BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033719
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YSH|C Chain C, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 104
Score = 178 bits (452), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 96/102 (94%)
Query: 6 KTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAM 65
K KK+ E+INN+L LVMKSGKYTLGYKTVL++LRSSKGKLI+L+NNCPPLRKSEIEYYAM
Sbjct: 1 KAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSKGKLIILANNCPPLRKSEIEYYAM 60
Query: 66 LAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 107
LAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPGDSDII +
Sbjct: 61 LAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 102
>pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 115
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60
MV +KKTKK+ ESIN+RL LVMKSGKY LGYK L+ +R K KL++L+NNCP LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111
EYYAMLAK GVHHY+GNN++LGTACGKY+RV L+IIDPGDSDII+S+P +
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>pdb|3VI6|A Chain A, Crystal Structure Of Human L30e
Length = 125
Score = 175 bits (444), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60
MV +KKTKK+ ESIN+RL LVMKSGKY LGYK L+ +R K KL++L+NNCP LRKSEI
Sbjct: 2 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 61
Query: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111
EYYAMLAK GVHHY+GNN++LGTACGKY+RV L+IIDPGDSDII+S+P +
Sbjct: 62 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 112
>pdb|3IZR|FF Chain f, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 112
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 91/100 (91%)
Query: 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60
M +KK KK+ E+INN+L LVMKSGKYTLGYKTVL++LRSS GKLI+L+NNCPPLRKSEI
Sbjct: 1 MAPTKKAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEI 60
Query: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 100
E YAMLAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPG
Sbjct: 61 ETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 100
>pdb|4A18|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|6 Chain 6, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 104
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 83/100 (83%)
Query: 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
K T ++I ++LALVM+SGK TLGYK+ ++++R+ KL+ +SNNCP +RKSEIEYYA LA
Sbjct: 4 KVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLA 63
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 107
++ +HH+ G+NV+LGTACGKY R S ++I+D GDSDI+K+
Sbjct: 64 QISIHHFVGSNVELGTACGKYHRCSTMAILDAGDSDILKT 103
>pdb|1T0K|B Chain B, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
pdb|3IZS|FF Chain f, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|Z Chain Z, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|Z Chain Z, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|CC Chain c, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 105
Score = 131 bits (330), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 80/101 (79%)
Query: 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAK 68
K+ ESIN +LALV+KSGKYTLGYK+ ++SLR K KLI+++ N P LRKSE+EYYAML+K
Sbjct: 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSK 64
Query: 69 VGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 109
V+++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 65 TKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA 105
>pdb|1CK2|A Chain A, Yeast (Saccharomyces Cerevisiae) Ribosomal Protein L30
pdb|1CN7|A Chain A, Yeast Ribosomal Protein L30
pdb|1NMU|B Chain B, Mbp-L30
pdb|1NMU|D Chain D, Mbp-L30
Length = 104
Score = 131 bits (330), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 80/101 (79%)
Query: 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAK 68
K+ ESIN +LALV+KSGKYTLGYK+ ++SLR K KLI+++ N P LRKSE+EYYAML+K
Sbjct: 4 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSK 63
Query: 69 VGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 109
V+++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 64 TKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA 104
>pdb|3ZF7|GG Chain g, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 105
Score = 131 bits (330), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 78/101 (77%)
Query: 4 SKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYY 63
+KK K ++IN ++ LVMKSGKY LG + L++LR + KL+++S NCPP+RK+EIEYY
Sbjct: 2 AKKVKSKVDTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYY 61
Query: 64 AMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 104
L+K +HHY+GNN+DLGTACG++FR LSI D GDSDI
Sbjct: 62 CTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDI 102
>pdb|3JYW|2 Chain 2, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 98
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 78/98 (79%)
Query: 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGV 71
ESIN +LALV+KSGKYTLGYK+ ++SLR K KLI+++ N P LRKSE+EYYAML+K V
Sbjct: 1 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKV 60
Query: 72 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 109
+++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 61 YYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA 98
>pdb|2BO1|A Chain A, Crystal Structure Of A Hybrid Ribosomal Protein L30e With
Surface Residues From T. Celer, And Core Residues From
Yeast
Length = 101
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 14 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73
I L V+ SGKYTLGY+ ++SL+ KLI+++ N P RK ++EYYA L+ V+
Sbjct: 4 IAFELRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYARLSGTPVYE 63
Query: 74 YNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 105
+ G NV+LGTA GK VS +SI+D G+S I+
Sbjct: 64 FEGTNVELGTAVGKPHTVSVVSILDAGESRIL 95
>pdb|3J21|Z Chain Z, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 99
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 22 MKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL 81
M++GK LG +R ++ KLI+++ N P K +I YYA L+ + V+ + G +V+L
Sbjct: 11 METGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVEL 70
Query: 82 GTACGKYFRVSCLSIIDPGDSDII 105
GT GK F V+ L+I+DPG+S I+
Sbjct: 71 GTLLGKPFVVASLAIVDPGESKIL 94
>pdb|3N4Z|A Chain A, Crystal Structure Of Quintuple Arg-To-Lys Variant Of T.
Celer L30e
pdb|3N4Z|B Chain B, Crystal Structure Of Quintuple Arg-To-Lys Variant Of T.
Celer L30e
Length = 101
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G K ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGAKKSIQYAKMGGAKLIIVARNAKPDIKEDIEYYAKLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
GK VS L+++DPG+S I+
Sbjct: 74 LLGKPHTVSALAVVDPGESRIL 95
>pdb|1W3E|X Chain X, Ribosomal L30e Of Thermococcus Celer, P59a Mutant
Length = 101
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIAVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|1W42|A Chain A, T. Celer L30e R92a Variant
Length = 101
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESAIL 95
>pdb|3RA5|A Chain A, Crystal Structure Of T. Celer L30e E6aR92A VARIANT
pdb|3RA5|B Chain B, Crystal Structure Of T. Celer L30e E6aR92A VARIANT
Length = 101
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESAIL 95
>pdb|1W40|A Chain A, T. Celer L30e K9a Variant
Length = 101
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|3N4Y|A Chain A, Crystal Structure Of Wild-Type T. Celer L30e In Low Ionic
Strength Condition Without Precipitant
Length = 101
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|1H7M|A Chain A, Ribosomal Protein L30e From Thermococcus Celer
pdb|1GO0|A Chain A, Nmr Structure Of Ribosomal Protein L30e From Thermococcus
Celer
pdb|1GO1|A Chain A, Nmr Structure Of Ribosomal Protein L30e From Thermococcus
Celer
Length = 102
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 15 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 74
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 75 LLGRPHTVSALAVVDPGESRIL 96
>pdb|3CPQ|A Chain A, Crystal Structure Of L30e A Ribosomal Protein From
Methanocaldococcus Jannaschii Dsm2661 (Mj1044)
pdb|3CPQ|B Chain B, Crystal Structure Of L30e A Ribosomal Protein From
Methanocaldococcus Jannaschii Dsm2661 (Mj1044)
Length = 110
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 61/99 (61%)
Query: 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
++ + +N + + +GK LG K ++ ++ +GKL++L+ N P + +++YYA L+
Sbjct: 3 RRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLS 62
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 106
+ V+ + +++LG CGK F V+ L ++D G S+I++
Sbjct: 63 NIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIME 101
>pdb|3LFO|A Chain A, Crystal Structure Of T. Celer L30e E90aR92A VARIANT
Length = 101
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG S I+
Sbjct: 74 LLGRPHTVSALAVVDPGASAIL 95
>pdb|1W41|A Chain A, T.Celer L30e E90a Variant
Length = 101
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG S I+
Sbjct: 74 LLGRPHTVSALAVVDPGASRIL 95
>pdb|3RA6|A Chain A, Crystal Structure Of T. Celer L30e E62aK46A VARIANT
Length = 101
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 24 SGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 83
+GK +G + ++ + KLI+++ N P +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIAEDIEYYARLSGIPVYAFEGTSVELGT 73
Query: 84 ACGKYFRVSCLSIIDPGDSDII 105
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|1RA4|A Chain A, Crystal Structure Of The Methanococcus Jannaschii L7ae
Protein
pdb|1XBI|A Chain A, High Resolution Structure Of Methanocaldococcus Jannaschii
L7ae
Length = 120
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%)
Query: 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60
M K K E L V K+ K G V +++ KL++++ + P
Sbjct: 4 MAVYVKFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAH 63
Query: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
Y K + Y + DLG A G S ++II+ GD++ +K L
Sbjct: 64 LPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVL 111
>pdb|1SDS|A Chain A, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|B Chain B, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|C Chain C, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
Length = 117
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%)
Query: 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 60
M K K E L V K+ K G V +++ KL++++ + P
Sbjct: 1 MAVYVKFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAH 60
Query: 61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
Y K + Y + DLG A G S ++II+ GD++ +K L
Sbjct: 61 LPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVL 108
>pdb|3PAF|A Chain A, M. Jannaschii L7ae Mutant
pdb|3PAF|B Chain B, M. Jannaschii L7ae Mutant
Length = 117
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 9 KTHESINNRLA-LVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA 67
K E I L V K+ + G V +++ KL++++ + P Y
Sbjct: 8 KVPEEIQKELLDAVAKAQQIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEE 67
Query: 68 KVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108
K + Y + DLG A G S ++II+ GD++ +K L
Sbjct: 68 KGIPYAYVASKQDLGKAAGVSRPASSVAIINEGDAEELKVL 108
>pdb|3ID5|C Chain C, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|G Chain G, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|C Chain C, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|D Chain D, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|L Chain L, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 130
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 23 KSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAML---AKVGVHHYNGNNV 79
+SGK G +++ + KL++++ + P EI + L K + Y +
Sbjct: 31 ESGKIKKGTNETTKAVERGQAKLVIIAEDVQP---EEIVAHLPLLCDEKKIPYVYVSSKK 87
Query: 80 DLGTACGKYFRVSCLSIIDPGDS 102
LG ACG + +I++PG++
Sbjct: 88 ALGEACGLQVATASAAILEPGEA 110
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 41 SKGKLILLSNNCPPLRKSE 59
SKG L +SN PP+RKSE
Sbjct: 333 SKGGLWFMSNGFPPIRKSE 351
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 41 SKGKLILLSNNCPPLRKSE 59
SKG L SN PP+RKSE
Sbjct: 333 SKGGLWFXSNGFPPIRKSE 351
>pdb|3QK3|A Chain A, Crystal Structure Of Human Beta-Crystallin B3
pdb|3QK3|B Chain B, Crystal Structure Of Human Beta-Crystallin B3
pdb|3QK3|C Chain C, Crystal Structure Of Human Beta-Crystallin B3
Length = 184
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVG 70
YK +L L + +GK LS CP L S +L KVG
Sbjct: 9 YKVILYELENFQGKRCELSAECPSLTDS------LLEKVG 42
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 54 PLRKSEIEYYAMLAKVGVHHYNGNNVDLGT---ACGKYFR 90
P + E++ + V +HH +G NVDLG GK +R
Sbjct: 13 PFQTPELKAFLERYNVTLHHQSGVNVDLGQDKEVDGKLYR 52
>pdb|4B4P|A Chain A, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf.
pdb|4B4P|B Chain B, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf.
pdb|4B4Q|A Chain A, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group A Type 1
Hexasaccharide
pdb|4B4Q|B Chain B, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group A Type 1
Hexasaccharide
pdb|4B4R|A Chain A, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group B Type 1
Hexasaccharide
pdb|4B4R|B Chain B, Crystal Structure Of The Lectin Domain Of F18 Fimbrial
Adhesin Fedf In Complex With Blood Group B Type 1
Hexasaccharide
Length = 151
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 38 LRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNG----------NNVDLGTACG 86
+ SS G L + + YA+ +V +HH +G + V GTACG
Sbjct: 40 IPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACG 98
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 276
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 30 GYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYN--GNNVDLGTACGK 87
G + V R++ +L+L++NN P+ + + L + Y + LG A G+
Sbjct: 148 GLQEVTRTIEKKTARLVLIANNVDPI--ELVLWMPTLCRANKIPYAIVKDKARLGDAIGR 205
Query: 88 YFRVSCLSIIDPGDSD 103
+C++ D D
Sbjct: 206 KT-ATCVAFTDVNAED 220
>pdb|1QZ4|A Chain A, Structure Of Ycfc Protein Of Unknown Function Escherichia
Coli
pdb|1SDI|A Chain A, 1.65 A Structure Of Escherichia Coli Ycfc Gene Product
Length = 213
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85
+YTL + R L S+KG L L N L++ ++E++ + ++ + VD+ +
Sbjct: 87 RYTLSLMVLERKLSSAKGALDTLGNRINGLQR-QLEHFDLQSETLMSAMAAIYVDVISPL 145
Query: 86 GKYFRVS 92
G +V+
Sbjct: 146 GPRIQVT 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,301,295
Number of Sequences: 62578
Number of extensions: 111227
Number of successful extensions: 727
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 54
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)