Query 033717
Match_columns 112
No_of_seqs 142 out of 226
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 08:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033717.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033717hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 50.1 2.5 0.00018 21.3 0.8 16 86-104 11-26 (27)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 20.6 47 0.0034 16.3 2.7 19 3-21 1-20 (27)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 18.5 33 0.0024 18.2 1.9 16 1-16 1-16 (36)
4 d2axtk1 f.23.36.1 (K:10-46) Ph 16.2 38 0.0027 18.0 1.8 16 3-18 13-28 (37)
5 d2dw4a1 a.4.1.18 (A:172-273) L 8.2 88 0.0064 19.1 1.9 15 60-75 85-99 (102)
6 d1clvi_ g.3.2.1 (I:) alpha-amy 8.1 47 0.0034 16.8 0.4 6 75-80 13-18 (32)
7 d2dw4a3 d.16.1.5 (A:655-763) L 7.1 76 0.0055 17.7 1.1 10 96-105 98-107 (109)
8 d1ansa_ g.11.1.1 (A:) Neurotox 6.6 1.6E+02 0.012 14.1 2.1 18 88-106 7-24 (27)
9 d1ce3a_ g.69.1.1 (A:) Multidom 5.4 2.6E+02 0.019 15.6 2.8 17 89-105 14-30 (54)
10 d2v5za2 d.16.1.5 (A:290-401) M 5.1 1.2E+02 0.0089 17.0 1.2 11 98-108 102-112 (112)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=50.08 E-value=2.5 Score=21.33 Aligned_cols=16 Identities=31% Similarity=0.887 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 033717 86 DPYSKSCLPPQSNRYQRGC 104 (112)
Q Consensus 86 ~sYy~~C~~~~aNpY~RGC 104 (112)
.+| ++|. .-|||+.-|
T Consensus 11 tsy-nccr--scnpytkrc 26 (27)
T d1omca_ 11 TSY-NCCR--SCNPYTKRC 26 (27)
T ss_dssp TTT-CBSS--CEETTTTEE
T ss_pred ccc-chhc--ccCcccccc
Confidence 454 5665 478998655
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.62 E-value=47 Score=16.29 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=11.6
Q ss_pred chhHHHHHHHHHH-HHHHhh
Q 033717 3 IDMKKFCSLCLLL-FAVSSV 21 (112)
Q Consensus 3 ~~~~~~~~l~~ll-~~~~~~ 21 (112)
|+.+.|++|+... -.++|+
T Consensus 1 i~~lgwv~llvvftwsiamv 20 (27)
T d2e74h1 1 IDVLGWVALLVVFTWSIAMV 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHhHHHHHhhheeeeE
Confidence 5677887766433 345665
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.51 E-value=33 Score=18.16 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=10.9
Q ss_pred CcchhHHHHHHHHHHH
Q 033717 1 MEIDMKKFCSLCLLLF 16 (112)
Q Consensus 1 ~~~~~~~~~~l~~ll~ 16 (112)
||.|-+.|.+-.++++
T Consensus 1 MevN~Lg~iAt~LFil 16 (36)
T d2axtm1 1 MEVNQLGLIATALFVL 16 (36)
T ss_dssp CCCCTTHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 7888888866554443
No 4
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.23 E-value=38 Score=18.00 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=9.3
Q ss_pred chhHHHHHHHHHHHHH
Q 033717 3 IDMKKFCSLCLLLFAV 18 (112)
Q Consensus 3 ~~~~~~~~l~~ll~~~ 18 (112)
||.....-++||||++
T Consensus 13 vdvlPiIPv~f~lLaf 28 (37)
T d2axtk1 13 VDVLPVIPVLFLALAF 28 (37)
T ss_dssp HHHGGGHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 3555555666666654
No 5
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.17 E-value=88 Score=19.14 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.0
Q ss_pred HhhhcccccccccCCC
Q 033717 60 LAAAHKFISPGALRRD 75 (112)
Q Consensus 60 L~~~~~yISYgAL~~d 75 (112)
|... .||+||..++-
T Consensus 85 L~~~-G~INfGv~~r~ 99 (102)
T d2dw4a1 85 LERH-GLINFGIYKRI 99 (102)
T ss_dssp HHHT-TSSSCSSCBCC
T ss_pred HHHc-CceeeCcCcCC
Confidence 4444 89999988764
No 6
>d1clvi_ g.3.2.1 (I:) alpha-amylase inhibitor (AAI) {Prince's feather (Amaranthus hypochondriacus) [TaxId: 28502]}
Probab=8.14 E-value=47 Score=16.83 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=3.8
Q ss_pred CCCCCC
Q 033717 75 DAPVCN 80 (112)
Q Consensus 75 d~vpC~ 80 (112)
|.+||-
T Consensus 13 dgvpcc 18 (32)
T d1clvi_ 13 DGVPCC 18 (32)
T ss_dssp HCCCBC
T ss_pred CCcccc
Confidence 667754
No 7
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.12 E-value=76 Score=17.70 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=8.4
Q ss_pred CCCCCCCCCC
Q 033717 96 QSNRYQRGCA 105 (112)
Q Consensus 96 ~aNpY~RGCs 105 (112)
..+||+||+-
T Consensus 98 ~~dp~~~GsY 107 (109)
T d2dw4a3 98 RADPWARGSY 107 (109)
T ss_dssp TTCTTTSSSC
T ss_pred CCCCccCEec
Confidence 5799999984
No 8
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=6.63 E-value=1.6e+02 Score=14.08 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 033717 88 YSKSCLPPQSNRYQRGCAA 106 (112)
Q Consensus 88 Yy~~C~~~~aNpY~RGCs~ 106 (112)
|.+.||= -.|-|..||+-
T Consensus 7 ywggcpw-gqncypegcsg 24 (27)
T d1ansa_ 7 YWGGCPW-GQNCYPEGCSG 24 (27)
T ss_dssp TTTTCSS-SCSSCSSCSSS
T ss_pred cccCCcc-ccccccCcccC
Confidence 3455653 46778888874
No 9
>d1ce3a_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=5.43 E-value=2.6e+02 Score=15.58 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 033717 89 SKSCLPPQSNRYQRGCA 105 (112)
Q Consensus 89 y~~C~~~~aNpY~RGCs 105 (112)
|.-||.....++++.|.
T Consensus 14 y~iCPrSe~k~~~~iCt 30 (54)
T d1ce3a_ 14 YGVCPRSEEKKNDRICT 30 (54)
T ss_dssp EEECSSCCCCSCCCCSC
T ss_pred eeECCCccccccCCccc
Confidence 46677655666666664
No 10
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.14 E-value=1.2e+02 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=0.0
Q ss_pred CCCCCCCCCcc
Q 033717 98 NRYQRGCAAYK 108 (112)
Q Consensus 98 NpY~RGCs~i~ 108 (112)
+||+||+-..+
T Consensus 102 dp~~~GsYs~~ 112 (112)
T d2v5za2 102 EQYSGGCYTTY 112 (112)
T ss_dssp CTTTCSSSCBC
T ss_pred CCccCcccccc
Done!