Query 033717
Match_columns 112
No_of_seqs 142 out of 226
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 1.9E-35 4E-40 213.3 6.2 78 31-111 40-118 (119)
2 PLN03221 rapid alkalinization 100.0 1.4E-34 3.1E-39 212.7 7.1 102 7-111 13-136 (137)
3 PF05498 RALF: Rapid ALkaliniz 99.9 4.8E-27 1.1E-31 154.9 4.6 63 46-111 3-65 (66)
4 PF07172 GRP: Glycine rich pro 71.1 5.2 0.00011 27.9 3.0 9 6-14 4-12 (95)
5 PF07172 GRP: Glycine rich pro 55.0 21 0.00045 24.8 3.6 16 5-20 6-21 (95)
6 PF06404 PSK: Phytosulfokine p 53.0 9.1 0.0002 26.0 1.5 13 55-67 62-74 (81)
7 TIGR03147 cyt_nit_nrfF cytochr 47.4 21 0.00045 26.3 2.8 12 7-18 2-13 (126)
8 PF07803 GSG-1: GSG1-like prot 45.9 25 0.00054 25.9 2.9 21 8-28 9-29 (118)
9 PF11714 Inhibitor_I53: Thromb 44.8 21 0.00046 24.4 2.2 18 5-22 1-18 (78)
10 PF03918 CcmH: Cytochrome C bi 43.8 14 0.0003 27.5 1.4 27 32-60 44-71 (148)
11 PF08139 LPAM_1: Prokaryotic m 43.0 26 0.00056 19.2 2.0 17 5-21 7-23 (25)
12 PF11106 YjbE: Exopolysacchari 41.9 25 0.00054 24.3 2.3 19 5-23 1-19 (80)
13 PF15240 Pro-rich: Proline-ric 40.2 20 0.00043 28.0 1.8 13 9-21 4-16 (179)
14 PRK10780 periplasmic chaperone 39.5 34 0.00073 25.2 2.9 13 5-17 1-13 (165)
15 TIGR02052 MerP mercuric transp 34.8 29 0.00062 20.9 1.6 18 5-22 1-18 (92)
16 PF07437 YfaZ: YfaZ precursor; 34.4 31 0.00068 26.4 2.1 18 5-22 1-18 (180)
17 PF08194 DIM: DIM protein; In 33.7 21 0.00046 21.2 0.8 9 11-19 8-16 (36)
18 PF05279 Asp-B-Hydro_N: Aspart 31.7 30 0.00066 28.0 1.7 18 5-23 13-30 (243)
19 PF12276 DUF3617: Protein of u 31.4 36 0.00078 24.3 1.9 12 6-17 2-13 (162)
20 COG5510 Predicted small secret 30.6 71 0.0015 19.8 2.8 18 5-22 2-19 (44)
21 PRK10053 hypothetical protein; 28.3 55 0.0012 24.1 2.4 13 5-17 1-13 (130)
22 COG0848 ExbD Biopolymer transp 27.7 50 0.0011 24.2 2.1 22 2-23 15-36 (137)
23 PF11948 DUF3465: Protein of u 25.2 39 0.00084 25.2 1.1 14 5-18 1-14 (131)
24 PRK11024 colicin uptake protei 25.1 51 0.0011 23.6 1.7 21 2-22 14-34 (141)
25 PF15330 SIT: SHP2-interacting 25.0 88 0.0019 22.2 2.9 17 7-23 5-21 (107)
26 PF10917 DUF2708: Protein of u 24.9 47 0.001 20.5 1.3 22 10-37 6-27 (43)
27 TIGR03038 PS_II_psbM photosyst 24.2 88 0.0019 18.3 2.3 16 1-16 1-16 (33)
28 TIGR02804 ExbD_2 TonB system t 23.3 85 0.0018 21.8 2.5 21 2-22 3-23 (121)
29 PRK08457 motB flagellar motor 22.7 66 0.0014 25.6 2.1 14 10-23 27-40 (257)
30 TIGR02801 tolR TolR protein. T 22.4 71 0.0015 22.2 2.0 20 2-21 4-23 (129)
31 PRK06667 motB flagellar motor 21.9 65 0.0014 25.3 1.9 14 10-23 29-42 (252)
32 PRK04989 psbM photosystem II r 21.9 1E+02 0.0023 18.2 2.3 16 1-16 1-16 (35)
33 PRK14094 psbM photosystem II r 21.2 1E+02 0.0022 19.5 2.3 16 1-16 1-16 (50)
34 CHL00080 psbM photosystem II p 21.1 1.1E+02 0.0024 18.0 2.3 16 1-16 1-16 (34)
35 KOG4063 Major epididymal secre 21.0 1.1E+02 0.0024 23.6 2.9 9 72-80 92-100 (158)
36 PF06585 JHBP: Haemolymph juve 20.9 43 0.00093 25.4 0.7 16 29-44 27-45 (248)
37 PF09680 Tiny_TM_bacill: Prote 20.5 87 0.0019 17.1 1.6 14 5-18 6-19 (24)
38 PLN03207 stomagen; Provisional 20.4 2.5E+02 0.0055 20.4 4.5 11 53-63 61-71 (113)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=213.35 Aligned_cols=78 Identities=47% Similarity=0.859 Sum_probs=70.9
Q ss_pred CCCccCchhhhhhh-hhhhhcccchhhhhhHhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 033717 31 HGECDGSIAECGEL-AAEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKM 109 (112)
Q Consensus 31 ~~~C~Gsi~EC~~~-~e~E~~m~se~~RR~L~~~~~yISYgAL~~d~vpC~~~~~G~sYy~~C~~~~aNpY~RGCs~i~R 109 (112)
...|+|+++||+++ +|+|++||||++||+|+++ +||||+||++|.+||+ ++|++||+|++++|+|||+|||++|||
T Consensus 40 ~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~-rYISYgALrrd~vPCs--rrG~SYynC~~~~~ANPY~RGCs~ITr 116 (119)
T PLN03222 40 DSKCNGTIAECSLSTAEEEFEMDSEINRRILATT-KYISYGALRRNTVPCS--RRGASYYNCRRGAQANPYSRGCSAITR 116 (119)
T ss_pred CCcCCCCHHHhhcccccchhccccHHHHHHHhhc-CeecHHHhcCCCCCCC--CCCCCccccCCCCCCCCCCCCchhhcc
Confidence 34699999999974 5679999999999999987 9999999999999999 789999965556899999999999999
Q ss_pred cc
Q 033717 110 CR 111 (112)
Q Consensus 110 Cr 111 (112)
||
T Consensus 117 Cr 118 (119)
T PLN03222 117 CR 118 (119)
T ss_pred cc
Confidence 98
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=100.00 E-value=1.4e-34 Score=212.70 Aligned_cols=102 Identities=39% Similarity=0.654 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-------cCCCCccCchhhhhh------h-------hh--hhhcccchhhhhhHhhhc
Q 033717 7 KFCSLCLLLFAVSSVTAAAKES-------YKHGECDGSIAECGE------L-------AA--EEFSMESETSKRVLAAAH 64 (112)
Q Consensus 7 ~~~~l~~ll~~~~~~~~~~~~~-------~~~~~C~Gsi~EC~~------~-------~e--~E~~m~se~~RR~L~~~~ 64 (112)
-|..|++|.+-+-+|++..|.. +....|+|||+||++ + +| +|++||||++||+|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~- 91 (137)
T PLN03221 13 IFAILLILAVHFWSVAVSSQSIEFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATR- 91 (137)
T ss_pred HHHHHHHHHHHHHhheeecccccccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcC-
Confidence 4555555444445555433222 223469999999973 1 11 37899999999999987
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 033717 65 KFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111 (112)
Q Consensus 65 ~yISYgAL~~d~vpC~~~~~G~sYy~~C~~~~aNpY~RGCs~i~RCr 111 (112)
+||||+||++|.+||+ ++|++||+|++++|+|||+|||++|||||
T Consensus 92 rYISYgALrrd~vPCs--rrG~SYynC~~~~pANPY~RGCs~ITRCr 136 (137)
T PLN03221 92 RYISYGALRRNTIPCS--RRGASYYNCRRGAQANPYSRGCSAITRCR 136 (137)
T ss_pred CccCHHHhccCCCCCC--CCCCCccccCCCCCCCCCCCCcccccccC
Confidence 8999999999999999 78999997666689999999999999998
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.93 E-value=4.8e-27 Score=154.89 Aligned_cols=63 Identities=49% Similarity=0.849 Sum_probs=59.4
Q ss_pred hhhhcccchhhhhhHhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 033717 46 AEEFSMESETSKRVLAAAHKFISPGALRRDAPVCNGGARGDPYSKSCLPPQSNRYQRGCAAYKMCR 111 (112)
Q Consensus 46 e~E~~m~se~~RR~L~~~~~yISYgAL~~d~vpC~~~~~G~sYy~~C~~~~aNpY~RGCs~i~RCr 111 (112)
|+|+.|+||++||+|+++ +||||+||++|.+||. .+|.+||++|+++|+|||+|||++|||||
T Consensus 3 e~~~~~~s~~~~R~~a~~-~yIsYgaL~~~~~pc~--~~g~~~~~c~~~~paNpY~RGC~~~~rCr 65 (66)
T PF05498_consen 3 EEEVVMESEASRRILAAR-RYISYGALRRDRVPCS--PRGCSYYNCCPRQPANPYSRGCSKITRCR 65 (66)
T ss_pred hHHhhhhhHHHHHHHhcC-CeecchhccCCCCCCC--cccCCCcccCCCCCCCCCCCCCCccccCC
Confidence 578899999999999988 9999999999999999 78999997778899999999999999998
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.13 E-value=5.2 Score=27.90 Aligned_cols=9 Identities=56% Similarity=0.600 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 033717 6 KKFCSLCLL 14 (112)
Q Consensus 6 ~~~~~l~~l 14 (112)
|.|++|.||
T Consensus 4 K~~llL~l~ 12 (95)
T PF07172_consen 4 KAFLLLGLL 12 (95)
T ss_pred hHHHHHHHH
Confidence 344444333
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.03 E-value=21 Score=24.83 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHh
Q 033717 5 MKKFCSLCLLLFAVSS 20 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~ 20 (112)
|+.+.+|+..||+|||
T Consensus 6 ~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 6 FLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445444433333333
No 6
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=52.97 E-value=9.1 Score=26.04 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=9.1
Q ss_pred hhhhhHhhhcccc
Q 033717 55 TSKRVLAAAHKFI 67 (112)
Q Consensus 55 ~~RR~L~~~~~yI 67 (112)
..||+|++.-.||
T Consensus 62 L~RRtL~AHlDYI 74 (81)
T PF06404_consen 62 LMRRTLAAHLDYI 74 (81)
T ss_pred HHHHHHHHHhhhe
Confidence 4799998654555
No 7
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=47.43 E-value=21 Score=26.31 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 033717 7 KFCSLCLLLFAV 18 (112)
Q Consensus 7 ~~~~l~~ll~~~ 18 (112)
+|++|++++|+.
T Consensus 2 ~~~~~l~~~~~~ 13 (126)
T TIGR03147 2 KFLALLLLLISF 13 (126)
T ss_pred cHHHHHHHHHHH
Confidence 577777766654
No 8
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=45.91 E-value=25 Score=25.89 Aligned_cols=21 Identities=38% Similarity=0.298 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhh
Q 033717 8 FCSLCLLLFAVSSVTAAAKES 28 (112)
Q Consensus 8 ~~~l~~ll~~~~~~~~~~~~~ 28 (112)
+++|++-+||++.++.+...+
T Consensus 9 ~Ls~~ln~LAL~~S~tA~~sS 29 (118)
T PF07803_consen 9 LLSLILNLLALAFSTTALLSS 29 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 566666666655554434333
No 9
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=44.79 E-value=21 Score=24.39 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 033717 5 MKKFCSLCLLLFAVSSVT 22 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~~ 22 (112)
|+.|..|+++.++.++|-
T Consensus 1 MKhFaiLilavVaSAvVM 18 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVM 18 (78)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 577877776665444443
No 10
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=43.85 E-value=14 Score=27.54 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=12.5
Q ss_pred CCc-cCchhhhhhhhhhhhcccchhhhhhH
Q 033717 32 GEC-DGSIAECGELAAEEFSMESETSKRVL 60 (112)
Q Consensus 32 ~~C-~Gsi~EC~~~~e~E~~m~se~~RR~L 60 (112)
+.| +-++++|..+-- -.|..++.+++.
T Consensus 44 p~Cq~qsi~~s~a~~A--~dmR~~I~~~l~ 71 (148)
T PF03918_consen 44 PVCQNQSIADSNAPIA--RDMRREIREMLA 71 (148)
T ss_dssp TTTTS-CTTT--SHHH--HHHHHHHHHHHH
T ss_pred CCCCCCchhhcCcHHH--HHHHHHHHHHHH
Confidence 356 458999976511 124445555544
No 11
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=42.99 E-value=26 Score=19.19 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHhh
Q 033717 5 MKKFCSLCLLLFAVSSV 21 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~ 21 (112)
|++++.+++.++.+|.+
T Consensus 7 mKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45666666666556554
No 12
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=41.92 E-value=25 Score=24.29 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 033717 5 MKKFCSLCLLLFAVSSVTA 23 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~~~ 23 (112)
||+.++++|.+++++++++
T Consensus 1 MKK~~~~~~~i~~l~~~s~ 19 (80)
T PF11106_consen 1 MKKIIYGLFAILALASSSA 19 (80)
T ss_pred ChhHHHHHHHHHHHHhcch
Confidence 5777776666666655554
No 13
>PF15240 Pro-rich: Proline-rich
Probab=40.19 E-value=20 Score=28.02 Aligned_cols=13 Identities=38% Similarity=0.444 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhh
Q 033717 9 CSLCLLLFAVSSV 21 (112)
Q Consensus 9 ~~l~~ll~~~~~~ 21 (112)
++|+..||||||+
T Consensus 4 VLLSvALLALSSA 16 (179)
T PF15240_consen 4 VLLSVALLALSSA 16 (179)
T ss_pred HHHHHHHHHhhhc
Confidence 3344455555554
No 14
>PRK10780 periplasmic chaperone; Provisional
Probab=39.49 E-value=34 Score=25.19 Aligned_cols=13 Identities=38% Similarity=0.248 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHH
Q 033717 5 MKKFCSLCLLLFA 17 (112)
Q Consensus 5 ~~~~~~l~~ll~~ 17 (112)
|++|+.+++|+|+
T Consensus 1 Mkk~~~~~~l~l~ 13 (165)
T PRK10780 1 MKKWLLAAGLGLA 13 (165)
T ss_pred ChHHHHHHHHHHH
Confidence 5777776655443
No 15
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=34.81 E-value=29 Score=20.89 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 033717 5 MKKFCSLCLLLFAVSSVT 22 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~~ 22 (112)
|+.++.|++|+|.++-.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPA 18 (92)
T ss_pred ChhHHHHHHHHHHhcchh
Confidence 455556655555444443
No 16
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=34.44 E-value=31 Score=26.36 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 033717 5 MKKFCSLCLLLFAVSSVT 22 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~~ 22 (112)
||+|+++.+++|++.+.+
T Consensus 1 m~k~~~a~~~~l~~~s~~ 18 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSAS 18 (180)
T ss_pred CchHHHHHHHHHHHHhhh
Confidence 677877666555444443
No 17
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=33.75 E-value=21 Score=21.18 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 033717 11 LCLLLFAVS 19 (112)
Q Consensus 11 l~~ll~~~~ 19 (112)
|.|+||+++
T Consensus 8 ~~l~lLal~ 16 (36)
T PF08194_consen 8 FALLLLALA 16 (36)
T ss_pred HHHHHHHHH
Confidence 445555433
No 18
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=31.71 E-value=30 Score=28.05 Aligned_cols=18 Identities=39% Similarity=0.313 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 033717 5 MKKFCSLCLLLFAVSSVTA 23 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~~~ 23 (112)
|.||++|.||.+ .+++++
T Consensus 13 ~~~~~~~~~~~~-~~~~~~ 30 (243)
T PF05279_consen 13 FTWFLVLALLGV-WSSVAV 30 (243)
T ss_pred HHHHHHHHHHHH-HHhhHh
Confidence 456666555543 455544
No 19
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=31.37 E-value=36 Score=24.33 Aligned_cols=12 Identities=33% Similarity=0.193 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 033717 6 KKFCSLCLLLFA 17 (112)
Q Consensus 6 ~~~~~l~~ll~~ 17 (112)
++++++++++++
T Consensus 2 ~~~~~~~~~~~~ 13 (162)
T PF12276_consen 2 KRRLLLALALAL 13 (162)
T ss_pred chHHHHHHHHHH
Confidence 444444444433
No 20
>COG5510 Predicted small secreted protein [Function unknown]
Probab=30.61 E-value=71 Score=19.78 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 033717 5 MKKFCSLCLLLFAVSSVT 22 (112)
Q Consensus 5 ~~~~~~l~~ll~~~~~~~ 22 (112)
|+++..+.+++++.|...
T Consensus 2 mk~t~l~i~~vll~s~ll 19 (44)
T COG5510 2 MKKTILLIALVLLASTLL 19 (44)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 677777776666555554
No 21
>PRK10053 hypothetical protein; Provisional
Probab=28.29 E-value=55 Score=24.15 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHH
Q 033717 5 MKKFCSLCLLLFA 17 (112)
Q Consensus 5 ~~~~~~l~~ll~~ 17 (112)
|++++++++++++
T Consensus 1 MKK~~~~~~~~~~ 13 (130)
T PRK10053 1 MKLQAIALASFLV 13 (130)
T ss_pred CcHHHHHHHHHHH
Confidence 5666655555544
No 22
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=27.66 E-value=50 Score=24.16 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHHHhhhh
Q 033717 2 EIDMKKFCSLCLLLFAVSSVTA 23 (112)
Q Consensus 2 ~~~~~~~~~l~~ll~~~~~~~~ 23 (112)
|||.-+|+=.+|.||++-|+++
T Consensus 15 eINvtPlIDVmLVLLiiFmvta 36 (137)
T COG0848 15 EINVTPLIDVMLVLLIIFMVTA 36 (137)
T ss_pred ccccccHHHHHHHHHHHHHHhh
Confidence 7888899777777776666654
No 23
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=25.23 E-value=39 Score=25.22 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHH
Q 033717 5 MKKFCSLCLLLFAV 18 (112)
Q Consensus 5 ~~~~~~l~~ll~~~ 18 (112)
||+|+++++.+|..
T Consensus 1 m~~~~~~~~~~~~~ 14 (131)
T PF11948_consen 1 MKRFLALFLSVLSA 14 (131)
T ss_pred CcchHHHHHHHHHH
Confidence 68888888666543
No 24
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.08 E-value=51 Score=23.61 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHHHHHHhhh
Q 033717 2 EIDMKKFCSLCLLLFAVSSVT 22 (112)
Q Consensus 2 ~~~~~~~~~l~~ll~~~~~~~ 22 (112)
|||+.++.=.+|+||++-|++
T Consensus 14 ~initPlIDVvfvLLiFFmvt 34 (141)
T PRK11024 14 EINIVPLLDVLLVLLLIFMAT 34 (141)
T ss_pred ccccCcHHHHHHHHHHHHHhc
Confidence 577777754444444444443
No 25
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.01 E-value=88 Score=22.19 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 033717 7 KFCSLCLLLFAVSSVTA 23 (112)
Q Consensus 7 ~~~~l~~ll~~~~~~~~ 23 (112)
.++.|+|||+.+++..+
T Consensus 5 ~il~llLll~l~asl~~ 21 (107)
T PF15330_consen 5 GILALLLLLSLAASLLA 21 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555543
No 26
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=24.93 E-value=47 Score=20.49 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCCccCc
Q 033717 10 SLCLLLFAVSSVTAAAKESYKHGECDGS 37 (112)
Q Consensus 10 ~l~~ll~~~~~~~~~~~~~~~~~~C~Gs 37 (112)
+++|.+|++|+++ .....|.|.
T Consensus 6 vfvFaiLaissvs------~~G~rC~g~ 27 (43)
T PF10917_consen 6 VFVFAILAISSVS------GGGHRCRGS 27 (43)
T ss_pred ehHHHHhhhhccc------ccccccCCC
Confidence 3445566667665 334567543
No 27
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=24.22 E-value=88 Score=18.26 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=12.0
Q ss_pred CcchhHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLF 16 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~ 16 (112)
||.|-+.|++-+++++
T Consensus 1 MEvn~l~fiAt~Lfi~ 16 (33)
T TIGR03038 1 MEVNILGFIATLLFIL 16 (33)
T ss_pred CcccHHHHHHHHHHHH
Confidence 8889888877665554
No 28
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.33 E-value=85 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.467 Sum_probs=11.2
Q ss_pred cchhHHHHHHHHHHHHHHhhh
Q 033717 2 EIDMKKFCSLCLLLFAVSSVT 22 (112)
Q Consensus 2 ~~~~~~~~~l~~ll~~~~~~~ 22 (112)
|||+.++.=.+|+||++-|++
T Consensus 3 ~initPlIDVvflLLiFFmvt 23 (121)
T TIGR02804 3 GLNIVPFIDIMLVLLAIVLII 23 (121)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 677777754444444433333
No 29
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=22.74 E-value=66 Score=25.60 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhh
Q 033717 10 SLCLLLFAVSSVTA 23 (112)
Q Consensus 10 ~l~~ll~~~~~~~~ 23 (112)
+|+||+|++||+++
T Consensus 27 LL~FFVlL~smS~v 40 (257)
T PRK08457 27 LLALFIALYAISAV 40 (257)
T ss_pred HHHHHHHHHHHHhc
Confidence 33444444555554
No 30
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=22.42 E-value=71 Score=22.19 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHHHHHHhh
Q 033717 2 EIDMKKFCSLCLLLFAVSSV 21 (112)
Q Consensus 2 ~~~~~~~~~l~~ll~~~~~~ 21 (112)
|||+.++.=.+|+||++-|+
T Consensus 4 ~inltPlIDVvFlLLiFFmv 23 (129)
T TIGR02801 4 EINVVPYVDVMLVLLIIFMV 23 (129)
T ss_pred ccccccHHHHHHHHHHHHHh
Confidence 56777664444444443333
No 31
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=21.94 E-value=65 Score=25.35 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhhh
Q 033717 10 SLCLLLFAVSSVTA 23 (112)
Q Consensus 10 ~l~~ll~~~~~~~~ 23 (112)
+|+||+|++||+++
T Consensus 29 LL~FFVlL~smS~~ 42 (252)
T PRK06667 29 LLCFFVMLFTTNDV 42 (252)
T ss_pred HHHHHHHHHHhhhc
Confidence 33344444555543
No 32
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=21.93 E-value=1e+02 Score=18.19 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=11.7
Q ss_pred CcchhHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLF 16 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~ 16 (112)
||.|-+.|++-+|+++
T Consensus 1 MevN~lgfiAt~Lfi~ 16 (35)
T PRK04989 1 MEVNDLGFVASLLFVL 16 (35)
T ss_pred CcchHHHHHHHHHHHH
Confidence 8888888876665554
No 33
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=21.16 E-value=1e+02 Score=19.50 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=12.0
Q ss_pred CcchhHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLF 16 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~ 16 (112)
||.|-+.|.+-+|+++
T Consensus 1 MEVN~lgfiAtaLFi~ 16 (50)
T PRK14094 1 METTNFGFVASLLFVG 16 (50)
T ss_pred CcchHHHHHHHHHHHH
Confidence 8899988877665554
No 34
>CHL00080 psbM photosystem II protein M
Probab=21.05 E-value=1.1e+02 Score=17.96 Aligned_cols=16 Identities=25% Similarity=0.629 Sum_probs=11.9
Q ss_pred CcchhHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLF 16 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~ 16 (112)
||.|-+.|.+-+|+++
T Consensus 1 MEvN~lgfiAt~LFi~ 16 (34)
T CHL00080 1 MEVNILAFIATALFIL 16 (34)
T ss_pred CcccHHHHHHHHHHHH
Confidence 8889888877665554
No 35
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=21.03 E-value=1.1e+02 Score=23.58 Aligned_cols=9 Identities=44% Similarity=0.600 Sum_probs=4.3
Q ss_pred cCCCCCCCC
Q 033717 72 LRRDAPVCN 80 (112)
Q Consensus 72 L~~d~vpC~ 80 (112)
-..|.-+|+
T Consensus 92 ~~~dacv~~ 100 (158)
T KOG4063|consen 92 PASDACVCG 100 (158)
T ss_pred CCCcccccc
Confidence 344445555
No 36
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=20.95 E-value=43 Score=25.39 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=7.0
Q ss_pred cCCCCccCc---hhhhhhh
Q 033717 29 YKHGECDGS---IAECGEL 44 (112)
Q Consensus 29 ~~~~~C~Gs---i~EC~~~ 44 (112)
..-..|.-+ ..+|+.+
T Consensus 27 ~~~~~C~~~~~~~~~cl~~ 45 (248)
T PF06585_consen 27 SYIKPCKRSDPNLNECLRE 45 (248)
T ss_dssp -S---BBTT----HHHHHH
T ss_pred cccCcCCCCCccHHHHHHH
Confidence 334578654 6778754
No 37
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.54 E-value=87 Score=17.09 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHH
Q 033717 5 MKKFCSLCLLLFAV 18 (112)
Q Consensus 5 ~~~~~~l~~ll~~~ 18 (112)
|+..++|++||.++
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 34445566666544
No 38
>PLN03207 stomagen; Provisional
Probab=20.36 E-value=2.5e+02 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=7.0
Q ss_pred chhhhhhHhhh
Q 033717 53 SETSKRVLAAA 63 (112)
Q Consensus 53 se~~RR~L~~~ 63 (112)
+..+||++-+.
T Consensus 61 ~k~srr~~igs 71 (113)
T PLN03207 61 SKSSRRLMIGS 71 (113)
T ss_pred chhhhhhhhcC
Confidence 44578887544
Done!