BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033718
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38848|PEX28_YEAST Peroxisomal membrane protein PEX28 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PEX28 PE=1 SV=1
Length = 579
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 16 QHSKPSTRRWHFVGTLISIFFLLLSVFFSWCFLVFVPIFGYGFAWYSHFFVEGNVPATFG 75
Q+ + ST+R+ F G L+ +F +LS F +W ++ IF + Y H
Sbjct: 384 QNEECSTKRF-FTGFLLIVFLKILSPFVNWSYV--CSIFAWCLLIYMH---------PRA 431
Query: 76 HPFWSVLCDFKMFGLMLTGKMDREIKRLGKR 106
HP K+ TG M +E K L KR
Sbjct: 432 HP--------KIISFFKTGTMGKEYKNLKKR 454
>sp|Q7VVU3|METE_BORPE 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=metE PE=3 SV=1
Length = 764
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 48 LVFVPIFGYGFAWYSHFF----VEGNVPATFGHP 77
+ FVP+ FAWY H + G VPA FGHP
Sbjct: 55 VAFVPV--GDFAWYDHILEWTTLLGAVPARFGHP 86
>sp|Q7W791|METE_BORPA 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=metE PE=3 SV=2
Length = 764
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 48 LVFVPIFGYGFAWYSHFF----VEGNVPATFGHP 77
+ FVP+ FAWY H + G VPA FGHP
Sbjct: 55 VAFVPV--GDFAWYDHILEWTTLLGAVPARFGHP 86
>sp|Q7WKM7|METE_BORBR 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=metE PE=3 SV=1
Length = 764
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 48 LVFVPIFGYGFAWYSHFF----VEGNVPATFGHP 77
+ FVP+ FAWY H + G VPA FGHP
Sbjct: 55 VAFVPV--GDFAWYDHILEWTTLLGAVPARFGHP 86
>sp|P23622|CYS14_NEUCR Sulfate permease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cys-14
PE=2 SV=3
Length = 819
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 23 RRWHFVGTLISIFFLLLSVFFSWCFLVFVPIFGYGFAWYSHFFVEGNVPATFGH 76
R W FV TL +F ++L + SW V +HF + G+VP+ F H
Sbjct: 270 RAWFFVSTLRMVFIIILYILVSWLVNRHVKD-----PKKAHFKILGHVPSGFQH 318
>sp|Q7Z2K6|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1 OS=Homo sapiens GN=ERMP1
PE=1 SV=2
Length = 904
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 30 TLISIFFLLLSVFFSWCFLVFVPIFGYGFAWYSHFFVE 67
TLIS F L++V VF+ + G +WY+HF+V
Sbjct: 457 TLISWFTSLVTVLI---IAVFISLIGQSLSWYNHFYVS 491
>sp|B5BJH0|RHAT_SALPK L-rhamnose-proton symporter OS=Salmonella paratyphi A (strain
AKU_12601) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|Q5PKI0|RHAT_SALPA L-rhamnose-proton symporter OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B5QWY6|RHAT_SALEP L-rhamnose-proton symporter OS=Salmonella enteritidis PT4 (strain
P125109) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B5FPP7|RHAT_SALDC L-rhamnose-proton symporter OS=Salmonella dublin (strain
CT_02021853) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|P27135|RHAT_SALTY L-rhamnose-proton symporter OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B4TPR1|RHAT_SALSV L-rhamnose-proton symporter OS=Salmonella schwarzengrund (strain
CVM19633) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|C0Q3L6|RHAT_SALPC L-rhamnose-proton symporter OS=Salmonella paratyphi C (strain
RKS4594) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|A9MZD0|RHAT_SALPB L-rhamnose-proton symporter OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B4SZZ5|RHAT_SALNS L-rhamnose-proton symporter OS=Salmonella newport (strain SL254)
GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B4TBY5|RHAT_SALHS L-rhamnose-proton symporter OS=Salmonella heidelberg (strain SL476)
GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B5RFC1|RHAT_SALG2 L-rhamnose-proton symporter OS=Salmonella gallinarum (strain 287/91
/ NCTC 13346) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|Q57HG6|RHAT_SALCH L-rhamnose-proton symporter OS=Salmonella choleraesuis (strain
SC-B67) GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|B5F0N1|RHAT_SALA4 L-rhamnose-proton symporter OS=Salmonella agona (strain SL483)
GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
>sp|Q8Z2V6|RHAT_SALTI L-rhamnose-proton symporter OS=Salmonella typhi GN=rhaT PE=3 SV=1
Length = 344
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 57 GFAWYSHFFV----EGNVPATFGHPFWSVLCDFKMFGLMLTGKMDREIKRLGKRPV 108
G WY FF +PA + + W + F + L G + +E K G+RPV
Sbjct: 266 GLMWYLQFFFYAWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPV 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.148 0.530
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,340,786
Number of Sequences: 539616
Number of extensions: 1643307
Number of successful extensions: 5237
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 5233
Number of HSP's gapped (non-prelim): 31
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)