Query 033718
Match_columns 112
No_of_seqs 104 out of 229
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 08:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x62a1 g.39.1.3 (A:43-73) PDZ 34.9 4 0.00029 21.5 0.1 9 61-69 12-20 (31)
2 d1x64a2 g.39.1.3 (A:53-83) PDZ 33.2 3.8 0.00028 21.5 -0.2 9 61-69 12-20 (31)
3 d2ftra1 d.58.4.15 (A:4-106) Hy 17.0 30 0.0022 20.7 1.7 20 4-23 15-34 (103)
4 d1q90b_ f.21.1.2 (B:) Cytochro 12.7 2E+02 0.014 19.7 5.6 18 21-38 78-95 (212)
5 d3cx5c2 f.21.1.2 (C:1-261) Mit 11.8 2.1E+02 0.015 20.2 5.6 18 21-38 77-94 (261)
6 d1rh5c_ f.23.29.1 (C:) Sec-bet 10.1 1.2E+02 0.0086 15.2 3.3 22 18-39 4-25 (32)
7 d2hkva1 a.213.1.2 (A:1-147) Hy 8.4 39 0.0029 20.5 0.2 20 93-112 128-147 (147)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.8 2.2E+02 0.016 19.9 3.8 52 44-97 27-78 (248)
9 d2iy1a1 d.3.1.7 (A:419-643) Se 6.7 3.1E+02 0.022 17.3 4.6 26 68-96 198-225 (225)
10 d1fs1b1 a.157.1.1 (B:86-140) C 6.1 1.7E+02 0.012 15.9 2.3 17 86-102 36-52 (55)
No 1
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.88 E-value=4 Score=21.49 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=7.0
Q ss_pred hhhheeecC
Q 033718 61 YSHFFVEGN 69 (112)
Q Consensus 61 ~GHf~fEkN 69 (112)
=||||+|.+
T Consensus 12 rG~Ffve~~ 20 (31)
T d1x62a1 12 KGHFFVEDQ 20 (31)
T ss_dssp HCCEESSSC
T ss_pred cceEEeccE
Confidence 389999875
No 2
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.23 E-value=3.8 Score=21.54 Aligned_cols=9 Identities=56% Similarity=0.910 Sum_probs=6.9
Q ss_pred hhhheeecC
Q 033718 61 YSHFFVEGN 69 (112)
Q Consensus 61 ~GHf~fEkN 69 (112)
=||||+|.+
T Consensus 12 rG~Ffv~~~ 20 (31)
T d1x64a2 12 KGYFFVEGE 20 (31)
T ss_dssp SCCEEETTE
T ss_pred cceEEeccE
Confidence 389999864
No 3
>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}
Probab=17.01 E-value=30 Score=20.73 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.0
Q ss_pred CcHHHHHHHHHHhcCCcchh
Q 033718 4 RSLDEFWAFYVNQHSKPSTR 23 (112)
Q Consensus 4 ~sf~eF~p~YL~eH~~~~~R 23 (112)
.+-++|-.||+..|.--..|
T Consensus 15 ~d~e~F~~yy~~~H~pl~~~ 34 (103)
T d2ftra1 15 EDKQAFDEHYFNTHAPLTRK 34 (103)
T ss_dssp SCHHHHHHHHHHTHHHHHTT
T ss_pred CCHHHHHHHHHHhhHHHHHh
Confidence 35689999999999844433
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.73 E-value=2e+02 Score=19.75 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=14.6
Q ss_pred chhhHHhHhHHHHHHHHH
Q 033718 21 STRRWHFVGTLISIFFLL 38 (112)
Q Consensus 21 ~~R~lH~iGt~l~~~~l~ 38 (112)
.-|.+|..|..+.++++.
T Consensus 78 liR~lH~~gAs~~~~~~~ 95 (212)
T d1q90b_ 78 LIRSIHRWSASMMVLMMV 95 (212)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchHHHHHHH
Confidence 468999999988888665
No 5
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.85 E-value=2.1e+02 Score=20.20 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.6
Q ss_pred chhhHHhHhHHHHHHHHH
Q 033718 21 STRRWHFVGTLISIFFLL 38 (112)
Q Consensus 21 ~~R~lH~iGt~l~~~~l~ 38 (112)
.-|.+|..|..+.++++.
T Consensus 77 ~iR~~H~~ga~~~~~~~~ 94 (261)
T d3cx5c2 77 ILRYLHANGASFFFMVMF 94 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHH
Confidence 468999999988888655
No 6
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.14 E-value=1.2e+02 Score=15.23 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=16.1
Q ss_pred CCcchhhHHhHhHHHHHHHHHH
Q 033718 18 SKPSTRRWHFVGTLISIFFLLL 39 (112)
Q Consensus 18 ~~~~~R~lH~iGt~l~~~~l~~ 39 (112)
|+.+-+.-|.+|.+.+...+-.
T Consensus 4 skirvkpehvigvtvafviiea 25 (32)
T d1rh5c_ 4 SKIRVKPEHVIGVTVAFVIIEA 25 (32)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHH
T ss_pred cceeeccceEEEEEEehhhHHH
Confidence 5566677899999887765543
No 7
>d2hkva1 a.213.1.2 (A:1-147) Hypothetical protein ExigDRAFT_2445 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=8.37 E-value=39 Score=20.54 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=15.8
Q ss_pred cCCCcHHHHhhCCCCCccCC
Q 033718 93 TGKMDREIKRLGKRPVLQVF 112 (112)
Q Consensus 93 ~G~~~~~~~~~~~~~~~~~~ 112 (112)
+||+..-++..|+.|.++.|
T Consensus 128 rGQi~~~LR~lG~~p~~~l~ 147 (147)
T d2hkva1 128 RSQLLDYLNLLGYDIKLDLF 147 (147)
T ss_dssp HHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 57788888888988877655
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.78 E-value=2.2e+02 Score=19.88 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhheeecCCCCCccchhHHhhhhHHHHHHHHcCCCc
Q 033718 44 SWCFLVFVPIFGYGFAWYSHFFVEGNVPATFGHPFWSVLCDFKMFGLMLTGKMD 97 (112)
Q Consensus 44 ~~~~l~~~~v~GYg~AW~GHf~fEkNrPAtF~~P~~Sl~~D~~M~~~~L~G~~~ 97 (112)
.|.+++.+.++.-..-|+ ++=.|..|.=|-+|=--+|.-|..+=-+.|+.+.
T Consensus 27 ~~~~a~~~~~~~~~~~~v--y~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~ia 78 (248)
T d2r6gf1 27 EYLFAITTLILSSAGLYI--FANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIA 78 (248)
T ss_dssp CHHHHHHHHHHHHHHHHH--HSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHheEEE--EEccCccceehhhhHHHHHHHHHHHhheeEEEEE
Confidence 377776666666666676 6678888988899999999988888777776643
No 9
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.72 E-value=3.1e+02 Score=17.31 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=15.9
Q ss_pred cCCCCCccchhHHhhhhH--HHHHHHHcCCC
Q 033718 68 GNVPATFGHPFWSVLCDF--KMFGLMLTGKM 96 (112)
Q Consensus 68 kNrPAtF~~P~~Sl~~D~--~M~~~~L~G~~ 96 (112)
+|.|..|+.. =+..+ +|..++++|++
T Consensus 198 ~~~~~~~~q~---~~~~~R~~~~~~l~~~~l 225 (225)
T d2iy1a1 198 KDRPINFTQQ---HMPYFRKRMVWEILHRKL 225 (225)
T ss_dssp TTCCCCCCGG---GHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcCHH---HHHHHHHHHHHHHHhCcC
Confidence 4567777652 23333 56678888875
No 10
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.05 E-value=1.7e+02 Score=15.90 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=12.4
Q ss_pred HHHHHHHcCCCcHHHHh
Q 033718 86 KMFGLMLTGKMDREIKR 102 (112)
Q Consensus 86 ~M~~~~L~G~~~~~~~~ 102 (112)
+...+++.||-..|+|+
T Consensus 36 ~~vA~~ikgKt~eeiR~ 52 (55)
T d1fs1b1 36 KTVANMIKGKTPEEIRK 52 (55)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 45678888887777765
Done!