Query 033718
Match_columns 112
No_of_seqs 104 out of 229
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4l_A ION transport protein; 13.9 95 0.0032 20.4 2.0 42 50-95 12-53 (112)
2 2ls4_A High affinity copper up 17.8 40 0.0014 17.8 0.0 12 59-70 13-24 (26)
3 4dxw_A Navrh, ION transport pr 12.4 3.8E+02 0.013 18.7 7.0 45 47-95 136-180 (229)
4 2knc_B Integrin beta-3; transm 12.3 3E+02 0.01 17.4 4.1 10 29-38 16-25 (79)
5 3mko_A Glycoprotein C; trimeri 9.9 95 0.0033 22.3 1.0 9 2-10 67-75 (137)
6 3lqv_P Splicing factor 3B subu 9.7 78 0.0027 18.3 0.4 11 62-72 13-23 (39)
7 1pp9_C Cytochrome B; cytochrom 6.6 8.9E+02 0.03 19.6 5.6 17 22-38 79-95 (379)
8 3c65_A Uvrabc system protein C 6.5 1.7E+02 0.0057 22.2 1.1 26 83-108 59-84 (226)
9 2wjn_L Reaction center protein 5.8 5E+02 0.017 20.6 3.5 28 9-38 216-243 (274)
10 1v54_M VIIIB, IX, cytochrome C 5.7 5.2E+02 0.018 15.1 3.4 20 17-36 2-21 (46)
No 1
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.87 E-value=95 Score=20.43 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=28.1
Q ss_pred HHHHhhhhhhhhhhheeecCCCCCccchhHHhhhhHHHHHHHHcCC
Q 033718 50 FVPIFGYGFAWYSHFFVEGNVPATFGHPFWSVLCDFKMFGLMLTGK 95 (112)
Q Consensus 50 ~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~Sl~~D~~M~~~~L~G~ 95 (112)
.+.+.=|.+|-+|--+|.++.|.-|++-..|++ .+++++||.
T Consensus 12 ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~l----tLF~i~T~e 53 (112)
T 4f4l_A 12 LLTVVFYIAAVMATNLYGATFPEWFGDLSKSLY----TLFQVMTLE 53 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHH----HHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCccccccCHHHHHH----HHHHHHHcc
Confidence 344455667777777787888877776555554 456677775
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=17.84 E-value=40 Score=17.81 Aligned_cols=12 Identities=17% Similarity=-0.023 Sum_probs=7.9
Q ss_pred hhhhhheeecCC
Q 033718 59 AWYSHFFVEGNV 70 (112)
Q Consensus 59 AW~GHf~fEkNr 70 (112)
|-+|||+|..+|
T Consensus 13 a~~Gyf~F~~~~ 24 (26)
T 2ls4_A 13 AGTGYFLFSWKK 24 (26)
Confidence 457888776554
No 3
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=12.39 E-value=3.8e+02 Score=18.74 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhhhhhhhheeecCCCCCccchhHHhhhhHHHHHHHHcCC
Q 033718 47 FLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWSVLCDFKMFGLMLTGK 95 (112)
Q Consensus 47 ~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~Sl~~D~~M~~~~L~G~ 95 (112)
.++.+.+.=|.+|-+|-..|++++|..|+.=..|+ -..++++||.
T Consensus 136 ~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~----~~lf~~~t~~ 180 (229)
T 4dxw_A 136 VSLLLFIILYIYATMGAILFGNDDPSRWGDLGISL----ITLFQVLTLS 180 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHH----HHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHH----HHHHHHHccC
Confidence 34555667778899999999999998887644444 4556677776
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.26 E-value=3e+02 Score=17.42 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q 033718 29 GTLISIFFLL 38 (112)
Q Consensus 29 Gt~l~~~~l~ 38 (112)
|+..+++++.
T Consensus 16 gvi~gilliG 25 (79)
T 2knc_B 16 SVMGAILLIG 25 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 5
>3mko_A Glycoprotein C; trimeric coiled-coil, viral protein; 1.80A {Lymphocytic choriomeningitis virus}
Probab=9.94 E-value=95 Score=22.33 Aligned_cols=9 Identities=22% Similarity=0.955 Sum_probs=4.6
Q ss_pred CCCcHHHHH
Q 033718 2 NFRSLDEFW 10 (112)
Q Consensus 2 ~~~sf~eF~ 10 (112)
.|.++..||
T Consensus 67 PYCNYtKFW 75 (137)
T 3mko_A 67 PYCNYSKFW 75 (137)
T ss_dssp CBCCCCHHH
T ss_pred CCcCccceE
Confidence 345555555
No 6
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=9.70 E-value=78 Score=18.33 Aligned_cols=11 Identities=27% Similarity=0.178 Sum_probs=6.9
Q ss_pred hhheeecCCCC
Q 033718 62 SHFFVEGNVPA 72 (112)
Q Consensus 62 GHf~fEkNrPA 72 (112)
+.-.=|+|||-
T Consensus 13 ~~ei~~RNrpl 23 (39)
T 3lqv_P 13 EREIDERNRPL 23 (39)
T ss_dssp HHHHHHTTCCC
T ss_pred hccchhhcCCC
Confidence 33434799994
No 7
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=6.56 E-value=8.9e+02 Score=19.58 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.6
Q ss_pred hhhHHhHhHHHHHHHHH
Q 033718 22 TRRWHFVGTLISIFFLL 38 (112)
Q Consensus 22 ~R~lH~iGt~l~~~~l~ 38 (112)
-|.+|.-|.++.++++.
T Consensus 79 iR~~H~~gAs~ffi~~y 95 (379)
T 1pp9_C 79 IRYMHANGASMFFICLY 95 (379)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38899999988887765
No 8
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=6.53 E-value=1.7e+02 Score=22.22 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=19.1
Q ss_pred hhHHHHHHHHcCCCcHHHHhhCCCCC
Q 033718 83 CDFKMFGLMLTGKMDREIKRLGKRPV 108 (112)
Q Consensus 83 ~D~~M~~~~L~G~~~~~~~~~~~~~~ 108 (112)
.|+.|+.++|+.|.+.-+++....|+
T Consensus 59 DDya~m~Evl~RR~~r~~~e~~~~PD 84 (226)
T 3c65_A 59 NDYETMREVVRRRYTRVLKEGLPLPD 84 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred cHHHHHHHHHHHHHhhhhcccCCCCC
Confidence 69999999999998765554323443
No 9
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=5.76 E-value=5e+02 Score=20.55 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCcchhhHHhHhHHHHHHHHH
Q 033718 9 FWAFYVNQHSKPSTRRWHFVGTLISIFFLL 38 (112)
Q Consensus 9 F~p~YL~eH~~~~~R~lH~iGt~l~~~~l~ 38 (112)
||..- -+- +..||.+|+.|..+++.+..
T Consensus 216 f~r~~-~gy-s~~~~~iHr~~~~~av~~~~ 243 (274)
T 2wjn_L 216 YFRDV-VGY-SIGALSIHRLGLFLASNIFL 243 (274)
T ss_dssp HHHHH-HSC-CCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHH-hhh-cccchHHHHHHHHHHHHHHH
Confidence 55433 343 55779999999988887655
No 10
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=5.68 E-value=5.2e+02 Score=15.08 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=8.5
Q ss_pred cCCcchhhHHhHhHHHHHHH
Q 033718 17 HSKPSTRRWHFVGTLISIFF 36 (112)
Q Consensus 17 H~~~~~R~lH~iGt~l~~~~ 36 (112)
|+.|-.+.+=-.-...++.+
T Consensus 2 ~S~Pp~~~~s~~E~aigl~v 21 (46)
T 1v54_M 2 TAKPAKTPTSPKEQAIGLSV 21 (46)
T ss_dssp CBCCCSSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 45555444433333333333
Done!