77 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 033716 95 KNVCIAFRSFCDAQN 109 (112)
Q Consensus 95 ~~~c~~lE~~~~~~~ 109 (112)
..+|.+||.+|+.++
T Consensus 79 ~~~C~~le~~~r~~n 93 (167)
T 2r25_A 79 AWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999998
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.81 E-value=3.1e-20 Score=124.46 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=81.0
Q ss_pred hhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 033716 16 SSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVK 95 (112)
Q Consensus 16 ~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~ 95 (112)
..+.+.+++|.. .|.+|.+..|++++.+++..|+++++..+..|..++..+ |+..+.+.+|+|||+|+++|+.+|+
T Consensus 4 ~~~~~~~~lD~~--~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~ 79 (125)
T 2a0b_A 4 ENSKSEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ 79 (125)
T ss_dssp --CHHHHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344566788876 777777667899999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 033716 96 NVCIAFRSFCDAQNR 110 (112)
Q Consensus 96 ~~c~~lE~~~~~~~~ 110 (112)
.+|..+|.+++.++.
T Consensus 80 ~~~~~lE~~~~~~~~ 94 (125)
T 2a0b_A 80 QLGQQIQSPDLPAWE 94 (125)
T ss_dssp HHHHHHTCTTSTTHH
T ss_pred HHHHHHHHHHHcCCH
Confidence 999999999887653
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.76 E-value=2.2e-19 Score=120.36 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=79.3
Q ss_pred hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033716 20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI 99 (112)
Q Consensus 20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~ 99 (112)
+.+.+|.. ++.+|++..+++++.+++..|++++++.+..|+.+...+ |...+.+.+|+|||||+++|+.+|+.+|.
T Consensus 8 ~~~~~d~~--~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~ 83 (120)
T 1y6d_A 8 NTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI 83 (120)
T ss_dssp CCTTTTTT--HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CCccccHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHH
Confidence 34555644 888898878899999999999999999999999988888 88899999999999999999999999999
Q ss_pred HHHHHHHhhccC
Q 033716 100 AFRSFCDAQNRE 111 (112)
Q Consensus 100 ~lE~~~~~~~~~ 111 (112)
.+|..+|.|+..
T Consensus 84 ~lE~~~r~g~~~ 95 (120)
T 1y6d_A 84 AIDKKAKANQLQ 95 (120)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHhCCChh
Confidence 999999998754
No 6
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.76 E-value=5.1e-18 Score=113.60 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=77.2
Q ss_pred hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033716 20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI 99 (112)
Q Consensus 20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~ 99 (112)
|..++|-. ....+ ..|++++..+|+.+|+++.+..+..|+.+++.+ |++.+.+++|+|||+|+++|+.+|..+|.
T Consensus 2 ~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~ 76 (119)
T 3myf_A 2 DLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ 76 (119)
T ss_dssp CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 55667744 44444 378999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 033716 100 AFRSFCDAQNR 110 (112)
Q Consensus 100 ~lE~~~~~~~~ 110 (112)
.||.++|.|..
T Consensus 77 ~LE~~~r~~~~ 87 (119)
T 3myf_A 77 EIESALKRQTP 87 (119)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999863
No 7
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.74 E-value=1.3e-17 Score=112.31 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=76.7
Q ss_pred ccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033716 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA 100 (112)
Q Consensus 21 ~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~ 100 (112)
.+++|-+ .+..+ ..|++++..+|+.+|+++.+.++..|+.+++.+ |++.+.+++|+|||+|+++|+.+|..+|..
T Consensus 12 ~~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3456644 45454 478999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 033716 101 FRSFCDAQNR 110 (112)
Q Consensus 101 lE~~~~~~~~ 110 (112)
||.++|.|+.
T Consensus 87 LE~~~r~g~~ 96 (123)
T 3iqt_A 87 IEQQLRSGTK 96 (123)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999864
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.63 E-value=2.7e-16 Score=104.27 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=66.6
Q ss_pred ccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033716 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA 100 (112)
Q Consensus 21 ~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~ 100 (112)
.+.+|-. .|..+ ..++++|+.+++..|+++++.++..|..+ .. || .+++|+|||||++|||.+|..+|..
T Consensus 8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4567755 66655 47899999999999999999999999988 44 76 7999999999999999999999999
Q ss_pred HHHHHHh
Q 033716 101 FRSFCDA 107 (112)
Q Consensus 101 lE~~~~~ 107 (112)
||..++.
T Consensus 78 lE~~~~~ 84 (113)
T 2ooc_A 78 CEAGQES 84 (113)
T ss_dssp HHTTSSC
T ss_pred HHHHhhh
Confidence 9988764
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.59 E-value=6.1e-16 Score=103.18 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033716 39 SPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNR 110 (112)
Q Consensus 39 ~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~~ 110 (112)
.+..-.+++..|+++.++++..|..+++.+ |+..+.+.+|+|||+++++|+.++..+|.+||.+++.++.
T Consensus 29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~ 98 (116)
T 1sr2_A 29 AQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV 98 (116)
T ss_dssp HHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred chhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence 445677899999999999999999999999 9999999999999999999999999999999999998864
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.47 E-value=1.6e-13 Score=89.09 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhc
Q 033716 43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQN 109 (112)
Q Consensus 43 ~~~li~~f~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~---~~~~ 109 (112)
+.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+..+|..+|..+ +.|+
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~ 78 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSE 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999985 34 67899999999999999999999999999999876 5554
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.35 E-value=3.9e-12 Score=86.73 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhcc
Q 033716 44 VEVASLFFDDAEKLINSMARAL--------EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNR 110 (112)
Q Consensus 44 ~~li~~f~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~---~~~~~ 110 (112)
.+++..|++++++.+..|..++ ... ++..+.+.+|+|||+|+++|+..+..+|..+|..+ |.|..
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~ 78 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 78 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999998 355 78999999999999999999999999999999865 55553
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.29 E-value=3.9e-12 Score=87.43 Aligned_cols=65 Identities=17% Similarity=0.372 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HHhhcc
Q 033716 44 VEVASLFFDDAEKLINSMARAL--------EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNR 110 (112)
Q Consensus 44 ~~li~~f~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~---~~~~~~ 110 (112)
.+++..|++++++.+..|+.++ ... ++..+.+.+|+|||+|+++|+..+..+|..+|.. .|.|..
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~ 81 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM 81 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999998 233 5689999999999999999999999999999987 565543
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.28 E-value=1e-11 Score=81.56 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCC---CHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033716 44 VEVASLFFDDAEKLINSMARALEQ---PCV---DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC 105 (112)
Q Consensus 44 ~~li~~f~~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~ 105 (112)
.+++..|++++++.+..|..++.. .|. ++..+.+.+|+|||+|+++|+..+..+|..+|...
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 579999999999999999998732 111 35679999999999999999999999999999743
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=98.96 E-value=1.8e-09 Score=74.16 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033716 43 VVEVASLFFDDAEKLINSMARALE---QPCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC 105 (112)
Q Consensus 43 ~~~li~~f~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~ 105 (112)
..+++..|++++++.++.|...+. +.|.| ...+.+.+|+|||+|+++|+..+..+|..+|...
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll 77 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI 77 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence 468999999999999999998763 33224 3579999999999999999999999999999865
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.74 E-value=3.2e-08 Score=71.98 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033716 44 VEVASLFFDDAEKLINSMARAL---EQPCVDF---KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC 105 (112)
Q Consensus 44 ~~li~~f~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~ 105 (112)
.+++..|++++.+.+..|...+ +..|.|. ..+.+.+|+|||+|+++|+..+.++|..+|...
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l 73 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLL 73 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 4689999999999999999875 3334354 578899999999999999999999999999765
No 16
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=91.54 E-value=0.95 Score=31.45 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=46.5
Q ss_pred hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033716 20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (112)
Q Consensus 20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
+..+|.++++.-++|.+..+.+-+.++....-.........|..++..+ ||+.....+.+||
T Consensus 100 d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 100 DPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK 161 (181)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 3445555544445565555666677888888888888889999999999 9999998888776
No 17
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=90.27 E-value=1 Score=31.92 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=36.6
Q ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033716 33 KLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (112)
Q Consensus 33 ~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
.|.+..+.+-+.++-..+-......+..|..++..+ |++.+...+.+||
T Consensus 143 ~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 143 KLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 344444455566777777777777788889999999 9999998888776
No 18
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=87.00 E-value=3.8 Score=28.03 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=40.6
Q ss_pred HHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 033716 31 LHKLQDESS-PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKG 84 (112)
Q Consensus 31 l~~L~~~~~-~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (112)
|.+.....+ ..-+.++....-......+..|..++..+ ||......+.+||=
T Consensus 105 le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~f 157 (174)
T 3hho_A 105 LESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQS--EWLAAADQIRKLKF 157 (174)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHH
Confidence 333333445 46677888888888888999999999999 99999999888873
No 19
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=82.39 E-value=6.8 Score=26.68 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033716 31 LHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (112)
Q Consensus 31 l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
|.+.....+.+-+..+....-......+..|..++..+ ||+.....+.+||
T Consensus 102 lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 102 LDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence 33333334555566776666666677788888999999 9999999888776
No 20
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=82.02 E-value=4 Score=21.53 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 033716 59 NSMARALEQPCVDFKQVDSHVHQLKG 84 (112)
Q Consensus 59 ~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (112)
.++--|...+ |++++..+=|+||+
T Consensus 15 QqiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 15 KQMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 3566688899 99999999999986
No 21
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=77.79 E-value=2.1 Score=25.56 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=35.3
Q ss_pred cCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 033716 22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (112)
Q Consensus 22 ~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~ 63 (112)
..+++.++++++|...-+..|+..++..|=.+.+..+..|-+
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 345567889999999999999999999999998888877643
No 22
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=73.94 E-value=5 Score=26.76 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhhh
Q 033716 51 FDDAEKLINS-MARALEQPCVDFKQVDSHVHQLKGS 85 (112)
Q Consensus 51 ~~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGs 85 (112)
+.++.+.+.+ |...++++ ||..++...|.--|.
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~ 65 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQ 65 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTT
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHH
Confidence 4557788899 99999999 999999999965554
No 23
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=73.05 E-value=20 Score=24.68 Aligned_cols=80 Identities=8% Similarity=0.141 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhh
Q 033716 10 QFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKL-INSMARALEQPCVDFKQVDSHVHQLKGSSSS 88 (112)
Q Consensus 10 ~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~ 88 (112)
++.+.+.+++...-....+.++..+...-++ ..|++.+... +..+..|...+ |.+.|+.+
T Consensus 24 ~~~~~~~~~f~~s~~~~~l~~i~~~dp~Fd~-------~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~---------- 84 (194)
T 2cw9_A 24 KVTDLLGGLFSKTEMSEVLTEILRVDPAFDK-------DRFLKQCENDIIPNVLEAMISG--ELDILKDW---------- 84 (194)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHCTTCCH-------HHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH----------
T ss_pred hhhhhhccccCCCHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHh----------
Confidence 4444445555444333344455554333333 5789999998 69999999999 99999888
Q ss_pred hChHHHHHHHHHHHHHHHhh
Q 033716 89 IGALRVKNVCIAFRSFCDAQ 108 (112)
Q Consensus 89 lGa~~l~~~c~~lE~~~~~~ 108 (112)
+.=.-...++..+......|
T Consensus 85 ~t~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 85 CYEATYSQLAHPIQQAKALG 104 (194)
T ss_dssp BCHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHCC
Confidence 45555666666666655544
No 24
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=68.03 E-value=6 Score=26.24 Aligned_cols=32 Identities=6% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q 033716 52 DDAEKLINSMARALEQPCVDFKQVDSHVHQLKGS 85 (112)
Q Consensus 52 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs 85 (112)
.++.+.+.+|...++++ ||..++...|.--|.
T Consensus 31 ~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~ 62 (130)
T 3zsu_A 31 EKNAERFADLEVSVAKG--DWQEARNIMRGPLGE 62 (130)
T ss_dssp HHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhhc--chHHHHHHHhchHHH
Confidence 34566677777777777 777777777754443
No 25
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=63.68 E-value=15 Score=21.07 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=34.1
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 033716 26 DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSH 78 (112)
Q Consensus 26 ~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~ 78 (112)
++|.+++++- ..+|+++..++...-.+.+..+..|.. |.+.+-++
T Consensus 11 Pqf~~lR~~v-q~NP~~L~~lLqql~~~nP~l~~~I~~-------n~e~Fl~l 55 (61)
T 2f4m_B 11 PQFQQMRQII-QQNPSLLPALLQQIGRENPQLLQQISQ-------HQEHFIQM 55 (61)
T ss_dssp HHHHHHHHHH-HHCGGGHHHHHHHHHHHCHHHHHHHHH-------SHHHHHHH
T ss_pred hHHHHHHHHH-HHCHHHHHHHHHHHHhHCHHHHHHHHH-------CHHHHHHH
Confidence 4788888886 568999999999988888888876655 55555443
No 26
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=51.74 E-value=41 Score=23.38 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q 033716 41 DFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGS 85 (112)
Q Consensus 41 ~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs 85 (112)
.++.+.+..|..+ +...+|..|++.+ |-+.+.+++..||--
T Consensus 140 ~~l~~~~~~~~~~--~L~~~ID~ALd~~--D~e~F~~Lt~~L~~~ 180 (188)
T 3do9_A 140 RFLEESVFSFRRE--RLLKQIDEALDKQ--DKEAFHRLTAELKML 180 (188)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 3444555555544 7889999999999 999999999988753
No 27
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=50.85 E-value=20 Score=21.39 Aligned_cols=62 Identities=10% Similarity=0.199 Sum_probs=33.1
Q ss_pred HHHhhhhhccCchHHHHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 033716 13 DFSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSH 78 (112)
Q Consensus 13 ~~~~~~~~~~~ld~~f~~l~~L~~-~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~ 78 (112)
..+..+...|++.+. ....+.. ....+-...+++....-.+.....+..++.+. ++..++..
T Consensus 26 ~lld~L~~~~vlt~~--~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~ 88 (94)
T 2p1h_A 26 YIMDHMISDGFLTIS--EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHTSSCHH--HHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHCCCCCHH--HHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHH
Confidence 344444555666544 3444442 23445566666666555566666666666555 55555444
No 28
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=46.99 E-value=30 Score=23.85 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 033716 25 DDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (112)
Q Consensus 25 d~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~ 63 (112)
+++|.+++++- ..+|+++..|+...-++.|..+..|.+
T Consensus 32 ~Pqf~qlRq~v-qqNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 32 VEDLLSLRQVV-SGNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHH-HTCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHHH-HHCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 46788888876 568998888888877777777766544
No 29
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=46.65 E-value=11 Score=22.47 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 033716 26 DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHV 79 (112)
Q Consensus 26 ~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~a 79 (112)
++|.+++++- ..+|+++..++...-.+.+..+..|.. |.+.+-++.
T Consensus 13 Pqf~qlR~~v-qqNP~lL~~lLqqL~~~NPqL~q~I~~-------n~e~Fl~ll 58 (72)
T 1pve_A 13 PQFQQMRQII-QQNPSLLPALLQQIGRENPQLLQQISQ-------HQEHFIQML 58 (72)
T ss_dssp TTTTTHHHHH-TTCGGGHHHHHHHHHTTCHHHHHHHHT-------THHHHHHHH
T ss_pred hHHHHHHHHH-HHCHHHHHHHHHHHHhHCHHHHHHHHH-------CHHHHHHHH
Confidence 3577888876 568998888888888888777765543 566655543
No 30
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=41.91 E-value=69 Score=22.70 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033716 38 SSPDFVVEVASLFFDDAEKL-INSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQ 108 (112)
Q Consensus 38 ~~~~~~~~li~~f~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~ 108 (112)
-||.|- ...|++.+... ++.+-.|+..+ |.+.|+.+ ++-......+..+++..+.|
T Consensus 71 ~DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~l----------lse~~y~~f~~~i~~r~~~G 127 (222)
T 3qk9_A 71 MDPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKW----------FSEAPFNVYAAQQKIFKEQD 127 (222)
T ss_dssp ----CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH----------BCHHHHHHHHHHHHHHHTTT
T ss_pred hCCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhh----------cCHHHHHHHHHHHHHHHHCC
Confidence 355553 46788888877 67899999999 99999988 45555666666666655544
No 31
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=34.62 E-value=73 Score=18.88 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 033716 8 QKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQV 75 (112)
Q Consensus 8 ~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l 75 (112)
+.++.++++.......+|+. -.+++.++.+.|++++-...-.|.+-=...+++...+
T Consensus 8 k~~L~~Lv~~idp~~~ld~~-----------vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDv 64 (76)
T 1h3o_B 8 KKKLQDLVREVDPNEQLDED-----------VEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDV 64 (76)
T ss_dssp HHHHHHHHHHHCSSCCCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 34566667666554445533 3467888999999998887777776544443344433
No 32
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=34.21 E-value=1.1e+02 Score=20.74 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhhhccCchHH-HHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033716 5 SQLQKQFIDFSSSLYREGYVDDQ-FSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALE 66 (112)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~ld~~-f~~l~~L~~-~~~~~~~~~li~~f~~~~~~~l~~L~~a~~ 66 (112)
+.|+.-+..+++.++... .+ ...|..+.. ..+|+ ++..+..+++++...+..|+..+.
T Consensus 11 ~~l~dlf~~~L~Diy~aE---~q~~~aL~~~~~~a~~p~-Lk~~l~~H~~eT~~qi~rLe~i~~ 70 (173)
T 2gyq_A 11 QTMEDLLLHGLRDIYYAE---QQITKALPKMIEQATNRD-LSQGLTSHLEETQKQIERLDQVFK 70 (173)
T ss_dssp CSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665554432 22 234555553 44555 788899999999999999888764
No 33
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=31.85 E-value=44 Score=22.43 Aligned_cols=29 Identities=3% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033716 51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81 (112)
Q Consensus 51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (112)
++++...|..++..++++ +|..++...|.
T Consensus 52 Ik~~a~~i~~vk~lI~k~--~W~~vrn~LR~ 80 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDRK--AWPSLQNDLRL 80 (149)
T ss_dssp HHHHHHHHHTTHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cHHHHHHHHHH
Confidence 344667778899999999 99999888764
No 34
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=29.52 E-value=86 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=26.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHH
Q 033716 46 VASLFFDD-AEKLINSMARALEQPCVDFKQVDSH 78 (112)
Q Consensus 46 li~~f~~~-~~~~l~~L~~a~~~~~~D~~~l~~~ 78 (112)
....++.+ +...+..|..|+.++ |++.+.++
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l 269 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQL 269 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 45667777 789999999999999 99988665
No 35
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=27.73 E-value=1.1e+02 Score=18.72 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHhhhhhhhhC
Q 033716 46 VASLFFDDAEKLINSMARALEQPCVDFKQV-----DSHVHQLKGSSSSIG 90 (112)
Q Consensus 46 li~~f~~~~~~~l~~L~~a~~~~~~D~~~l-----~~~aH~LKGsa~~lG 90 (112)
.+..+++.+...+...+..+..+ +|... ...-|.+|+--...|
T Consensus 4 ~~~~~l~~A~~~L~~A~~~~~~g--~y~~a~~~ay~a~~~alKAlL~~~g 51 (126)
T 2hsb_A 4 ELELRIRKAEKLVQDAKKEFEMG--LYERCCSTAYYAMFHAAKAMLLGYG 51 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777888888888888887 77654 444455666544444
No 36
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=27.28 E-value=1.1e+02 Score=18.85 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=25.6
Q ss_pred Cch-HHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 033716 23 YVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEK 56 (112)
Q Consensus 23 ~ld-~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~ 56 (112)
+|| +.|-+|+.++.--+-+.+..+++..-.+...
T Consensus 3 vLdqeEFveLrkfKgkvd~~~v~~IL~eiE~~~rk 37 (99)
T 2kjg_A 3 ILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLRG 37 (99)
T ss_dssp SCSCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 556 6788898888777888888888777666654
No 37
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=27.05 E-value=1.5e+02 Score=20.11 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhhhccCchHHHHHHHHhhc-cCChHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Q 033716 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASL-FFDDAEKLINSMARALEQP 68 (112)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~-~~~~~~~~~li~~-f~~~~~~~l~~L~~a~~~~ 68 (112)
++++=.+-++.........+-+....++....+ -++|+|+..+... |..........|..+++.+
T Consensus 93 L~~~L~ec~~lL~~lv~~HLT~KS~~Ri~~vF~~f~~~efL~~lf~~~~~~~L~kI~~~Lnklld~g 159 (161)
T 3f4m_A 93 LAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLLDEG 159 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTCHHHHHHHTSGGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCCHHHHHHHhCcHHHHHHHHHHHHHHHHHhCC
Confidence 334445566666677777777766667777765 5788888877664 4444456666677777665
No 38
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=26.52 E-value=1.6e+02 Score=20.26 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033716 8 QKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARAL 65 (112)
Q Consensus 8 ~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~ 65 (112)
+..+.+|+......+.....|..=-.+....+++-+.+++...++.....+..++...
T Consensus 110 r~~l~~~l~~~~~~~~~~~~f~~kl~f~~~l~~~~~~~~L~~~~~~~~~~l~~l~~~~ 167 (204)
T 3l9f_A 110 KKELASYLQSDVNDEIFKSDFLMRLFFGNSLNDDDLEQLIREEIERKEEKIKRLSENL 167 (204)
T ss_dssp HHHHHHHHHSCCCCCEEECHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776655444333432222333567888899999999999999998886654
No 39
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=25.87 E-value=95 Score=19.31 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=25.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 033716 37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQ 74 (112)
Q Consensus 37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~ 74 (112)
.|+.+-+..+++.|.+....+ +.|...+... |++.
T Consensus 9 lGG~~~i~~lv~~FY~~v~~d-p~l~~~F~~~--d~~~ 43 (128)
T 2qrw_A 9 VGGAKTFDAIVSRFYAQVAED-EVLRRVYPED--DLAG 43 (128)
T ss_dssp TTTHHHHHHHHHHHHHHHHHC-HHHHHHSCCS--CCHH
T ss_pred hCCHHHHHHHHHHHHHHHHhC-HHHHHhccCC--CHHH
Confidence 366777888888888887775 5577777655 6654
No 40
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=24.86 E-value=1.6e+02 Score=19.78 Aligned_cols=52 Identities=10% Similarity=0.032 Sum_probs=36.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033716 30 QLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (112)
Q Consensus 30 ~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
++..|+...+.+|=...+...+..-..-|.-.+.++..+ +...++.+|-.+.
T Consensus 100 ~l~~L~~a~G~~fD~~fl~~MI~HH~~AI~ma~~~~~~g--~dp~lk~lA~~ii 151 (179)
T 2qf9_A 100 EMKKLGTLDGKQAEVYYLQLMTEHHRGGVHMAKGCVERC--TVGVEKRLARGMV 151 (179)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 555666555667777777777777777777777777777 6778888876554
No 41
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=24.04 E-value=9 Score=26.18 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=23.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHH-HHHHHHHH
Q 033716 61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNV-CIAFRSFC 105 (112)
Q Consensus 61 L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~-c~~lE~~~ 105 (112)
+..+++.. .++.+.+|.|||+--.|||-++..+ |..|...+
T Consensus 7 ~~~~~~~~----~~I~kFs~~IK~ANEfIGALQvldialkKL~k~~ 48 (158)
T 3k1h_A 7 MTNAIEKS----QQIAKFSRDMKNINESVGALQVLQIACKKLFNKS 48 (158)
T ss_dssp -----------------CEEECCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544 6788899999999999999998764 67777664
No 42
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=23.66 E-value=2.4e+02 Score=21.30 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=41.6
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhh
Q 033716 28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSI 89 (112)
Q Consensus 28 f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~l 89 (112)
|.++....+..+++-+.+.|..|-.+++. |....+..|-|-++...+-|+=+|.-..+
T Consensus 51 F~~~sd~yeal~~e~ine~ie~l~~~~e~----~T~imEs~p~DeeEa~kLlhKh~~~~~Kl 108 (384)
T 3tnf_B 51 FEKLLTDSEELSLSEINEKMEAFSKDSEK----LTQLMEKHKGDEKTVQSLQREHHDIKAKL 108 (384)
T ss_dssp SHHHHTTCCCCCHHHHHHHHHHHHHHHHH----HHHHHTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhcCHHHHHHHHHHHHhhhHH----HHHHHhcCcccHHHHHHHHHhhcccchhh
Confidence 55666666678999999999999555433 34444444559999999999887765544
No 43
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=22.54 E-value=1.4e+02 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033716 47 ASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81 (112)
Q Consensus 47 i~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (112)
...+++.+..++...+..++.+ +|......+|+
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g--~y~~a~f~aqQ 36 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGG--YYELACFLSQQ 36 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHH
Confidence 3457788888888888888888 88887777765
No 44
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=22.50 E-value=1.6e+02 Score=18.93 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033716 46 VASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81 (112)
Q Consensus 46 li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (112)
-...+++.+..++...+.++..+ ++......+|+
T Consensus 8 e~~~wl~~A~~dl~~A~~~~~~g--~y~~a~F~aqQ 41 (141)
T 3o10_A 8 EARRWLRQARANFSAARNDLHKN--ANEWVCFKCYL 41 (141)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHhhHHhhC--ccceEeeehhH
Confidence 34456666777777777777777 77666666654
No 45
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.08 E-value=93 Score=18.73 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=32.0
Q ss_pred hhhhhccCchHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 033716 16 SSLYREGYVDDQFSQLHKLQDE---SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSH 78 (112)
Q Consensus 16 ~~~~~~~~ld~~f~~l~~L~~~---~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~ 78 (112)
.-++..|++... ....+... ...+-..+++.....-.+.-...+-.++... ++..++++
T Consensus 28 d~L~~~~vlt~~--~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et--~~~~La~l 89 (97)
T 3ygs_P 28 DVLLSRELFRPH--MIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDT--GQDMLASF 89 (97)
T ss_dssp HHHHHTTSSCHH--HHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTT--TCHHHHHH
T ss_pred HHHHHcCCCCHH--HHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHc--CcHHHHHH
Confidence 334445555544 44444432 2356666666666666666666666666653 44444444
No 46
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=21.48 E-value=71 Score=18.37 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHhhhhhhhhC
Q 033716 70 VDFKQVDSHVHQLKGSSSSIG 90 (112)
Q Consensus 70 ~D~~~l~~~aH~LKGsa~~lG 90 (112)
||++++...+-.+++.+..+-
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~ 26 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIR 26 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 588888888888887776653
No 47
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=21.45 E-value=1.5e+02 Score=18.16 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH
Q 033716 57 LINSMARALEQPCVDFKQVDSHV 79 (112)
Q Consensus 57 ~l~~L~~a~~~~~~D~~~l~~~a 79 (112)
.+.+|++|++.. ||+.+++..
T Consensus 68 emdelreaveke--dwenlrdel 88 (114)
T 2p06_A 68 EMDELREAVEKE--DWENLRDEL 88 (114)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHH
Confidence 356789999999 999988764
No 48
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=21.10 E-value=1.4e+02 Score=18.30 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 033716 38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQ 74 (112)
Q Consensus 38 ~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~ 74 (112)
|+.+-+..+++.|.+-...+ +.|...+... |++.
T Consensus 8 Gg~~~i~~lv~~FY~~v~~D-p~l~~~F~~~--d~~~ 41 (123)
T 2ksc_A 8 GGAAAVDLAVEKFYGKVLAD-ERVNRFFVNT--DMAK 41 (123)
T ss_dssp CCSHHHHHHHHHHHHHHHHC-HHHHTGGGSS--CHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC-HHHHHhcCCC--CHHH
Confidence 56677888888888887654 4567767665 7743
No 49
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=20.82 E-value=2.6e+02 Score=20.66 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 033716 48 SLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80 (112)
Q Consensus 48 ~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (112)
..++.+.......+..++.++ |++.+.++.+
T Consensus 245 ~~~~~~~~~~~~~~~~aL~~g--d~~~lg~lm~ 275 (365)
T 3k17_A 245 QHFLTRNNEIMKQIIQAFHTK--DEELLYSSIK 275 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHH
Confidence 445566666667788888888 9888877664
No 50
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=20.32 E-value=1.6e+02 Score=18.01 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 033716 49 LFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80 (112)
Q Consensus 49 ~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (112)
.+++.+..++...+..++.+ +|......+|
T Consensus 6 ~w~~~A~~~L~~A~~~~~~g--~y~~a~f~a~ 35 (127)
T 1ufb_A 6 DWLEQARHNLRHAQGSLGLG--DYAWACFAAQ 35 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC--ChHHHHHHHH
Confidence 34555555555555555555 5554444443
Done!