Query 033717
Match_columns 112
No_of_seqs 142 out of 226
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_M Photosystem II reaction 21.3 56 0.0019 18.6 1.9 16 1-16 1-16 (36)
2 2yev_C CAA3-type cytochrome ox 20.7 31 0.0011 22.0 0.0 19 7-25 37-55 (66)
3 1vf5_H Protein PET N; photosyn 15.3 1.5E+02 0.0051 16.0 2.7 21 1-21 1-22 (29)
4 3sob_H Antibody heavy chain, l 13.8 39 0.0013 23.8 0.0 18 1-18 1-18 (256)
5 2j6e_L IGM, FAB light chain; a 13.6 40 0.0014 22.7 0.0 14 5-18 1-14 (234)
6 3bx4_B Aggretin beta chain; to 13.5 40 0.0014 21.9 0.0 12 5-16 1-12 (146)
7 3nb3_A Outer membrane protein 13.3 37 0.0013 25.5 -0.2 8 5-12 1-8 (346)
8 1q90_N Cytochrome B6F complex 13.3 1.7E+02 0.006 16.0 2.6 21 1-21 3-24 (31)
9 4a2l_A BT_4663, two-component 13.1 42 0.0014 28.0 0.0 25 1-27 1-25 (795)
10 1co7_I BPTI, bovine pancreatic 12.2 46 0.0016 21.9 0.0 6 5-10 2-7 (99)
No 1
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=21.28 E-value=56 Score=18.59 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=11.4
Q ss_pred CcchhHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLF 16 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~ 16 (112)
||.|-+.|++-+|+++
T Consensus 1 MEVn~l~fiAt~Lfi~ 16 (36)
T 3arc_M 1 MEVNQLGLIATALFVL 16 (36)
T ss_dssp CCCCTTHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 7888888876655554
No 2
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=20.72 E-value=31 Score=22.02 Aligned_cols=19 Identities=32% Similarity=0.439 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 033717 7 KFCSLCLLLFAVSSVTAAA 25 (112)
Q Consensus 7 ~~~~l~~ll~~~~~~~~~~ 25 (112)
+|..+++++..++++++++
T Consensus 37 r~i~f~LllIiL~a~tva~ 55 (66)
T 2yev_C 37 RFVLFMLLLILLAAGTVAL 55 (66)
Confidence 5666666666667777643
No 3
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=15.29 E-value=1.5e+02 Score=16.03 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=10.9
Q ss_pred CcchhHHHHHHH-HHHHHHHhh
Q 033717 1 MEIDMKKFCSLC-LLLFAVSSV 21 (112)
Q Consensus 1 ~~~~~~~~~~l~-~ll~~~~~~ 21 (112)
|+|--..|..|+ ++-|.+|++
T Consensus 1 mdivsl~WaalmvvftfSlslV 22 (29)
T 1vf5_H 1 MEIDVLGWVALLVVFTWSIAMV 22 (29)
T ss_dssp --CTTHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHhheeeeEE
Confidence 455556666665 445555655
No 4
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=13.79 E-value=39 Score=23.79 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLFAV 18 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~~~ 18 (112)
|..+|.+++.+++|++.+
T Consensus 1 m~~~m~~~~~~l~ll~~~ 18 (256)
T 3sob_H 1 MKKNIAFLLASMFVFSIA 18 (256)
T ss_dssp ------------------
T ss_pred CeeehhHHHHHHHHHHHc
Confidence 445666655555444433
No 5
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=13.56 E-value=40 Score=22.72 Aligned_cols=14 Identities=36% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH
Q 033717 5 MKKFCSLCLLLFAV 18 (112)
Q Consensus 5 ~~~~~~l~~ll~~~ 18 (112)
|++++.|++||+.+
T Consensus 1 M~~~~~ll~ll~~~ 14 (234)
T 2j6e_L 1 MAGFPLLLTLLTHC 14 (234)
T ss_dssp --------------
T ss_pred CchhHHHHHHHHhh
Confidence 44555444444433
No 6
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=13.47 E-value=40 Score=21.86 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 033717 5 MKKFCSLCLLLF 16 (112)
Q Consensus 5 ~~~~~~l~~ll~ 16 (112)
|.+|+.+.++||
T Consensus 1 M~~~~~~~~~ll 12 (146)
T 3bx4_B 1 MGRFIFVSFGLL 12 (146)
T ss_dssp ------------
T ss_pred CceeHHHHHHHH
Confidence 455555443333
No 7
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=13.30 E-value=37 Score=25.48 Aligned_cols=8 Identities=38% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHH
Q 033717 5 MKKFCSLC 12 (112)
Q Consensus 5 ~~~~~~l~ 12 (112)
||++++++
T Consensus 1 MKk~ll~~ 8 (346)
T 3nb3_A 1 MKKTAIAI 8 (346)
T ss_dssp --------
T ss_pred CchhHHHH
Confidence 55554433
No 8
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=13.30 E-value=1.7e+02 Score=15.99 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=11.0
Q ss_pred CcchhHHHHHHH-HHHHHHHhh
Q 033717 1 MEIDMKKFCSLC-LLLFAVSSV 21 (112)
Q Consensus 1 ~~~~~~~~~~l~-~ll~~~~~~ 21 (112)
|.|--..|.+|+ ++-|.+|.+
T Consensus 3 mdivsl~WaalmvvfTfSlslV 24 (31)
T 1q90_N 3 PAIVQIGWAATCVMFSFSLSLV 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHhheeeEEE
Confidence 344445666555 444445555
No 9
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=13.13 E-value=42 Score=27.97 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhhhh
Q 033717 1 MEIDMKKFCSLCLLLFAVSSVTAAAKE 27 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~~~~~~~~~~~~ 27 (112)
|.+ |++++.|+|+|+ +++.++.|+.
T Consensus 1 ~~~-~~~~~~~~~~~~-~~~~~~~aq~ 25 (795)
T 4a2l_A 1 MSK-LKKIVIYLFFLC-LGMHSAFSET 25 (795)
T ss_dssp ---------------------------
T ss_pred Chh-hHHHHHHHHHHH-HhhhHhhccc
Confidence 456 787776665544 4443344443
No 10
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=12.24 E-value=46 Score=21.86 Aligned_cols=6 Identities=33% Similarity=1.027 Sum_probs=0.0
Q ss_pred hHHHHH
Q 033717 5 MKKFCS 10 (112)
Q Consensus 5 ~~~~~~ 10 (112)
|.++++
T Consensus 2 m~~~~l 7 (99)
T 1co7_I 2 MSRLCL 7 (99)
T ss_dssp ------
T ss_pred cchHHH
Confidence 445444
Done!