BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033717
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NIV|A Chain A, The Crystal Structure Of Glutathione S-Transferase From
           Legionella Pneumophila
 pdb|3NIV|B Chain B, The Crystal Structure Of Glutathione S-Transferase From
           Legionella Pneumophila
 pdb|3NIV|C Chain C, The Crystal Structure Of Glutathione S-Transferase From
           Legionella Pneumophila
 pdb|3NIV|D Chain D, The Crystal Structure Of Glutathione S-Transferase From
           Legionella Pneumophila
          Length = 222

 Score = 30.4 bits (67), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 17/77 (22%)

Query: 47  EEFSMESETSKRVLAAAHKFISPG---------ALRRDAPVCNGGARGDPYSKSCLPPQ- 96
           E+F+   E   +VL   H ++  G         AL RD PVC G   G   +  CL PQ 
Sbjct: 121 EQFNANEE---QVLEWYHHWLKTGFDAFEEKLGALERDKPVCFGSEVG--LADVCLIPQV 175

Query: 97  --SNRYQRGCAAYKMCR 111
             ++R+    A+Y +  
Sbjct: 176 YNAHRFHFDXASYPIIN 192


>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With Glycine At 1.35 Angstroms Resolution
 pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
          Angstroms Resolution
 pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
          Angstroms Resolution
 pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With Cycloleucine
 pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With Cycloleucine
 pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With Acbc
 pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
          Complex With Acpc
 pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
          Complex
          Length = 292

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 47 EEFSMESETSKRVLAAAHKFISPGALRRDAPVC 79
          EEF++  +  K+V+       SPG+ R   P C
Sbjct: 30 EEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQC 62


>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With D-Serine At 1.45 Angstroms Resolution
 pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
          Complex With D-Cycloserine At 1.60 Angstroms Resolution
          Length = 292

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 47 EEFSMESETSKRVLAAAHKFISPGALRRDAPVC 79
          EEF++  +  K+V+       SPG+ R   P C
Sbjct: 30 EEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQC 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,092,072
Number of Sequences: 62578
Number of extensions: 98654
Number of successful extensions: 122
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)