BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033717
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23262|RLF32_ARATH Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
Length = 117
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 11 LCLLLFAVSSVTAAAKESYKHGECDGSIAECGELA-AEEFS--MESETSKRVLAAAHKFI 67
LCLLL V+S +++ C+GS+AEC + EE S MES +S+R+ +
Sbjct: 17 LCLLLAHVTSKASSS------SLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKL 70
Query: 68 SPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
S GALRR+ P C+GG RG+ YS CLPP SN Y RGC+ + C
Sbjct: 71 SYGALRRNQPACDGGKRGESYSTQCLPPPSNPYSRGCSKHYRC 113
>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
Length = 116
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 14 LLFAVSSVTAAAKESYKHGECDGSIAECG-ELAAEEFSMESETSKRVLAAAHKFISPGAL 72
LFA + ++ +C+G+IAEC A EEF M+SE ++R+LA K+IS GAL
Sbjct: 20 FLFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGAL 78
Query: 73 RRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
RR+ C+ RG Y Q+N Y RGC+A CR
Sbjct: 79 RRNTVPCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 115
>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1
Length = 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 34 CDGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCL 93
C GSIAEC + AEE M+SE ++R+LA K+IS +L+R++ C+ RG Y
Sbjct: 47 CHGSIAEC--IGAEEEEMDSEINRRILATT-KYISYQSLKRNSVPCS--RRGASYYNCQN 101
Query: 94 PPQSNRYQRGCAAYKMCR 111
Q+N Y RGC+ CR
Sbjct: 102 GAQANPYSRGCSKIARCR 119
>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1
Length = 115
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 15/111 (13%)
Query: 11 LCLLLFAVSSVTAAAKESYKH---------GECDGSIAECGELAAEEFSMESETSKRVLA 61
LC+L+ A AAA +S + G C GSI EC EEF ++SE+++R+LA
Sbjct: 9 LCVLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGEC-IAEEEEFELDSESNRRILA 67
Query: 62 AAHKFISPGALRRDAPVCNGGARGDPYSKSCLP-PQSNRYQRGCAAYKMCR 111
K+IS GAL++++ C+ RG Y +C P Q+N Y RGC+A CR
Sbjct: 68 T-KKYISYGALQKNSVPCS--RRGASY-YNCKPGAQANPYSRGCSAITRCR 114
>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1
Length = 110
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 36 GSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPP 95
G I E GEL ++ M+SET++R LAA +IS GALR++ C+ RG Y
Sbjct: 36 GCIGEDGEL---DYLMDSETNRRQLAARRSYISYGALRKNNVPCS--RRGRSYYDCKKRK 90
Query: 96 QSNRYQRGCAAYKMC 110
++N Y+RGC+ C
Sbjct: 91 RANPYRRGCSVITHC 105
>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23
PE=1 SV=1
Length = 138
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 18/94 (19%)
Query: 33 ECDGSIAECGELAA---------------EEFSMESETSKRVLAAAHKFISPGALRRDAP 77
EC G+IAEC AA EEF M+SE ++R+LA ++IS GALRR+
Sbjct: 46 ECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILAT-RRYISYGALRRNTI 104
Query: 78 VCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111
C+ RG Y Q+N Y RGC+A CR
Sbjct: 105 PCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 136
>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1
Length = 113
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 8 FCSLCLLLFAVSSVTAAAKE---SYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAH 64
F S L++FA+ + +A +GE D + + +E M +E S+RVL A
Sbjct: 2 FNSTALVIFAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQK 61
Query: 65 KFISPGALRRDAPVCN--GGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
++I LRRD C G + D C Q+N Y RGC C
Sbjct: 62 RYIGYETLRRDMVPCQKPGASYYD-----CRSGQANSYSRGCDTITRC 104
>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1
Length = 110
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 1 MEIDMKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVL 60
M + M L +L SV A + G I E EL E M+SET++R L
Sbjct: 1 MGVKMLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDEL---ESLMDSETNRRQL 57
Query: 61 AAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
A ++I AL+++ C+ RG Y ++N Y+RGC+A C
Sbjct: 58 ARGRRYIGYDALKKNNVPCS--RRGRSYYDCKKRRRNNPYRRGCSAITHC 105
>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1
Length = 119
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 51 MESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
+S+ S+R+LA K+IS GA+RR++ C+ RG Y Q+N Y RGC+ C
Sbjct: 61 FDSDISRRILAQ-KKYISYGAMRRNSVPCS--RRGASYYNCQRGAQANPYSRGCSTITRC 117
Query: 111 R 111
R
Sbjct: 118 R 118
>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1
Length = 118
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 11 LCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSME--SETSKRVLAAAHKFIS 68
LCL SVT +GE D + G + EE SE S+RV+ ++IS
Sbjct: 13 LCLQTHLSISVTVPIPSV--NGEIDAMLNRNGVIGEEEGEEMMPSEISRRVMMMRKQYIS 70
Query: 69 PGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
LRRD C G Y +C Q+N Y RGC+ C
Sbjct: 71 YETLRRDMVPCQKP--GASY-YACRSGQANAYNRGCSVITRC 109
>sp|O49320|RLF18_ARATH Protein RALF-like 18 OS=Arabidopsis thaliana GN=RALFL18 PE=3 SV=1
Length = 103
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 10 SLCLLLFAVSSVTAAAKESYKHG----ECDGSIAECGELAAEEFSMESETSKRVLAAAHK 65
++ LL+ AV ++AA + G +CD + + + S + S R+L A +
Sbjct: 4 NMKLLIIAVMIISAALLPALVVGSRPVKCDNCMDGGEKEEIMKMSSGVDVSHRILQA-KR 62
Query: 66 FISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMC 110
FI AL+++ P G P N+Y+RGC+A C
Sbjct: 63 FIDYEALKKNLPAKPDGKPDKP---------DNKYRRGCSAATGC 98
>sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GLN3 PE=1 SV=2
Length = 730
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 35 DGSIAECGELAAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLP 94
+G IA+ + ++F+M S + + +P + D P N G+ G+ SKS L
Sbjct: 128 NGEIAQLWDFNVDQFNMTPSNS----SGSATISAPNSFTSDIPQYNHGSLGNSVSKSSLF 183
Query: 95 P 95
P
Sbjct: 184 P 184
>sp|Q87HN1|COBQ_VIBPA Cobyric acid synthase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=cobQ PE=3 SV=1
Length = 483
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 9/14 (64%), Positives = 14/14 (100%)
Query: 31 HGECDGSIAECGEL 44
+GECDG+I+ECG++
Sbjct: 412 NGECDGAISECGQI 425
>sp|P60976|CALA_CALS5 U1-nemetoxin-Csp1a OS=Calisoga sp. PE=1 SV=1
Length = 80
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 5 MKKFCSLCLLLFAVSSVTAAAKESYKHGECDGSIAECGELAAEEFSMESETSKRVLAAAH 64
MK F C+L+ AV++ T+AA+ DG + E L EF KR ++A +
Sbjct: 1 MKYFVVFCVLIIAVAAFTSAAE--------DGEVFEENPL---EFP--KTIQKRCISARY 47
Query: 65 KFISPGALRRDAPVCNGGA------RGDPYSKSCLPP 95
P + +D N G R DP SK CL P
Sbjct: 48 ----PCSNSKDCCSGNCGTFWTCYIRKDPCSKECLAP 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,755,443
Number of Sequences: 539616
Number of extensions: 1341272
Number of successful extensions: 2801
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2774
Number of HSP's gapped (non-prelim): 17
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)