Query 033718
Match_columns 112
No_of_seqs 104 out of 229
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4323 Predicted membrane pro 100.0 8.9E-53 1.9E-57 295.6 4.0 96 2-97 8-104 (105)
2 PF06127 DUF962: Protein of un 100.0 5.9E-37 1.3E-41 212.1 9.6 94 3-96 1-95 (95)
3 COG4539 Predicted membrane pro 98.6 1.6E-08 3.5E-13 77.8 1.9 97 5-101 3-163 (180)
4 KOG3292 Predicted membrane pro 97.5 0.00023 5E-09 55.5 5.9 45 48-92 112-157 (196)
5 PF07503 zf-HYPF: HypF finger; 55.9 4.6 0.0001 23.6 0.4 19 13-31 5-23 (35)
6 PF09964 DUF2198: Uncharacteri 55.8 34 0.00074 23.3 4.6 17 25-41 23-39 (74)
7 PRK08383 putative monovalent c 47.9 75 0.0016 24.2 6.0 52 45-97 28-94 (168)
8 PF06796 NapE: Periplasmic nit 44.3 50 0.0011 21.3 3.8 14 46-59 30-43 (56)
9 PF11239 DUF3040: Protein of u 42.0 1E+02 0.0022 20.3 5.3 12 27-38 43-54 (82)
10 PRK08382 putative monovalent c 41.1 96 0.0021 24.4 5.8 72 27-98 35-127 (201)
11 TIGR02972 TMAO_torE trimethyla 39.6 70 0.0015 20.1 3.8 14 46-59 22-35 (47)
12 PF11137 DUF2909: Protein of u 39.5 89 0.0019 20.4 4.5 27 12-38 21-47 (63)
13 PLN02797 phosphatidyl-N-dimeth 39.3 66 0.0014 25.0 4.5 43 26-75 117-160 (164)
14 TIGR02973 nitrate_rd_NapE peri 38.9 75 0.0016 19.5 3.8 15 45-59 16-30 (42)
15 PRK01024 Na(+)-translocating N 38.8 73 0.0016 28.7 5.2 46 44-89 380-433 (503)
16 PF04342 DUF486: Protein of un 35.8 16 0.00036 26.5 0.7 15 57-71 15-29 (108)
17 PRK08965 putative monovalent c 35.6 1.6E+02 0.0035 21.8 6.0 71 23-95 4-87 (162)
18 COG4459 NapE Periplasmic nitra 35.2 60 0.0013 21.5 3.2 16 44-59 31-46 (62)
19 PF10112 Halogen_Hydrol: 5-bro 32.6 1.3E+02 0.0028 22.6 5.1 16 26-41 11-26 (199)
20 PF09838 DUF2065: Uncharacteri 32.2 1E+02 0.0022 19.5 3.8 34 6-39 19-52 (57)
21 PF14659 Phage_int_SAM_3: Phag 30.3 49 0.0011 19.1 2.1 14 5-18 1-14 (58)
22 PF07110 EthD: EthD domain; I 30.3 35 0.00077 21.6 1.5 22 5-26 4-25 (95)
23 PF06738 DUF1212: Protein of u 27.6 1.4E+02 0.0031 21.8 4.6 51 20-71 100-150 (193)
24 PRK09697 protein secretion pro 26.6 45 0.00098 24.9 1.7 39 16-59 15-53 (139)
25 PF11457 DUF3021: Protein of u 24.2 1.1E+02 0.0024 21.2 3.3 51 19-69 71-127 (136)
26 KOG1183 N-acetylglucosaminyltr 24.0 2.2E+02 0.0048 26.3 5.8 46 25-82 464-519 (623)
27 KOG3386 Copper transporter [In 24.0 1.9E+02 0.0042 21.7 4.7 45 23-71 92-143 (155)
28 PF09726 Macoilin: Transmembra 23.7 1.3E+02 0.0028 27.8 4.4 34 6-41 51-84 (697)
29 PF11127 DUF2892: Protein of u 23.4 1.9E+02 0.0042 17.8 4.1 8 57-64 45-52 (66)
30 PF04145 Ctr: Ctr copper trans 22.7 67 0.0014 22.3 1.9 38 25-66 107-144 (144)
31 PF03579 SHP: Small hydrophobi 22.4 1.6E+02 0.0035 19.5 3.5 29 7-41 12-40 (64)
32 COG3169 Uncharacterized protei 22.0 84 0.0018 23.0 2.3 15 56-71 22-36 (116)
33 PF10031 DUF2273: Small integr 21.1 2.2E+02 0.0048 17.6 5.6 40 13-58 3-45 (51)
34 PRK12652 putative monovalent c 20.5 5.3E+02 0.011 21.8 7.3 20 45-64 189-208 (357)
No 1
>COG4323 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.9e-53 Score=295.56 Aligned_cols=96 Identities=41% Similarity=0.868 Sum_probs=91.8
Q ss_pred CCCcHHHHHHHHHHhcCCcchhhHHhHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhheeecCCCCCccchhHH
Q 033718 2 NFRSLDEFWAFYVNQHSKPSTRRWHFVGTLISIFFLLLSVF-FSWCFLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWS 80 (112)
Q Consensus 2 ~~~sf~eF~p~YL~eH~~~~~R~lH~iGt~l~~~~l~~~~~-~~~~~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~S 80 (112)
||+||+|||||||.||+||+|||||++|++|++++++.++. +.|+|++++|++||||||+|||.||||||||||||+||
T Consensus 8 Rf~SFAeFYPyYl~EH~N~vcRRLH~vGs~LvlvcL~~~Vf~~~w~wllAapv~GYgFAWvGHFvFEKNRPATFkyPvyS 87 (105)
T COG4323 8 RFKSFAEFYPYYLTEHANPVCRRLHVVGSSLVLVCLVLGVFRGDWRWLLAAPVIGYGFAWVGHFVFEKNRPATFKYPVYS 87 (105)
T ss_pred HhhhHHHhchHHHHhccchhHhhhhhhhhHHHHHHHHHHHHhcchHHHHHhhhhcccceeeeeeeeecCCCccccccHHH
Confidence 79999999999999999999999999999999999886554 47999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHcCCCc
Q 033718 81 VLCDFKMFGLMLTGKMD 97 (112)
Q Consensus 81 l~~D~~M~~~~L~G~~~ 97 (112)
||+||+|++|..+||++
T Consensus 88 lMGDwvm~~d~~tGri~ 104 (105)
T COG4323 88 LMGDWVMWFDTVTGRIK 104 (105)
T ss_pred hhccceeeeehhccccc
Confidence 99999999999999985
No 2
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=100.00 E-value=5.9e-37 Score=212.11 Aligned_cols=94 Identities=38% Similarity=0.680 Sum_probs=88.7
Q ss_pred CCcHHHHHHHHHHhcCCcchhhHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhheeecCCCCCccchhHHh
Q 033718 3 FRSLDEFWAFYVNQHSKPSTRRWHFVGTLISIFFLLLSVFF-SWCFLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWSV 81 (112)
Q Consensus 3 ~~sf~eF~p~YL~eH~~~~~R~lH~iGt~l~~~~l~~~~~~-~~~~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~Sl 81 (112)
|+|++|+|++|+++||||+||++|++|+++++.++++.+.. +++++++++++||++||+||++|||||||+|++|+||+
T Consensus 1 ~~~~~~~~~~Y~~~H~~~~n~~lH~igvp~~~~~~~~~~~~~~~~~~l~~~~~g~~~q~~GH~~~E~~~Pa~~~~p~~sl 80 (95)
T PF06127_consen 1 MKSLEEFFAFYLSYHRNPINRALHFIGVPLIIFSLLLLLARIPWWLALAVFVVGWGLQFIGHFFFEKNKPAFFDNPLQSL 80 (95)
T ss_pred CcCHHHHHHHHHHHcCCHhhHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhHHHHHcCCCcchhchHHHH
Confidence 68999999999999999999999999999999988765544 68899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCCC
Q 033718 82 LCDFKMFGLMLTGKM 96 (112)
Q Consensus 82 ~~D~~M~~~~L~G~~ 96 (112)
++|..|++++++||+
T Consensus 81 ~~~p~~~~~~l~~~~ 95 (95)
T PF06127_consen 81 LIDPFFVWLELLFRL 95 (95)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999985
No 3
>COG4539 Predicted membrane protein [Function unknown]
Probab=98.61 E-value=1.6e-08 Score=77.80 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHhcCCcchhhHHhHhHHHHHHHHHHHH-------------------------------------------
Q 033718 5 SLDEFWAFYVNQHSKPSTRRWHFVGTLISIFFLLLSV------------------------------------------- 41 (112)
Q Consensus 5 sf~eF~p~YL~eH~~~~~R~lH~iGt~l~~~~l~~~~------------------------------------------- 41 (112)
+..+=+.+|-.-|+||+|-..|++|+++.+++..+.+
T Consensus 3 ~Ls~~lsfYaaYH~nprNI~iH~i~IP~ills~avllhr~vi~l~~~~l~is~a~ll~va~~iFYl~Ldl~~Gll~~~ll 82 (180)
T COG4539 3 DLSDHLSFYAAYHHNPRNILIHFIGIPTILLSGAVLLHRPVIGLSNSKLQISPALLLSVAFSIFYLRLDLPFGLLMGVLL 82 (180)
T ss_pred cHHHHHHHHHHHhcCCcceeeeeecchHHHHHHHHHhhcceeeecCCcceecHHHHHHHHHHHHheeeccchhHHHHHHH
Confidence 3455677888889999999999999998766432110
Q ss_pred -HHHH--------------HHHHHHHHhhhhhhhhhhheeecCCCCCccchhHHhh-hhHHHH-----HHHHcCCCcHHH
Q 033718 42 -FFSW--------------CFLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWSVL-CDFKMF-----GLMLTGKMDREI 100 (112)
Q Consensus 42 -~~~~--------------~~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~Sl~-~D~~M~-----~~~L~G~~~~~~ 100 (112)
...| ..-+.++++||.+|++||=.|||.|||.-.+-.-|++ +..=.+ +.=+.|++++|+
T Consensus 83 ~l~~wi~~~l~a~~t~a~l~~~lglfvIgWI~QFVGHgvfEkRkPAlvDnL~qsLviaPlF~l~Et~f~lG~~p~l~~ev 162 (180)
T COG4539 83 LLLVWILLALAAHRTDAWLKQGLGLFVIGWIFQFVGHGVFEKRKPALVDNLVQSLVIAPLFILAETLFKLGLRPRLKAEV 162 (180)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCceeeeehHHHHhccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 0011 1124567899999999998899999998887777643 333222 233567777776
Q ss_pred H
Q 033718 101 K 101 (112)
Q Consensus 101 ~ 101 (112)
|
T Consensus 163 ~ 163 (180)
T COG4539 163 E 163 (180)
T ss_pred H
Confidence 4
No 4
>KOG3292 consensus Predicted membrane protein [Function unknown]
Probab=97.53 E-value=0.00023 Score=55.49 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHhhhhhhhhhhheeecCCCCCccchhHH-hhhhHHHHHHHH
Q 033718 48 LVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWS-VLCDFKMFGLML 92 (112)
Q Consensus 48 l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~S-l~~D~~M~~~~L 92 (112)
.++.-+++|..|++||=.|||.+||...+-+.| +|+.+=.+.+.+
T Consensus 112 g~~s~licWi~QFvGHGvFEKR~PALlDNLlQsl~maP~Fv~lE~l 157 (196)
T KOG3292|consen 112 GLASQLICWIGQFVGHGVFEKRAPALLDNLLQSLLMAPFFVLLEVL 157 (196)
T ss_pred HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHhHHHHHHHHH
Confidence 345557999999999999999999999999999 567776666655
No 5
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=55.87 E-value=4.6 Score=23.58 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHhcCCcchhhHHhHhHH
Q 033718 13 YVNQHSKPSTRRWHFVGTL 31 (112)
Q Consensus 13 YL~eH~~~~~R~lH~iGt~ 31 (112)
=++|..+|.+|+.|.-.++
T Consensus 5 C~~Ey~~p~~RR~~~~~is 23 (35)
T PF07503_consen 5 CLKEYFDPSNRRFHYQFIS 23 (35)
T ss_dssp HHHHHCSTTSTTTT-TT--
T ss_pred HHHHHcCCCCCcccCcCcc
Confidence 3688999999999987664
No 6
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=55.82 E-value=34 Score=23.35 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=12.5
Q ss_pred HHhHhHHHHHHHHHHHH
Q 033718 25 WHFVGTLISIFFLLLSV 41 (112)
Q Consensus 25 lH~iGt~l~~~~l~~~~ 41 (112)
-|++|+.+.++++++..
T Consensus 23 n~~vg~~lt~~Li~ASv 39 (74)
T PF09964_consen 23 NHYVGTILTVALIAASV 39 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788888888777654
No 7
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=47.87 E-value=75 Score=24.16 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhhhhhhhheeecCCCCCccchhH---------------HhhhhHHHHHHHHcCCCc
Q 033718 45 WCFLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFW---------------SVLCDFKMFGLMLTGKMD 97 (112)
Q Consensus 45 ~~~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~---------------Sl~~D~~M~~~~L~G~~~ 97 (112)
+.-++...++|+...|+-+-+.+...| .+.+|.- .+.+++.+.+.+++.+++
T Consensus 28 ~~~l~~Gll~~~~v~~l~~~~~~~~~~-~~~~p~~~l~~~~~~~~~~l~eiv~an~~Va~~vl~p~~~ 94 (168)
T PRK08383 28 PEELIAGLIFAAIVGYATRNIIGEKAT-RFLNPIRWLLFIAYAFGPLFWGMVKANLDVAYRVITGKIR 94 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 556777888999999998886654323 2334432 345666677777776543
No 8
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=44.34 E-value=50 Score=21.34 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhhh
Q 033718 46 CFLVFVPIFGYGFA 59 (112)
Q Consensus 46 ~~l~~~~v~GYg~A 59 (112)
-.+..+.|.||||+
T Consensus 30 PiL~v~~Vg~YGF~ 43 (56)
T PF06796_consen 30 PILAVAFVGGYGFI 43 (56)
T ss_pred HHHHHHHHHHHHHH
Confidence 34567789999986
No 9
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=42.04 E-value=1e+02 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=5.8
Q ss_pred hHhHHHHHHHHH
Q 033718 27 FVGTLISIFFLL 38 (112)
Q Consensus 27 ~iGt~l~~~~l~ 38 (112)
..|..+.++.+.
T Consensus 43 ~~~~~~~v~gl~ 54 (82)
T PF11239_consen 43 VLGVLLVVVGLA 54 (82)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 10
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=41.15 E-value=96 Score=24.36 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=41.1
Q ss_pred hHhHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhhhheeecCCC--CC------ccchhH-----------HhhhhH
Q 033718 27 FVGTLISIFFLLLSVFFS--WCFLVFVPIFGYGFAWYSHFFVEGNVP--AT------FGHPFW-----------SVLCDF 85 (112)
Q Consensus 27 ~iGt~l~~~~l~~~~~~~--~~~l~~~~v~GYg~AW~GHf~fEkNrP--At------F~~P~~-----------Sl~~D~ 85 (112)
++.+.+.++++-.++.+. +.-++...++|+...|+-+=+...+.+ .. ++.+.+ -+.+++
T Consensus 35 ~~~~~llLf~~WllLsg~~s~~~l~lG~i~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~eivkANi 114 (201)
T PRK08382 35 FVLTWLILLAFWVIISGDLSPRGLILGALTTLIIASYMRDFLTEDIRRSGHLLWKILYFALIYLPQYLIIMAFRLLESNL 114 (201)
T ss_pred HHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544555553 556677778888888877665543321 11 111111 136788
Q ss_pred HHHHHHHcCCCcH
Q 033718 86 KMFGLMLTGKMDR 98 (112)
Q Consensus 86 ~M~~~~L~G~~~~ 98 (112)
.+.+.+|+.+++.
T Consensus 115 ~Va~~VL~~~i~P 127 (201)
T PRK08382 115 KVAKHVIFMDINP 127 (201)
T ss_pred HHHHHHhCCCCCC
Confidence 8888888855544
No 11
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=39.57 E-value=70 Score=20.06 Aligned_cols=14 Identities=43% Similarity=0.607 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhhh
Q 033718 46 CFLVFVPIFGYGFA 59 (112)
Q Consensus 46 ~~l~~~~v~GYg~A 59 (112)
-.+..+.|.||||.
T Consensus 22 PiLsV~~Vg~YGF~ 35 (47)
T TIGR02972 22 PILSVAGIGGYGFI 35 (47)
T ss_pred HHHHHHHHHHHHHH
Confidence 34567779999986
No 12
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=39.47 E-value=89 Score=20.44 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHHHhcCCcchhhHHhHhHHHHHHHHH
Q 033718 12 FYVNQHSKPSTRRWHFVGTLISIFFLL 38 (112)
Q Consensus 12 ~YL~eH~~~~~R~lH~iGt~l~~~~l~ 38 (112)
||+-+.+...+|..|..|.=.++.+++
T Consensus 21 ~~l~kd~~~~~rm~~~L~~RV~lS~~l 47 (63)
T PF11137_consen 21 FFLVKDKGSSKRMVKALGRRVGLSALL 47 (63)
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 566677778888888887755555433
No 13
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=39.34 E-value=66 Score=24.99 Aligned_cols=43 Identities=35% Similarity=0.610 Sum_probs=27.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheee-cCCCCCcc
Q 033718 26 HFVGTLISIFFLLLSVFFSWCFLVFVPIFGYGFAWYSHFFVE-GNVPATFG 75 (112)
Q Consensus 26 H~iGt~l~~~~l~~~~~~~~~~l~~~~v~GYg~AW~GHf~fE-kNrPAtF~ 75 (112)
-+.|+++.++..+.....+. .++=++||-++ .++| |.+|+|=.
T Consensus 117 mY~GStl~fLg~al~~p~~~---~~lW~lgYvfm----m~iEs~edp~tra 160 (164)
T PLN02797 117 QYVGSILSLLACLSWVPFQY---ILLWCLGYVFM----MFVESKEDPATRA 160 (164)
T ss_pred chhhHHHHHHHHHHHhhHHH---HHHHHHHHHHH----heeeccCCchhcc
Confidence 46799888887665444443 22336677766 4589 88898743
No 14
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=38.90 E-value=75 Score=19.47 Aligned_cols=15 Identities=47% Similarity=1.017 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhhhh
Q 033718 45 WCFLVFVPIFGYGFA 59 (112)
Q Consensus 45 ~~~l~~~~v~GYg~A 59 (112)
+-.+....+.||||+
T Consensus 16 ~PiLsV~~V~~YGF~ 30 (42)
T TIGR02973 16 WPVLSVITVGGYGFA 30 (42)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334567779999986
No 15
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=38.83 E-value=73 Score=28.69 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhh---eeecC----CCCCcc-chhHHhhhhHHHHH
Q 033718 44 SWCFLVFVPIFGYGFAWYSHF---FVEGN----VPATFG-HPFWSVLCDFKMFG 89 (112)
Q Consensus 44 ~~~~l~~~~v~GYg~AW~GHf---~fEkN----rPAtF~-~P~~Sl~~D~~M~~ 89 (112)
.|+..++..+.-+..+|+=++ +.|+| .|+.|. .|.|-+++.=-|+.
T Consensus 380 sWripvs~l~g~~~~a~lf~~~~~~~~g~~g~~~p~~~~~~~~~HLlsGGlmfG 433 (503)
T PRK01024 380 SWRTMLSFGLGAFFTAWLFKIMSILIVGNAGAWAPAKFFIPAYRHLFLGGLAFG 433 (503)
T ss_pred eEEehHHHHHHHHHHHHHHHHhhhccccccccCCcccccccHHHHHHHHHHHHH
Confidence 377777777777777777666 45666 677787 89999888776664
No 16
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=35.84 E-value=16 Score=26.51 Aligned_cols=15 Identities=40% Similarity=0.975 Sum_probs=12.2
Q ss_pred hhhhhhhheeecCCC
Q 033718 57 GFAWYSHFFVEGNVP 71 (112)
Q Consensus 57 g~AW~GHf~fEkNrP 71 (112)
.+||.||--+..++|
T Consensus 15 TfAWYGHLK~~~~~p 29 (108)
T PF04342_consen 15 TFAWYGHLKFKSSKP 29 (108)
T ss_pred HHHHHHHhhccccCc
Confidence 689999998776665
No 17
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=35.57 E-value=1.6e+02 Score=21.80 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=41.0
Q ss_pred hhHHhHhHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhhhheeecCCCCCccchhHH-----------hhhhHHHHH
Q 033718 23 RRWHFVGTLISIFFLLLSVFFS--WCFLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWS-----------VLCDFKMFG 89 (112)
Q Consensus 23 R~lH~iGt~l~~~~l~~~~~~~--~~~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~S-----------l~~D~~M~~ 89 (112)
|.+-.+...+.+.++-.++++. +.-++...++|+...|+-+-+... ++ ..+.|... +.+++.+.+
T Consensus 4 ~~~~~~~~~~~l~~~W~lL~g~~~~~~l~~G~~~~~~v~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~eiv~a~~~Va~ 81 (162)
T PRK08965 4 RLLPQPLLSLWLALVWLLLNGSFSLGNLLLGLLLGLLIPLLLALLVPL-EG-RLRRPLALLRLLLVVLYDLVVSNIQVAW 81 (162)
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccCC-CC-cccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555653 566778889999999998875543 22 44555433 344555555
Q ss_pred HHHcCC
Q 033718 90 LMLTGK 95 (112)
Q Consensus 90 ~~L~G~ 95 (112)
.+++.+
T Consensus 82 ~vl~p~ 87 (162)
T PRK08965 82 LILRPG 87 (162)
T ss_pred HHcCCC
Confidence 555554
No 18
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=35.24 E-value=60 Score=21.46 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhhh
Q 033718 44 SWCFLVFVPIFGYGFA 59 (112)
Q Consensus 44 ~~~~l~~~~v~GYg~A 59 (112)
-|-++..++|.||||.
T Consensus 31 l~PilsV~~VG~yGFi 46 (62)
T COG4459 31 LFPILSVAFVGGYGFI 46 (62)
T ss_pred HHHHHHHHHhcchhHH
Confidence 3556677888899874
No 19
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.56 E-value=1.3e+02 Score=22.60 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=8.7
Q ss_pred HhHhHHHHHHHHHHHH
Q 033718 26 HFVGTLISIFFLLLSV 41 (112)
Q Consensus 26 H~iGt~l~~~~l~~~~ 41 (112)
+++|+.++++..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~ 26 (199)
T PF10112_consen 11 WILGVLIAAITFLVSF 26 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666544433
No 20
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=32.23 E-value=1e+02 Score=19.55 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCcchhhHHhHhHHHHHHHHHH
Q 033718 6 LDEFWAFYVNQHSKPSTRRWHFVGTLISIFFLLL 39 (112)
Q Consensus 6 f~eF~p~YL~eH~~~~~R~lH~iGt~l~~~~l~~ 39 (112)
+.+-|+..+.+=++--.+.+..+|-...++.+..
T Consensus 19 ~P~~~r~~l~~l~~~p~~~lR~~Gl~~~~~Gl~l 52 (57)
T PF09838_consen 19 APERWRRMLRQLAQLPDRQLRRIGLVSMVIGLVL 52 (57)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998887776553
No 21
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=30.32 E-value=49 Score=19.12 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHhcC
Q 033718 5 SLDEFWAFYVNQHS 18 (112)
Q Consensus 5 sf~eF~p~YL~eH~ 18 (112)
+|+|++..|++.++
T Consensus 1 Tf~~~~~~wl~~~~ 14 (58)
T PF14659_consen 1 TFSEFFEEWLEEYK 14 (58)
T ss_dssp BHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 68999999999987
No 22
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=30.27 E-value=35 Score=21.56 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHhcCCcchhhHH
Q 033718 5 SLDEFWAFYVNQHSKPSTRRWH 26 (112)
Q Consensus 5 sf~eF~p~YL~eH~~~~~R~lH 26 (112)
|-+||..||...|.....+...
T Consensus 4 s~eeF~~~~~~~H~pl~~~~~~ 25 (95)
T PF07110_consen 4 SPEEFHDYWREVHAPLVKRLPG 25 (95)
T ss_dssp -HHHHHHHHHHTHHHHHCCCCC
T ss_pred CHHHHHHHHHHhHHHHHHHhcc
Confidence 6789999999999855544443
No 23
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.58 E-value=1.4e+02 Score=21.81 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=38.7
Q ss_pred cchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhheeecCCC
Q 033718 20 PSTRRWHFVGTLISIFFLLLSVFFSWCFLVFVPIFGYGFAWYSHFFVEGNVP 71 (112)
Q Consensus 20 ~~~R~lH~iGt~l~~~~l~~~~~~~~~~l~~~~v~GYg~AW~GHf~fEkNrP 71 (112)
+-++.+..+|..++..++....-++|+-.+...++|-..+++..+ .+|.+-
T Consensus 100 ~y~~~~~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~-~~r~~~ 150 (193)
T PF06738_consen 100 RYPPWLVILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQL-LSRRRL 150 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHhccc
Confidence 577788888888887777766555688788888888888888888 555554
No 24
>PRK09697 protein secretion protein GspB; Provisional
Probab=26.62 E-value=45 Score=24.91 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=21.7
Q ss_pred hcCCcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 033718 16 QHSKPSTRRWHFVGTLISIFFLLLSVFFSWCFLVFVPIFGYGFA 59 (112)
Q Consensus 16 eH~~~~~R~lH~iGt~l~~~~l~~~~~~~~~~l~~~~v~GYg~A 59 (112)
.|+....|++| ||..-++++..... |.+-...+.||+-|
T Consensus 15 ~~~~~~~~~~~--~TI~~Vi~L~~~~L---~~AG~~~~GGYA~Q 53 (139)
T PRK09697 15 GHPGIFSRQKH--STIIYVICLLLICL---WFAGMVLVGGYARQ 53 (139)
T ss_pred cCcchhhhhhc--cchHHHHHHHHHHH---HHhcceeechhHHH
Confidence 47888899998 55555554432111 11222336677777
No 25
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=24.16 E-value=1.1e+02 Score=21.19 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=25.6
Q ss_pred CcchhhHHhHhHHHHHHHHHHHH----H--HHHHHHHHHHHhhhhhhhhhhheeecC
Q 033718 19 KPSTRRWHFVGTLISIFFLLLSV----F--FSWCFLVFVPIFGYGFAWYSHFFVEGN 69 (112)
Q Consensus 19 ~~~~R~lH~iGt~l~~~~l~~~~----~--~~~~~l~~~~v~GYg~AW~GHf~fEkN 69 (112)
-+.--.+||+-+.+.++.+.... . .........+++-|.+-|+.=...+|+
T Consensus 71 ~~~~~iiHf~~~~~~~~~~~~~~gW~~~~~~~~~~~~~~fi~IYliIw~~~y~~~k~ 127 (136)
T PF11457_consen 71 LLKQTIIHFIITYAIFLILAYLLGWFPLSVISLLIFILIFIIIYLIIWLIFYLYWKK 127 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567766555554443221 1 122333455567777777765555444
No 26
>KOG1183 consensus N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=2.2e+02 Score=26.31 Aligned_cols=46 Identities=30% Similarity=0.535 Sum_probs=28.9
Q ss_pred HHhHhHHHHHHHHHHH--------HHHHHHHHHH--HHHhhhhhhhhhhheeecCCCCCccchhHHhh
Q 033718 25 WHFVGTLISIFFLLLS--------VFFSWCFLVF--VPIFGYGFAWYSHFFVEGNVPATFGHPFWSVL 82 (112)
Q Consensus 25 lH~iGt~l~~~~l~~~--------~~~~~~~l~~--~~v~GYg~AW~GHf~fEkNrPAtF~~P~~Sl~ 82 (112)
=|++||.+..++++.. ..+--+.++. -.++-...+|+-|| |++++|
T Consensus 464 Ql~lGTlLFtiLlFlLPTi~vfY~~FtllR~~v~ai~~l~e~~ia~inhf------------PLfalm 519 (623)
T KOG1183|consen 464 QLFLGTLLFTILLFLLPTIFVFYVVFTLLRLLVSAIQTLIEFFIALINHF------------PLFALM 519 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------hHHHHH
Confidence 4799999887765422 1111233332 23666788999999 888775
No 27
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=23.97 E-value=1.9e+02 Score=21.71 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=25.9
Q ss_pred hhHHhHhHHHHHHH--H-----HHHHHHHHHHHHHHHHhhhhhhhhhhheeecCCC
Q 033718 23 RRWHFVGTLISIFF--L-----LLSVFFSWCFLVFVPIFGYGFAWYSHFFVEGNVP 71 (112)
Q Consensus 23 R~lH~iGt~l~~~~--l-----~~~~~~~~~~l~~~~v~GYg~AW~GHf~fEkNrP 71 (112)
...|++=|.+-.+= + +++.+.|.++. .+.++| +.+|||+|=-++.
T Consensus 92 ~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~-Lavv~G---a~~G~flF~~~~~ 143 (155)
T KOG3386|consen 92 SASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLF-LAVVLG---AGVGYFLFGSLTF 143 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHH---Hhhhhheeeeccc
Confidence 66788777665551 1 12234465443 444566 6789998765543
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.67 E-value=1.3e+02 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.621 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCcchhhHHhHhHHHHHHHHHHHH
Q 033718 6 LDEFWAFYVNQHSKPSTRRWHFVGTLISIFFLLLSV 41 (112)
Q Consensus 6 f~eF~p~YL~eH~~~~~R~lH~iGt~l~~~~l~~~~ 41 (112)
|+=+||++|---+--.. +++=|..+.++++.+++
T Consensus 51 ~e~~~p~wl~~~~~~~~--~~~~~~~~~~~~~~~~~ 84 (697)
T PF09726_consen 51 FEYLWPFWLLLRSVYDS--FKYQGLAFSVFFVCIAF 84 (697)
T ss_pred HHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHH
Confidence 67789999865433332 33336655555444443
No 29
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=23.45 E-value=1.9e+02 Score=17.85 Aligned_cols=8 Identities=0% Similarity=-0.380 Sum_probs=4.8
Q ss_pred hhhhhhhh
Q 033718 57 GFAWYSHF 64 (112)
Q Consensus 57 g~AW~GHf 64 (112)
.-+.+||.
T Consensus 45 ~~g~~g~C 52 (66)
T PF11127_consen 45 VTGITGFC 52 (66)
T ss_pred HHHHHCcC
Confidence 44566666
No 30
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=22.69 E-value=67 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=16.0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhee
Q 033718 25 WHFVGTLISIFFLLLSVFFSWCFLVFVPIFGYGFAWYSHFFV 66 (112)
Q Consensus 25 lH~iGt~l~~~~l~~~~~~~~~~l~~~~v~GYg~AW~GHf~f 66 (112)
+|.+-..++.++-+++-+-|.++. .+.++|. .+||++|
T Consensus 107 l~~~~~~l~Y~LMLvvMTyN~~l~-~aVv~G~---~~G~~~F 144 (144)
T PF04145_consen 107 LHFVQVLLGYLLMLVVMTYNVYLF-IAVVLGA---GLGYFLF 144 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SS-SHHHHHH---TTSS-GG
T ss_pred HHHHHHHHHHHHHHhhhheeHHHH-HHHHHHH---HHheeeC
Confidence 344444444443334445565443 4445563 3566643
No 31
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=22.36 E-value=1.6e+02 Score=19.48 Aligned_cols=29 Identities=10% Similarity=0.433 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCcchhhHHhHhHHHHHHHHHHHH
Q 033718 7 DEFWAFYVNQHSKPSTRRWHFVGTLISIFFLLLSV 41 (112)
Q Consensus 7 ~eF~p~YL~eH~~~~~R~lH~iGt~l~~~~l~~~~ 41 (112)
.|||||+---|. +--+|..+.+.++.+++
T Consensus 12 skFW~YFtLi~M------~lti~~~~Iv~si~~AI 40 (64)
T PF03579_consen 12 SKFWTYFTLIFM------MLTIGFFFIVTSIMAAI 40 (64)
T ss_pred cccchHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 489999865542 22345555555555444
No 32
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=84 Score=23.01 Aligned_cols=15 Identities=47% Similarity=0.922 Sum_probs=11.0
Q ss_pred hhhhhhhhheeecCCC
Q 033718 56 YGFAWYSHFFVEGNVP 71 (112)
Q Consensus 56 Yg~AW~GHf~fEkNrP 71 (112)
--|||.||- =+.|+|
T Consensus 22 MTFAWYghL-k~~~~p 36 (116)
T COG3169 22 MTFAWYGHL-KFTNKP 36 (116)
T ss_pred HHHHHHHHH-hccCCc
Confidence 467888888 566677
No 33
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.06 E-value=2.2e+02 Score=17.64 Aligned_cols=40 Identities=28% Similarity=0.571 Sum_probs=20.7
Q ss_pred HHHhcCCcchhhHHhHhHHHHHHHHHHHHHHH-HHHHH--HHHHhhhhh
Q 033718 13 YVNQHSKPSTRRWHFVGTLISIFFLLLSVFFS-WCFLV--FVPIFGYGF 58 (112)
Q Consensus 13 YL~eH~~~~~R~lH~iGt~l~~~~l~~~~~~~-~~~l~--~~~v~GYg~ 58 (112)
+.++|+.|. +|..++++..+..++.. |+.++ ...++||..
T Consensus 3 ~~~~~~~~i------iG~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~i 45 (51)
T PF10031_consen 3 FWKNHRGKI------IGGLIGLILALLILTFGFWKTLFILLFAAIGYYI 45 (51)
T ss_pred HHHHCcchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346676663 57777666544444333 43333 333556543
No 34
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.50 E-value=5.3e+02 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q 033718 45 WCFLVFVPIFGYGFAWYSHF 64 (112)
Q Consensus 45 ~~~l~~~~v~GYg~AW~GHf 64 (112)
+--++...++|+...|+-+=
T Consensus 189 ~~~l~~G~v~~~~v~~~~~~ 208 (357)
T PRK12652 189 WFDLLTGAVTALIVAVLLAH 208 (357)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45566677777777777654
Done!