Query 033719
Match_columns 112
No_of_seqs 148 out of 1016
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_f 60S ribosomal protein L 100.0 2E-36 6.9E-41 204.2 9.0 111 1-111 1-111 (112)
2 3u5e_c L32, RP73, YL38, 60S ri 100.0 4.3E-35 1.5E-39 195.4 8.3 100 9-108 5-104 (105)
3 4a18_G RPL30; ribosome, eukary 100.0 7.3E-35 2.5E-39 193.9 8.7 98 10-107 6-103 (104)
4 3vi6_A 60S ribosomal protein L 100.0 1.8E-34 6.2E-39 197.9 6.6 111 1-111 2-112 (125)
5 3on1_A BH2414 protein; structu 100.0 1.8E-33 6.1E-38 186.1 7.4 98 11-110 3-100 (101)
6 3v7q_A Probable ribosomal prot 100.0 8.7E-33 3E-37 183.0 8.9 96 12-109 5-100 (101)
7 3j21_Z 50S ribosomal protein L 100.0 1.7E-32 5.8E-37 180.8 8.8 95 13-107 2-96 (99)
8 3cpq_A 50S ribosomal protein L 100.0 8.2E-32 2.8E-36 180.7 7.7 97 10-107 5-101 (110)
9 1w41_A 50S ribosomal protein L 100.0 1.4E-31 4.8E-36 176.8 8.5 97 12-109 2-98 (101)
10 1vq8_F 50S ribosomal protein L 100.0 5.5E-29 1.9E-33 169.1 11.2 99 8-107 11-110 (120)
11 2lbw_A H/ACA ribonucleoprotein 100.0 6.2E-29 2.1E-33 169.2 11.2 96 9-105 3-99 (121)
12 1rlg_A 50S ribosomal protein L 100.0 6E-29 2E-33 168.7 10.3 99 8-107 9-108 (119)
13 2fc3_A 50S ribosomal protein L 100.0 8.2E-29 2.8E-33 169.1 11.0 99 8-107 10-109 (124)
14 3o85_A Ribosomal protein L7AE; 100.0 2.3E-28 7.8E-33 166.8 11.2 94 8-102 13-107 (122)
15 2aif_A Ribosomal protein L7A; 100.0 7.7E-28 2.6E-32 166.7 11.5 97 9-106 24-121 (135)
16 2ale_A SNU13, NHP2/L7AE family 99.9 1.3E-27 4.6E-32 165.4 10.9 93 8-101 14-107 (134)
17 1xbi_A 50S ribosomal protein L 99.9 2.1E-27 7.2E-32 161.4 8.1 97 8-108 14-111 (120)
18 2jnb_A NHP2-like protein 1; sp 99.9 6.4E-28 2.2E-32 168.9 5.5 97 8-105 32-129 (144)
19 3v7e_A Ribosome-associated pro 99.9 1.4E-25 4.9E-30 143.3 8.4 79 18-97 3-81 (82)
20 2xzm_U Ribosomal protein L7AE 99.9 1.5E-25 5.1E-30 153.7 7.9 94 8-102 6-111 (126)
21 3u5c_M 40S ribosomal protein S 99.9 2E-24 6.7E-29 150.9 5.2 98 10-108 24-135 (143)
22 3jyw_G 60S ribosomal protein L 99.8 4.1E-21 1.4E-25 129.5 4.8 80 22-103 21-101 (113)
23 2kg4_A Growth arrest and DNA-d 99.8 3.2E-19 1.1E-23 126.9 9.2 96 6-102 15-133 (165)
24 2zkr_f 60S ribosomal protein L 99.8 2.9E-19 1E-23 135.1 8.0 78 23-102 132-210 (266)
25 3izc_H 60S ribosomal protein R 99.7 2.4E-18 8.1E-23 129.4 7.6 76 26-103 131-207 (256)
26 4a17_F RPL7A, 60S ribosomal pr 99.7 8.2E-17 2.8E-21 120.9 9.0 75 26-102 124-199 (255)
27 3iz5_H 60S ribosomal protein L 99.6 2.1E-14 7.1E-19 107.7 9.6 91 10-102 100-202 (258)
28 3cg6_A Growth arrest and DNA-d 99.4 1.2E-12 4.2E-17 91.1 10.0 94 7-101 6-114 (146)
29 3ffm_A Growth arrest and DNA-d 99.4 5.4E-12 1.9E-16 89.3 10.9 97 4-101 24-135 (167)
30 3ir9_A Peptide chain release f 96.5 0.011 3.8E-07 41.4 7.2 87 8-98 30-161 (166)
31 1gz0_A Hypothetical tRNA/RRNA 95.8 0.023 7.7E-07 42.0 6.4 72 26-99 13-86 (253)
32 1x52_A Pelota homolog, CGI-17; 95.4 0.02 6.7E-07 38.3 4.4 77 21-100 33-116 (124)
33 3nk6_A 23S rRNA methyltransfer 95.3 0.044 1.5E-06 41.1 6.5 69 27-99 36-105 (277)
34 2qi2_A Pelota, cell division p 95.2 0.031 1.1E-06 43.2 5.5 84 10-100 253-337 (347)
35 2xw6_A MGS, methylglyoxal synt 95.1 0.028 9.7E-07 38.2 4.4 57 29-85 61-122 (134)
36 3oby_A Protein pelota homolog; 95.0 0.044 1.5E-06 42.6 5.9 88 8-101 250-342 (352)
37 1b93_A Protein (methylglyoxal 94.5 0.054 1.8E-06 37.5 4.7 56 30-85 70-130 (152)
38 1vmd_A MGS, methylglyoxal synt 94.3 0.061 2.1E-06 38.3 4.7 56 30-85 86-146 (178)
39 1ipa_A RRMH, RNA 2'-O-ribose m 94.2 0.094 3.2E-06 39.2 5.8 73 24-98 26-101 (274)
40 3obw_A Protein pelota homolog; 94.1 0.066 2.3E-06 41.7 5.0 84 10-98 271-360 (364)
41 3e20_C Eukaryotic peptide chai 94.0 0.15 5E-06 40.7 6.9 88 8-99 289-422 (441)
42 3j15_A Protein pelota; ribosom 93.9 0.057 1.9E-06 41.9 4.2 84 10-98 266-353 (357)
43 3mca_B Protein DOM34, elongati 93.6 0.25 8.4E-06 38.8 7.4 87 9-100 276-369 (390)
44 3agk_A Peptide chain release f 93.3 0.16 5.6E-06 39.2 6.0 58 22-82 295-352 (373)
45 2vgn_A DOM34; translation term 93.0 0.32 1.1E-05 38.0 7.2 76 22-100 293-375 (386)
46 3agj_B Protein pelota homolog; 92.3 0.3 1E-05 37.7 6.1 87 10-101 258-351 (358)
47 2yvq_A Carbamoyl-phosphate syn 90.7 0.25 8.5E-06 33.3 3.7 42 32-73 86-130 (143)
48 1dt9_A ERF1, protein (eukaryot 90.2 0.82 2.8E-05 36.0 6.8 42 10-53 286-327 (437)
49 1x7o_A Avirb, rRNA methyltrans 89.7 1.1 3.9E-05 33.4 7.0 72 24-99 38-112 (287)
50 3tsm_A IGPS, indole-3-glycerol 88.4 3.2 0.00011 30.9 8.6 68 31-100 132-199 (272)
51 2ohw_A YUEI protein; structura 86.7 5.1 0.00017 26.8 8.0 45 32-77 53-97 (133)
52 3nkl_A UDP-D-quinovosamine 4-d 86.1 1.6 5.5E-05 28.0 5.2 53 28-81 51-104 (141)
53 4a29_A Engineered retro-aldol 85.7 2.2 7.5E-05 31.8 6.3 74 26-101 111-184 (258)
54 1i4n_A Indole-3-glycerol phosp 81.2 9.2 0.00031 28.1 8.1 72 27-101 110-182 (251)
55 3erw_A Sporulation thiol-disul 79.8 2.9 0.0001 25.9 4.4 63 36-99 61-123 (145)
56 2ggt_A SCO1 protein homolog, m 77.0 12 0.0004 23.8 8.6 48 41-88 60-110 (164)
57 1pii_A N-(5'phosphoribosyl)ant 76.8 9.1 0.00031 30.5 7.3 72 27-101 117-188 (452)
58 3qja_A IGPS, indole-3-glycerol 76.5 8.4 0.00029 28.4 6.7 69 28-98 122-190 (272)
59 2rli_A SCO2 protein homolog, m 73.5 15 0.00052 23.5 7.8 48 41-88 63-113 (171)
60 3gkn_A Bacterioferritin comigr 72.3 9.2 0.00031 24.6 5.4 52 33-88 60-111 (163)
61 3zy2_A Putative GDP-fucose pro 71.3 5.2 0.00018 31.2 4.5 53 32-85 269-321 (362)
62 2l82_A Designed protein OR32; 71.2 17 0.00057 24.2 6.4 52 32-85 16-68 (162)
63 3drn_A Peroxiredoxin, bacterio 68.8 17 0.00058 23.4 6.2 51 34-88 55-105 (161)
64 3u5r_E Uncharacterized protein 66.8 16 0.00053 25.2 5.9 67 32-99 82-152 (218)
65 2l5o_A Putative thioredoxin; s 65.6 22 0.00074 22.2 6.4 55 42-99 61-115 (153)
66 2k6v_A Putative cytochrome C o 64.3 9.8 0.00034 24.4 4.3 46 42-87 72-120 (172)
67 2wfc_A Peroxiredoxin 5, PRDX5; 62.1 20 0.00069 23.7 5.6 50 35-88 59-111 (167)
68 3kcm_A Thioredoxin family prot 61.1 25 0.00086 21.9 5.8 51 36-88 55-105 (154)
69 2f9s_A Thiol-disulfide oxidore 60.5 14 0.00049 23.1 4.5 58 38-99 55-112 (151)
70 2cvb_A Probable thiol-disulfid 59.6 22 0.00075 23.3 5.4 46 43-88 66-115 (188)
71 2iue_A Pactolus I-domain; memb 59.0 44 0.0015 23.8 7.2 72 28-105 83-202 (212)
72 3h5n_A MCCB protein; ubiquitin 58.9 10 0.00035 28.8 4.1 32 42-73 208-239 (353)
73 1xzo_A BSSCO, hypothetical pro 58.8 26 0.00088 22.4 5.6 30 42-71 69-98 (174)
74 2b5x_A YKUV protein, TRXY; thi 58.6 29 0.00098 21.2 5.7 56 43-99 62-119 (148)
75 2ywi_A Hypothetical conserved 58.5 20 0.0007 23.5 5.1 52 37-88 74-129 (196)
76 3ia1_A THIO-disulfide isomeras 58.4 31 0.0011 21.5 7.2 55 42-98 60-117 (154)
77 2a4v_A Peroxiredoxin DOT5; yea 57.5 30 0.001 22.0 5.7 51 33-88 60-110 (159)
78 2ioj_A Hypothetical protein AF 56.9 29 0.00099 22.3 5.6 58 27-86 56-116 (139)
79 3fcs_B Integrin beta-3; beta p 56.7 30 0.001 28.9 6.8 69 29-102 221-338 (690)
80 3mfq_A TROA, high-affinity zin 56.6 10 0.00035 27.8 3.6 22 51-72 195-216 (282)
81 2b7k_A SCO1 protein; metalloch 56.4 42 0.0014 22.5 6.6 48 41-88 77-127 (200)
82 3fw2_A Thiol-disulfide oxidore 56.0 34 0.0012 21.3 6.6 54 42-99 69-125 (150)
83 3keo_A Redox-sensing transcrip 55.3 17 0.0006 25.9 4.5 54 25-81 131-184 (212)
84 2i6d_A RNA methyltransferase, 54.9 3.7 0.00013 30.0 0.9 66 24-98 25-92 (257)
85 1zud_1 Adenylyltransferase THI 54.6 11 0.00038 27.1 3.4 31 42-73 118-148 (251)
86 1tp9_A Peroxiredoxin, PRX D (t 53.9 41 0.0014 21.7 7.5 53 32-88 60-115 (162)
87 3ecd_A Serine hydroxymethyltra 52.9 15 0.00051 27.0 4.0 43 31-73 161-205 (425)
88 3eyt_A Uncharacterized protein 52.5 24 0.00082 22.2 4.5 48 41-88 61-116 (158)
89 3ixr_A Bacterioferritin comigr 52.0 20 0.00067 23.8 4.2 53 32-88 75-127 (179)
90 3dzz_A Putative pyridoxal 5'-p 51.8 28 0.00095 25.2 5.3 43 31-73 149-198 (391)
91 1wn2_A Peptidyl-tRNA hydrolase 51.5 46 0.0016 21.5 6.2 70 31-108 44-114 (121)
92 2i4r_A V-type ATP synthase sub 50.6 19 0.00064 22.8 3.7 52 29-80 36-91 (102)
93 3uhf_A Glutamate racemase; str 50.3 17 0.0006 26.8 4.0 38 34-73 78-115 (274)
94 1rlk_A Hypothetical protein TA 50.1 48 0.0016 21.2 5.8 70 31-108 40-110 (117)
95 3nl6_A Thiamine biosynthetic b 50.0 38 0.0013 27.4 6.2 62 32-98 29-95 (540)
96 3gbx_A Serine hydroxymethyltra 49.9 19 0.00065 26.4 4.2 43 31-73 158-202 (420)
97 1kyq_A Met8P, siroheme biosynt 48.8 14 0.00047 27.4 3.2 62 42-107 106-179 (274)
98 2nu8_A Succinyl-COA ligase [AD 47.8 27 0.00092 25.6 4.7 27 43-71 65-91 (288)
99 3cf4_G Acetyl-COA decarboxylas 47.5 59 0.002 21.6 6.1 43 31-73 24-67 (170)
100 3o63_A Probable thiamine-phosp 47.2 35 0.0012 24.6 5.1 56 32-91 47-116 (243)
101 3fro_A GLGA glycogen synthase; 46.4 81 0.0028 22.8 7.7 62 25-88 258-331 (439)
102 1n8j_A AHPC, alkyl hydroperoxi 46.4 61 0.0021 21.4 6.3 50 33-88 55-110 (186)
103 1q7s_A BIT1, protein CGI-147; 45.8 54 0.0019 21.0 5.4 66 31-107 40-109 (117)
104 3me7_A Putative uncharacterize 45.6 24 0.00083 23.1 3.8 30 41-71 63-92 (170)
105 2lrn_A Thiol:disulfide interch 45.5 53 0.0018 20.4 6.4 44 42-88 62-108 (152)
106 3ist_A Glutamate racemase; str 45.3 37 0.0013 24.8 5.1 38 34-73 59-96 (269)
107 3p3v_A PTS system, N-acetylgal 45.3 15 0.0005 25.3 2.7 77 25-106 14-95 (163)
108 1c7n_A Cystalysin; transferase 45.2 34 0.0012 24.9 4.9 43 31-73 153-202 (399)
109 3hp4_A GDSL-esterase; psychrot 44.7 43 0.0015 21.5 4.9 43 31-73 92-142 (185)
110 2gzm_A Glutamate racemase; enz 44.5 31 0.0011 24.8 4.5 39 33-73 56-94 (267)
111 2yv1_A Succinyl-COA ligase [AD 44.4 33 0.0011 25.3 4.7 25 45-69 98-122 (294)
112 1d2f_A MALY protein; aminotran 44.2 44 0.0015 24.3 5.4 43 31-73 151-200 (390)
113 3ib7_A ICC protein; metallopho 44.1 42 0.0014 23.8 5.2 49 31-79 53-111 (330)
114 3hcz_A Possible thiol-disulfid 44.0 53 0.0018 20.0 5.4 59 35-99 57-120 (148)
115 2yv2_A Succinyl-COA synthetase 43.9 33 0.0011 25.3 4.7 26 43-70 72-97 (297)
116 1knx_A Probable HPR(Ser) kinas 43.7 26 0.00088 26.5 4.1 45 34-80 75-119 (312)
117 3av3_A Phosphoribosylglycinami 43.6 44 0.0015 23.5 5.1 40 31-73 17-58 (212)
118 1zuw_A Glutamate racemase 1; ( 43.3 29 0.001 25.1 4.2 39 33-73 56-95 (272)
119 1ytl_A Acetyl-COA decarboxylas 42.8 44 0.0015 22.9 4.9 46 25-73 19-66 (174)
120 3f7j_A YVGN protein; aldo-keto 42.7 52 0.0018 23.7 5.5 64 11-74 119-189 (276)
121 1jw9_B Molybdopterin biosynthe 42.6 20 0.00067 25.6 3.1 31 42-73 121-151 (249)
122 3uma_A Hypothetical peroxiredo 42.5 57 0.0019 22.0 5.4 48 35-88 84-136 (184)
123 4e38_A Keto-hydroxyglutarate-a 42.3 38 0.0013 24.4 4.6 59 31-97 96-154 (232)
124 3fkf_A Thiol-disulfide oxidore 42.0 57 0.0019 19.8 6.3 53 43-99 68-123 (148)
125 3mwd_B ATP-citrate synthase; A 41.8 30 0.001 26.3 4.2 43 31-73 93-136 (334)
126 3qel_B Glutamate [NMDA] recept 41.8 34 0.0012 25.4 4.5 45 31-75 52-97 (364)
127 1jdq_A TM006 protein, hypothet 41.6 38 0.0013 21.0 4.0 38 34-73 43-82 (98)
128 3c2q_A Uncharacterized conserv 41.0 39 0.0013 26.1 4.6 45 12-77 202-246 (345)
129 2oho_A Glutamate racemase; iso 40.9 38 0.0013 24.5 4.5 38 34-73 66-103 (273)
130 2d00_A V-type ATP synthase sub 40.9 60 0.002 20.5 5.0 52 28-79 28-83 (109)
131 2vvt_A Glutamate racemase; iso 40.7 39 0.0013 24.7 4.6 39 33-73 77-115 (290)
132 1jkx_A GART;, phosphoribosylgl 40.7 52 0.0018 23.1 5.1 40 31-73 14-55 (212)
133 3lor_A Thiol-disulfide isomera 40.6 41 0.0014 21.0 4.2 47 42-88 64-119 (160)
134 2c0d_A Thioredoxin peroxidase 40.4 76 0.0026 21.9 5.9 47 35-87 83-138 (221)
135 1y8q_A Ubiquitin-like 1 activa 40.2 21 0.00071 27.0 3.1 34 42-77 125-158 (346)
136 3l8a_A METC, putative aminotra 40.2 40 0.0014 25.1 4.6 44 30-73 182-232 (421)
137 1xvw_A Hypothetical protein RV 39.6 39 0.0013 21.2 4.0 44 41-88 69-114 (160)
138 1xty_A PTH, peptidyl-tRNA hydr 39.6 74 0.0025 20.4 6.2 69 32-108 44-113 (120)
139 3isl_A Purine catabolism prote 39.4 29 0.00099 25.3 3.7 43 31-73 125-171 (416)
140 3gl3_A Putative thiol:disulfid 39.3 66 0.0023 19.8 6.3 44 42-88 61-104 (152)
141 3b3e_A YVGN protein; aldo-keto 39.3 65 0.0022 23.8 5.7 64 11-74 153-223 (310)
142 1oi7_A Succinyl-COA synthetase 39.3 44 0.0015 24.5 4.7 16 55-70 75-90 (288)
143 3h7u_A Aldo-keto reductase; st 38.7 60 0.002 24.1 5.4 64 11-74 156-226 (335)
144 1ivn_A Thioesterase I; hydrola 38.7 72 0.0025 20.6 5.3 44 30-73 87-138 (190)
145 1svv_A Threonine aldolase; str 38.6 41 0.0014 23.8 4.4 45 31-77 128-185 (359)
146 2eq5_A 228AA long hypothetical 38.5 59 0.002 22.3 5.1 33 37-73 70-102 (228)
147 3dfz_A SIRC, precorrin-2 dehyd 38.4 24 0.00081 25.3 3.0 56 42-102 91-150 (223)
148 3kxe_C Antitoxin protein PARD- 38.3 17 0.00058 22.4 1.9 40 1-40 1-40 (88)
149 3h7r_A Aldo-keto reductase; st 38.2 62 0.0021 24.0 5.4 64 11-74 152-222 (331)
150 3lwa_A Secreted thiol-disulfid 38.0 77 0.0026 20.4 5.4 41 44-86 100-140 (183)
151 1uf3_A Hypothetical protein TT 37.9 56 0.0019 21.6 4.8 46 33-78 23-73 (228)
152 1tt5_A APPBP1, amyloid protein 37.9 29 0.00098 28.0 3.7 34 42-77 124-157 (531)
153 2jfq_A Glutamate racemase; cel 37.9 35 0.0012 25.0 3.9 39 33-73 75-113 (286)
154 2vi8_A Serine hydroxymethyltra 37.8 34 0.0012 24.9 3.9 46 31-77 152-199 (405)
155 3nra_A Aspartate aminotransfer 37.6 52 0.0018 23.9 4.9 42 31-73 169-217 (407)
156 2jfz_A Glutamate racemase; cel 37.5 64 0.0022 22.9 5.2 38 34-73 54-91 (255)
157 2i81_A 2-Cys peroxiredoxin; st 37.5 83 0.0029 21.4 5.7 49 34-88 78-135 (213)
158 3kgw_A Alanine-glyoxylate amin 37.3 29 0.00098 25.0 3.3 43 31-73 137-183 (393)
159 3k6s_B Integrin beta-2; cell r 37.3 51 0.0018 27.6 5.2 66 29-100 213-326 (687)
160 3b8x_A WBDK, pyridoxamine 5-ph 37.3 30 0.001 25.3 3.5 42 31-73 118-160 (390)
161 3jy6_A Transcriptional regulat 37.1 88 0.003 21.4 5.8 37 33-73 54-90 (276)
162 1pq4_A Periplasmic binding pro 36.9 57 0.0019 23.8 5.0 23 50-72 219-241 (291)
163 1jfu_A Thiol:disulfide interch 36.8 65 0.0022 20.8 4.9 51 33-87 84-137 (186)
164 3psh_A Protein HI_1472; substr 36.7 59 0.002 23.4 5.0 37 34-74 76-112 (326)
165 2dkj_A Serine hydroxymethyltra 36.6 36 0.0012 24.8 3.8 46 31-77 152-199 (407)
166 3vi3_B Integrin beta-1; beta p 36.2 98 0.0034 24.7 6.5 73 28-105 229-348 (454)
167 3up8_A Putative 2,5-diketo-D-g 36.2 1.2E+02 0.0043 22.0 6.9 64 11-74 136-206 (298)
168 4f40_A Prostaglandin F2-alpha 35.8 1.1E+02 0.0039 21.9 6.5 64 11-74 131-201 (288)
169 2h01_A 2-Cys peroxiredoxin; th 35.8 92 0.0031 20.4 5.8 49 34-88 57-114 (192)
170 3dnf_A ISPH, LYTB, 4-hydroxy-3 35.4 73 0.0025 24.0 5.4 52 42-98 209-262 (297)
171 1ax4_A Tryptophanase; tryptoph 35.4 42 0.0014 25.2 4.1 42 32-73 170-222 (467)
172 2yvt_A Hypothetical protein AQ 35.4 80 0.0027 21.5 5.4 25 31-55 21-45 (260)
173 3rjt_A Lipolytic protein G-D-S 35.3 74 0.0025 20.6 5.0 46 28-73 116-173 (216)
174 4f82_A Thioredoxin reductase; 35.3 67 0.0023 21.9 4.9 52 30-87 70-126 (176)
175 3t3p_B Integrin beta-3; integr 35.2 1.3E+02 0.0043 24.2 7.0 89 12-105 201-341 (472)
176 2nxf_A Putative dimetal phosph 35.1 74 0.0025 22.1 5.2 48 32-79 41-98 (322)
177 1mi3_A Xylose reductase, XR; a 35.0 96 0.0033 22.7 6.0 65 11-75 147-218 (322)
178 3by5_A Cobalamin biosynthesis 35.0 55 0.0019 22.2 4.3 25 58-84 54-78 (155)
179 1p9l_A Dihydrodipicolinate red 34.8 73 0.0025 22.9 5.2 30 42-73 45-74 (245)
180 3g0t_A Putative aminotransfera 34.8 70 0.0024 23.5 5.3 43 31-73 171-220 (437)
181 3zrp_A Serine-pyruvate aminotr 34.8 30 0.001 24.8 3.1 43 31-73 116-162 (384)
182 1qwk_A Aldose reductase, aldo- 34.7 1.1E+02 0.0037 22.4 6.2 64 11-74 131-201 (317)
183 4dq6_A Putative pyridoxal phos 34.7 49 0.0017 23.8 4.3 41 31-73 155-202 (391)
184 3fsl_A Aromatic-amino-acid ami 34.7 62 0.0021 23.4 4.9 44 30-73 159-211 (397)
185 2lqo_A Putative glutaredoxin R 34.5 76 0.0026 19.1 5.6 29 44-73 5-33 (92)
186 3bzy_B ESCU; auto cleavage pro 34.3 27 0.00091 21.3 2.3 26 56-85 28-53 (83)
187 2bmx_A Alkyl hydroperoxidase C 34.2 99 0.0034 20.3 6.0 48 35-88 72-125 (195)
188 3h7f_A Serine hydroxymethyltra 34.2 40 0.0014 25.5 3.8 45 31-76 174-220 (447)
189 3hl2_A O-phosphoseryl-tRNA(SEC 34.2 47 0.0016 27.0 4.3 45 29-73 200-251 (501)
190 3buv_A 3-OXO-5-beta-steroid 4- 34.1 1.1E+02 0.0038 22.4 6.2 64 11-74 147-219 (326)
191 4ds3_A Phosphoribosylglycinami 33.9 1.2E+02 0.0042 21.2 6.3 39 32-73 22-62 (209)
192 3n0l_A Serine hydroxymethyltra 33.7 42 0.0014 24.5 3.8 43 31-73 153-197 (417)
193 2yrr_A Aminotransferase, class 33.7 42 0.0015 23.6 3.7 43 31-73 113-159 (353)
194 2dwu_A Glutamate racemase; iso 33.4 49 0.0017 24.0 4.1 39 33-73 60-98 (276)
195 2e7j_A SEP-tRNA:Cys-tRNA synth 33.4 76 0.0026 22.6 5.1 43 31-73 132-182 (371)
196 2jsy_A Probable thiol peroxida 33.3 65 0.0022 20.4 4.3 45 41-89 75-121 (167)
197 2l2q_A PTS system, cellobiose- 33.3 76 0.0026 19.5 4.5 48 30-82 41-88 (109)
198 3rui_A Ubiquitin-like modifier 33.0 43 0.0015 25.6 3.8 31 42-73 139-169 (340)
199 2bgs_A Aldose reductase; holoe 33.0 1E+02 0.0035 23.0 5.9 64 11-74 168-238 (344)
200 1z7d_A Ornithine aminotransfer 33.0 80 0.0027 23.7 5.4 51 31-82 201-259 (433)
201 3kc2_A Uncharacterized protein 32.9 47 0.0016 25.1 4.0 46 25-70 28-73 (352)
202 3p9x_A Phosphoribosylglycinami 32.6 86 0.0029 22.2 5.1 39 32-73 17-57 (211)
203 2q8u_A Exonuclease, putative; 32.5 49 0.0017 24.1 4.0 21 31-51 50-70 (336)
204 1vc4_A Indole-3-glycerol phosp 32.2 66 0.0023 23.1 4.6 70 27-99 114-183 (254)
205 3krb_A Aldose reductase; ssgci 32.1 1.2E+02 0.0041 22.3 6.2 65 10-74 153-224 (334)
206 3av0_A DNA double-strand break 32.1 73 0.0025 23.9 5.0 49 31-79 49-106 (386)
207 1a9x_A Carbamoyl phosphate syn 32.0 20 0.0007 31.2 2.0 57 29-85 996-1054(1073)
208 3gi1_A LBP, laminin-binding pr 31.9 67 0.0023 23.4 4.6 25 51-76 211-235 (286)
209 1b73_A Glutamate racemase; iso 31.8 58 0.002 23.1 4.2 38 33-73 53-91 (254)
210 3mng_A Peroxiredoxin-5, mitoch 31.6 82 0.0028 20.9 4.7 48 35-88 71-123 (173)
211 2pn8_A Peroxiredoxin-4; thiore 31.4 1.1E+02 0.0036 20.8 5.4 49 33-87 73-130 (211)
212 3ha9_A Uncharacterized thiored 31.0 77 0.0026 19.9 4.4 46 42-88 68-129 (165)
213 3f9t_A TDC, L-tyrosine decarbo 31.0 72 0.0025 22.7 4.6 43 31-73 160-206 (397)
214 1t1v_A SH3BGRL3, SH3 domain-bi 30.9 82 0.0028 18.3 4.7 43 44-86 3-55 (93)
215 3dmy_A Protein FDRA; predicted 30.8 69 0.0024 25.6 4.8 44 32-77 51-94 (480)
216 1vbj_A Prostaglandin F synthas 30.8 1.3E+02 0.0044 21.7 6.0 64 11-74 122-192 (281)
217 3kki_A CAI-1 autoinducer synth 30.6 51 0.0018 24.2 3.9 43 31-73 175-221 (409)
218 1zgd_A Chalcone reductase; pol 30.6 1.3E+02 0.0043 21.9 6.0 65 11-75 144-215 (312)
219 3s81_A Putative aspartate race 30.6 51 0.0017 24.0 3.7 39 32-73 89-127 (268)
220 3dod_A Adenosylmethionine-8-am 30.5 72 0.0025 24.0 4.7 43 31-73 197-250 (448)
221 1ko7_A HPR kinase/phosphatase; 30.4 92 0.0032 23.4 5.3 44 35-80 73-116 (314)
222 1vp5_A 2,5-diketo-D-gluconic a 30.4 1.2E+02 0.004 22.2 5.8 64 12-75 131-201 (298)
223 3ln3_A Dihydrodiol dehydrogena 30.4 1.4E+02 0.0047 21.7 6.2 64 11-74 145-217 (324)
224 1s0a_A Adenosylmethionine-8-am 30.3 44 0.0015 24.8 3.4 51 31-82 191-252 (429)
225 3k4h_A Putative transcriptiona 30.2 1.1E+02 0.0038 20.9 5.4 38 32-73 59-97 (292)
226 3out_A Glutamate racemase; str 30.1 49 0.0017 24.1 3.6 38 34-73 61-99 (268)
227 1hw6_A 2,5-diketo-D-gluconic a 30.0 90 0.0031 22.4 5.0 64 11-74 117-187 (278)
228 3dxv_A Alpha-amino-epsilon-cap 29.9 95 0.0032 23.0 5.3 43 31-73 187-240 (439)
229 8abp_A L-arabinose-binding pro 29.8 1.3E+02 0.0044 20.7 5.7 39 34-73 49-87 (306)
230 3o0k_A Aldo/keto reductase; ss 29.7 1.1E+02 0.0036 22.2 5.4 64 11-74 140-210 (283)
231 3hno_A Pyrophosphate-dependent 29.6 47 0.0016 26.1 3.6 49 29-77 91-142 (419)
232 2gs3_A PHGPX, GPX-4, phospholi 29.6 74 0.0025 20.8 4.2 39 34-72 74-116 (185)
233 3szu_A ISPH, 4-hydroxy-3-methy 29.6 72 0.0025 24.4 4.5 52 42-98 225-278 (328)
234 2oqx_A Tryptophanase; lyase, p 29.5 64 0.0022 24.1 4.3 43 31-73 169-222 (467)
235 3qvl_A Putative hydantoin race 29.4 94 0.0032 22.1 5.0 52 39-96 66-117 (245)
236 1o69_A Aminotransferase; struc 29.2 62 0.0021 23.8 4.1 43 31-73 109-154 (394)
237 3p9d_A T-complex protein 1 sub 29.1 1.3E+02 0.0045 24.2 6.3 51 33-88 283-336 (559)
238 3p9d_H T-complex protein 1 sub 29.0 1.1E+02 0.0039 24.7 5.9 52 32-88 285-339 (568)
239 1we0_A Alkyl hydroperoxide red 29.0 1.2E+02 0.0041 19.6 6.6 51 34-88 57-111 (187)
240 3ewl_A Uncharacterized conserv 29.0 99 0.0034 18.7 5.6 49 36-87 57-107 (142)
241 3b3d_A YTBE protein, putative 28.9 1.1E+02 0.0036 22.5 5.3 63 12-74 158-227 (314)
242 2lnd_A De novo designed protei 28.9 1.1E+02 0.0037 19.0 6.4 55 30-84 39-94 (112)
243 4gie_A Prostaglandin F synthas 28.9 1.5E+02 0.0051 21.3 6.1 63 12-74 127-196 (290)
244 3lvj_C Sulfurtransferase TUSA; 28.9 87 0.003 18.4 4.0 37 34-73 27-66 (82)
245 1uul_A Tryparedoxin peroxidase 28.8 1.3E+02 0.0044 19.9 5.5 50 33-88 61-119 (202)
246 2glf_A Probable M18-family ami 28.7 29 0.00098 27.5 2.2 25 51-75 367-391 (450)
247 3nav_A Tryptophan synthase alp 28.7 1.7E+02 0.0058 21.3 7.6 76 8-85 78-170 (271)
248 3tfu_A Adenosylmethionine-8-am 28.7 51 0.0017 25.2 3.6 42 32-73 221-273 (457)
249 1s1p_A Aldo-keto reductase fam 28.3 1.4E+02 0.0049 21.9 6.0 64 11-74 144-216 (331)
250 3auf_A Glycinamide ribonucleot 28.2 1E+02 0.0035 21.9 5.0 40 31-73 36-77 (229)
251 2h30_A Thioredoxin, peptide me 28.2 93 0.0032 19.3 4.4 46 41-88 70-120 (164)
252 2vt1_B Surface presentation of 28.2 38 0.0013 21.1 2.3 27 56-86 28-54 (93)
253 1t5o_A EIF2BD, translation ini 28.2 58 0.002 24.9 3.8 37 37-73 220-263 (351)
254 2w6k_A COBE; biosynthetic prot 28.1 31 0.0011 23.1 2.0 27 58-86 58-84 (145)
255 2zyj_A Alpha-aminodipate amino 28.0 63 0.0022 23.5 3.9 43 31-73 151-201 (397)
256 1toa_A Tromp-1, protein (perip 28.0 80 0.0027 23.4 4.5 23 50-72 228-250 (313)
257 4f4e_A Aromatic-amino-acid ami 28.0 93 0.0032 23.0 4.9 43 31-73 182-233 (420)
258 2x7j_A 2-succinyl-5-enolpyruvy 28.0 87 0.003 25.1 5.0 42 32-73 234-275 (604)
259 3a2b_A Serine palmitoyltransfe 27.9 89 0.003 22.7 4.8 43 31-73 159-208 (398)
260 3fq8_A Glutamate-1-semialdehyd 27.8 93 0.0032 23.0 4.9 43 31-73 186-238 (427)
261 4ap5_A GDP-fucose protein O-fu 27.8 36 0.0012 26.0 2.6 45 33-81 294-338 (408)
262 1xpj_A Hypothetical protein; s 27.8 1.1E+02 0.0037 19.0 4.6 45 27-71 25-80 (126)
263 3h8v_A Ubiquitin-like modifier 27.8 44 0.0015 24.8 3.0 32 41-73 136-167 (292)
264 3piu_A 1-aminocyclopropane-1-c 27.6 93 0.0032 23.0 4.9 43 31-73 175-229 (435)
265 1tjy_A Sugar transport protein 27.6 1.1E+02 0.0038 21.6 5.2 37 35-73 53-90 (316)
266 3bc8_A O-phosphoseryl-tRNA(SEC 27.5 62 0.0021 25.6 4.0 44 30-73 183-233 (450)
267 3dc7_A Putative uncharacterize 27.5 78 0.0027 21.2 4.1 44 30-73 115-179 (232)
268 2epj_A Glutamate-1-semialdehyd 27.4 66 0.0023 23.9 4.0 43 31-73 190-242 (434)
269 3o3r_A Aldo-keto reductase fam 27.4 1.8E+02 0.0061 21.1 6.5 65 10-74 137-210 (316)
270 1ynp_A Oxidoreductase, AKR11C1 27.4 1.8E+02 0.0062 21.2 7.9 63 12-74 148-216 (317)
271 2ywr_A Phosphoribosylglycinami 27.4 1E+02 0.0034 21.6 4.8 40 31-73 15-56 (216)
272 1sff_A 4-aminobutyrate aminotr 27.4 72 0.0025 23.4 4.2 51 31-82 184-246 (426)
273 1qmv_A Human thioredoxin perox 27.3 53 0.0018 21.8 3.2 49 34-88 60-117 (197)
274 1lu4_A Soluble secreted antige 27.2 1E+02 0.0035 18.2 5.1 54 42-99 55-108 (136)
275 1mzr_A 2,5-diketo-D-gluconate 27.1 1.1E+02 0.0036 22.4 5.0 64 11-74 137-207 (296)
276 3dbi_A Sugar-binding transcrip 27.1 1.2E+02 0.0042 21.4 5.3 38 34-73 111-148 (338)
277 3hdc_A Thioredoxin family prot 27.1 55 0.0019 20.6 3.1 34 65-99 91-124 (158)
278 2oat_A Ornithine aminotransfer 27.0 1E+02 0.0035 23.2 5.1 51 31-82 212-270 (439)
279 3aq1_B Thermosome subunit; gro 27.0 1.5E+02 0.0053 23.4 6.3 48 32-84 228-275 (500)
280 3tzt_A Glycosyl transferase fa 27.0 1.4E+02 0.0047 21.4 5.6 44 29-72 18-65 (276)
281 2wzm_A Aldo-keto reductase; ox 27.0 1.1E+02 0.0037 22.1 5.0 64 11-74 125-195 (283)
282 3cmm_A Ubiquitin-activating en 27.0 41 0.0014 29.5 3.1 35 42-77 113-147 (1015)
283 1nm3_A Protein HI0572; hybrid, 27.0 1.5E+02 0.0052 20.2 6.2 50 33-88 59-112 (241)
284 3nnk_A Ureidoglycine-glyoxylat 27.0 41 0.0014 24.4 2.7 43 31-73 127-173 (411)
285 3l6u_A ABC-type sugar transpor 26.9 1.5E+02 0.005 20.3 5.6 40 33-73 55-94 (293)
286 2prs_A High-affinity zinc upta 26.8 91 0.0031 22.5 4.6 40 51-91 206-247 (284)
287 3ztl_A Thioredoxin peroxidase; 26.7 74 0.0025 21.7 3.9 54 33-88 94-152 (222)
288 3n5m_A Adenosylmethionine-8-am 26.7 90 0.0031 23.4 4.7 43 31-73 201-254 (452)
289 1je3_A EC005, hypothetical 8.6 26.6 90 0.0031 19.2 3.9 39 33-73 43-83 (97)
290 4eu1_A Mitochondrial aspartate 26.6 98 0.0034 22.6 4.8 43 31-73 170-221 (409)
291 3d03_A Phosphohydrolase; glyce 26.6 1.5E+02 0.0052 20.1 6.2 49 31-79 28-82 (274)
292 2z9v_A Aspartate aminotransfer 26.5 71 0.0024 23.0 3.9 43 31-73 122-169 (392)
293 1us0_A Aldose reductase; oxido 26.5 1.7E+02 0.0059 21.2 6.1 64 11-74 138-210 (316)
294 2a7v_A Serine hydroxymethyltra 26.4 74 0.0025 25.1 4.3 45 29-73 190-236 (490)
295 2jfn_A Glutamate racemase; cel 26.3 1.1E+02 0.0039 22.1 5.0 33 39-73 81-113 (285)
296 4gac_A Alcohol dehydrogenase [ 26.2 1.6E+02 0.0054 21.3 5.8 64 11-74 139-209 (324)
297 3jtx_A Aminotransferase; NP_28 26.2 38 0.0013 24.6 2.4 41 32-73 159-206 (396)
298 1zma_A Bacterocin transport ac 26.1 1.1E+02 0.0036 18.1 4.6 60 29-88 17-86 (118)
299 3kax_A Aminotransferase, class 26.0 1.1E+02 0.0036 21.9 4.8 42 31-73 146-194 (383)
300 2prs_A High-affinity zinc upta 26.0 80 0.0027 22.8 4.1 39 32-73 213-251 (284)
301 2i0x_A Hypothetical protein PF 26.0 36 0.0012 20.5 1.9 26 45-70 2-27 (85)
302 1w2w_B 5-methylthioribose-1-ph 26.0 55 0.0019 22.8 3.1 43 31-73 38-90 (191)
303 3iyg_B T-complex protein 1 sub 25.9 1.4E+02 0.0047 23.7 5.8 50 33-87 264-316 (513)
304 2dr1_A PH1308 protein, 386AA l 25.9 79 0.0027 22.6 4.1 43 31-73 134-181 (386)
305 3hh1_A Tetrapyrrole methylase 25.9 1.2E+02 0.0042 18.7 5.7 41 33-73 71-113 (117)
306 3t7y_A YOP proteins translocat 25.9 36 0.0012 21.4 1.9 26 56-85 43-68 (97)
307 3hz7_A Uncharacterized protein 25.9 1.1E+02 0.0038 18.3 4.3 31 40-73 28-58 (87)
308 1afs_A 3-alpha-HSD, 3-alpha-hy 25.8 1.4E+02 0.0048 21.8 5.5 64 11-74 144-216 (323)
309 3ceu_A Thiamine phosphate pyro 25.7 55 0.0019 22.5 3.1 54 32-88 17-72 (210)
310 2pr7_A Haloacid dehalogenase/e 25.6 1.1E+02 0.0038 18.1 4.5 12 59-70 79-90 (137)
311 3lq1_A 2-succinyl-5-enolpyruvy 25.5 98 0.0034 24.6 4.9 41 32-73 215-255 (578)
312 3cx3_A Lipoprotein; zinc-bindi 25.4 73 0.0025 23.1 3.8 25 50-75 208-232 (284)
313 1prx_A HORF6; peroxiredoxin, h 25.4 1.7E+02 0.0057 20.1 5.7 53 33-87 56-116 (224)
314 1m32_A 2-aminoethylphosphonate 25.4 75 0.0026 22.4 3.8 43 31-73 119-166 (366)
315 1xcc_A 1-Cys peroxiredoxin; un 25.2 1.7E+02 0.0057 20.1 5.7 52 34-87 57-113 (220)
316 3h75_A Periplasmic sugar-bindi 25.1 1.1E+02 0.0039 21.8 4.8 37 35-73 54-91 (350)
317 2yvk_A Methylthioribose-1-phos 25.1 64 0.0022 25.0 3.6 38 36-73 246-291 (374)
318 3k7y_A Aspartate aminotransfer 25.1 1E+02 0.0034 23.3 4.7 43 31-73 161-212 (405)
319 2bkw_A Alanine-glyoxylate amin 25.1 68 0.0023 22.9 3.6 43 31-73 126-174 (385)
320 3o74_A Fructose transport syst 25.0 1.3E+02 0.0045 20.2 5.0 39 33-73 49-87 (272)
321 3gbv_A Putative LACI-family tr 24.9 1.6E+02 0.0055 20.1 5.5 39 34-73 61-99 (304)
322 4fbw_A DNA repair protein RAD3 24.7 86 0.0029 24.5 4.3 24 31-54 41-64 (417)
323 4ddu_A Reverse gyrase; topoiso 24.7 1.4E+02 0.0047 26.2 5.9 62 29-90 644-713 (1104)
324 3c01_E Surface presentation of 24.6 39 0.0013 21.3 1.9 26 56-85 28-53 (98)
325 3qk7_A Transcriptional regulat 24.6 1.5E+02 0.005 20.6 5.2 41 31-76 54-95 (294)
326 3kcq_A Phosphoribosylglycinami 24.5 96 0.0033 21.9 4.2 49 33-85 24-78 (215)
327 3p7x_A Probable thiol peroxida 24.4 1.4E+02 0.0048 18.9 5.2 44 41-88 76-121 (166)
328 3fdb_A Beta C-S lyase, putativ 24.3 1.4E+02 0.0046 21.3 5.1 42 31-73 140-188 (377)
329 2o1e_A YCDH; alpha-beta protei 24.3 83 0.0028 23.2 4.0 38 50-88 221-264 (312)
330 2zv3_A PTH, peptidyl-tRNA hydr 24.3 1.4E+02 0.0048 18.9 4.6 70 31-108 38-108 (115)
331 3bb8_A CDP-4-keto-6-deoxy-D-gl 24.3 44 0.0015 25.0 2.5 42 31-73 148-190 (437)
332 1y0n_A Hypothetical UPF0270 pr 24.1 55 0.0019 19.9 2.4 17 31-47 40-56 (78)
333 1g9r_A Glycosyl transferase; a 24.1 1E+02 0.0034 22.4 4.4 45 28-72 12-60 (311)
334 3lou_A Formyltetrahydrofolate 24.0 1.8E+02 0.0063 21.4 5.8 42 27-73 101-148 (292)
335 3p94_A GDSL-like lipase; serin 23.9 1.5E+02 0.005 19.0 5.3 44 30-73 102-160 (204)
336 2glj_A Probable M18-family ami 23.9 44 0.0015 26.5 2.5 24 51-74 379-402 (461)
337 1jg8_A L-ALLO-threonine aldola 23.9 87 0.003 22.1 3.9 43 31-73 116-171 (347)
338 4gqc_A Thiol peroxidase, perox 23.8 81 0.0028 20.5 3.5 48 36-87 61-108 (164)
339 2kvu_A MKL/myocardin-like prot 23.7 50 0.0017 19.9 2.2 35 48-85 22-56 (75)
340 3eeq_A Putative cobalamin bios 23.7 1.1E+02 0.0038 23.1 4.7 24 60-85 253-276 (336)
341 3t1i_A Double-strand break rep 23.7 1.2E+02 0.004 23.8 4.9 23 32-54 61-83 (431)
342 2dt5_A AT-rich DNA-binding pro 23.6 94 0.0032 21.7 4.0 48 28-79 127-174 (211)
343 1v72_A Aldolase; PLP-dependent 23.6 88 0.003 22.0 3.9 43 31-73 123-178 (356)
344 1s3l_A Hypothetical protein MJ 23.6 1.7E+02 0.0058 19.5 5.7 43 32-77 42-84 (190)
345 1a6d_B Thermosome (beta subuni 23.5 1.8E+02 0.006 23.3 6.0 47 33-84 276-322 (543)
346 3tb6_A Arabinose metabolism tr 23.5 1.7E+02 0.0059 19.9 5.4 41 33-73 62-104 (298)
347 1t9k_A Probable methylthioribo 23.5 80 0.0027 24.1 3.8 37 37-73 222-266 (347)
348 1xvl_A Mn transporter, MNTC pr 23.4 1.2E+02 0.0042 22.5 4.8 38 50-88 235-278 (321)
349 3huu_A Transcription regulator 23.3 1.7E+02 0.0058 20.3 5.4 40 32-76 73-113 (305)
350 3p9d_D T-complex protein 1 sub 23.3 1.6E+02 0.0056 23.4 5.8 54 34-88 274-331 (528)
351 2ch1_A 3-hydroxykynurenine tra 23.2 65 0.0022 23.3 3.2 43 31-73 132-178 (396)
352 3eag_A UDP-N-acetylmuramate:L- 23.2 1.7E+02 0.006 21.2 5.6 49 42-97 66-114 (326)
353 2obi_A PHGPX, GPX-4, phospholi 23.2 1.1E+02 0.0039 19.7 4.2 39 34-72 72-114 (183)
354 2w8t_A SPT, serine palmitoyltr 23.1 1.1E+02 0.0039 22.6 4.6 43 31-73 180-229 (427)
355 3n0v_A Formyltetrahydrofolate 23.1 2E+02 0.0068 21.1 5.9 42 27-73 96-143 (286)
356 3q58_A N-acetylmannosamine-6-p 23.1 2E+02 0.0068 20.2 7.1 54 32-85 92-146 (229)
357 3ruy_A Ornithine aminotransfer 23.1 1E+02 0.0035 22.3 4.3 49 32-82 173-229 (392)
358 1a6d_A Thermosome (alpha subun 23.1 1.5E+02 0.0052 23.7 5.6 47 33-84 275-321 (545)
359 2cjg_A L-lysine-epsilon aminot 23.1 75 0.0026 24.0 3.6 48 34-82 221-278 (449)
360 3meb_A Aspartate aminotransfer 23.0 90 0.0031 23.5 4.1 43 31-73 189-240 (448)
361 3hh8_A Metal ABC transporter s 23.0 91 0.0031 22.8 4.0 37 51-88 215-257 (294)
362 1vp4_A Aminotransferase, putat 23.0 1.2E+02 0.004 22.4 4.7 43 31-73 169-226 (425)
363 3hcw_A Maltose operon transcri 23.0 1.9E+02 0.0065 19.9 5.6 37 33-73 59-96 (295)
364 3cni_A Putative ABC type-2 tra 22.9 1.6E+02 0.0053 18.9 5.8 64 41-107 9-72 (156)
365 1k7c_A Rhamnogalacturonan acet 22.9 1.5E+02 0.005 20.2 4.9 16 58-73 153-168 (233)
366 3tqr_A Phosphoribosylglycinami 22.9 2E+02 0.0069 20.2 6.4 38 33-73 21-59 (215)
367 3iyg_A T-complex protein 1 sub 22.9 1.8E+02 0.0063 23.1 6.0 50 34-88 268-320 (529)
368 1y8q_B Anthracycline-, ubiquit 22.7 49 0.0017 27.5 2.6 35 41-77 107-141 (640)
369 2pb2_A Acetylornithine/succiny 22.7 92 0.0031 23.2 4.0 49 32-82 192-248 (420)
370 1r5j_A Putative phosphotransac 22.7 2E+02 0.0067 21.3 5.9 52 32-85 14-65 (337)
371 2yzh_A Probable thiol peroxida 22.7 1.2E+02 0.004 19.4 4.2 43 41-88 78-122 (171)
372 1rv3_A Serine hydroxymethyltra 22.7 96 0.0033 23.8 4.2 42 31-73 182-226 (483)
373 3da8_A Probable 5'-phosphoribo 22.6 1.3E+02 0.0043 21.3 4.5 27 43-73 39-65 (215)
374 3rg8_A Phosphoribosylaminoimid 22.6 51 0.0017 22.6 2.3 29 45-73 6-34 (159)
375 3qi7_A Putative transcriptiona 22.6 1.4E+02 0.0048 23.0 5.1 49 25-73 139-193 (371)
376 2ioy_A Periplasmic sugar-bindi 22.6 1.8E+02 0.0062 19.9 5.4 39 34-73 49-87 (283)
377 3qmx_A Glutaredoxin A, glutare 22.6 1.1E+02 0.0037 18.3 3.7 9 65-73 37-45 (99)
378 1zod_A DGD, 2,2-dialkylglycine 22.5 63 0.0022 23.9 3.0 51 31-82 189-250 (433)
379 2f9y_A Acetyl-COA carboxylase, 22.4 63 0.0021 24.6 3.0 33 44-76 132-182 (339)
380 1ii7_A MRE11 nuclease; RAD50, 22.3 1.9E+02 0.0066 20.9 5.7 22 32-53 30-51 (333)
381 2hiy_A Hypothetical protein; C 22.1 9.8 0.00033 26.5 -1.5 52 30-86 35-90 (183)
382 2huf_A Alanine glyoxylate amin 21.9 76 0.0026 22.8 3.3 43 31-73 133-179 (393)
383 3zyw_A Glutaredoxin-3; metal b 21.9 1.2E+02 0.0041 18.6 3.9 14 60-73 37-50 (111)
384 3ry7_A Ribokinase; transferase 21.9 1.1E+02 0.0038 21.5 4.2 30 43-72 134-163 (304)
385 3u9r_B MCC beta, methylcrotony 21.8 52 0.0018 26.9 2.6 34 44-77 358-396 (555)
386 2a0u_A Initiation factor 2B; S 21.8 80 0.0027 24.5 3.5 37 37-73 251-295 (383)
387 3ilx_A First ORF in transposon 21.6 1E+02 0.0034 20.0 3.6 44 29-73 50-96 (143)
388 1vjo_A Alanine--glyoxylate ami 21.6 61 0.0021 23.4 2.7 43 31-73 148-194 (393)
389 2cy8_A D-phgat, D-phenylglycin 21.5 1.3E+02 0.0045 22.4 4.7 43 31-73 188-240 (453)
390 3gv0_A Transcriptional regulat 21.5 2E+02 0.0068 19.7 5.4 38 32-73 56-94 (288)
391 2wci_A Glutaredoxin-4; redox-a 21.5 1.3E+02 0.0046 19.3 4.2 53 32-88 26-89 (135)
392 2fp4_A Succinyl-COA ligase [GD 21.4 1.5E+02 0.005 21.9 4.8 39 34-72 88-127 (305)
393 3qpm_A Peroxiredoxin; oxidored 21.4 2.1E+02 0.0072 19.8 6.3 51 32-88 101-160 (240)
394 2ez2_A Beta-tyrosinase, tyrosi 21.3 1.1E+02 0.0038 22.7 4.3 43 31-73 160-213 (456)
395 2bzr_A Propionyl-COA carboxyla 21.3 63 0.0022 26.3 3.0 33 44-76 348-390 (548)
396 3ipz_A Monothiol glutaredoxin- 21.3 1.3E+02 0.0044 18.2 3.9 51 34-88 11-72 (109)
397 3k28_A Glutamate-1-semialdehyd 21.2 1.1E+02 0.0037 22.7 4.1 42 32-73 188-239 (429)
398 3obi_A Formyltetrahydrofolate 21.2 1.3E+02 0.0043 22.2 4.4 43 27-73 95-143 (288)
399 3d02_A Putative LACI-type tran 21.2 1.9E+02 0.0064 19.8 5.2 38 35-73 54-91 (303)
400 3uug_A Multiple sugar-binding 21.1 1.6E+02 0.0055 20.6 4.9 39 34-73 51-89 (330)
401 3hvy_A Cystathionine beta-lyas 21.1 1.7E+02 0.0057 22.5 5.3 44 30-73 163-217 (427)
402 2v2g_A Peroxiredoxin 6; oxidor 21.1 1.7E+02 0.0058 20.4 5.0 53 34-88 55-113 (233)
403 3aow_A Putative uncharacterize 21.0 1.4E+02 0.0048 22.5 4.8 43 31-73 200-255 (448)
404 3ors_A N5-carboxyaminoimidazol 21.0 59 0.002 22.4 2.4 29 45-73 7-35 (163)
405 2fgx_A Putative thioredoxin; N 21.0 1.3E+02 0.0043 18.7 3.9 47 45-91 33-82 (107)
406 3trh_A Phosphoribosylaminoimid 20.9 60 0.002 22.5 2.4 29 45-73 10-38 (169)
407 3ftb_A Histidinol-phosphate am 20.9 1.1E+02 0.0038 21.6 4.0 40 32-73 136-182 (361)
408 1qgn_A Protein (cystathionine 20.8 1.6E+02 0.0056 22.6 5.2 43 31-73 189-235 (445)
409 3egc_A Putative ribose operon 20.8 1.2E+02 0.0043 20.7 4.2 38 33-73 55-92 (291)
410 2fvy_A D-galactose-binding per 20.8 2.1E+02 0.0072 19.6 5.6 39 34-73 51-89 (309)
411 1y7e_A Probable M18-family ami 20.8 39 0.0013 26.7 1.6 25 51-75 376-400 (458)
412 3ndn_A O-succinylhomoserine su 20.8 1.3E+02 0.0044 22.7 4.5 45 31-77 156-204 (414)
413 1t3i_A Probable cysteine desul 20.7 1.2E+02 0.004 21.9 4.2 42 31-73 159-204 (420)
414 1q98_A Thiol peroxidase, TPX; 20.7 1.6E+02 0.0054 18.7 4.5 44 41-88 74-119 (165)
415 4gsl_A Ubiquitin-like modifier 20.6 88 0.003 25.9 3.7 31 42-73 431-461 (615)
416 1h1j_S THO1 protein; SAP domai 20.6 53 0.0018 18.1 1.7 32 50-84 3-34 (51)
417 1pav_A Hypothetical protein TA 20.5 43 0.0015 19.4 1.4 36 34-72 23-61 (78)
418 1wik_A Thioredoxin-like protei 20.5 1.5E+02 0.0051 17.7 5.1 29 60-88 36-69 (109)
419 3euc_A Histidinol-phosphate am 20.5 90 0.0031 22.3 3.5 43 31-73 146-197 (367)
420 2pwj_A Mitochondrial peroxired 20.4 1.5E+02 0.005 19.3 4.3 47 36-88 72-123 (171)
421 1srv_A Protein (groel (HSP60 c 20.4 57 0.0019 22.1 2.1 15 43-57 54-68 (145)
422 1q3q_A Thermosome alpha subuni 20.3 1.7E+02 0.0058 23.5 5.3 47 33-84 278-324 (548)
423 3ht4_A Aluminum resistance pro 20.2 1.4E+02 0.0046 22.9 4.6 42 31-73 155-206 (431)
424 3op7_A Aminotransferase class 20.2 1.4E+02 0.0047 21.4 4.4 42 31-73 144-192 (375)
425 2ct6_A SH3 domain-binding glut 20.2 1.4E+02 0.0049 18.1 4.0 42 44-85 9-60 (111)
426 3guv_A Site-specific recombina 20.2 1.2E+02 0.004 19.8 3.7 47 29-77 60-113 (167)
427 3i16_A Aluminum resistance pro 20.2 2E+02 0.0068 22.1 5.5 43 31-73 164-217 (427)
428 3lhk_A Putative DNA binding pr 20.1 1.2E+02 0.0041 19.8 3.8 46 29-76 53-101 (154)
429 4g2e_A Peroxiredoxin; redox pr 20.0 1.1E+02 0.0038 19.5 3.6 46 38-87 60-105 (157)
430 3m9w_A D-xylose-binding peripl 20.0 2E+02 0.0069 19.9 5.2 40 33-73 49-88 (313)
No 1
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=100.00 E-value=2e-36 Score=204.20 Aligned_cols=111 Identities=75% Similarity=1.203 Sum_probs=105.3
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033719 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 1 ~~~~~~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
|+..|++++..++|+++|++|+|+|+++.|+++|+++|++|+++|||+|+|++|+++++|.++|+.++|||+.|.+|++|
T Consensus 1 ~~~~~~~~~~~~~i~~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~e 80 (112)
T 3iz5_f 1 MAPTKKAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVD 80 (112)
T ss_dssp CBTTBSCCCGGGHHHHHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCT
T ss_pred CCccccccccHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHH
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999953399999
Q ss_pred HHhhhCCcccEEEEEEeCcCchHHHhcCCCC
Q 033719 81 LGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111 (112)
Q Consensus 81 LG~a~Gk~~~~~vvaI~d~g~a~~i~~~~~~ 111 (112)
||.|||+++++++++|+|+|||++|.++.+.
T Consensus 81 LG~A~Gk~~~v~~vaI~D~G~a~~l~~~~~~ 111 (112)
T 3iz5_f 81 LGTACGKYYRVCCLSILDPGDSDIISTTTTT 111 (112)
T ss_dssp HHHHHCTTCSSCEEEEECCSCCSHHHHTTSC
T ss_pred HHHHhCCccceEEEEEeccchHHHHHhcccc
Confidence 9999999999888999999999999988764
No 2
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=100.00 E-value=4.3e-35 Score=195.37 Aligned_cols=100 Identities=60% Similarity=0.963 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+..++++++|++|+|+|+++.|+++|+++|++|++++||+|+|++|++++++.++|+.++|||++|++|++|||.|||++
T Consensus 5 k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~ 84 (105)
T 3u5e_c 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKL 84 (105)
T ss_dssp ----CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999996689999999999999
Q ss_pred ccEEEEEEeCcCchHHHhcC
Q 033719 89 FRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 89 ~~~~vvaI~d~g~a~~i~~~ 108 (112)
+++++++|+|+|||++|.++
T Consensus 85 ~~~~~vaI~D~G~a~~l~~~ 104 (105)
T 3u5e_c 85 FRVGVVSILEAGDSDILTTL 104 (105)
T ss_dssp SCCSEEEEEECCSCCTTTTT
T ss_pred ccEEEEEEeccchHHHHHhc
Confidence 99888999999999999764
No 3
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=100.00 E-value=7.3e-35 Score=193.86 Aligned_cols=98 Identities=58% Similarity=1.069 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcc
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYF 89 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~ 89 (112)
..++++++|++|+|+|+++.|+++|+++|++|++++||+|+|++|++++++.++|+.++|||+.|++|++|||.|||+++
T Consensus 6 ~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~ 85 (104)
T 4a18_G 6 TQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYH 85 (104)
T ss_dssp --CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999966999999999999999
Q ss_pred cEEEEEEeCcCchHHHhc
Q 033719 90 RVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 90 ~~~vvaI~d~g~a~~i~~ 107 (112)
+++++||+|+|||++|.+
T Consensus 86 ~~~~vaI~D~G~a~~l~~ 103 (104)
T 4a18_G 86 RCSTMAILDAGDSDILKT 103 (104)
T ss_dssp CCSEEEEEECSSCGGGCC
T ss_pred CEEEEEEeccchHHHhhc
Confidence 988899999999999864
No 4
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=100.00 E-value=1.8e-34 Score=197.89 Aligned_cols=111 Identities=72% Similarity=1.197 Sum_probs=93.6
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033719 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 1 ~~~~~~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
||..|++++..++++++|++|+|+|+++.|+++|+++|++|++++||+|+|++|+++++++++|...++|+..|++|++|
T Consensus 2 ~~~~~~~~~~~~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~~~~~ki~~~~~~~~~~V~~~~~sk~e 81 (125)
T 3vi6_A 2 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIE 81 (125)
T ss_dssp --------CCSSCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCHHH
T ss_pred CcccccchhhHHHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhCCCcEEEcCCHHH
Confidence 78888889999999999999999999999999999999999999999999999999999999999988887657999999
Q ss_pred HHhhhCCcccEEEEEEeCcCchHHHhcCCCC
Q 033719 81 LGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 111 (112)
Q Consensus 81 LG~a~Gk~~~~~vvaI~d~g~a~~i~~~~~~ 111 (112)
||.|||++++++++||+|+|||+.|.++.++
T Consensus 82 LG~A~Gk~~~v~~vaI~D~G~a~~l~~~~~~ 112 (125)
T 3vi6_A 82 LGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 112 (125)
T ss_dssp HHHHTTCSSCCCEEEEEECTTCCCC------
T ss_pred HHHHhCCcccEEEEEEeCchhHHHHHHHHHh
Confidence 9999999999878999999999999887643
No 5
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=100.00 E-value=1.8e-33 Score=186.08 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCccc
Q 033719 11 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 90 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~ 90 (112)
.++++++||+|+|+|+++.|+++|.++|++|++++||+|+|++|+++++++++|+.++|||+ |++|++|||.|||++++
T Consensus 3 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~-~~~s~~eLG~a~Gk~~~ 81 (101)
T 3on1_A 3 EAKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVK-VVGNRQMLGRAIGKHER 81 (101)
T ss_dssp CCHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEE-EESCHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EeCCHHHHHHHhCCcCe
Confidence 36899999999999999999999999999999999999999999999999999999999999 69999999999999866
Q ss_pred EEEEEEeCcCchHHHhcCCC
Q 033719 91 VSCLSIIDPGDSDIIKSLPG 110 (112)
Q Consensus 91 ~~vvaI~d~g~a~~i~~~~~ 110 (112)
+ ++||+|+|||+.|.++.+
T Consensus 82 ~-~vai~d~g~a~~i~~~~~ 100 (101)
T 3on1_A 82 V-VIGVKDAGFSRKLAALID 100 (101)
T ss_dssp S-EEEECCHHHHHHHHHHHH
T ss_pred E-EEEEECccHHHHHHHHhc
Confidence 6 699999999999987654
No 6
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.98 E-value=8.7e-33 Score=182.96 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccE
Q 033719 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV 91 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~ 91 (112)
++++++||+|+|||+++.|+++|.++|++|++++||+|+|++|+++++++++|+.++|||+ +++|++|||.|||+++++
T Consensus 5 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~-~~~s~~eLG~A~Gk~~~~ 83 (101)
T 3v7q_A 5 MEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYK-KVESRAVLGRSIGKEARV 83 (101)
T ss_dssp CTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEE-EESCHHHHHHHTTSSCCS
T ss_pred chhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCee-eechHHHHHhhhCccceE
Confidence 5799999999999999999999999999999999999999999999999999999999999 489999999999999876
Q ss_pred EEEEEeCcCchHHHhcCC
Q 033719 92 SCLSIIDPGDSDIIKSLP 109 (112)
Q Consensus 92 ~vvaI~d~g~a~~i~~~~ 109 (112)
++||+|+|||+.|.++.
T Consensus 84 -~~ai~D~g~a~~i~~~~ 100 (101)
T 3v7q_A 84 -VVAVTDQGFANKLISLL 100 (101)
T ss_dssp -EEEECCHHHHHHHHHHC
T ss_pred -EEEEeccHHHHHHHHhc
Confidence 69999999999997653
No 7
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.98 E-value=1.7e-32 Score=180.80 Aligned_cols=95 Identities=37% Similarity=0.631 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEE
Q 033719 13 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVS 92 (112)
Q Consensus 13 ~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~ 92 (112)
+|.++|++|+|+|+++.|+++|.++|++|++++||+|+|++++++++++++|++++||++.|++|++|||.|||++++++
T Consensus 2 di~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~ 81 (99)
T 3j21_Z 2 DLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVA 81 (99)
T ss_dssp HHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSE
T ss_pred CHHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999998766799999999999999888
Q ss_pred EEEEeCcCchHHHhc
Q 033719 93 CLSIIDPGDSDIIKS 107 (112)
Q Consensus 93 vvaI~d~g~a~~i~~ 107 (112)
++||+|+|||++|..
T Consensus 82 ~vaI~d~g~a~~l~~ 96 (99)
T 3j21_Z 82 SLAIVDPGESKILAI 96 (99)
T ss_dssp EEEESSCSSCSHHHH
T ss_pred EEEEEccchHHHHHh
Confidence 899999999999865
No 8
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=8.2e-32 Score=180.68 Aligned_cols=97 Identities=30% Similarity=0.566 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcc
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYF 89 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~ 89 (112)
..++++++|++|+|+|+++.|+++|.++|++|++++||+|+|++++++++|+++|++++||++.|++|++|||.|||+++
T Consensus 5 ~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~ 84 (110)
T 3cpq_A 5 ENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPF 84 (110)
T ss_dssp --CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCcc
Confidence 67899999999999999999999999999999999999999999999999999999999998864599999999999998
Q ss_pred cEEEEEEeCcCchHHHhc
Q 033719 90 RVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 90 ~~~vvaI~d~g~a~~i~~ 107 (112)
++++++|+|+||++ |.+
T Consensus 85 ~~s~vaI~d~g~a~-i~~ 101 (110)
T 3cpq_A 85 PVAALLVLDEGLSN-IME 101 (110)
T ss_dssp CCSEEEEEECTTCC-HHH
T ss_pred ceEEEEEecCCHHH-HHH
Confidence 87789999999999 544
No 9
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.97 E-value=1.4e-31 Score=176.85 Aligned_cols=97 Identities=33% Similarity=0.544 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccE
Q 033719 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV 91 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~ 91 (112)
++++++|++|+|+|+++.|.++|.++|++|++++||+|+|++++++++++.+|++++||++.|++|++|||.|||+++++
T Consensus 2 ~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~ 81 (101)
T 1w41_A 2 VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTV 81 (101)
T ss_dssp CCHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCC
T ss_pred chHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcE
Confidence 47899999999999999999999999999999999999999999999999999999999886569999999999999887
Q ss_pred EEEEEeCcCchHHHhcCC
Q 033719 92 SCLSIIDPGDSDIIKSLP 109 (112)
Q Consensus 92 ~vvaI~d~g~a~~i~~~~ 109 (112)
++++|+|+||++ |.++.
T Consensus 82 ~~vai~d~g~a~-i~~~~ 98 (101)
T 1w41_A 82 SALAVVDPGASR-ILALG 98 (101)
T ss_dssp CEEEEEECTTCC-GGGGG
T ss_pred EEEEEecCCHHH-HHHHh
Confidence 789999999999 55543
No 10
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.96 E-value=5.5e-29 Score=169.06 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
..+.++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|+ .++++..+|++++|||+ |++|++|||.|||
T Consensus 11 ~~l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~-~~~sk~eLG~a~G 89 (120)
T 1vq8_F 11 ADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFI-FVEQQDDLGHAAG 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhC
Confidence 357899999999999999999999999999999999999999999997 59999999999999999 7999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhc
Q 033719 87 KYFRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i~~ 107 (112)
++++++++||+|+|+++.+.+
T Consensus 90 ~~~~~~~vaI~d~g~a~~~~~ 110 (120)
T 1vq8_F 90 LEVGSAAAAVTDAGEADADVE 110 (120)
T ss_dssp CSSCCSEEEESSCSSCHHHHH
T ss_pred CCCCeEEEEEecCchHHHHHH
Confidence 997777899999999987754
No 11
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.96 E-value=6.2e-29 Score=169.23 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033719 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
++.++++++|++|+++|+++.|.++|.++|++|+++|||+|+|++|. .+++|+.+|++++|||+ |++|+.+||+|||+
T Consensus 3 ~l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~g~ 81 (121)
T 2lbw_A 3 KLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYI-FIPSKQDLGAAGAT 81 (121)
T ss_dssp HHHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEE-ECCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEE-EECCHHHHHHHhCC
Confidence 47899999999999999999999999999999999999999999996 69999999999999999 69999999999998
Q ss_pred cccEEEEEEeCcCchHHH
Q 033719 88 YFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 88 ~~~~~vvaI~d~g~a~~i 105 (112)
.+++++++|+|+||++.+
T Consensus 82 k~~~s~v~I~d~g~a~~~ 99 (121)
T 2lbw_A 82 KRPTSVVFIVPGSNKKKD 99 (121)
T ss_dssp SSCCSEEEECCSCTTGGG
T ss_pred CCCEEEEEEEcCcchHHH
Confidence 777778999999999987
No 12
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.96 E-value=6e-29 Score=168.67 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
..+.++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|+ .+++++.+|++++|||+ |++|++|||.|||
T Consensus 9 ~~l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~-~~~sk~eLG~a~G 87 (119)
T 1rlg_A 9 EDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYI-YVKSKNDLGRAVG 87 (119)
T ss_dssp SHHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEE-EeCCHHHHHHHhC
Confidence 357899999999999999999999999999999999999999999997 59999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhc
Q 033719 87 KYFRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i~~ 107 (112)
++++++++||+|+|+++.+.+
T Consensus 88 ~~~~~~~vaI~d~g~a~~~~~ 108 (119)
T 1rlg_A 88 IEVPCASAAIINEGELRKELG 108 (119)
T ss_dssp CSSCCSEEEEEECGGGHHHHH
T ss_pred CCCCeEEEEEecCchHHHHHH
Confidence 997777899999999987754
No 13
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.96 E-value=8.2e-29 Score=169.13 Aligned_cols=99 Identities=17% Similarity=0.305 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.++.++++++|++|+++|+++.|.++|.++|++|++++||+|+|++|+ .++++..+|++++|||+ |++|++|||.|||
T Consensus 10 ~~l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~-~v~sk~eLG~a~G 88 (124)
T 2fc3_A 10 EDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYV-YVPSKKRLGEAAG 88 (124)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhC
Confidence 357899999999999999999999999999999999999999999997 59999999999999999 7999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhc
Q 033719 87 KYFRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i~~ 107 (112)
++++++++||+|+|+++.+.+
T Consensus 89 ~~~~~~~vaI~d~g~a~~~~~ 109 (124)
T 2fc3_A 89 IEVAAASVAIIEPGDAETLVR 109 (124)
T ss_dssp CSSCCSEEEEEECGGGHHHHH
T ss_pred CCCCEEEEEEECcchHHHHHH
Confidence 997677899999999987754
No 14
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.96 E-value=2.3e-28 Score=166.80 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchh-hhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLR-KSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~-~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
..+.++++++|++|+|+|+++.|.++|.++|++|++++||+|+|++|+. ++++..+|++++|||+ |++|++|||.|||
T Consensus 13 ~~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~G 91 (122)
T 3o85_A 13 EELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYV-FIGSKNALGRACN 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEE-EECCHHHHHHHhC
Confidence 3478999999999999999999999999999999999999999999975 8999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCch
Q 033719 87 KYFRVSCLSIIDPGDS 102 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a 102 (112)
+++++++++|+|+|..
T Consensus 92 k~~~vs~vaI~d~~~~ 107 (122)
T 3o85_A 92 VSVPTIVASIGKHDAL 107 (122)
T ss_dssp CSSCCSEEEECCCTTT
T ss_pred CCCCEEEEEEEcccch
Confidence 9999989999999864
No 15
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.95 E-value=7.7e-28 Score=166.67 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhh-hhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033719 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRK-SEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~-~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
.+.++++++|++|+|+|+++.|.++|.++|++|++++||+|+|++|+.. +++..+|++++|||+ |++|++|||.|||+
T Consensus 24 ~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~-~v~sk~eLG~a~G~ 102 (135)
T 2aif_A 24 DLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYV-FVRSKVALGRACGV 102 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEE-EESCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEE-EECCHHHHHHHhCC
Confidence 4678999999999999999999999999999999999999999999865 999999999999999 69999999999999
Q ss_pred cccEEEEEEeCcCchHHHh
Q 033719 88 YFRVSCLSIIDPGDSDIIK 106 (112)
Q Consensus 88 ~~~~~vvaI~d~g~a~~i~ 106 (112)
++++++++|+|++.++.+.
T Consensus 103 ~~~v~~vaI~d~~~s~i~~ 121 (135)
T 2aif_A 103 SRPVIAAAITSKDGSSLSS 121 (135)
T ss_dssp SSCCSEEEEECCTTCTTHH
T ss_pred CCcEEEEEEEcCCcHHHHH
Confidence 9888789999999766543
No 16
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.95 E-value=1.3e-27 Score=165.43 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+..++++++|++|+++|+++.|.++|.++|++|+++|||+|+|++|. ++++|+.+|++++|||+ |++|+.+||+|||
T Consensus 14 ~~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~G 92 (134)
T 2ale_A 14 AALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYV-FVPSRVALGRACG 92 (134)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhC
Confidence 347789999999999999999999999999999999999999999995 99999999999999999 6899999999999
Q ss_pred CcccEEEEEEeCcCc
Q 033719 87 KYFRVSCLSIIDPGD 101 (112)
Q Consensus 87 k~~~~~vvaI~d~g~ 101 (112)
+++++++++|+|++.
T Consensus 93 ~~~~~s~vaI~d~~~ 107 (134)
T 2ale_A 93 VSRPVIAASITTNDA 107 (134)
T ss_dssp CSSCCSEEEEECCTT
T ss_pred CCCCeEEEEEEcCCh
Confidence 998877899999863
No 17
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.94 E-value=2.1e-27 Score=161.44 Aligned_cols=97 Identities=22% Similarity=0.371 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+..++++++|++| |+++.|.++|.++|++|++++||+|+|++|+ .+++++.+|++++|||+ |++|++|||.|||
T Consensus 14 ~~l~~k~~~ll~~A---gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~G 89 (120)
T 1xbi_A 14 EEIQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYA-YVASKQDLGKAAG 89 (120)
T ss_dssp HHHHHHHHHHHHTC---SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc---CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhC
Confidence 46789999999998 9999999999999999999999999999997 59999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhcC
Q 033719 87 KYFRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i~~~ 108 (112)
++++++++||+|+|+++.+.++
T Consensus 90 ~~~~~s~vaI~d~g~a~~l~~l 111 (120)
T 1xbi_A 90 LEVAASSVAIINEGDAEELKVL 111 (120)
T ss_dssp CSSCCSEEEEEECSCHHHHHHH
T ss_pred CCCCEEEEEEeccchHHHHHHH
Confidence 9977778999999999887654
No 18
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.94 E-value=6.4e-28 Score=168.87 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+..++++++|++|+++|+++.|.++|.++|++|+++|||+|+|++|. ++++++.+|++++|||+ |++|+.+||+|||
T Consensus 32 ~~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~-~v~sk~eLG~a~G 110 (144)
T 2jnb_A 32 AHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYV-FVRSKQALGRACG 110 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCE-EESCSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEE-EECCHHHHHHHhC
Confidence 347789999999999999999999999999999999999999999995 99999999999999999 6899999999999
Q ss_pred CcccEEEEEEeCcCchHHH
Q 033719 87 KYFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 87 k~~~~~vvaI~d~g~a~~i 105 (112)
+++++++++|+|+|.++.+
T Consensus 111 k~~~vs~vaI~~~~~s~i~ 129 (144)
T 2jnb_A 111 VSRPVIACSVTIKEGSQLK 129 (144)
T ss_dssp CSSCCSEEEEECCTTCTTH
T ss_pred CCCceEEEEEEeCCcHHHH
Confidence 9999888999999755433
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.92 E-value=1.4e-25 Score=143.32 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=75.2
Q ss_pred HHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033719 18 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 18 Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
|...+|||+++.|.++|.++|++|++++||+|+|++|+++++++.+|++++|||+ +++|++|||+|||+++++++++|+
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~-~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVS-MVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEE-EESCHHHHHHHHTCSSCCSEEEEE
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhCCCCCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999 588999999999999999999985
No 20
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.92 E-value=1.5e-25 Score=153.72 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
......+..+|++|+++|+++.|.+++.++|++|+++|||+|+|++| +++++|+.+|++++|||+ |++|+.+||+|||
T Consensus 6 ~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~-~v~sk~~LG~a~G 84 (126)
T 2xzm_U 6 QQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYV-SVPKRASLGEYLG 84 (126)
T ss_dssp HHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEE-EESCSHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEE-EECCHHHHHHHHC
Confidence 34678899999999999999999999999999999999999999986 899999999999999999 6899999999999
Q ss_pred C-----------cccEEEEEEeCcCch
Q 033719 87 K-----------YFRVSCLSIIDPGDS 102 (112)
Q Consensus 87 k-----------~~~~~vvaI~d~g~a 102 (112)
+ .+++++++|+|+|..
T Consensus 85 ~~k~d~~g~~rk~v~~s~vaI~d~g~~ 111 (126)
T 2xzm_U 85 HFTANAKGEIKKVKGCSSLAIRKYAPE 111 (126)
T ss_dssp CCCBCTTCCBSCCCCCCEEEESSCCTT
T ss_pred CCccccccCcCceeeEEEEEEEecCcc
Confidence 6 555889999999976
No 21
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.90 E-value=2e-24 Score=150.87 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC-chhhhhHHHHHH--hCCCcEEEecCCHHHHHhhhC
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP-PLRKSEIEYYAM--LAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s-~~~~~~i~~~c~--~~~Ip~i~~~~sk~eLG~a~G 86 (112)
....+..+|+.|+++|+++.|.+++.++|++|++++||||+|++ +++.+++..+|+ +++|||+ |++|+.+||+|||
T Consensus 24 ~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i-~V~s~keLG~a~G 102 (143)
T 3u5c_M 24 IEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLI-KVADAKQLGEWAG 102 (143)
T ss_dssp SSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCC-CCSCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEE-EECCHHHHhHHhC
Confidence 44688999999999999999999999999999999999999998 589999999999 9999999 6999999999999
Q ss_pred C--------cc---cEEEEEEeCcCchHHHhcC
Q 033719 87 K--------YF---RVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 87 k--------~~---~~~vvaI~d~g~a~~i~~~ 108 (112)
. ++ .+++++|+|+|++......
T Consensus 103 l~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~~~ 135 (143)
T 3u5c_M 103 LGKIDREGNARKVVGASVVVVKNWGAETDELSM 135 (143)
T ss_dssp CCCCSSSSCCSCCCCCSCEEESCCCCCSHHHHH
T ss_pred cCccccCCCccccceeEEEEEcccchhhHHHHH
Confidence 4 33 3778999999997666544
No 22
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.82 E-value=4.1e-21 Score=129.45 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=72.2
Q ss_pred HHhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 033719 22 MKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 100 (112)
Q Consensus 22 ~kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g 100 (112)
.|...|..|.++|.++|++|+++|||+|+|++| ....+|+.+|++++|||+ |++|+.+||++||++++ ++++|+|.|
T Consensus 21 ~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~-~v~sk~~LG~a~G~k~~-a~vai~d~~ 98 (113)
T 3jyw_G 21 PKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYA-IVKGKARLGTLVNQKTS-AVAALTEVR 98 (113)
T ss_dssp SSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCE-ECSCSTTTHHHHCSSSC-CSEEEECSC
T ss_pred CCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHHCCCCc-EEEEEEeCC
Confidence 355678999999999999999999999999999 467999999999999999 69999999999999965 479999988
Q ss_pred chH
Q 033719 101 DSD 103 (112)
Q Consensus 101 ~a~ 103 (112)
..+
T Consensus 99 ~ed 101 (113)
T 3jyw_G 99 AED 101 (113)
T ss_dssp SST
T ss_pred HHh
Confidence 643
No 23
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=126.89 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=86.1
Q ss_pred hhhhhHHHHHHHHHHHHHhCCceecHHHHHHHH--hcCCceEEEEeCCCC-chh------hhhHHHHHHhCCCcEEEecC
Q 033719 6 KTKKTHESINNRLALVMKSGKYTLGYKTVLRSL--RSSKGKLILLSNNCP-PLR------KSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 6 ~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai--~~gka~lVilA~D~s-~~~------~~~i~~~c~~~~Ip~i~~~~ 76 (112)
++..+...++.+|..|+..++++.|.+++.|+| .+|++.+||+|.|++ |.. ...+..+|++++|||+ |++
T Consensus 15 ~m~~l~~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i-~V~ 93 (165)
T 2kg4_A 15 RMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINIL-RVS 93 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEE-EES
T ss_pred hHHHHHHHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEE-EEC
Confidence 455688999999999999999999999999999 999999999999997 455 5667799999999999 799
Q ss_pred CHHHHHhhhCC--------------cccEEEEEEeCcCch
Q 033719 77 NNVDLGTACGK--------------YFRVSCLSIIDPGDS 102 (112)
Q Consensus 77 sk~eLG~a~Gk--------------~~~~~vvaI~d~g~a 102 (112)
|+.+||+|||. ++.+++++|+|+|..
T Consensus 94 s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~ 133 (165)
T 2kg4_A 94 NPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSS 133 (165)
T ss_dssp CHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSC
T ss_pred CHHHHHHHHCCcccccccccccCCCcccceEEEEeccccc
Confidence 99999999996 355778999999965
No 24
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.78 E-value=2.9e-19 Score=135.12 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=70.7
Q ss_pred HhCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033719 23 KSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 23 kagklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
+.+.++.|.++|+++|++|+++|||||+|++| ..+..+..+|+.++|||+ |++|+.+||.|||++. ++++||+|+|.
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi-~v~sk~eLG~A~Gkk~-~s~VAItD~G~ 209 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLGHLVHRKT-CTTVAFTQVNS 209 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEE-EESCHHHHHHHHTSSC-CSEEEETTCSS
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhCCCC-ceEEEEeecCc
Confidence 45889999999999999999999999999999 567778999999999999 6899999999999995 45799998875
Q ss_pred h
Q 033719 102 S 102 (112)
Q Consensus 102 a 102 (112)
.
T Consensus 210 e 210 (266)
T 2zkr_f 210 E 210 (266)
T ss_dssp T
T ss_pred c
Confidence 4
No 25
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.75 E-value=2.4e-18 Score=129.45 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=68.2
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCchH
Q 033719 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 103 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~a~ 103 (112)
.|..|.++|+++|++|+++|||||+|++|. .+..+..+|++++|||+ |++|+.|||.+||+.. ++++||+|+|..+
T Consensus 131 ~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~-~V~sK~eLG~A~Gkk~-~s~VAItD~g~eD 207 (256)
T 3izc_H 131 AVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYA-IVKGKARLGTLVNQKT-SAVAALTEVRAED 207 (256)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEE-EESCHHHHHHHTTCSS-CCSEEEESSCCSC
T ss_pred hhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhCCCC-cEEEEeecCChhh
Confidence 357899999999999999999999999996 56666999999999999 7999999999999995 4589999999643
No 26
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.69 E-value=8.2e-17 Score=120.87 Aligned_cols=75 Identities=11% Similarity=0.223 Sum_probs=68.0
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCch
Q 033719 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDS 102 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~a 102 (112)
.+..|.++|.++|++|+++|||||+|++|. .+..++.+|++++|||+ |+.|+.+||.+||+..+ ++++|+|.|..
T Consensus 124 ~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~-~V~sK~~LG~avGrKt~-s~Vaitdv~~E 199 (255)
T 4a17_F 124 VLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFA-FVKGKAALGKLVNKKTA-TAVALTEVRNE 199 (255)
T ss_dssp CEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEE-EESCHHHHHHHHTSSCC-SEEEECCCCHH
T ss_pred eeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhCCCcc-eEEEeeccCHH
Confidence 467899999999999999999999999995 57788999999999999 69999999999999864 47999988864
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.55 E-value=2.1e-14 Score=107.71 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHH-----------hCCceecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEecCC
Q 033719 10 THESINNRLALVMK-----------SGKYTLGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 10 ~~~~i~~~Lgla~k-----------agklv~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.+++=-.++..|.+ -..+..|.++|.++|+++++.|||||.|++| +....|+.+|++.||||+ |+.+
T Consensus 100 k~ekk~rL~~~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~-iVk~ 178 (258)
T 3iz5_H 100 KAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYC-IVKG 178 (258)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEE-EESC
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeE-EECC
Confidence 34444555655542 2346789999999999999999999999999 688999999999999999 6999
Q ss_pred HHHHHhhhCCcccEEEEEEeCcCch
Q 033719 78 NVDLGTACGKYFRVSCLSIIDPGDS 102 (112)
Q Consensus 78 k~eLG~a~Gk~~~~~vvaI~d~g~a 102 (112)
+.+||.++|+.. +++++++|.|..
T Consensus 179 KarLG~~vgrKt-ct~Va~t~v~~e 202 (258)
T 3iz5_H 179 KARLGSIVHKKT-ASVLCLTTVKNE 202 (258)
T ss_dssp HHHHHHHTTCSS-CCSEEEEESCCS
T ss_pred HHHHHHHhCCcc-ceEEEEEecCHH
Confidence 999999999996 457999987753
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.42 E-value=1.2e-12 Score=91.12 Aligned_cols=94 Identities=14% Similarity=0.233 Sum_probs=80.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcC--CceEEEEeCCCC-------chhhhhHHHHHHhCCCcEEEecCC
Q 033719 7 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRSS--KGKLILLSNNCP-------PLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 7 ~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~g--ka~lVilA~D~s-------~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
|.....-+-..|..|...+.|+.|..++.+++.++ ++.|.|+|+|++ +...+-+..+|.+++||++. +.+
T Consensus 6 m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIk-Vdd 84 (146)
T 3cg6_A 6 MQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVR-VGD 84 (146)
T ss_dssp CSCHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEE-ECC
T ss_pred hcCHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEE-eCc
Confidence 44466777788999999999999999999999997 999999999998 36678889999999999997 999
Q ss_pred HHHHHhhhCC------cccEEEEEEeCcCc
Q 033719 78 NVDLGTACGK------YFRVSCLSIIDPGD 101 (112)
Q Consensus 78 k~eLG~a~Gk------~~~~~vvaI~d~g~ 101 (112)
.+.||.++|+ ++.++++.|+|+|.
T Consensus 85 ~kkLgew~Gk~d~~g~pr~~sCvvV~d~g~ 114 (146)
T 3cg6_A 85 VQRLAAIVGSDEEGGAPGDLHCILISNPNE 114 (146)
T ss_dssp HHHHHHHC----------CCSEEEEECCC-
T ss_pred hhHHHHHhCCcCCCCCCCCCEEEEEecCCc
Confidence 9999999995 44577899999984
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=99.38 E-value=5.4e-12 Score=89.33 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=83.4
Q ss_pred chhhhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhc--CCceEEEEeCCCC--ch-----hhhhHHHHHHhCCCcEEEe
Q 033719 4 SKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRS--SKGKLILLSNNCP--PL-----RKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 4 ~~~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~--gka~lVilA~D~s--~~-----~~~~i~~~c~~~~Ip~i~~ 74 (112)
.++|.....-+-..|..|...+.|+.|..++.|++.+ ..+.|.++|+|++ ++ ..+-+..+|.+++||++.
T Consensus 24 ~~~m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIk- 102 (167)
T 3ffm_A 24 TARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVR- 102 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEE-
T ss_pred hhhhhhHHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEE-
Confidence 4455656677788899999999999999999999987 4899999999985 34 467888999999999997
Q ss_pred cCCHHHHHhhhCC------cccEEEEEEeCcCc
Q 033719 75 NGNNVDLGTACGK------YFRVSCLSIIDPGD 101 (112)
Q Consensus 75 ~~sk~eLG~a~Gk------~~~~~vvaI~d~g~ 101 (112)
+.+...||.++|+ ++.++++.|+|+|.
T Consensus 103 V~d~kkLgew~G~~~~~~k~~~csCVlVtd~ge 135 (167)
T 3ffm_A 103 VGDVQRLAAIVGAGEEAGAPGDLHCILISNPNE 135 (167)
T ss_dssp ESCHHHHHHHHTTSCCSSSCSCCSEEEEECSSS
T ss_pred eCCcchHHHHhCcCCCCCCCCccEEEEECCCCc
Confidence 9999999999994 34588999999985
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=96.46 E-value=0.011 Score=41.40 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch--------------------------------
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-------------------------------- 55 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-------------------------------- 55 (112)
++..++++..| +...|+.++|.++|++|+..|.+..+|+..|....
T Consensus 30 kkli~~f~~~i--~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~ 107 (166)
T 3ir9_A 30 KNAVRDFFKEL--IADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCP 107 (166)
T ss_dssp HHHHHHHHHHH--HTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCT
T ss_pred HHHHHHHHHHH--hhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhccccccccc
Confidence 45666666666 34679999999999999999999999999886422
Q ss_pred -------------hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033719 56 -------------RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 56 -------------~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
....+...++.++..+. ++.+..+-|.-+=+.+.- +.||+-
T Consensus 108 ~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~-ivs~~~eeG~ql~~~fGG-IaaiLR 161 (166)
T 3ir9_A 108 KCGSSLEVTDVTDIVDEFSELADKSNAKVV-FVSTDFDEGSQLMNAFGG-IAAILR 161 (166)
T ss_dssp TTCCBEEEEEEEEHHHHHHHHHHHTTCEEE-EECSCSHHHHHHHHTSTT-EEEEES
T ss_pred ccCccchhhhHHHHHHHHHHHHHhcCCEEE-EECCCChhHHHHHHcCCC-EEEEEe
Confidence 23456667778888888 577777766655222221 466653
No 31
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=95.81 E-value=0.023 Score=42.04 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=54.6
Q ss_pred CceecHHHHHHHHhcC--CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 26 KYTLGYKTVLRSLRSS--KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 26 klv~G~~~v~kai~~g--ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
-++.|.+.|.++++.+ .+.-|+++.+.......++...|+..++|+.. -++++|.+.++....-.++|+..+
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~--v~~~~l~~ls~~~~~qGv~a~~~~ 86 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQL--ANRQYLDEKSDGAVHQGIIARVKP 86 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEE--ECSHHHHHTTTSCCCTTEEEEECC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEEE--eCHHHHHHHhCCCCCcEEEEEEec
Confidence 4789999999999987 47778888876544345677778888999973 577999999986544446777654
No 32
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=95.43 E-value=0.02 Score=38.31 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=55.6
Q ss_pred HHHhCCceecHHHHHHHHhcCCceEEEEeCCC----Cchhhhh---HHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEE
Q 033719 21 VMKSGKYTLGYKTVLRSLRSSKGKLILLSNNC----PPLRKSE---IEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSC 93 (112)
Q Consensus 21 a~kagklv~G~~~v~kai~~gka~lVilA~D~----s~~~~~~---i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~v 93 (112)
+...|+.++|.++|.+|+..|.+..+++..|. .+..+.+ +...++.++..+. ++.+..+-|.-+ +.+.- +
T Consensus 33 ~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~-ivs~~~~~G~qL-~~~gG-I 109 (124)
T 1x52_A 33 QHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVR-IFSSLHVSGEQL-SQLTG-V 109 (124)
T ss_dssp HSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEE-EECSSSHHHHHH-HTTTT-E
T ss_pred hcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEE-EECCCCccHHHH-hcCCC-E
Confidence 34569999999999999999999999999873 1122333 4556677899988 477777777666 44443 6
Q ss_pred EEEeCcC
Q 033719 94 LSIIDPG 100 (112)
Q Consensus 94 vaI~d~g 100 (112)
+||+-..
T Consensus 110 aAiLRy~ 116 (124)
T 1x52_A 110 AAILRFP 116 (124)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 7887543
No 33
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=95.33 E-value=0.044 Score=41.10 Aligned_cols=69 Identities=7% Similarity=-0.029 Sum_probs=50.9
Q ss_pred ceecHHHHHHHHhcC-CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 27 YTLGYKTVLRSLRSS-KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 27 lv~G~~~v~kai~~g-ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
++.|.+.|.++++.| .+.-|+++.+..+. ..+...|...++|+.. -+.++|.+..+...+-.++|+.++
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~~--~~l~~~~~~~~~~v~~--v~~~~l~~ls~~~~~qGv~a~~~~ 105 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPLD--PALLDLCRQREIPVRL--IDVSIVNQLFKAERKAKVFGIARV 105 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCCC--HHHHHHHHHTTCCEEE--ECHHHHTTCC-----CCEEEEEEC
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccCc--HHHHHHHHhcCCcEEE--ECHHHHHHhhCCCCCCeEEEEEec
Confidence 789999999999987 57778888877655 5666777888999973 589999999986544456777643
No 34
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=95.18 E-value=0.031 Score=43.25 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC-chhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP-PLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s-~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..++++..|. .++.++|.++|.+|+..|.+..+++..|.- ..-...+...+++++..+. ++.+.-+-|.-+ +.
T Consensus 253 ~l~~f~~~l~----~d~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~~~~L~e~~~~~G~~V~-ivs~~~e~G~qL-~~ 326 (347)
T 2qi2_A 253 IVDEFLVAVK----KDMGVYGRDQTESALQMGALSDLIITDEMFRTEDGRRSLSIAQTVGTRIH-IVSVSNDPGQIV-KK 326 (347)
T ss_dssp HHHHHHHHHH----TTCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHHHHHHHHHHHHHTCEEE-EECTTSHHHHHH-HH
T ss_pred HHHHHHHHHh----cCCEEEcHHHHHHHHHcCCCeEEEEecccccchhHHHHHHHHHHcCCEEE-EECCCCcchHHH-Hh
Confidence 4444444433 339999999999999999999999998864 2125667777888999998 577777777777 44
Q ss_pred ccEEEEEEeCcC
Q 033719 89 FRVSCLSIIDPG 100 (112)
Q Consensus 89 ~~~~vvaI~d~g 100 (112)
..- ++||+-..
T Consensus 327 lGG-IAaiLRy~ 337 (347)
T 2qi2_A 327 FGG-FAGILRYR 337 (347)
T ss_dssp TTS-EEEEECSC
T ss_pred cCC-EEEEEecc
Confidence 443 57887543
No 35
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=95.08 E-value=0.028 Score=38.18 Aligned_cols=57 Identities=5% Similarity=-0.116 Sum_probs=43.2
Q ss_pred ecHHHHHHHHhcCCceEEEEeCC--CC---chhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 29 LGYKTVLRSLRSSKGKLILLSNN--CP---PLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D--~s---~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
-|..++...|++|++.+||...| .. ..-...|+..|-.++|||++-..+-+.+=.++
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~al 122 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIPWL 122 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHHHH
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHHHH
Confidence 47789999999999999999998 32 22347789999999999997333444444443
No 36
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=95.02 E-value=0.044 Score=42.56 Aligned_cols=88 Identities=7% Similarity=-0.025 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch-----hhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL-----RKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~-----~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
++..++++..|.. . |+.++|.++|.+|+..|.+.-++++.|.-.+ ....+...+++++..+. ++.+.-+-|
T Consensus 250 ~~~le~f~~~l~~--d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~-i~S~~~e~G 325 (352)
T 3oby_A 250 AEYIDRLLEGIAK--G-ERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVV-IMSTEFEPG 325 (352)
T ss_dssp HHHHHHHHHHHHH--T-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEE-EECTTSHHH
T ss_pred HHHHHHHHHHHhc--C-CcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEE-EEcCCCcch
Confidence 4466777777753 4 9999999999999999999999999775332 34556667778899888 467765666
Q ss_pred hhhCCcccEEEEEEeCcCc
Q 033719 83 TACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 83 ~a~Gk~~~~~vvaI~d~g~ 101 (112)
.-+ +...- ++||+-...
T Consensus 326 ~qL-~~lGG-IaAiLRy~~ 342 (352)
T 3oby_A 326 KRL-MSLGG-IAALLRFNV 342 (352)
T ss_dssp HHH-HHTTS-EEEEESSCC
T ss_pred hHH-hcCCC-EEEEEecCC
Confidence 655 44433 678875543
No 37
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=94.48 E-value=0.054 Score=37.54 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=42.8
Q ss_pred cHHHHHHHHhcCCceEEEEeCC--C-Cc--hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 30 GYKTVLRSLRSSKGKLILLSNN--C-PP--LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D--~-s~--~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
|..++...|++|++.+||-..| . .+ .-...|+..|-.++||+.+-..+-+.+=.++
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ai 130 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSP 130 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTSG
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHH
Confidence 7889999999999999999998 3 22 2347789999999999997333444444443
No 38
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=94.32 E-value=0.061 Score=38.27 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=43.5
Q ss_pred cHHHHHHHHhcCCceEEEEeCC--C-Cc--hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 30 GYKTVLRSLRSSKGKLILLSNN--C-PP--LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D--~-s~--~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
|..++...|++|++.+||...| . .+ .-...|+..|-.++|||++-..+-+.+=.++
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~ai 146 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSP 146 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHSG
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHH
Confidence 7889999999999999999998 3 22 2357789999999999997344555555554
No 39
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=94.19 E-value=0.094 Score=39.17 Aligned_cols=73 Identities=7% Similarity=0.003 Sum_probs=49.6
Q ss_pred hCC-ceecHHHHHHHHhcC-CceEEEEeCCCCchhhhhHHHHHHhCC-CcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033719 24 SGK-YTLGYKTVLRSLRSS-KGKLILLSNNCPPLRKSEIEYYAMLAK-VGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 24 agk-lv~G~~~v~kai~~g-ka~lVilA~D~s~~~~~~i~~~c~~~~-Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
.|. ++.|.+.|.++++.+ .+.-|+++.+..+.....+...+...+ +|+. .-+.++|.+..+....-.++|+..
T Consensus 26 ~g~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~v~--~v~~~~l~~ls~~~~~qGv~a~~~ 101 (274)
T 1ipa_A 26 QRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALL--EVSEAVLKKLSVRDNPAGLIALAR 101 (274)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEE--EECHHHHHHHCCSSSCCSEEEEEE
T ss_pred cCeEEEEeHHHHHHHHhCCCCeEEEEEEcCcccchHHHHHHHHHhcCCccEE--EeCHHHHHHHhCCCCCCeEEEEEe
Confidence 454 678999999999987 577788887765432334555555667 8986 468999999998654444567654
No 40
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=94.15 E-value=0.066 Score=41.71 Aligned_cols=84 Identities=12% Similarity=0.015 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCch------hhhhHHHHHHhCCCcEEEecCCHHHHHh
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPL------RKSEIEYYAMLAKVGVHHYNGNNVDLGT 83 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~------~~~~i~~~c~~~~Ip~i~~~~sk~eLG~ 83 (112)
..++++..| +...|+.++|.++|.+|+..|.+.-+++..|.... ....+...+++++..+. ++.+.-+-|.
T Consensus 271 lle~f~~~l--~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~-ivs~~~e~G~ 347 (364)
T 3obw_A 271 KMEKAMELL--AKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVI-LVPKESPIYF 347 (364)
T ss_dssp HHHHHHHHH--TTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEE-EECTTSTTHH
T ss_pred HHHHHHHHH--hcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEE-EECCCCCCch
Confidence 444444444 23469999999999999999999999999886431 23445566677888888 4666555555
Q ss_pred hhCCcccEEEEEEeC
Q 033719 84 ACGKYFRVSCLSIID 98 (112)
Q Consensus 84 a~Gk~~~~~vvaI~d 98 (112)
-+ +...- ++||+-
T Consensus 348 qL-~~lGG-IAAiLR 360 (364)
T 3obw_A 348 EL-KNLTG-ILAILR 360 (364)
T ss_dssp HH-HHTTT-EEEEES
T ss_pred hh-hcCCc-EEEEEe
Confidence 44 23222 466664
No 41
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=94.01 E-value=0.15 Score=40.75 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCc---------------------------------
Q 033719 8 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPP--------------------------------- 54 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~--------------------------------- 54 (112)
.+..++++..| +...|+.++|.++|.+|+..|.+.-+++..|..-
T Consensus 289 ~~lle~f~~~l--~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c 366 (441)
T 3e20_C 289 KKLIQRFFDEI--SLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLD 366 (441)
T ss_dssp HHHHHHHHHHH--HTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-------
T ss_pred HHHHHHHHHHH--hcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccC
Confidence 34556666654 3456999999999999999999999999987740
Q ss_pred -------------hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 55 -------------LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 55 -------------~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
+....+...++.++..+. ++.+..+-|.-+=+.+.- ++||+-.
T Consensus 367 ~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~-~vs~~~~eG~ql~~~fgG-IaaiLRy 422 (441)
T 3e20_C 367 KDTGAEMELVSSMLLSEWLAEHYKDYGANLE-FVSDRSQEGMQFVKGFGG-IGAVMRY 422 (441)
T ss_dssp ----------CCEEHHHHHHHHGGGGSCCEE-EECTTSHHHHHHHHTSTT-EEEECSS
T ss_pred cccCccceecchhhHHHHHHHHHHHcCCEEE-EECCCCHHHHHHHHcCCc-EEEEEec
Confidence 112235567778888888 577877777655222222 4677643
No 42
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=93.87 E-value=0.057 Score=41.88 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----chhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP----PLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s----~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
..++++..| +...|+.+.|.++|.+|+..|.+.-+++..|.- ++....+...+++.+..+.. +.+.-+-|.-+
T Consensus 266 lle~f~~~l--~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~i-vs~~~e~G~qL 342 (357)
T 3j15_A 266 LVEKVLENI--ARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVV-VSSEHEGGEKL 342 (357)
T ss_dssp HHHHHHHHH--HHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEE-ECSSSTTHHHH
T ss_pred HHHHHHHHH--hcCCCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEE-ECCCCCcchhh
Confidence 445555554 345699999999999999999999999986642 23445566677788888883 55544444433
Q ss_pred CCcccEEEEEEeC
Q 033719 86 GKYFRVSCLSIID 98 (112)
Q Consensus 86 Gk~~~~~vvaI~d 98 (112)
+... .++||+-
T Consensus 343 -~~lg-GiaAiLR 353 (357)
T 3j15_A 343 -KALG-GLAALLR 353 (357)
T ss_dssp -HHHC-SEEEEES
T ss_pred -hcCC-cEEEEEe
Confidence 2222 2466653
No 43
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=93.58 E-value=0.25 Score=38.77 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----chhhhh---HHHHHHhCCCcEEEecCCHHHH
Q 033719 9 KTHESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP----PLRKSE---IEYYAMLAKVGVHHYNGNNVDL 81 (112)
Q Consensus 9 ~~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s----~~~~~~---i~~~c~~~~Ip~i~~~~sk~eL 81 (112)
+..++++..| +...|+.++|.++|.+|+..|.+.-+++..+.- +..+++ +...+++++..+. ++.+.-+-
T Consensus 276 ~lle~f~~~l--~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~-ivs~~~~~ 352 (390)
T 3mca_B 276 RVLNKFYDVM--NEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVY-IFSSLHES 352 (390)
T ss_dssp HHHHHHHHHH--HHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEE-EECTTSHH
T ss_pred HHHHHHHHHH--hcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHHHHHHHHHHhcCCEEE-EECCCCCc
Confidence 3556666555 345699999999999999999999999997753 123333 4455778888888 46666666
Q ss_pred HhhhCCcccEEEEEEeCcC
Q 033719 82 GTACGKYFRVSCLSIIDPG 100 (112)
Q Consensus 82 G~a~Gk~~~~~vvaI~d~g 100 (112)
|.-+ +...- ++||+-..
T Consensus 353 G~qL-~~lgG-iaAiLRy~ 369 (390)
T 3mca_B 353 GKQL-DLLSG-IAAILTYP 369 (390)
T ss_dssp HHHH-HHTTS-EEEEBSSC
T ss_pred hhhh-hcCCc-EEEEEecc
Confidence 6666 33332 57887543
No 44
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=93.35 E-value=0.16 Score=39.18 Aligned_cols=58 Identities=17% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 22 MKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 22 ~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
+..|+.+.|.++|.+|+..|.+..+++..| .+....+...+...+..+. ++.+..+-|
T Consensus 295 ~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--rd~~~~L~e~a~~~G~~V~-ivs~~~~~g 352 (373)
T 3agk_A 295 KGTGMIVYGEKDVEAALEMGAVKTLLIHES--REDLEEWVEKAKSSGAQVI-VVPESLAEA 352 (373)
T ss_dssp TTCCCEEESHHHHHHHHHTTCEEEEEEETT--CTTHHHHHHHHTTTTCEEE-EECTTSTTH
T ss_pred cCCCcEeeCHHHHHHHHHhCCccEEEEeCC--hhHHHHHHHHHHHcCCEEE-EECCCCccH
Confidence 346999999999999999999999999988 4556667777888899988 466665555
No 45
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=93.01 E-value=0.32 Score=38.00 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=55.4
Q ss_pred HHhCCceecHHHHHHHHhcCCceEEEEeCCCC----chhh---hhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEE
Q 033719 22 MKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP----PLRK---SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCL 94 (112)
Q Consensus 22 ~kagklv~G~~~v~kai~~gka~lVilA~D~s----~~~~---~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vv 94 (112)
...|+.++|.++|.+|+..|.+..+++..|.- +..+ ..+...+++++..+. ++.+..+-|.-+ ....- ++
T Consensus 293 ~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~-ivs~~~e~G~qL-~~lgG-IA 369 (386)
T 2vgn_A 293 KDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKAL-VLSTLHSLGEEL-DQLTG-IA 369 (386)
T ss_dssp TTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEE-EECTTSHHHHHH-HHTTT-EE
T ss_pred cCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEE-EECCCCcchhhH-hccCc-EE
Confidence 44599999999999999999999999999852 1223 344556677899998 577777777666 33332 57
Q ss_pred EEeCcC
Q 033719 95 SIIDPG 100 (112)
Q Consensus 95 aI~d~g 100 (112)
||+-..
T Consensus 370 AiLRy~ 375 (386)
T 2vgn_A 370 CILKYP 375 (386)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 887543
No 46
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=92.28 E-value=0.3 Score=37.75 Aligned_cols=87 Identities=13% Similarity=-0.008 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----chh---hhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP----PLR---KSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s----~~~---~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
..++++..+ +...|+.+.|.++|.+|+..|.+.-++++.|.. +.. ...+...++.++..+. ++.+..+-|
T Consensus 258 ll~~f~~~l--~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~-ivs~~~~~G 334 (358)
T 3agj_B 258 VLEEFLRRI--AKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVI-IIPGDSPAG 334 (358)
T ss_dssp HHHHHHHHH--HHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEE-EECSSSHHH
T ss_pred HHHHHHHHH--hcCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEE-EECCCCcch
Confidence 444444433 345689999999999999999999999987642 123 3445556668899998 477777777
Q ss_pred hhhCCcccEEEEEEeCcCc
Q 033719 83 TACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 83 ~a~Gk~~~~~vvaI~d~g~ 101 (112)
.-+ +...- ++||+-...
T Consensus 335 ~qL-~~~gG-IaAiLRy~i 351 (358)
T 3agj_B 335 ERL-VSFGG-VIALLRYPV 351 (358)
T ss_dssp HHH-GGGTT-EEEEESSCC
T ss_pred hhh-hcCCc-EEEEEeccC
Confidence 656 44332 578875443
No 47
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=90.75 E-value=0.25 Score=33.28 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCCch---hhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPL---RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~---~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+.|++|++.+||-..|-... --..++..|-.++||+++
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 468899999999999999887422 235678899999999996
No 48
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=90.16 E-value=0.82 Score=36.02 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC
Q 033719 10 THESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCP 53 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s 53 (112)
..++++..| ++..|+.+.|.++|.+|+..|.+..+++..|..
T Consensus 286 ll~~f~~~l--~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 286 LIGRYFDEI--SQDTGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp HHHHHHHHH--HSSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred HHHHHHHHh--hcCCCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 444444432 344699999999999999999999999998865
No 49
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=89.72 E-value=1.1 Score=33.44 Aligned_cols=72 Identities=7% Similarity=-0.016 Sum_probs=49.2
Q ss_pred hCC-ceecHHHHHHHHhcCC-ceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc-ccEEEEEEeCc
Q 033719 24 SGK-YTLGYKTVLRSLRSSK-GKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY-FRVSCLSIIDP 99 (112)
Q Consensus 24 agk-lv~G~~~v~kai~~gk-a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~-~~~~vvaI~d~ 99 (112)
.|. ++.|.+.|.++++.|. +.-|+++.+.... ..+..+....++|++ .-+.++|.+..+.. .+-.++|+..+
T Consensus 38 ~g~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~--~~~~~l~~~~~~~v~--~v~~~~l~~ls~~~~~~qGv~a~~~~ 112 (287)
T 1x7o_A 38 AGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELS--KWARELLRTVRTEQI--AMAPDLLMELGEKNEAPPEVVAVVEM 112 (287)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEESSCCCC--HHHHHHHHHSCSEEE--EECHHHHTTSSCSSSCCCSEEEEEEC
T ss_pred cCcEEEEeHHHHHHHHhCCCCeEEEEEecCcccc--hhHHHHHHHcCCcEE--EeCHHHHHHHhCCCCCCCcEEEEEec
Confidence 344 6889999999999875 6778888776432 123333444458886 46899999999876 44445776543
No 50
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=88.41 E-value=3.2 Score=30.94 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 100 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g 100 (112)
..++.++..-|--.+++++++.++...+.+..+|...+..+..-+.|.+|+-+++-.... +++|++.+
T Consensus 132 ~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~--iIGinnr~ 199 (272)
T 3tsm_A 132 PYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSR--LLGVNNRN 199 (272)
T ss_dssp THHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCS--EEEEECBC
T ss_pred HHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCC--EEEECCCC
Confidence 347888888898889999999988888889999999997655448899999998866544 58998655
No 51
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=86.74 E-value=5.1 Score=26.83 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.++.+.+++.....|+|..+.+.+....+..+|.++|+|+-. +.+
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~~~~~~YiklA~~~~i~fTi-V~~ 97 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQYQSYSSYIQMASRYGVPFKI-VSD 97 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCHHHHHHHHHHHHHTTCCEEE-ECC
T ss_pred HHHHHHHhhCCCcEEEEcCCCCHHHHHHHHHHHHHcCCCeEE-ecC
Confidence 456789999999999999999999999999999999999984 766
No 52
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=86.08 E-value=1.6 Score=28.02 Aligned_cols=53 Identities=21% Similarity=0.038 Sum_probs=41.3
Q ss_pred eecHHHHHHHHhcCCceEEEEeCCC-CchhhhhHHHHHHhCCCcEEEecCCHHHH
Q 033719 28 TLGYKTVLRSLRSSKGKLILLSNNC-PPLRKSEIEYYAMLAKVGVHHYNGNNVDL 81 (112)
Q Consensus 28 v~G~~~v~kai~~gka~lVilA~D~-s~~~~~~i~~~c~~~~Ip~i~~~~sk~eL 81 (112)
+.|.+...+.+++..+..||+|-.. ++...+++...|...++++. +.++-.++
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~-~vP~~~~~ 104 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVL-TIPNLDDL 104 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEE-ECCCHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEE-ECCCHHHH
Confidence 4466677788888888899999754 44677888889999999998 47777664
No 53
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=85.66 E-value=2.2 Score=31.83 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=59.8
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033719 26 KYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 26 klv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
.++.-.-|+.++-.-|--.++++++-.++...+.+..+|...+..+..-+.|.+||-+|+.-... ++||.+.++
T Consensus 111 DFiid~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~--iIGINNRnL 184 (258)
T 4a29_A 111 DFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGAR--FIGIMSRDF 184 (258)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCS--EEEECSBCT
T ss_pred cccccHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCc--EEEEeCCCc
Confidence 45667778899888898888899999999888899999999986443338999999999876544 589987654
No 54
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=81.23 E-value=9.2 Score=28.06 Aligned_cols=72 Identities=11% Similarity=-0.045 Sum_probs=56.1
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC-cccEEEEEEeCcCc
Q 033719 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK-YFRVSCLSIIDPGD 101 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk-~~~~~vvaI~d~g~ 101 (112)
++.++ |+.++..-|---++++++-.++...+.+..+|++.|..+..-+.|.+|+-++.-. ... ++||++.+.
T Consensus 110 i~~~~-qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~--iIGinnr~l 182 (251)
T 1i4n_A 110 YIDTV-QVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPK--IIGINTRDL 182 (251)
T ss_dssp CCSTH-HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCS--EEEEECBCT
T ss_pred CCCHH-HHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCC--EEEEeCccc
Confidence 44555 6888888888778888887777788888899999987655458899999999877 544 599988763
No 55
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=79.75 E-value=2.9 Score=25.94 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=40.0
Q ss_pred HHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 36 RSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 36 kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
+......+.++.+..|.++.....+..+.+.+++++-.+.+...++.+.+|... +-.+.|.|+
T Consensus 61 ~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~P~~~lid~ 123 (145)
T 3erw_A 61 DAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIIT-IPTSFLLNE 123 (145)
T ss_dssp HHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCE-ESEEEEECT
T ss_pred HHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCc-cCeEEEEcC
Confidence 333434577788877775566677777777777655433455678888888653 233555554
No 56
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=77.04 E-value=12 Score=23.83 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=35.0
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~---eLG~a~Gk~ 88 (112)
..+.+|.++.|...++...+..+++.+++++..+.++.+ ++.+.+|..
T Consensus 60 ~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 60 PDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 368889999987766777888888988887764334444 577777763
No 57
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=76.79 E-value=9.1 Score=30.50 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=56.7
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 033719 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 101 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~ 101 (112)
++..+ |+.++..-|---++++++-.++...+.+..+|++.+..+..-+.|.+|+-+|+-.... ++||++.+.
T Consensus 117 I~d~~-Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~--iIGinnr~L 188 (452)
T 1pii_A 117 IIDPY-QIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAK--VVGINNRDL 188 (452)
T ss_dssp CCSHH-HHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCS--EEEEESEET
T ss_pred cCCHH-HHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCC--EEEEeCCCC
Confidence 34444 6888888888888888988888788888899999997665458999999998766544 599998764
No 58
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=76.47 E-value=8.4 Score=28.44 Aligned_cols=69 Identities=4% Similarity=-0.110 Sum_probs=51.8
Q ss_pred eecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033719 28 TLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 28 v~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
..-..++..+..-|--.++++..|.++.....+...|..++++++.-+.|.+|+-++.-.. +..++++.
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~G--ad~IGv~~ 190 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAG--AKVIGVNA 190 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT--CSEEEEES
T ss_pred ccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCC--CCEEEECC
Confidence 3344578888888877777778899988888888999999987664478999998776332 33588874
No 59
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=73.46 E-value=15 Score=23.48 Aligned_cols=48 Identities=6% Similarity=0.035 Sum_probs=34.3
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~---eLG~a~Gk~ 88 (112)
..+.+|.++.|-..++...+..+++.++.++..+.++.+ ++.+.+|..
T Consensus 63 ~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 468888888886556677788888888876654345554 677777764
No 60
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=72.27 E-value=9.2 Score=24.55 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+..+.++...+.+|.++.| ....+..+++.+++++..+.+...++.+.+|..
T Consensus 60 ~~~~~~~~~~~~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (163)
T 3gkn_A 60 ALLPEFDKAGAKILGVSRD----SVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVI 111 (163)
T ss_dssp HHHHHHHHTTCEEEEEESS----CHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHCCCEEEEEeCC----CHHHHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence 3444555555888999988 233444555565554432245666899999874
No 61
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=71.32 E-value=5.2 Score=31.22 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
+++.+.+++-+++-|+||+|+++ ....|..+-...+|+++.+..+...+-.++
T Consensus 269 rqIk~~vk~~~lksVFIATDa~~-~~~ELk~~L~~~~v~vv~~~pe~a~ID~~I 321 (362)
T 3zy2_A 269 EQIVEKVGSIGAKSVFVASDKDH-MIDEINEALKPYEIEAHRQEPDDMYTSLAI 321 (362)
T ss_dssp HHHHHHHHHHTCSEEEEEESSCC-CHHHHHHHHGGGTCCEECCSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEecCCHH-HHHHHHHHhhccCceEEEeCCchhHHHHHH
Confidence 34444455557999999999987 567776655556899886444444444433
No 62
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.25 E-value=17 Score=24.15 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchh-hhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLR-KSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~-~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
+++...|++.-+.+|++-+|-++.- +..+..+ +..++.+.+ +.++++.-.-+
T Consensus 16 keivreikrqgvrvvllysdqdekrrrerleef-ekqgvdvrt-vedkedfreni 68 (162)
T 2l82_A 16 KEIVREIKRQGVRVVLLYSDQDEKRRRERLEEF-EKQGVDVRT-VEDKEDFRENI 68 (162)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHH-HTTTCEEEE-CCSHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEEecCchHHHHHHHHHHH-HHcCCceee-eccHHHHHHHH
Confidence 4566778888899999999999854 4555544 566899986 88988776544
No 63
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=68.75 E-value=17 Score=23.39 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=34.2
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.++...+.+|.++.|. ...+..+++.+++++..+.+...++.+.+|..
T Consensus 55 ~~~~~~~~~v~vv~vs~d~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 55 NWDLLKDYDVVVIGVSSDD----INSHKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp THHHHHTTCEEEEEEESCC----HHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred HHHHHHHcCCEEEEEeCCC----HHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 4445554458888888873 34566677777776654455667899999875
No 64
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=66.77 E-value=16 Score=25.18 Aligned_cols=67 Identities=7% Similarity=0.004 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCceEEEEeCCCC----chhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 32 KTVLRSLRSSKGKLILLSNNCP----PLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s----~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
++..+.+....+.+|.+..|-. ++....+..+++.+++++..+.+...++.+.+|.... -..-|.|+
T Consensus 82 ~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~-P~~~liD~ 152 (218)
T 3u5r_E 82 AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACT-PDFFLYDR 152 (218)
T ss_dssp HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEE-SEEEEECT
T ss_pred HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCCC-CeEEEECC
Confidence 3344455444477777777643 2566777777777766554334556789999987532 23445543
No 65
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.57 E-value=22 Score=22.17 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=30.9
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
.+.++.+..|. +....+..+++.+++|+-.+.....++.+.+|....= .+-|.|+
T Consensus 61 ~~~vv~v~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P-~~~lid~ 115 (153)
T 2l5o_A 61 NFQVLAVAQPI--DPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYP-TSVLIGK 115 (153)
T ss_dssp TEEEEEEECTT--SCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSS-EEEEECS
T ss_pred CeEEEEEecCC--CCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCccC-eEEEECC
Confidence 35555555443 3345566667777766543345567888888864222 2445543
No 66
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=64.33 E-value=9.8 Score=24.39 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=33.6
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCH---HHHHhhhCC
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNN---VDLGTACGK 87 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk---~eLG~a~Gk 87 (112)
.+.+|.++.|-..++...+..+++.++.++..+.++. .++.+.+|.
T Consensus 72 ~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv 120 (172)
T 2k6v_A 72 RVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGV 120 (172)
T ss_dssp TEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCe
Confidence 5778888888666677778888888888877545566 467677764
No 67
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=62.12 E-value=20 Score=23.73 Aligned_cols=50 Identities=6% Similarity=-0.018 Sum_probs=30.7
Q ss_pred HHHHhcCCc-eEEEEeCCCCchhhhhHHHHHHhCCCc--EEEecCCHHHHHhhhCCc
Q 033719 35 LRSLRSSKG-KLILLSNNCPPLRKSEIEYYAMLAKVG--VHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 35 ~kai~~gka-~lVilA~D~s~~~~~~i~~~c~~~~Ip--~i~~~~sk~eLG~a~Gk~ 88 (112)
.+.++...+ .+|-++.|.. ..+..+++++++| +-.+.+...+++++.|..
T Consensus 59 ~~~~~~~gv~~vv~Is~d~~----~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 59 AAAIHGKGVDIIACMAVNDS----FVMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHHHHHTTCCEEEEEESSCH----HHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHCCCCEEEEEeCCCH----HHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 344555557 8888888742 2355566666554 321235567899998864
No 68
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=61.11 E-value=25 Score=21.88 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=29.5
Q ss_pred HHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 36 RSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 36 kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+.+....+.++.+..|.+ ....+..+.+.+++++-.+.+...++.+.+|..
T Consensus 55 ~~~~~~~~~~v~v~~d~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (154)
T 3kcm_A 55 AAMAGKPFRMLCVSIDEG--GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT 105 (154)
T ss_dssp HHTTTSSEEEEEEECCTT--HHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred HHhccCCeEEEEEEcCCc--chHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence 333333456666665553 445566666666554443345667788888864
No 69
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=60.54 E-value=14 Score=23.14 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=30.2
Q ss_pred HhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 38 LRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 38 i~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
+....+.++.+..|.++ ..+..+.+.+++++-.+.+...++.+.+|.... -.+-|.|+
T Consensus 55 ~~~~~v~vv~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-P~~~lid~ 112 (151)
T 2f9s_A 55 FKSQGVEIVAVNVGESK---IAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL-PTTFLINP 112 (151)
T ss_dssp HGGGTEEEEEEEESCCH---HHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS-CEEEEECT
T ss_pred hccCCeEEEEEECCCCH---HHHHHHHHHcCCCceEEECCchHHHHhcCCCCC-CeEEEECC
Confidence 33334667777766554 334444555544433223445688888886432 23444443
No 70
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=59.56 E-value=22 Score=23.30 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 43 GKLILLSNNCPP----LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 43 a~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+.+|.+..|... +....+..+++.+++++-.+.+...++.+.+|..
T Consensus 66 ~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 115 (188)
T 2cvb_A 66 VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRAL 115 (188)
T ss_dssp EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCC
T ss_pred eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 666777666432 5566677777776655432235566888888864
No 71
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=58.99 E-value=44 Score=23.76 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=45.3
Q ss_pred eecHHHHHHHH--------hcCCceEEEEeCCCCchhh----------------------------------hhHHHHHH
Q 033719 28 TLGYKTVLRSL--------RSSKGKLILLSNNCPPLRK----------------------------------SEIEYYAM 65 (112)
Q Consensus 28 v~G~~~v~kai--------~~gka~lVilA~D~s~~~~----------------------------------~~i~~~c~ 65 (112)
-.|++.+++++ +. -.+++|+.+|+++... .++.....
T Consensus 83 E~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~l~ 161 (212)
T 2iue_A 83 KGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLA 161 (212)
T ss_dssp BCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHHHH
Confidence 44566777766 34 7799999999987321 22445555
Q ss_pred hCCCcEEEecCCHH------HHHhhhCCcccEEEEEEeCcCchHHH
Q 033719 66 LAKVGVHHYNGNNV------DLGTACGKYFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 66 ~~~Ip~i~~~~sk~------eLG~a~Gk~~~~~vvaI~d~g~a~~i 105 (112)
+.+|+.+ |.-+.. +|...++. +.++++...-+..+
T Consensus 162 ~~~i~~i-favt~~~~~~Y~~l~~~i~~----s~v~~L~~dSsni~ 202 (212)
T 2iue_A 162 ENNIQPI-FVVPSRMVKTYEKLTTFIPK----LTIGELSDDSSNVA 202 (212)
T ss_dssp HHTCEEE-EEEEHHHHHHHHHHHHHSTT----CEEEEESSCCHHHH
T ss_pred hcCCcEE-EEEccchhHHHHHHHHHccc----ceeeeecCCcHHHH
Confidence 6788888 677764 34444443 25777766655544
No 72
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=58.93 E-value=10 Score=28.79 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=27.7
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..-+||.+.|-.+.++..+.++|..+++|++.
T Consensus 208 ~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~ 239 (353)
T 3h5n_A 208 EADIWVVSADHPFNLINWVNKYCVRANQPYIN 239 (353)
T ss_dssp CCSEEEECCCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEecCChHHHHHHHHHHHHHhCCCEEE
Confidence 56789999987766888899999999999994
No 73
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=58.78 E-value=26 Score=22.41 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=23.0
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGV 71 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~ 71 (112)
++.+|.++.|-..++...+..+++.+++++
T Consensus 69 ~~~vv~is~d~~~d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 69 DVRIISFSVDPENDKPKQLKKFAANYPLSF 98 (174)
T ss_dssp CCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred cEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 488888888865556777888888888765
No 74
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=58.57 E-value=29 Score=21.20 Aligned_cols=56 Identities=9% Similarity=0.034 Sum_probs=31.0
Q ss_pred ceEEEEeCCCCch--hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 43 GKLILLSNNCPPL--RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 43 a~lVilA~D~s~~--~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
+.++.+..|..+. ....+..+.+.+++++-.+.....++.+.+|.... -.+.|.|+
T Consensus 62 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-P~~~lid~ 119 (148)
T 2b5x_A 62 LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYV-PAYYVFDK 119 (148)
T ss_dssp SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCS-SEEEEECT
T ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCCC-CEEEEECC
Confidence 6677776665332 44556666666654443223555688888886422 23445543
No 75
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=58.49 E-value=20 Score=23.52 Aligned_cols=52 Identities=6% Similarity=-0.041 Sum_probs=30.4
Q ss_pred HHhcCCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 37 SLRSSKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 37 ai~~gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
......+.+|.+..|... +....+..+++.+++++-.+.+...++.+.+|..
T Consensus 74 ~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 129 (196)
T 2ywi_A 74 DYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAA 129 (196)
T ss_dssp HHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCC
T ss_pred HHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCC
Confidence 333334677777766432 4556666666766554432234556788888864
No 76
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=58.36 E-value=31 Score=21.51 Aligned_cols=55 Identities=7% Similarity=0.010 Sum_probs=37.4
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecC---CHHHHHhhhCCcccEEEEEEeC
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNG---NNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~---sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
.+.++.+..| +.+....+..+++.+++++-.+.+ ...++...+|.... -.+.|.|
T Consensus 60 ~v~~v~v~~d-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~-P~~~lid 117 (154)
T 3ia1_A 60 GVPFYVISRE-PRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQ-PWTFVVD 117 (154)
T ss_dssp CCCEEEEECC-TTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSS-CEEEEEC
T ss_pred CCeEEEEeCC-CcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcc-cEEEEEC
Confidence 5778888887 445677788888888888774343 67888888886422 2344444
No 77
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=57.46 E-value=30 Score=22.02 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=29.9
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+..+.++... .+|.++.|. + ..+..+++.+++++-.+.+...++.+..|..
T Consensus 60 ~~~~~~~~~~-~vv~is~d~-~---~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 110 (159)
T 2a4v_A 60 DNYQELKEYA-AVFGLSADS-V---TSQKKFQSKQNLPYHLLSDPKREFIGLLGAK 110 (159)
T ss_dssp HHHHHHTTTC-EEEEEESCC-H---HHHHHHHHHHTCSSEEEECTTCHHHHHHTCB
T ss_pred HHHHHHHhCC-cEEEEeCCC-H---HHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 3344444333 788888883 2 3345566666654442234556888888864
No 78
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=56.91 E-value=29 Score=22.35 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=37.9
Q ss_pred cee-cHHHH--HHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 27 YTL-GYKTV--LRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 27 lv~-G~~~v--~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
++. |.++- +.++..-.+..+|++.+..|. ..+..+|++++||++....+.-+....+.
T Consensus 56 ~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~--~~i~~~A~~~~ipvl~t~~~T~~~~~~l~ 116 (139)
T 2ioj_A 56 LVTGGDRSDLLLTALEMPNVRCLILTGNLEPV--QLVLTKAEERGVPVILTGHDTLTAVSRLE 116 (139)
T ss_dssp EEEETTCHHHHHHHTTCTTEEEEEEETTCCCC--HHHHHHHHHHTCCEEECSSCHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCC--HHHHHHHHHCCCeEEEECCCHHHHHHHHH
Confidence 455 66542 344431458999999988653 33457888999999975556666665554
No 79
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=56.66 E-value=30 Score=28.93 Aligned_cols=69 Identities=6% Similarity=0.150 Sum_probs=45.8
Q ss_pred ecHHHHHHHH--------hcCCceEEEEeCCCCchh-----------------------------------hhhHHHHHH
Q 033719 29 LGYKTVLRSL--------RSSKGKLILLSNNCPPLR-----------------------------------KSEIEYYAM 65 (112)
Q Consensus 29 ~G~~~v~kai--------~~gka~lVilA~D~s~~~-----------------------------------~~~i~~~c~ 65 (112)
.|++.+++++ +++-.++||+++|+++.. ..++.....
T Consensus 221 ~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~ 300 (690)
T 3fcs_B 221 GGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLS 300 (690)
T ss_dssp CHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHH
Confidence 3688888887 445689999999998651 344555556
Q ss_pred hCCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcCch
Q 033719 66 LAKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPGDS 102 (112)
Q Consensus 66 ~~~Ip~i~~~~sk------~eLG~a~Gk~~~~~vvaI~d~g~a 102 (112)
+++|..| |.-+. ++|...++.. .++++...-+
T Consensus 301 ~~~i~~i-favt~~~~~~y~~l~~~i~~s----~v~~l~~dSs 338 (690)
T 3fcs_B 301 QKNINLI-FAVTENVVNLYQNYSELIPGT----TVGVLSMDSS 338 (690)
T ss_dssp HTTCEEE-EEEEGGGHHHHHHHHHHSTTC----EEEEECTTCT
T ss_pred HcCCeEE-EEEeCCchhhHHHHHhhcCCc----eeeeeccccH
Confidence 7788877 55554 4566666542 4777655433
No 80
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=56.56 E-value=10 Score=27.84 Aligned_cols=22 Identities=5% Similarity=-0.118 Sum_probs=15.8
Q ss_pred CCCchhhhhHHHHHHhCCCcEE
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
+.|+.....+..++++++|+++
T Consensus 195 eps~~~l~~l~~~ik~~~v~~i 216 (282)
T 3mfq_A 195 EVANSDMIETVNLIIDHNIKAI 216 (282)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEE
Confidence 3445666777778888888887
No 81
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=56.42 E-value=42 Score=22.50 Aligned_cols=48 Identities=6% Similarity=-0.015 Sum_probs=32.0
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~---eLG~a~Gk~ 88 (112)
+.+.+|.++.|-..++...+..+++.++.++..+.++.+ ++.+.+|..
T Consensus 77 ~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~ 127 (200)
T 2b7k_A 77 ITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY 127 (200)
T ss_dssp CCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-
T ss_pred CceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcE
Confidence 468888898886555667788888888877653344444 455666653
No 82
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=56.01 E-value=34 Score=21.34 Aligned_cols=54 Identities=6% Similarity=-0.052 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC---HHHHHhhhCCcccEEEEEEeCc
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN---NVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s---k~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
.+.+|.+..|-++ ..+..+.+.+++++..+.+. ..++.+.+|....= ..-+.|+
T Consensus 69 ~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P-~~~lid~ 125 (150)
T 3fw2_A 69 YIGMLGISLDVDK---QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIP-ANILLSS 125 (150)
T ss_dssp SEEEEEEECCSCH---HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSS-EEEEECT
T ss_pred CeEEEEEEcCCCH---HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccC-eEEEECC
Confidence 4777888777553 45666667777776643333 45888888864322 3455554
No 83
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=55.32 E-value=17 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=42.3
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHH
Q 033719 25 GKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL 81 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eL 81 (112)
|--+.|.++..+.+++.++..+|+|--. .....+.+.|.+.+|+-| +.++...|
T Consensus 131 GvpV~~~~dL~~~v~~~~Id~vIIAvPs--~~aq~v~d~lv~~GIk~I-~nFap~~l 184 (212)
T 3keo_A 131 GIPVYGISTINDHLIDSDIETAILTVPS--TEAQEVADILVKAGIKGI-LSFSPVHL 184 (212)
T ss_dssp CCBEEEGGGHHHHC-CCSCCEEEECSCG--GGHHHHHHHHHHHTCCEE-EECSSSCC
T ss_pred CeEEeCHHHHHHHHHHcCCCEEEEecCc--hhHHHHHHHHHHcCCCEE-EEcCCccc
Confidence 4456788899999999999999999733 345678888889999999 78887665
No 84
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=54.86 E-value=3.7 Score=30.02 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=44.2
Q ss_pred hCC-ceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCH-HHHHhhhCCcccEEEEEEeC
Q 033719 24 SGK-YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNN-VDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 24 agk-lv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk-~eLG~a~Gk~~~~~vvaI~d 98 (112)
.|. ++.|.+.|.++++...+.-|+++.+..+. +. ...++|++. -+. ++|.+..+...+-.++|+..
T Consensus 25 ~g~f~veG~~~v~eal~~~~i~~l~~~~~~~~~----l~---~~~~~~v~~--v~~~~~l~~ls~~~~~qGv~a~~~ 92 (257)
T 2i6d_A 25 EQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLRA----VS---TPHDAEVVE--LPESFDFKRISTQTTPQPLMAVFD 92 (257)
T ss_dssp HTEEEEESHHHHHHHGGGSCEEEEEEEHHHHHT----SC---CCTTCEEEE--ECTTCCGGGTCCSSSCCSEEEEEE
T ss_pred cCcEEEEcHHHHHHHHhcCCcCEEEEEcCchHH----HH---HhcCCCEEE--eChHHHHHHHhcCCCCCeEEEEEE
Confidence 454 67899999999988336777777654322 21 145688873 466 88999988654444567654
No 85
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=54.63 E-value=11 Score=27.07 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=26.6
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..-+||-+.| +..++..+..+|..+++|++.
T Consensus 118 ~~DvVi~~~d-~~~~r~~l~~~~~~~~~p~i~ 148 (251)
T 1zud_1 118 RADVVLDCTD-NMATRQEINAACVALNTPLIT 148 (251)
T ss_dssp HCSEEEECCS-SHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEECCC-CHHHHHHHHHHHHHhCCCEEE
Confidence 4789999999 566888899999999999994
No 86
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=53.93 E-value=41 Score=21.65 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCce-EEEEeCCCCchhhhhHHHHHHhCCC--cEEEecCCHHHHHhhhCCc
Q 033719 32 KTVLRSLRSSKGK-LILLSNNCPPLRKSEIEYYAMLAKV--GVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 32 ~~v~kai~~gka~-lVilA~D~s~~~~~~i~~~c~~~~I--p~i~~~~sk~eLG~a~Gk~ 88 (112)
++..+.++...+. +|.++.|.. ..+..+++++++ |+-.+.+...+++++.|..
T Consensus 60 ~~~~~~~~~~~v~~vv~Is~d~~----~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 60 IEKAGELKSKGVTEILCISVNDP----FVMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHHHTTCCCEEEEESSCH----HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHCCCCEEEEEECCCH----HHHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 3444555555677 899988732 345667777777 5542234557899998865
No 87
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=52.92 E-value=15 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.028 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCceEEEEeC--CCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSN--NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~--D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.+.+.++|++.+ +..+...+.|..+|++++++++.
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~ 205 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMV 205 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEE
Confidence 45677777655678888863 22234568899999999999985
No 88
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=52.47 E-value=24 Score=22.15 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCC---chhhhhHHHHHHhCCCcEEEecCCHH-----HHHhhhCCc
Q 033719 41 SKGKLILLSNNCP---PLRKSEIEYYAMLAKVGVHHYNGNNV-----DLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s---~~~~~~i~~~c~~~~Ip~i~~~~sk~-----eLG~a~Gk~ 88 (112)
..+.+|-+..|-. ++....+..+++.+++++-.+.+... ++.+.+|..
T Consensus 61 ~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~ 116 (158)
T 3eyt_A 61 DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMR 116 (158)
T ss_dssp TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCC
T ss_pred CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCC
Confidence 3466666666532 34566777777877765432222222 578888754
No 89
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=52.05 E-value=20 Score=23.77 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
++..+.++...+.+|.++.|..+ .+..+++.+++++..+.+...++.++.|..
T Consensus 75 ~~l~~~~~~~~~~vv~Vs~D~~~----~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 75 NLLLPQFEQINATVLGVSRDSVK----SHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHHHTTTEEEEEEESCCHH----HHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 34455566666888889888533 344555555544432245567899999874
No 90
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=51.80 E-value=28 Score=25.20 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++++.+.++|++.+=.+| ...+.|..+|++++++++.
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 567788887677888887543222 3457788899999999985
No 91
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=51.47 E-value=46 Score=21.49 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC-cccEEEEEEeCcCchHHHhcC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK-YFRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk-~~~~~vvaI~d~g~a~~i~~~ 108 (112)
.+....+...|..+.|+=+.|- +....+...++..++|+.. +-|. |+ .-. +...+++|| -|+..+.+.++
T Consensus 44 ~~~~~~W~~~g~~Kvvlk~~~e--~el~~l~~~a~~~gl~~~~-i~DA---G~-Tei~~gt~Tvlai-gP~~~~~vd~i 114 (121)
T 1wn2_A 44 REWFEAWFREGQKKVVVKVESE--EELFKLKAEAEKLGLPNAL-IRDA---GL-TEIPPGTVTVLAV-GPAPEEIVDKV 114 (121)
T ss_dssp HHHHHHHHHTTCCEEEEEESSH--HHHHHHHHHHHHTTCCEEE-EECT---TC-TTSCTTCEEEEEE-EEEEHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEecCCH--HHHHHHHHHHHHCCCCEEE-EEcC---Cc-cccCCCCEEEEEe-ccCCHHHHHHh
Confidence 3556777788999999988764 4556677778889999753 3222 11 001 223457887 56666666543
No 92
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=50.56 E-value=19 Score=22.77 Aligned_cols=52 Identities=2% Similarity=-0.036 Sum_probs=36.2
Q ss_pred ecHHHHHHHH----hcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033719 29 LGYKTVLRSL----RSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 29 ~G~~~v~kai----~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
...+++.+++ ++....++++..+..+.....+..+-...-.|.+...+++..
T Consensus 36 ~~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i~~~~~~~~~P~IieIPs~~g 91 (102)
T 2i4r_A 36 TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFVSVGGTGG 91 (102)
T ss_dssp CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCSSEEEEEC----
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHHHHHHhCCCccEEEEECCCCC
Confidence 4555555554 345799999999999999988888776667898865666653
No 93
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=50.25 E-value=17 Score=26.79 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..+.+.+..++++++|.|.....- ++.+-+..+||++.
T Consensus 78 ~~~~L~~~g~d~IVIACNTa~~~a--l~~lr~~~~iPvig 115 (274)
T 3uhf_A 78 ALDFFEQFQIDMLIIACNTASAYA--LDALRAKAHFPVYG 115 (274)
T ss_dssp HHHHHTTSCCSEEEECCHHHHHHS--HHHHHHHCSSCEEC
T ss_pred HHHHHHHCCCCEEEEeCCChhHHH--HHHHHHhcCCCEEc
Confidence 445667778999999998865331 34444567899986
No 94
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=50.14 E-value=48 Score=21.24 Aligned_cols=70 Identities=10% Similarity=0.148 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC-HHHHHhhhCCcccEEEEEEeCcCchHHHhcC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN-NVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s-k~eLG~a~Gk~~~~~vvaI~d~g~a~~i~~~ 108 (112)
.+....+...|..+.|+-+.|- +....+...++..++|+..+.+. .-|+ -+...+++|| -|+..+.+..+
T Consensus 40 ~~~~~~W~~~g~~kiVlk~~~e--~~l~~l~~~a~~~gl~~~~v~DAG~Tei-----~~gt~Tvlai-gP~~~~~vd~i 110 (117)
T 1rlk_A 40 RDVFNEWYDEGQRKIVVKVNDL--DEIMEIKRMADSMGIVNEIVQDRGYTQV-----EPGTITCIGL-GPDEEEKLDKI 110 (117)
T ss_dssp HHHHHHHHHTTCCEEEEEESSH--HHHHHHHHHHHHHTCCEEEEECCCSSSS-----SCCCEEEEEE-EEEEHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCH--HHHHHHHHHHHHCCCCEEEEEeCCccCc-----CCCCEEEEEe-CcCCHHHHHHH
Confidence 4556677788999999888764 45566777778889997532222 1111 0223457887 56666666543
No 95
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=50.02 E-value=38 Score=27.40 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCceEEEE-eCCCCch----hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 033719 32 KTVLRSLRSSKGKLILL-SNNCPPL----RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 98 (112)
Q Consensus 32 ~~v~kai~~gka~lVil-A~D~s~~----~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d 98 (112)
+.+.++++.| +.+|-+ -.|.++. ..+.+..+|+.+++|++ ..+..+|..++|-+ .+| ++=.|
T Consensus 29 ~~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~li--IND~~dlA~~~gAd-GVH-Lgq~d 95 (540)
T 3nl6_A 29 GQVEAGLQNG-VTLVQIREKDADTKFFIEEALQIKELCHAHNVPLI--INDRIDVAMAIGAD-GIH-VGQDD 95 (540)
T ss_dssp HHHHHHHHTT-CSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEE--ECSCSHHHHHTTCS-EEE-ECTTS
T ss_pred HHHHHHHHCC-CCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEE--EeCcHHHHHHcCCC-EEE-EChhh
Confidence 4566677767 666655 5666653 34677889999999998 46788999999876 563 54433
No 96
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=49.94 E-value=19 Score=26.38 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCceEEEEeC-CCC-chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSN-NCP-PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~-D~s-~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++.. +.+ ..-.+.|..+|++++++++.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFV 202 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEE
Confidence 46677788776678888843 322 12357888999999999995
No 97
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=48.82 E-value=14 Score=27.40 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=40.2
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhC---CCcEEEecCCHHHHHh-----hhCCcccEEEEEEeCcC----chHHHhc
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLA---KVGVHHYNGNNVDLGT-----ACGKYFRVSCLSIIDPG----DSDIIKS 107 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~---~Ip~i~~~~sk~eLG~-----a~Gk~~~~~vvaI~d~g----~a~~i~~ 107 (112)
.+.+||.|.| .+..-..+-..|+.. ++|+-. +++ -++.. .+-+...+ .+||+..| +|+.|+.
T Consensus 106 ~adlViaat~-d~~~n~~I~~~Ar~~f~~~i~VNv-vd~-pel~~f~~Pa~~~~g~~l-~IaIST~Gksp~lA~~ir~ 179 (274)
T 1kyq_A 106 AWYIIMTCIP-DHPESARIYHLCKERFGKQQLVNV-ADK-PDLCDFYFGANLEIGDRL-QILISTNGLSPRFGALVRD 179 (274)
T ss_dssp CEEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEE-TTC-GGGBSEECCEEEEETTTE-EEEEEESSSCHHHHHHHHH
T ss_pred CeEEEEEcCC-ChHHHHHHHHHHHHhcCCCcEEEE-CCC-cccCeeEeeeEEEeCCCE-EEEEECCCCCcHHHHHHHH
Confidence 5778888888 455667788899998 999974 444 55555 33333215 58887555 4555543
No 98
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=47.77 E-value=27 Score=25.62 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=11.2
Q ss_pred ceEEEEeCCCCchhhhhHHHHHHhCCCcE
Q 033719 43 GKLILLSNNCPPLRKSEIEYYAMLAKVGV 71 (112)
Q Consensus 43 a~lVilA~D~s~~~~~~i~~~c~~~~Ip~ 71 (112)
+-+++++. ++.....+...|-+.++++
T Consensus 65 ~D~viI~t--P~~~~~~~~~ea~~~Gi~~ 91 (288)
T 2nu8_A 65 ATASVIYV--PAPFCKDSILEAIDAGIKL 91 (288)
T ss_dssp CCEEEECC--CGGGHHHHHHHHHHTTCSE
T ss_pred CCEEEEec--CHHHHHHHHHHHHHCCCCE
Confidence 44444443 2233333334444445553
No 99
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=47.45 E-value=59 Score=21.65 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCCC-chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCP-PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s-~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+.|++-+--++++..-+. ....+.+..+++..++|+++
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 45667777776666666655554 35678899999999999997
No 100
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=47.17 E-value=35 Score=24.58 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCceEEEE-eCCC---------Cch----hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccE
Q 033719 32 KTVLRSLRSSKGKLILL-SNNC---------PPL----RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV 91 (112)
Q Consensus 32 ~~v~kai~~gka~lVil-A~D~---------s~~----~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~ 91 (112)
+.+.++++.| +.+|.+ ..|. +++ ..+.+..+|..+++|++ ..+..+|..++|-+ .+
T Consensus 47 ~~~~~al~~G-v~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~li--Ind~~~lA~~~gAd-GV 116 (243)
T 3o63_A 47 QFAEAALAGG-VDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFA--VNDRADIARAAGAD-VL 116 (243)
T ss_dssp HHHHHHHHTT-CSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEE--EESCHHHHHHHTCS-EE
T ss_pred HHHHHHHHCC-CCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEE--EeCHHHHHHHhCCC-EE
Confidence 4455666655 666666 5563 332 23677889999999998 46778999999876 44
No 101
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=46.44 E-value=81 Score=22.83 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=42.8
Q ss_pred CCce---ecHHHHHHHHhc-------CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecC--CHHHHHhhhCCc
Q 033719 25 GKYT---LGYKTVLRSLRS-------SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNG--NNVDLGTACGKY 88 (112)
Q Consensus 25 gklv---~G~~~v~kai~~-------gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~--sk~eLG~a~Gk~ 88 (112)
|++. .|.+..++++.. ..++++|+ .|.++.....+..+++..+ .++.|.+ +.+++...+...
T Consensus 258 G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~-G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~a 331 (439)
T 3fro_A 258 GRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIII-GKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSV 331 (439)
T ss_dssp CCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEE-CCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTC
T ss_pred cccccccccHHHHHHHHHHHHhcccCCCeEEEEE-cCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHC
Confidence 5544 577777777643 35666655 5666666788888888887 6665566 889998877654
No 102
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=46.38 E-value=61 Score=21.42 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=31.3
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC----CC--cEEEecCCHHHHHhhhCCc
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA----KV--GVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~----~I--p~i~~~~sk~eLG~a~Gk~ 88 (112)
+..+.++...+.+|.++.|.. ..+..+++.+ ++ |++ .+...++.+++|..
T Consensus 55 ~~~~~~~~~~v~vv~Is~d~~----~~~~~~~~~~~~~~~~~fp~l--~D~~~~~~~~ygv~ 110 (186)
T 1n8j_A 55 DHYEELQKLGVDVYSVSTDTH----FTHKAWHSSSETIAKIKYAMI--GDPTGALTRNFDNM 110 (186)
T ss_dssp HHHHHHHHTTEEEEEEESSCH----HHHHHHHHHCTTGGGCCSEEE--ECTTSHHHHHTTCE
T ss_pred HHHHHHHHCCCEEEEEECCCH----HHHHHHHHHcCcccCCceeEE--ECCchHHHHHhCCc
Confidence 344445555688888888743 2344566666 55 555 35566788888864
No 103
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=45.76 E-value=54 Score=20.96 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc----ccEEEEEEeCcCchHHHh
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY----FRVSCLSIIDPGDSDIIK 106 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~----~~~~vvaI~d~g~a~~i~ 106 (112)
.+....+...|+.++|+-+.|- +....+...++..++|+..+.+. |+. ...+++|| -|+..+.|.
T Consensus 40 ~~~~~~W~~~g~~KVvlk~~~e--~~l~~l~~~a~~~gl~~~~i~DA--------G~Tqi~~gt~Tvlai-gP~~~~~vd 108 (117)
T 1q7s_A 40 PEMLKQWEYCGQPKVVVKAPDE--ETLIALLAHAKMLGLTVSLIQDA--------GRTQIAPGSQTVLGI-GPGPADLID 108 (117)
T ss_dssp HHHHHHHHHTTCCEEEEEESSH--HHHHHHHHHHHHTTCCEEEEEEC--------SSSSEEEEEEEEEEE-EEEEHHHHH
T ss_pred HHHHHHHHhCCCeeEEEEcCCH--HHHHHHHHHHHHCCCCEEEEEEC--------CCcccCCCCeEEEEe-ccCCHHHHH
Confidence 4456667778998888877764 45666777788899997533332 432 22446777 566666555
Q ss_pred c
Q 033719 107 S 107 (112)
Q Consensus 107 ~ 107 (112)
+
T Consensus 109 ~ 109 (117)
T 1q7s_A 109 K 109 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=45.64 E-value=24 Score=23.08 Aligned_cols=30 Identities=7% Similarity=-0.079 Sum_probs=24.2
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcE
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGV 71 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~ 71 (112)
..+.+|.++.|. .++...+..+++++++++
T Consensus 63 ~~~~vv~is~d~-~d~~~~~~~~~~~~~~~~ 92 (170)
T 3me7_A 63 KDFWVITFTFDP-KDTLEDIKRFQKEYGIDG 92 (170)
T ss_dssp TTBEEEEEECCT-TCCHHHHHHHHHHTTCCS
T ss_pred CceEEEEEECCC-CCCHHHHHHHHHHcCCCC
Confidence 458899999987 678888889999988654
No 105
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=45.51 E-value=53 Score=20.45 Aligned_cols=44 Identities=7% Similarity=-0.221 Sum_probs=24.5
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC---HHHHHhhhCCc
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN---NVDLGTACGKY 88 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s---k~eLG~a~Gk~ 88 (112)
.+.++.+..|.++ ..+..+.+.+++|+..+.+. ..++.+.+|..
T Consensus 62 ~~~vv~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (152)
T 2lrn_A 62 GFTIYGVSTDRRE---EDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV 108 (152)
T ss_dssp TEEEEEEECCSCH---HHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred CeEEEEEEccCCH---HHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence 3666666666443 23444444555544432334 57888888864
No 106
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=45.31 E-value=37 Score=24.78 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=26.9
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..+.+.+..++++++|.+..... -++.+-+..+||++.
T Consensus 59 ~~~~L~~~g~~~IVIACNTa~~~--al~~lr~~~~iPvig 96 (269)
T 3ist_A 59 MTNFLVDRGIKMLVIACNTATAA--ALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHH--HHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCCccHH--HHHHHHHhcCCCEEe
Confidence 44566677899999999886542 134445567899996
No 107
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=45.27 E-value=15 Score=25.27 Aligned_cols=77 Identities=6% Similarity=0.030 Sum_probs=56.3
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCCc--hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc---ccEEEEEEeCc
Q 033719 25 GKYTLGYKTVLRSLRSSKGKLILLSNNCPP--LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY---FRVSCLSIIDP 99 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~s~--~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~---~~~~vvaI~d~ 99 (112)
.+|+.|+ +..+.+.=.+..+|+++|.-. ...+.+...|...++.+. +.|-++.-..+..+ .++ .+-+.+|
T Consensus 14 dRLIHGQ--~~~W~k~~~~~~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~--i~sve~ai~~~~~~~~~~~v-~il~k~p 88 (163)
T 3p3v_A 14 ERLIHGQ--GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIR--FFSIQKVIDIIHKASPAQSI-FIVVKDL 88 (163)
T ss_dssp TTGGGST--HHHHHHHTTCSEEEEECHHHHHCHHHHHHHGGGSCTTSEEE--EECHHHHHHHGGGCCTTCEE-EEEESSH
T ss_pred ccchhhh--hhhhhhhcCCCEEEEEcccccCCHHHHHHHHhhCCCCceEE--EEEHHHHHHHHhccCCCceE-EEEECCH
Confidence 6899999 889999999999999999855 467777778887899987 35666666666432 234 4555577
Q ss_pred CchHHHh
Q 033719 100 GDSDIIK 106 (112)
Q Consensus 100 g~a~~i~ 106 (112)
..+..+-
T Consensus 89 ~d~~~lv 95 (163)
T 3p3v_A 89 QDAKLLV 95 (163)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655553
No 108
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=45.20 E-value=34 Score=24.95 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.+.+.++|++.+=..| ...+.|..+|++++++++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 466777777567888887542222 3368888999999999885
No 109
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=44.71 E-value=43 Score=21.48 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc--------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP--------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~--------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.++.++...++++++..-.++ .....+..+|+++++|++.
T Consensus 92 ~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd 142 (185)
T 3hp4_A 92 LTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMN 142 (185)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEc
Confidence 445666777777888877643332 2235567789999999996
No 110
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=44.47 E-value=31 Score=24.84 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+.+..++++++|.+..... -+..+-+..+||++.
T Consensus 56 ~~~~~L~~~g~d~iviaCNTas~~--~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 56 EMTEHLLDLNIKMLVIACNTATAV--VLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHH--HHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCchhhHH--HHHHHHHhCCCCEEe
Confidence 344556667799999999887631 144444567999996
No 111
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=44.36 E-value=33 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=10.2
Q ss_pred EEEEeCCCCchhhhhHHHHHHhCCC
Q 033719 45 LILLSNNCPPLRKSEIEYYAMLAKV 69 (112)
Q Consensus 45 lVilA~D~s~~~~~~i~~~c~~~~I 69 (112)
+|++++-.++...+++..+|+++++
T Consensus 98 vVi~t~G~~~~~~~~l~~~A~~~gi 122 (294)
T 2yv1_A 98 IVVITEHIPVHDTMEFVNYAEDVGV 122 (294)
T ss_dssp EEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCC
Confidence 3333443333333444444444444
No 112
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=44.22 E-value=44 Score=24.28 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++...+.++|++.+=.+| ...+.|..+|++++++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 466777777657888887532222 2357788899999999885
No 113
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=44.13 E-value=42 Score=23.85 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHHHHHhc--CCceEEEEeCCCCchh----hhhHH----HHHHhCCCcEEEecCCHH
Q 033719 31 YKTVLRSLRS--SKGKLILLSNNCPPLR----KSEIE----YYAMLAKVGVHHYNGNNV 79 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~D~s~~~----~~~i~----~~c~~~~Ip~i~~~~sk~ 79 (112)
.+++++.+.+ .++.+||++.|.-... -..+. .+.+..++|++...|+-+
T Consensus 53 l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 4556777766 7899999999985532 12222 233345899885455544
No 114
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=43.96 E-value=53 Score=19.96 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=30.3
Q ss_pred HHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCC---cEEEecCCHHH--HHhhhCCcccEEEEEEeCc
Q 033719 35 LRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKV---GVHHYNGNNVD--LGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 35 ~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~I---p~i~~~~sk~e--LG~a~Gk~~~~~vvaI~d~ 99 (112)
.+......+.++.+..|.++. .+..+.+.+++ |+. .+...+ +....|.... -.+.|.|+
T Consensus 57 ~~~~~~~~~~~v~v~~d~~~~---~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~i~~~-P~~~lid~ 120 (148)
T 3hcz_A 57 WLKNRAKGIQVYAANIERKDE---EWLKFIRSKKIGGWLNV--RDSKNHTDFKITYDIYAT-PVLYVLDK 120 (148)
T ss_dssp HHHHGGGTEEEEEEECCSSSH---HHHHHHHHHTCTTSEEE--ECTTCCCCHHHHHCCCSS-CEEEEECT
T ss_pred HHHhccCCEEEEEEEecCCHH---HHHHHHHHcCCCCceEE--eccccchhHHHhcCcCCC-CEEEEECC
Confidence 333433346677777775544 44555555554 444 233333 8888875422 23455544
No 115
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=43.94 E-value=33 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCchhhhhHHHHHHhCCCc
Q 033719 43 GKLILLSNNCPPLRKSEIEYYAMLAKVG 70 (112)
Q Consensus 43 a~lVilA~D~s~~~~~~i~~~c~~~~Ip 70 (112)
+-++|++. ++.....+-..|.+.++|
T Consensus 72 ~DvaIi~v--p~~~~~~~v~ea~~~Gi~ 97 (297)
T 2yv2_A 72 INTSIVFV--PAPFAPDAVYEAVDAGIR 97 (297)
T ss_dssp CCEEEECC--CGGGHHHHHHHHHHTTCS
T ss_pred CCEEEEec--CHHHHHHHHHHHHHCCCC
Confidence 45555443 223444444445555666
No 116
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=43.68 E-value=26 Score=26.46 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
..+.+-..+...+|++.+..+. ..+..+|++++||+.....+.-+
T Consensus 75 ~~~~l~~~~iP~IIvtrg~~pp--~elie~A~e~~ipLl~T~~~t~~ 119 (312)
T 1knx_A 75 ILHNLLKLNPPAIILTKSFTDP--TVLLQVNQTYQVPILKTDFFSTE 119 (312)
T ss_dssp THHHHHTTCCSCEEEETTTCCC--HHHHHHGGGTCCCEEEESSCGGG
T ss_pred HHHHHhCCCCCEEEEECCCCCC--HHHHHHHHHcCCEEEEeCccHHH
Confidence 4455556778899999998753 35778999999999864444433
No 117
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=43.59 E-value=44 Score=23.46 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHHhcC--CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS--KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g--ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
...+++++.++ .+.++.+-+|-+. ..+..+|+++|||++.
T Consensus 17 ~~~~l~~l~~~~l~~~I~~Vit~~~~---~~v~~~A~~~gIp~~~ 58 (212)
T 3av3_A 17 FQAIVDAAKRGDLPARVALLVCDRPG---AKVIERAARENVPAFV 58 (212)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEESSTT---CHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCC---cHHHHHHHHcCCCEEE
Confidence 44667777777 3555555555322 2466789999999984
No 118
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=43.34 E-value=29 Score=25.15 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHHhc-CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRS-SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~-gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+.+ ..++++++|.+..... -+..+-+..+||++.
T Consensus 56 ~~~~~L~~~~g~d~iViACNTas~~--~l~~lr~~~~iPVig 95 (272)
T 1zuw_A 56 ELTNYLLENHHIKMLVIACNTATAI--ALDDIQRSVGIPVVG 95 (272)
T ss_dssp HHHHHHHHHSCCSEEEECCHHHHHH--HHHHHHHHCSSCEEE
T ss_pred HHHHHHHhhcCCCEEEEeCchhhHH--HHHHHHHHCCCCEEc
Confidence 34555666 6799999999887632 134444567899995
No 119
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=42.85 E-value=44 Score=22.87 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=36.8
Q ss_pred CCceecHHHH-HHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEE
Q 033719 25 GKYTLGYKTV-LRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 25 gklv~G~~~v-~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++. .+++ .+.|++-+--++++.. +.. +..+.+..+++. +||+++
T Consensus 19 a~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvt 66 (174)
T 1ytl_A 19 ATLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVA 66 (174)
T ss_dssp CEECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEE
T ss_pred ceecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEE
Confidence 44555 6776 8889988888888888 753 567889999999 999996
No 120
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=42.69 E-value=52 Score=23.67 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...++.|++. .+..++.+.+.......++.--..++ .....+..+|++++|+++.|
T Consensus 119 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 189 (276)
T 3f7j_A 119 YKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 189 (276)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhcCCCceeeeeeeccccCCHHHHHHHHHCCCEEEEe
Confidence 356677888888888875 34567777777665554444333444 23467888999999999875
No 121
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=42.58 E-value=20 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.5
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..-+||.|.|. +.++..+..+|...++|++.
T Consensus 121 ~~DvVi~~~d~-~~~~~~l~~~~~~~~~p~i~ 151 (249)
T 1jw9_B 121 EHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVS 151 (249)
T ss_dssp TSSEEEECCSS-HHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEeCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 58899999985 56888899999999999994
No 122
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=42.48 E-value=57 Score=21.99 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=29.6
Q ss_pred HHHHhcCCce-EEEEeCCCCchhhhhHHHHHHhCC----CcEEEecCCHHHHHhhhCCc
Q 033719 35 LRSLRSSKGK-LILLSNNCPPLRKSEIEYYAMLAK----VGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 35 ~kai~~gka~-lVilA~D~s~~~~~~i~~~c~~~~----Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
.+.++...+. +|-++.|-.+ ....++++++ .|++ .+...+++++.|..
T Consensus 84 ~~~~~~~gv~~vv~Is~d~~~----~~~~f~~~~~~~~~fp~l--~D~~~~va~~yGv~ 136 (184)
T 3uma_A 84 RDAILARGVDDIAVVAVNDLH----VMGAWATHSGGMGKIHFL--SDWNAAFTKAIGME 136 (184)
T ss_dssp HHHHHTTTCCEEEEEESSCHH----HHHHHHHHHTCTTTSEEE--ECTTCHHHHHTTCE
T ss_pred HHHHHHcCCCEEEEEECCCHH----HHHHHHHHhCCCCceEEE--EcCchHHHHHcCCc
Confidence 3444544466 8888887432 3445555555 5555 35557899999864
No 123
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=42.32 E-value=38 Score=24.44 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
.+++..++..| +.+++ +|..-..+..+|+.+++|++-=..|-.|+-+|...... .+.+.
T Consensus 96 ~~~a~~Ai~AG-A~fIv-----sP~~~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~Gad--~vK~F 154 (232)
T 4e38_A 96 GEQALAAKEAG-ATFVV-----SPGFNPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLT--TLKFF 154 (232)
T ss_dssp HHHHHHHHHHT-CSEEE-----CSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCC--EEEEC
T ss_pred HHHHHHHHHcC-CCEEE-----eCCCCHHHHHHHHHcCCCEEcCCCCHHHHHHHHHcCCC--EEEEC
Confidence 68888888888 66665 34455667788999999996324588898888754332 35553
No 124
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=42.04 E-value=57 Score=19.80 Aligned_cols=53 Identities=6% Similarity=-0.075 Sum_probs=31.1
Q ss_pred ceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC---HHHHHhhhCCcccEEEEEEeCc
Q 033719 43 GKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN---NVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 43 a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s---k~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
+.++.+..|.++ ..+..+.+.+++++..+.+. ..++...+|....= .+.|.|+
T Consensus 68 ~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P-~~~lid~ 123 (148)
T 3fkf_A 68 FAMLGISLDIDR---EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLP-TNILLSP 123 (148)
T ss_dssp EEEEEEECCSCH---HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSS-EEEEECT
T ss_pred eEEEEEECCCCH---HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcC-EEEEECC
Confidence 667777777654 44555566677666543333 45888888864322 3455544
No 125
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=41.85 E-value=30 Score=26.32 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCce-EEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGK-LILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~-lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+++++....++ +|++++..++....++..+|+++++.++-
T Consensus 93 ~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliG 136 (334)
T 3mwd_B 93 YDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIG 136 (334)
T ss_dssp HHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 35678888744454 55558888887778888899988886663
No 126
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=41.83 E-value=34 Score=25.43 Aligned_cols=45 Identities=2% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchh-hhhHHHHHHhCCCcEEEec
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLR-KSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~-~~~i~~~c~~~~Ip~i~~~ 75 (112)
.+.+.+.+..+++..||.....+... ..-+...|..++||.+.|.
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~ 97 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIH 97 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEee
Confidence 35566667667787777655544333 3447789999999999753
No 127
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=41.57 E-value=38 Score=20.99 Aligned_cols=38 Identities=18% Similarity=0.015 Sum_probs=26.1
Q ss_pred HHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++|++=+ -.|.|++.|... ...|..+|+..+-.+..
T Consensus 43 tkkaL~~l~~Ge~L~Vl~dd~~a--~~dI~~~~~~~G~~v~~ 82 (98)
T 1jdq_A 43 TKRALQNMKPGEILEVWIDYPMS--KERIPETVKKLGHEVLE 82 (98)
T ss_dssp HHHHHHTCCTTCEEEEEESSCTH--HHHHHHHHHHSSCCEEE
T ss_pred HHHHHHhCCCCCEEEEEECCccH--HHHHHHHHHHCCCEEEE
Confidence 455555422 247888888643 77899999998877764
No 128
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=40.98 E-value=39 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 12 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
..-+..|...+++|.+ .+++.+| ..++-|.+.|-++||||+ ..+|
T Consensus 202 ~~Hl~~IN~irr~GSI-------~~aVe~G-------------~l~~GImy~cvk~~VPfV-LAGS 246 (345)
T 3c2q_A 202 KHHIYAINAINDAGNI-------KNAVESG-------------VLKEGIMYQCIKNNIPYV-LAGS 246 (345)
T ss_dssp GHHHHHHHHHHHHSSH-------HHHHHTT-------------SCCSSHHHHHHHTTCCEE-EECC
T ss_pred HHHHHHHHHHHHcCCH-------HHHHHhC-------------CCccchHHHHHhCCCCEE-EEee
Confidence 3456677777887764 4555555 344557777777777777 4655
No 129
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=40.92 E-value=38 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..+.+.+..++++++|.+.....- +..+-+..+||++.
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~--l~~lr~~~~iPvig 103 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVA--WEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHH--HHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHH--HHHHHHhCCCCEEe
Confidence 444556667999999998865321 33444567899996
No 130
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=40.91 E-value=60 Score=20.47 Aligned_cols=52 Identities=10% Similarity=-0.062 Sum_probs=35.6
Q ss_pred eecHHHHHHHH----hcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH
Q 033719 28 TLGYKTVLRSL----RSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV 79 (112)
Q Consensus 28 v~G~~~v~kai----~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~ 79 (112)
+...+++.+++ ++....+|++..+..+.....+..+-.....|.+.-.+++.
T Consensus 28 v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~~~P~Il~IPs~~ 83 (109)
T 2d00_A 28 ASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLK 83 (109)
T ss_dssp CSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTCCCCCEEEEESCGG
T ss_pred eCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhCCCCeEEEEECCCc
Confidence 33445554444 34578899999999988888887775556688875456655
No 131
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=40.72 E-value=39 Score=24.73 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=26.7
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+.+..++++++|.+..... -++.+-+..+||++.
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas~~--~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTATAV--ALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHH--HHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCcchhHH--HHHHHHHhCCCCEEc
Confidence 344556666799999999886422 244444567899996
No 132
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=40.67 E-value=52 Score=23.13 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.++++++++. +.++.+-+|-+.. ....+|++++||++.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~---~~~~~A~~~gIp~~~ 55 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADA---FGLERARQAGIATHT 55 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTC---HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCch---HHHHHHHHcCCcEEE
Confidence 455677777774 4455444443221 246789999999984
No 133
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=40.59 E-value=41 Score=20.99 Aligned_cols=47 Identities=4% Similarity=-0.128 Sum_probs=25.6
Q ss_pred CceEEEEeCCCC---chhhhhHHHHHHhCCCcEEEecCCHHH------HHhhhCCc
Q 033719 42 KGKLILLSNNCP---PLRKSEIEYYAMLAKVGVHHYNGNNVD------LGTACGKY 88 (112)
Q Consensus 42 ka~lVilA~D~s---~~~~~~i~~~c~~~~Ip~i~~~~sk~e------LG~a~Gk~ 88 (112)
.+.+|.+..|.. ++....+..+++.+++++-.+.+...+ +.+.+|..
T Consensus 64 ~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~ 119 (160)
T 3lor_A 64 QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLE 119 (160)
T ss_dssp TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCC
T ss_pred CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccC
Confidence 366666666522 235566666777766544322233333 77777754
No 134
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=40.38 E-value=76 Score=21.93 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=29.1
Q ss_pred HHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC-------C--CcEEEecCCHHHHHhhhCC
Q 033719 35 LRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA-------K--VGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 35 ~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~-------~--Ip~i~~~~sk~eLG~a~Gk 87 (112)
.+.++...+.+|.++.|..+ .+..+++.+ + .|++ .+...++.++.|.
T Consensus 83 ~~~~~~~~v~vv~Is~D~~~----~~~~~~~~~~~~~g~~~~~fp~l--~D~~~~~~~~ygv 138 (221)
T 2c0d_A 83 IKDFENKNVELLGISVDSVY----SHLAWKNMPIEKGGIGNVEFTLV--SDINKDISKNYNV 138 (221)
T ss_dssp HHHHHHTTEEEEEEESSCHH----HHHHHHHSCGGGTCCCSCSSEEE--ECTTSHHHHHTTC
T ss_pred HHHHHHCCCEEEEEeCCCHH----HHHHHHHHhhhhcCccCCceEEE--ECCchHHHHHcCC
Confidence 34444456888888887433 344555555 4 4555 3455688888887
No 135
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=40.23 E-value=21 Score=27.00 Aligned_cols=34 Identities=3% Similarity=-0.085 Sum_probs=27.1
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
...+||.+.| +...+..+..+|..+++|++. .++
T Consensus 125 ~~dvVv~~~d-~~~~r~~ln~~~~~~~ip~i~-~~~ 158 (346)
T 1y8q_A 125 QFDAVCLTCC-SRDVIVKVDQICHKNSIKFFT-GDV 158 (346)
T ss_dssp TCSEEEEESC-CHHHHHHHHHHHHHTTCEEEE-EEE
T ss_pred CCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEE-Eee
Confidence 4678888877 456778899999999999994 543
No 136
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=40.16 E-value=40 Score=25.06 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=31.7
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 30 GYKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
-.+.+.+++...+.++|++.+=-+| ...+.|..+|+++++.++.
T Consensus 182 d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 182 DFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp CHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3567778887677888887543332 3457788899999999984
No 137
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=39.63 E-value=39 Score=21.25 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC--HHHHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN--NVDLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s--k~eLG~a~Gk~ 88 (112)
..+.+|.++.|.. ..+..+++.+++++..+.+. ..++.+.+|..
T Consensus 69 ~~~~vv~is~d~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~ 114 (160)
T 1xvw_A 69 DDSAALAISVGPP----PTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF 114 (160)
T ss_dssp SSEEEEEEESCCH----HHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred CCcEEEEEeCCCH----HHHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence 3477777877732 34455555555444322332 57788888864
No 138
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=39.62 E-value=74 Score=20.40 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC-HHHHHhhhCCcccEEEEEEeCcCchHHHhcC
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN-NVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s-k~eLG~a~Gk~~~~~vvaI~d~g~a~~i~~~ 108 (112)
+....+...|..+.|+-+.|- +....+...++..++|+..+.+. +-|+ . +...+++|| -|+..+.+.++
T Consensus 44 ~~~~~W~~~g~~KiVlk~~~e--~el~~l~~~a~~~gl~~~~i~DAG~Tei--~---~gs~Tvlai-gP~~~~~vd~i 113 (120)
T 1xty_A 44 EWLNEWLHQGQPKIIVKVNSL--DEIISRAKKAETMNLPFSIIEDAGKTQL--E---PGTITCLGI-GPAPENLVDSI 113 (120)
T ss_dssp HHHHHHHHTTCCEEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCSSSSS--C---TTCEEEEEE-EEEEHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEecCCH--HHHHHHHHHHHHCCCCEEEEEcCCcccc--C---CCCeEEEEe-ccCCHHHHHHH
Confidence 445566678999999988763 45666777888899997532222 1111 0 223446887 56666665543
No 139
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=39.39 E-value=29 Score=25.34 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.+.+.++|++..=.+| .-.+.|..+|++++++++.
T Consensus 125 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 125 PEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIV 171 (416)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 467777887556788887753222 2257899999999999985
No 140
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=39.29 E-value=66 Score=19.76 Aligned_cols=44 Identities=2% Similarity=-0.092 Sum_probs=24.5
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
.+.+|.+..|.++ ..+..+.+.+++++..+.+...++.+.+|..
T Consensus 61 ~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 104 (152)
T 3gl3_A 61 GFQVVAVNLDAKT---GDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK 104 (152)
T ss_dssp TEEEEEEECCSSH---HHHHHHHHHSCCCSEEEECTTCHHHHHTTCC
T ss_pred CeEEEEEECCCCH---HHHHHHHHHcCCCCceeECCcchhHHHcCCC
Confidence 3666666666543 3344444555544443345556788888754
No 141
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=39.27 E-value=65 Score=23.77 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+..+..|...++.|++. ....++.+.+.......++.--..++ .....+..+|++++|.++.|
T Consensus 153 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 223 (310)
T 3b3e_A 153 YKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 223 (310)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcceEeecCCCHHHHHHHHHhcCCCcceeeeeccCccCCHHHHHHHHHcCCEEEEe
Confidence 356677888888888864 24567777777666554444444444 23367888999999999875
No 142
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=39.26 E-value=44 Score=24.50 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHhCCCc
Q 033719 55 LRKSEIEYYAMLAKVG 70 (112)
Q Consensus 55 ~~~~~i~~~c~~~~Ip 70 (112)
.....+...|.+.++|
T Consensus 75 ~~~~~~~~ea~~~Gi~ 90 (288)
T 1oi7_A 75 PAAADAALEAAHAGIP 90 (288)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHCCCC
Confidence 3333344444444555
No 143
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=38.73 E-value=60 Score=24.10 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+..+..|...+++|++. ....++.+.+.......++.--..++ .....+..+|++++|+++.|
T Consensus 156 ~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 226 (335)
T 3h7u_A 156 IPSTWKAMEALYDSGKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQTKLQEFCKSKGVHLSAY 226 (335)
T ss_dssp HHHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCCHHHHHHHHHCCCEEEEe
Confidence 467888999999999974 34567777777666555554444444 22367889999999999976
No 144
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=38.67 E-value=72 Score=20.59 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=29.1
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCCch--------hhhhHHHHHHhCCCcEEE
Q 033719 30 GYKTVLRSLRSSKGKLILLSNNCPPL--------RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s~~--------~~~~i~~~c~~~~Ip~i~ 73 (112)
..+++++.++...++++++..-.++. ....+..+|++++++++.
T Consensus 87 ~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD 138 (190)
T 1ivn_A 87 TLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLP 138 (190)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEc
Confidence 35566777776567877775433332 234567789999999996
No 145
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=38.58 E-value=41 Score=23.80 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHhcC------CceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEEecCC
Q 033719 31 YKTVLRSLRSS------KGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 31 ~~~v~kai~~g------ka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.+.+.++++.. +.++|++..- +| ...+.|..+|++++++++. ...
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~-De~ 185 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFL-DGA 185 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEE-Ecc
Confidence 56677777765 4788888643 32 2267788999999999984 443
No 146
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=38.45 E-value=59 Score=22.33 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 37 SLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 37 ai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+..+.++++|.+.. .. +..+.+..+||++.
T Consensus 70 ~l~~~g~d~iviaCnta-~~---~~~l~~~~~iPvi~ 102 (228)
T 2eq5_A 70 EFEREGVDAIIISCAAD-PA---VEKVRKLLSIPVIG 102 (228)
T ss_dssp HHHHTTCSEEEECSTTC-TT---HHHHHHHCSSCEEE
T ss_pred HHHHCCCCEEEEeCCch-HH---HHHHHHhCCCCEeC
Confidence 44556799999999887 33 34444566899985
No 147
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=38.42 E-value=24 Score=25.26 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=32.7
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhh-C---CcccEEEEEEeCcCch
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC-G---KYFRVSCLSIIDPGDS 102 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~-G---k~~~~~vvaI~d~g~a 102 (112)
.+.+||.|+|.++ .-..+...|+ .+||+-. +++ -+++... + ..-++ .+||...|-+
T Consensus 91 ~adLVIaAT~d~~-~N~~I~~~ak-~gi~VNv-vD~-p~~~~f~~Paiv~rg~l-~iaIST~G~s 150 (223)
T 3dfz_A 91 NVFFIVVATNDQA-VNKFVKQHIK-NDQLVNM-ASS-FSDGNIQIPAQFSRGRL-SLAISTDGAS 150 (223)
T ss_dssp SCSEEEECCCCTH-HHHHHHHHSC-TTCEEEC-------CCSEECCEEEEETTE-EEEEECTTSC
T ss_pred CCCEEEECCCCHH-HHHHHHHHHh-CCCEEEE-eCC-cccCeEEEeeEEEeCCE-EEEEECCCCC
Confidence 3678888887654 5566777788 8999874 444 4444332 1 11245 5889876643
No 148
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=38.33 E-value=17 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=32.1
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCceecHHHHHHHHhc
Q 033719 1 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRS 40 (112)
Q Consensus 1 ~~~~~~~~~~~~~i~~~Lgla~kagklv~G~~~v~kai~~ 40 (112)
||+++-+=++.+.+...+.--..+|.+.+-.+-+..+|+.
T Consensus 1 mm~~~~sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~ 40 (88)
T 3kxe_C 1 MASKNTSVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRL 40 (88)
T ss_dssp ----CEEECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHH
T ss_pred CCCceeeeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7888888888899999999999999999999988888864
No 149
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=38.19 E-value=62 Score=24.01 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+..+..|...++.|++. ....++.+.+.......++.--..++ .....+..+|++++|+++.|
T Consensus 152 ~~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 222 (331)
T 3h7r_A 152 ITSTWKAMEALYDSGKARAIGVSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQQGLHELCKSKGVHLSGY 222 (331)
T ss_dssp HHHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEecCCCHHHHHHHHHhcCCCceeEEeecccccCCHHHHHHHHHCCCEEEEe
Confidence 467888999999999874 34667777777666555554444554 22367889999999999876
No 150
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=37.99 E-value=77 Score=20.40 Aligned_cols=41 Identities=2% Similarity=-0.036 Sum_probs=24.9
Q ss_pred eEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 44 KLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 44 ~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.+|.+..|- +....+..+++++++++..+.+...++...+|
T Consensus 100 ~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 140 (183)
T 3lwa_A 100 TVLGINVRD--YSRDIAQDFVTDNGLDYPSIYDPPFMTAASLG 140 (183)
T ss_dssp EEEEEECSC--CCHHHHHHHHHHTTCCSCEEECTTCGGGGGTT
T ss_pred EEEEEECCC--CCHHHHHHHHHHcCCCccEEECCcchHHHHhc
Confidence 666666664 23455666667776654433456667777775
No 151
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=37.95 E-value=56 Score=21.61 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=26.7
Q ss_pred HHHHHHhcCCceEEEEeCCCCchh--hh---hHHHHHHhCCCcEEEecCCH
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLR--KS---EIEYYAMLAKVGVHHYNGNN 78 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~--~~---~i~~~c~~~~Ip~i~~~~sk 78 (112)
++.+.+.+.++-+||++.|..... .. .+.......++|++...|+-
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNH 73 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQ 73 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTT
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCC
Confidence 344445545788999999986543 12 23233334578887434543
No 152
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=37.91 E-value=29 Score=28.01 Aligned_cols=34 Identities=3% Similarity=-0.010 Sum_probs=27.6
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
...+||.+.| +..++..+..+|..+++|++. .++
T Consensus 124 ~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~-~~~ 157 (531)
T 1tt5_A 124 RFTVVVATQL-PESTSLRLADVLWNSQIPLLI-CRT 157 (531)
T ss_dssp GCSEEEEESC-CHHHHHHHHHHHHHTTCCEEE-EEE
T ss_pred CCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEE-EEe
Confidence 4678888877 566888999999999999994 544
No 153
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=37.87 E-value=35 Score=24.96 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+.+..++++++|.+..... -+..+-+..+||++.
T Consensus 75 ~~~~~L~~~g~d~IVIaCNTas~~--~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 75 EIARKLMEFDIKMLVIACNTATAV--ALEYLQKTLSISVIG 113 (286)
T ss_dssp HHHHHHTTSCCSEEEECCHHHHHH--HHHHHHHHCSSEEEE
T ss_pred HHHHHHHHCCCCEEEEeCCchhHH--HHHHHHHhCCCCEEe
Confidence 345566667799999999887632 133444567899995
No 154
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=37.78 E-value=34 Score=24.90 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCceEEEEe-CCCCch-hhhhHHHHHHhCCCcEEEecCC
Q 033719 31 YKTVLRSLRSSKGKLILLS-NNCPPL-RKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA-~D~s~~-~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.+.+.+++...+.++|++. ...+.. -.+.|..+|++++++++. ...
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~-Dea 199 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV-DMA 199 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEE-Ecc
Confidence 4567777765456777773 333322 368889999999999984 443
No 155
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=37.65 E-value=52 Score=23.91 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCC-------chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCP-------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s-------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.. +.++|++..=.+ +...+.|..+|++++++++.
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 4567777766 566666643222 23368888999999999984
No 156
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=37.55 E-value=64 Score=22.94 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=25.4
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..+.+.+..+.++++|.+..... -++.+-+..+||++.
T Consensus 54 ~~~~L~~~g~d~iviaCNTa~~~--~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 54 ALDFFKPHEIELLIVACNTASAL--ALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHHGGGCCSCEEECCHHHHHH--THHHHHHHCSSCEEC
T ss_pred HHHHHHHCCCCEEEEeCchhhHH--HHHHHHHhCCCCEEe
Confidence 33445556699999999887631 234444567999985
No 157
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=37.54 E-value=83 Score=21.40 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=30.0
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC---------CCcEEEecCCHHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA---------KVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~---------~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.++...+.+|.++.|..+ .+..+++.+ +.|++ .+...++.+++|..
T Consensus 78 l~~~~~~~~v~vv~Is~D~~~----~~~~~~~~~~~~~g~~~~~fp~l--~D~~~~~~~~ygv~ 135 (213)
T 2i81_A 78 ALDAFHERNVELLGCSVDSKY----THLAWKKTPLAKGGIGNIKHTLL--SDITKSISKDYNVL 135 (213)
T ss_dssp THHHHHHTTEEEEEEESSCHH----HHHHHHSSCGGGTCCCSCSSEEE--ECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEeCCCHH----HHHHHHHHHHhhCCccCCCceEE--ECCchHHHHHhCCc
Confidence 344455456888888888322 344455544 45555 34567899999875
No 158
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=37.28 E-value=29 Score=25.02 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++..--+|. ..+.|..+|++++++++.
T Consensus 137 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 137 LQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLV 183 (393)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEE
Confidence 5677778876567777776543332 257899999999999984
No 159
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=37.28 E-value=51 Score=27.57 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=43.8
Q ss_pred ecHHHHHHHH--------hcCCceEEEEeCCCCchh----------------------------------hhhHHHHHHh
Q 033719 29 LGYKTVLRSL--------RSSKGKLILLSNNCPPLR----------------------------------KSEIEYYAML 66 (112)
Q Consensus 29 ~G~~~v~kai--------~~gka~lVilA~D~s~~~----------------------------------~~~i~~~c~~ 66 (112)
.|++.+++++ ++ -.++||+++|++... ...+...-.+
T Consensus 213 ~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~ 291 (687)
T 3k6s_B 213 GGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAE 291 (687)
T ss_dssp CHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHH
T ss_pred hHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHH
Confidence 3688888887 33 678999999998541 3456565667
Q ss_pred CCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcC
Q 033719 67 AKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPG 100 (112)
Q Consensus 67 ~~Ip~i~~~~sk------~eLG~a~Gk~~~~~vvaI~d~g 100 (112)
++|..| |.-+. ++|...++.. .++++...
T Consensus 292 ~~I~~i-favt~~~~~~y~~l~~~i~~s----~v~~L~~d 326 (687)
T 3k6s_B 292 NNIQPI-FAVTSRMVKTYEKLTEIIPKS----AVGELSED 326 (687)
T ss_dssp TTCBCC-EEECGGGHHHHHHHHHHSSSC----CEEECCTT
T ss_pred cCCeEE-EEEeccchhhHHHHHhhcCCc----eeeeeccc
Confidence 788777 55554 4566677653 36666544
No 160
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=37.26 E-value=30 Score=25.34 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceEEEEeC-CCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSN-NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~-D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.. +.++|++.. ...+.-.+.|..+|++++++++.
T Consensus 118 ~~~l~~~i~~-~~~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~ 160 (390)
T 3b8x_A 118 IESLKEAVTD-STKAILTVNLLGNPNNFDEINKIIGGRDIILLE 160 (390)
T ss_dssp HHHHHHHCCT-TEEEEEEECGGGCCCCHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHhCc-CCeEEEEECCccChhhHHHHHHHHHHcCCEEEE
Confidence 3455666643 577888764 33445578899999999999985
No 161
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.15 E-value=88 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=23.0
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++.+...++.-+|+..... ......+...+||++.
T Consensus 54 ~~~~~l~~~~vdgiIi~~~~~----~~~~~~l~~~~iPvV~ 90 (276)
T 3jy6_A 54 TLLRAIGSRGFDGLILQSFSN----PQTVQEILHQQMPVVS 90 (276)
T ss_dssp HHHHHHHTTTCSEEEEESSCC----HHHHHHHHTTSSCEEE
T ss_pred HHHHHHHhCCCCEEEEecCCc----HHHHHHHHHCCCCEEE
Confidence 456666667776666655433 3344455677899984
No 162
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=36.95 E-value=57 Score=23.83 Aligned_cols=23 Identities=4% Similarity=-0.112 Sum_probs=18.6
Q ss_pred CCCCchhhhhHHHHHHhCCCcEE
Q 033719 50 NNCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 50 ~D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
++.|+.....+..++++.+|+++
T Consensus 219 ~eps~~~l~~l~~~ik~~~v~~I 241 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKENNLTMV 241 (291)
T ss_dssp BCCCHHHHHHHHHHHHTTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE
Confidence 45566777888888999999998
No 163
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=36.84 E-value=65 Score=20.79 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCC---cEEEecCCHHHHHhhhCC
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKV---GVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~I---p~i~~~~sk~eLG~a~Gk 87 (112)
+..+.+....+.+|.+..|.+ ....+..+++.+++ |++ .+...++.+.+|.
T Consensus 84 ~l~~~~~~~~~~vv~v~~d~~--~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~ 137 (186)
T 1jfu_A 84 ELQGKLSGPNFEVVAINIDTR--DPEKPKTFLKEANLTRLGYF--NDQKAKVFQDLKA 137 (186)
T ss_dssp HHHHHHCBTTEEEEEEECCCS--CTTHHHHHHHHTTCCTTCCE--ECTTCHHHHHHHT
T ss_pred HHHHHhccCCcEEEEEECCCC--CHHHHHHHHHHcCCCCCceE--ECCcchHHHHhcc
Confidence 334444445677888887753 23345556666654 555 3444667777664
No 164
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=36.70 E-value=59 Score=23.42 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=22.4
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEe
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~ 74 (112)
-.+.|..=+--|||.....++...+++ ++.+||++.+
T Consensus 76 n~E~i~~l~PDlIi~~~~~~~~~~~~L----~~~Gipvv~~ 112 (326)
T 3psh_A 76 NIESLLALKPDVVFVTNYAPSEMIKQI----SDVNIPVVAI 112 (326)
T ss_dssp CHHHHHHTCCSEEEEETTCCHHHHHHH----HTTTCCEEEE
T ss_pred CHHHHHccCCCEEEEeCCCChHHHHHH----HHcCCCEEEE
Confidence 345555566778887655433333333 4678999953
No 165
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=36.58 E-value=36 Score=24.79 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc--hhhhhHHHHHHhCCCcEEEecCC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP--LRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~--~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.+.+.+++...+.++|++.+-..+ .-.+.|..+|++++++++. ...
T Consensus 152 ~~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~-Dea 199 (407)
T 2dkj_A 152 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVV-DMA 199 (407)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEE-Ecc
Confidence 456777776546788888422222 2357888999999999984 444
No 166
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=36.21 E-value=98 Score=24.70 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=48.8
Q ss_pred eecHHHHHHHHh-------cCCceEEEEeCCCCchh----------------------------------hhhHHHHHHh
Q 033719 28 TLGYKTVLRSLR-------SSKGKLILLSNNCPPLR----------------------------------KSEIEYYAML 66 (112)
Q Consensus 28 v~G~~~v~kai~-------~gka~lVilA~D~s~~~----------------------------------~~~i~~~c~~ 66 (112)
-.|++..++++. ++.-+++|+++|+++.. ..+|.+...+
T Consensus 229 Egg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e 308 (454)
T 3vi3_B 229 EGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSE 308 (454)
T ss_dssp BCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHH
T ss_pred chhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHh
Confidence 346888887762 12678999999998642 3455666667
Q ss_pred CCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcCchHHH
Q 033719 67 AKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 67 ~~Ip~i~~~~sk------~eLG~a~Gk~~~~~vvaI~d~g~a~~i 105 (112)
+||..| |.-|+ ++|...++. +.++++...-+.++
T Consensus 309 ~nI~~I-FAVt~~~~~~Y~~L~~~ip~----s~vg~Ls~dSsNiv 348 (454)
T 3vi3_B 309 NNIQTI-FAVTEEFQPVYKELKNLIPK----SAVGTLSANSSNVI 348 (454)
T ss_dssp TTEEEE-EEEEGGGHHHHHHHHHHSTT----EEEEEECTTCTTHH
T ss_pred cCCcEE-EEEcCccchHHHHHHHhCCC----ceeeEccccchhHH
Confidence 888887 55554 567777765 25888866554444
No 167
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=36.17 E-value=1.2e+02 Score=22.04 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...++.|++. ....++.+.+.......++.=-..++ .....+..+|++++|.++.|
T Consensus 136 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 206 (298)
T 3up8_A 136 MAERIGALNEVRNAGKVRHIGISNFNTTQMEEAARLSDAPIATNQVEYHPYLDQTKVLQTARRLGMSLTSY 206 (298)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCEEEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEEcCCCHHHHHHHHHhCCCCceEEEEecccccccHHHHHHHHHCCCEEEEE
Confidence 356777888888998864 24567777777665566665555554 23467889999999999875
No 168
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=35.79 E-value=1.1e+02 Score=21.92 Aligned_cols=64 Identities=8% Similarity=0.060 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...++.|++. .+..++.+.+.......++.=-..++ .....+..+|++++|+++.|
T Consensus 131 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 201 (288)
T 4f40_A 131 YLDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCTVTPMVNQVELHPLNNQADLRAFCDAKQIKVEAW 201 (288)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTTCSSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhCCCCCeEEeccCccccCCHHHHHHHHHCCCEEEEe
Confidence 356677888888888864 24566777766555444433333333 22356888999999999875
No 169
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=35.77 E-value=92 Score=20.39 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=29.3
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC-------C--CcEEEecCCHHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA-------K--VGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~-------~--Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.++...+.+|.++.|.. ..+..+++.+ + .|++ .+...++.+..|..
T Consensus 57 ~~~~~~~~~v~vv~Is~d~~----~~~~~~~~~~~~~~~~~~~~~~~l--~D~~~~~~~~~gv~ 114 (192)
T 2h01_A 57 ALDSFKERNVELLGCSVDSK----FTHLAWKKTPLSQGGIGNIKHTLI--SDISKSIARSYDVL 114 (192)
T ss_dssp THHHHHHTTEEEEEEESSCH----HHHHHHHTSCGGGTCCCSCSSEEE--ECTTSHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEEeCCH----HHHHHHHHhHHhhCCccCCCcCeE--ECCcHHHHHHhCCc
Confidence 34444445578888888742 2344455544 3 4554 34557899999875
No 170
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=35.39 E-value=73 Score=23.99 Aligned_cols=52 Identities=6% Similarity=-0.005 Sum_probs=34.2
Q ss_pred CceEEEEeCC-CCchhhhhHHHHHHhCCCcEEEecCCHHHHHhh-hCCcccEEEEEEeC
Q 033719 42 KGKLILLSNN-CPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTA-CGKYFRVSCLSIID 98 (112)
Q Consensus 42 ka~lVilA~D-~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a-~Gk~~~~~vvaI~d 98 (112)
++-++|+-.+ -|.|++ +|.+.|++.+.|.+ +..+-+||-.. +. .. ..+||+-
T Consensus 209 ~~D~miVVGg~nSSNT~-rL~eia~~~~~~ty-~Ie~~~el~~~wl~-~~--~~VGITA 262 (297)
T 3dnf_A 209 EVDVMIIIGGKNSGNTR-RLYYISKELNPNTY-HIETAEELQPEWFR-GV--KRVGISA 262 (297)
T ss_dssp GSSEEEEESCTTCHHHH-HHHHHHHHHCSSEE-EESSGGGCCGGGGT-TC--SEEEEEE
T ss_pred hCCEEEEECCCCCchhH-HHHHHHHhcCCCEE-EeCChHHCCHHHhC-CC--CEEEEee
Confidence 4655555544 445555 57789999999998 59999998653 42 21 2477764
No 171
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=35.39 E-value=42 Score=25.17 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=29.7
Q ss_pred HHHHHHHhc---CCceEEEEeCCCC--------chhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRS---SKGKLILLSNNCP--------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~---gka~lVilA~D~s--------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.+.++|.. ++.++|++..=.+ .+..+.|..+|++++++++.
T Consensus 170 ~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~ 222 (467)
T 1ax4_A 170 KKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM 222 (467)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEE
Confidence 566667764 3678888854222 23457889999999999995
No 172
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=35.36 E-value=80 Score=21.52 Aligned_cols=25 Identities=4% Similarity=0.076 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL 55 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~ 55 (112)
.+++++.++..++-+||++.|....
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~~ 45 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILKN 45 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCc
Confidence 4556666766789999999998764
No 173
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=35.34 E-value=74 Score=20.56 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred eecHHHHHHHHhcCCceEEEEeCC-CCc-----------hhhhhHHHHHHhCCCcEEE
Q 033719 28 TLGYKTVLRSLRSSKGKLILLSNN-CPP-----------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 28 v~G~~~v~kai~~gka~lVilA~D-~s~-----------~~~~~i~~~c~~~~Ip~i~ 73 (112)
....++.++.+++..+++|++..- .++ ...+.+...|+++++|++.
T Consensus 116 ~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD 173 (216)
T 3rjt_A 116 RDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVD 173 (216)
T ss_dssp HHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 344566777777777888888521 111 1235566678999999985
No 174
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=35.30 E-value=67 Score=21.93 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=33.0
Q ss_pred cHHHHHHHHhcCCc-eEEEEeCCCCchhhhhHHHHHHhCC----CcEEEecCCHHHHHhhhCC
Q 033719 30 GYKTVLRSLRSSKG-KLILLSNNCPPLRKSEIEYYAMLAK----VGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 30 G~~~v~kai~~gka-~lVilA~D~s~~~~~~i~~~c~~~~----Ip~i~~~~sk~eLG~a~Gk 87 (112)
++.+..+.++...+ .++-++.|... . ...+|+.++ +|+. .+...+++++.|.
T Consensus 70 ~f~~~~~ef~~~g~d~VigIS~D~~~-~---~~~f~~~~~l~~~f~lL--sD~~~~va~ayGv 126 (176)
T 4f82_A 70 GYVEHAEQLRAAGIDEIWCVSVNDAF-V---MGAWGRDLHTAGKVRMM--ADGSAAFTHALGL 126 (176)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSCHH-H---HHHHHHHTTCTTTSEEE--ECTTCHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCHH-H---HHHHHHHhCCCCCceEE--EcCchHHHHHhCC
Confidence 34555666766667 88999998533 2 344555554 5565 3455688888875
No 175
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=35.21 E-value=1.3e+02 Score=24.18 Aligned_cols=89 Identities=7% Similarity=0.162 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCc---eecHHHHHHHH--------hcCCceEEEEeCCCCchh------------------------
Q 033719 12 ESINNRLALVMKSGKY---TLGYKTVLRSL--------RSSKGKLILLSNNCPPLR------------------------ 56 (112)
Q Consensus 12 ~~i~~~Lgla~kagkl---v~G~~~v~kai--------~~gka~lVilA~D~s~~~------------------------ 56 (112)
..+.+.++-.+=+|++ --|++.+++++ +.+-.+++|+++|+++..
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~ 280 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH 280 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCB
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCc
Confidence 4445555544444553 45788888887 334578999999998531
Q ss_pred -----------hhhHHHHHHhCCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcCchHHH
Q 033719 57 -----------KSEIEYYAMLAKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPGDSDII 105 (112)
Q Consensus 57 -----------~~~i~~~c~~~~Ip~i~~~~sk------~eLG~a~Gk~~~~~vvaI~d~g~a~~i 105 (112)
...+.+...++||..| |.-|. ++|...+.. +.++++...-+.++
T Consensus 281 Y~~s~~~DYPSv~ql~~~l~e~nI~~I-FAVt~~~~~~Y~~L~~~ip~----s~vg~L~~dSsNiv 341 (472)
T 3t3p_B 281 YSASTTMDYPSLGLMTEKLSQKNINLI-FAVTENVVNLYQNYSELIPG----TTVGVLSMDSSNVL 341 (472)
T ss_dssp BTTTTTSCCCCHHHHHHHHHHTTCEEE-EEECGGGHHHHHHHHHTSTT----CEEEECCTTSTTHH
T ss_pred ccccccCCCCCHHHHHHHHHhcCccEE-EEEeccchhHHHHHHHhCCC----ceeeeccccchhHH
Confidence 2334445556788777 56555 456666643 25777766544443
No 176
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=35.11 E-value=74 Score=22.13 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhh-------hh---HHHHHHhCCCcEEEecCCHH
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRK-------SE---IEYYAMLAKVGVHHYNGNNV 79 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~-------~~---i~~~c~~~~Ip~i~~~~sk~ 79 (112)
+++++.+.+.+..+||++.|...... .. +.......++|++...|+-+
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD 98 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHE 98 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCC
Confidence 34455555678999999999976432 22 33333446899985344433
No 177
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=35.01 E-value=96 Score=22.66 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEec
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~ 75 (112)
.+.....|...++.|++. ....++.+.+.......++.=...++- ....+..+|++++|.++.|.
T Consensus 147 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 218 (322)
T 1mi3_A 147 ILETWKALEKLVAAGKIKSIGVSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQPKLIEFAQKAGVTITAYS 218 (322)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCcCEEEEcCCCHHHHHHHHHhCCCCceEeecccCcCcCcHHHHHHHHHcCCEEEEEC
Confidence 467888899999999874 356777788776655444443344442 23578889999999998753
No 178
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=34.99 E-value=55 Score=22.19 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=20.4
Q ss_pred hhHHHHHHhCCCcEEEecCCHHHHHhh
Q 033719 58 SEIEYYAMLAKVGVHHYNGNNVDLGTA 84 (112)
Q Consensus 58 ~~i~~~c~~~~Ip~i~~~~sk~eLG~a 84 (112)
.-|..+|+.+++|+.. ++.+||...
T Consensus 54 ~gL~e~A~~lgvPl~~--~~~eeL~~v 78 (155)
T 3by5_A 54 AGLAEAAKGLSLSLEI--VAQERLEAV 78 (155)
T ss_dssp HHHHHHHHHTTCCEEE--CCHHHHHHH
T ss_pred HHHHHHHHHhCCCeEE--ECHHHHhhc
Confidence 4578899999999983 788888764
No 179
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=34.84 E-value=73 Score=22.88 Aligned_cols=30 Identities=3% Similarity=-0.115 Sum_probs=19.1
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+-+||=.+ +|........+|.++++|++.
T Consensus 45 ~~DvvIDfT--~p~a~~~~~~~a~~~g~~~Vi 74 (245)
T 1p9l_A 45 NTEVVIDFT--HPDVVMGNLEFLIDNGIHAVV 74 (245)
T ss_dssp TCCEEEECS--CTTTHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEcc--ChHHHHHHHHHHHHcCCCEEE
Confidence 466666555 344455566677788888873
No 180
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=34.81 E-value=70 Score=23.54 Aligned_cols=43 Identities=21% Similarity=0.041 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.++++..+.++|++..=..| ...+.|..+|+++++.++.
T Consensus 171 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 171 REKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 355667775677888877432222 2367788899999999985
No 181
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=34.80 E-value=30 Score=24.80 Aligned_cols=43 Identities=14% Similarity=-0.043 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++..=.+|. -.+.|..+|++++++++.
T Consensus 116 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 116 PGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVV 162 (384)
T ss_dssp HHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEE
Confidence 5677888877668888887533331 257788999999999985
No 182
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=34.74 E-value=1.1e+02 Score=22.37 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+..+..|...++.|++. ....++.+.+.......++.=...++ .....+..+|++++|.++.|
T Consensus 131 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 201 (317)
T 1qwk_A 131 VEDVWRQFDAVYKAGLAKAVGVSNWNNDQISRALALGLTPVHNSQVELHLYFPQHDHVDFCKKHNISVTSY 201 (317)
T ss_dssp HHHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHTTCSSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCccceecceeccccCcHHHHHHHHHcCCEEEEe
Confidence 456788888889998863 34567777777665544444434444 22357889999999999875
No 183
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=34.72 E-value=49 Score=23.82 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.++++. .++|++.+=.+| ...+.+..+|++++++++.
T Consensus 155 ~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 155 YEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp HHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4667777766 777777543333 3467788899999999985
No 184
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=34.69 E-value=62 Score=23.41 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=29.8
Q ss_pred cHHHHHHHHhc--CCceEEEEeCC-------CCchhhhhHHHHHHhCCCcEEE
Q 033719 30 GYKTVLRSLRS--SKGKLILLSNN-------CPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~--gka~lVilA~D-------~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
-.+++.+++++ .+..++++.+= .++...+.+..+|+++++.++.
T Consensus 159 d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 211 (397)
T 3fsl_A 159 RFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp CHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEE
Confidence 34667777764 45677776522 2334456888899999999885
No 185
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=34.52 E-value=76 Score=19.09 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=13.3
Q ss_pred eEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 44 KLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 44 ~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++|.+.+.=|...+ ...+-++++|||..
T Consensus 5 ~I~vYs~~~Cp~C~~-aK~~L~~~gi~y~~ 33 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLR-LKTALTANRIAYDE 33 (92)
T ss_dssp CEEEEECTTCSSHHH-HHHHHHHTTCCCEE
T ss_pred cEEEEcCCCCHhHHH-HHHHHHhcCCceEE
Confidence 344444444443332 22333456677654
No 186
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=34.28 E-value=27 Score=21.32 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=19.9
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 56 RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 56 ~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
.-.+|...+++++||+++ . ..|.+++
T Consensus 28 ~A~~I~~~A~e~~VPi~e-~---~~LAr~L 53 (83)
T 3bzy_B 28 KALQIIKLAELYDIPVIE-D---IPLARSL 53 (83)
T ss_dssp HHHHHHHHHHHTTCCEEE-C---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEe-C---HHHHHHH
Confidence 557899999999999996 2 4555555
No 187
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=34.22 E-value=99 Score=20.32 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=28.6
Q ss_pred HHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC------CCcEEEecCCHHHHHhhhCCc
Q 033719 35 LRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA------KVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 35 ~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~------~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
.+.+....+.+|.++.|..+ .+..+++.+ +.|++ .+...++.+.+|..
T Consensus 72 ~~~~~~~~v~vv~Vs~d~~~----~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~ 125 (195)
T 2bmx_A 72 NDEFEDRDAQILGVSIDSEF----AHFQWRAQHNDLKTLPFPML--SDIKRELSQAAGVL 125 (195)
T ss_dssp HHHHHTTTEEEEEEESSCHH----HHHHHHHHCTTGGGCCSCEE--ECTTSHHHHHHTCB
T ss_pred HHHHHHCCCEEEEEECCCHH----HHHHHHHHhccccCCceeEE--eCCchHHHHHhCCc
Confidence 34444446788888877522 344444443 45655 34557888888875
No 188
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=34.22 E-value=40 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc--hhhhhHHHHHHhCCCcEEEecC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP--LRKSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~--~~~~~i~~~c~~~~Ip~i~~~~ 76 (112)
.+.+.++++..+.++|++..-..+ .-.+.|..+|+++++.++. ..
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~-De 220 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLV-DM 220 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEE-EC
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEE-EC
Confidence 466777776666778888433323 2458889999999999984 44
No 189
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=34.17 E-value=47 Score=26.95 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=28.7
Q ss_pred ecHHHHHHHHhc-C-CceEEEEeC-CC----CchhhhhHHHHHHhCCCcEEE
Q 033719 29 LGYKTVLRSLRS-S-KGKLILLSN-NC----PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 29 ~G~~~v~kai~~-g-ka~lVilA~-D~----s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.-.+.+.++|++ + ++.++|+.+ .+ ..+-.+.+..+|.+++||++.
T Consensus 200 id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllV 251 (501)
T 3hl2_A 200 TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIV 251 (501)
T ss_dssp ECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEE
Confidence 345677888866 3 444444332 22 224567788899999999985
No 190
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=34.13 E-value=1.1e+02 Score=22.39 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCce--EEEEeCCCCch-hhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGK--LILLSNNCPPL-RKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~--lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~ 74 (112)
.......|...++.|++. ....++.+.+...... .++.-...++- ....+..+|++++|.++.|
T Consensus 147 ~~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 219 (326)
T 3buv_A 147 LCATWEAMEACKDAGLVKSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYFTQPKLLKFCQQHDIVITAY 219 (326)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEEeCCCHHHHHHHHHhCCCCCCCeeeeeecccccCcHHHHHHHHHcCCEEEEe
Confidence 467788888899999873 3456777777766655 44444444442 2357889999999999875
No 191
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=33.90 E-value=1.2e+02 Score=21.25 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=24.7
Q ss_pred HHHHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..++++++.+. +.++.+-+|-+... -..+|++++||++.
T Consensus 22 ~all~~~~~~~l~~~I~~Visn~~~a~---~l~~A~~~gIp~~~ 62 (209)
T 4ds3_A 22 EALIRAAQAPGFPAEIVAVFSDKAEAG---GLAKAEAAGIATQV 62 (209)
T ss_dssp HHHHHHHTSTTCSEEEEEEEESCTTCT---HHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCCcEEEEEEECCcccH---HHHHHHHcCCCEEE
Confidence 34566666665 56666666532211 24689999999985
No 192
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=33.75 E-value=42 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCceEEEEeC-CC-CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSN-NC-PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~-D~-s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.+.+.++|++.. +. .....+.|..+|++++++++.
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~ 197 (417)
T 3n0l_A 153 YEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFA 197 (417)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEE
Confidence 46677777755677777643 22 122367899999999999984
No 193
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=33.71 E-value=42 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++..=.+|. -.+.+..+|++++++++.
T Consensus 113 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 113 PEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFL 159 (353)
T ss_dssp HHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEE
Confidence 4667777766467777776543332 247888999999999884
No 194
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=33.40 E-value=49 Score=23.96 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=26.6
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+.+..++++++|.+..... -++.+-+..+||++.
T Consensus 60 ~~~~~L~~~g~d~IViACNTas~~--~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 60 EMVEFLKQFPLKALVVACNTAAAA--TLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHHTTSCEEEEEECCHHHHHH--HHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCcHHHH--HHHHHHHHCCCCEEe
Confidence 445556666799999999876421 144444567899995
No 195
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=33.35 E-value=76 Score=22.59 Aligned_cols=43 Identities=9% Similarity=-0.010 Sum_probs=29.7
Q ss_pred HHHHHHHHhc----CCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS----SKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~----gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++.+ .+.++|++..=.+|. ..+.|..+|++++++++.
T Consensus 132 ~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 132 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLV 182 (371)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEE
Confidence 3556666753 567787776543332 247888999999999985
No 196
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=33.29 E-value=65 Score=20.43 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCC-cEEEecC-CHHHHHhhhCCcc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKV-GVHHYNG-NNVDLGTACGKYF 89 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~I-p~i~~~~-sk~eLG~a~Gk~~ 89 (112)
..+.+|.++.|..+ .+..+++++++ ++-.+.+ ...++.+.+|...
T Consensus 75 ~~~~vv~is~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~ 121 (167)
T 2jsy_A 75 GDVNVYTISADLPF----AQARWCGANGIDKVETLSDHRDMSFGEAFGVYI 121 (167)
T ss_dssp SSCEEEEEECSSGG----GTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred CCCEEEEEECCCHH----HHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence 45778888877432 23334555655 4432223 3467888888653
No 197
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=33.27 E-value=76 Score=19.55 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=34.1
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 30 GYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
+..++...+ ..+-+||++.+.... .+++...|..+++|++. -+....|
T Consensus 41 ~~~~~~~~~--~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~--I~~~~y~ 88 (109)
T 2l2q_A 41 AETRLSEVV--DRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEI--INTIDYG 88 (109)
T ss_dssp CSTTHHHHT--TTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEE--CCHHHHH
T ss_pred cHHHHHhhc--CCCCEEEECCccHHH-HHHHHHHhcccCCCEEE--EChHHhc
Confidence 445555443 468899999999775 67788888888999984 4444444
No 198
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=33.04 E-value=43 Score=25.58 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=27.0
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..-+||.+.|-.+ ++..+..+|..+++|++.
T Consensus 139 ~~DlVvd~tDn~~-tR~lin~~c~~~~~plI~ 169 (340)
T 3rui_A 139 EHDIIFLLVDSRE-SRWLPSLLSNIENKTVIN 169 (340)
T ss_dssp HCSEEEECCSSTG-GGHHHHHHHHHTTCEEEE
T ss_pred cCCEEEecCCCHH-HHHHHHHHHHHcCCcEEE
Confidence 4789999999765 788899999999999994
No 199
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=33.00 E-value=1e+02 Score=23.03 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~ 74 (112)
...++..|...++.|++. ....++.+.+........+.-...++- ....+..+|++++|.++.|
T Consensus 168 ~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~i~p~v~Q~e~~~~~~~~~ll~~~~~~gI~v~a~ 238 (344)
T 2bgs_A 168 MEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAY 238 (344)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEEecCCHHHHHHHHHhcCCCceeeecccCcccCcHHHHHHHHHCCCEEEEe
Confidence 467888888899999874 355677777776655444444444442 2357888999999999865
No 200
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=32.97 E-value=80 Score=23.73 Aligned_cols=51 Identities=8% Similarity=-0.038 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCC--------CchhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 31 YKTVLRSLRSSKGKLILLSNNC--------PPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~--------s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
.+.+.++++..+.++||+-..- ++...+.|..+|++++++++. ......+|
T Consensus 201 ~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~-DEv~~g~g 259 (433)
T 1z7d_A 201 LEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA-DEVQTGLG 259 (433)
T ss_dssp HHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE-ECTTTTTT
T ss_pred HHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE-ecCccCCC
Confidence 4556667755667777765332 223568899999999999994 44433343
No 201
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=32.85 E-value=47 Score=25.10 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCc
Q 033719 25 GKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVG 70 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip 70 (112)
+...-|..+.++.+++....++|+.++.+.........+.+..++|
T Consensus 28 ~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~ 73 (352)
T 3kc2_A 28 KKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD 73 (352)
T ss_dssp TEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC
T ss_pred CeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC
Confidence 3456788889999998889999999887654444444444445565
No 202
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=32.59 E-value=86 Score=22.16 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+++++.|. +.++.+-+|-+. ..+..+|+++|||+..
T Consensus 17 ~ali~~~~~~~l~~eI~~Visn~~~---a~v~~~A~~~gIp~~~ 57 (211)
T 3p9x_A 17 EAIIQSQKAGQLPCEVALLITDKPG---AKVVERVKVHEIPVCA 57 (211)
T ss_dssp HHHHHHHHTTCCSSEEEEEEESCSS---SHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHcCCCCcEEEEEEECCCC---cHHHHHHHHcCCCEEE
Confidence 34455555664 456655556332 2477889999999974
No 203
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=32.46 E-value=49 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCceEEEEeCC
Q 033719 31 YKTVLRSLRSSKGKLILLSNN 51 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D 51 (112)
.+++.+.+++.++-+||+|.|
T Consensus 50 l~~lv~~~~~~~~D~vliaGD 70 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHTCSEEEEESC
T ss_pred HHHHHHHHHHhCCCEEEECCc
Confidence 345556666678999999999
No 204
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=32.23 E-value=66 Score=23.14 Aligned_cols=70 Identities=9% Similarity=-0.116 Sum_probs=49.9
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
++.-..++..+..-|--.+++.+.+.+ ...+.+...+..+++.+...+.+.+|+-++.--... .++|...
T Consensus 114 fI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad--~IGvn~~ 183 (254)
T 1vc4_A 114 FVVDPFMLEEARAFGASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAE--VLGINNR 183 (254)
T ss_dssp CCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCS--EEEEESB
T ss_pred cCCCHHHHHHHHHcCCCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCC--EEEEccc
Confidence 334455788888889888888888887 677777777888888765447788998877643322 4677543
No 205
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=32.07 E-value=1.2e+02 Score=22.33 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 10 THESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
..+.....|...++.|++. ....++.+.+...+...++.--..++ .....+..+|++++|+++.|
T Consensus 153 ~~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~c~~~gI~v~ay 224 (334)
T 3krb_A 153 PLADTWRAMEQLVEEGLVKHIGVSNYTVPLLADLLNYAKIKPLVNQIEIHPWHPNDATVKFCLDNGIGVTAY 224 (334)
T ss_dssp CHHHHHHHHHHHHHHTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCccEEEEecCCHHHHHHHHHhCCCceEEeeeecCcccccHHHHHHHHHcCCEEEEE
Confidence 3567888999999999874 24567777777666554444434444 23467889999999999875
No 206
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=32.06 E-value=73 Score=23.87 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchh------hhhHHHHHH---hCCCcEEEecCCHH
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLR------KSEIEYYAM---LAKVGVHHYNGNNV 79 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~------~~~i~~~c~---~~~Ip~i~~~~sk~ 79 (112)
.+++.+.+...++-+||+|.|.-... ...+..... ..++|++...|+-+
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~GNHD 106 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCCGGG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcCCCC
Confidence 34566667778899999999974322 122222222 24799875455544
No 207
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=32.03 E-value=20 Score=31.17 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=41.4
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCCch--hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 29 LGYKTVLRSLRSSKGKLILLSNNCPPL--RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~s~~--~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
.|..++++.|++|++.+||-..+.... ---.++..|-+++||+++-..+-..+-.++
T Consensus 996 ~g~p~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~t~~~~~~~~~~~~ 1054 (1073)
T 1a9x_A 996 EGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMAL 1054 (1073)
T ss_dssp TCSSBHHHHHHHTCCSEEEECCCSHHHHHHTHHHHHHHHHTTCEEESSHHHHHHHHHHH
T ss_pred CCCccHHHHHHcCCeEEEEECCCCcccccchHHHHHHHHHhCCCEEccHHHHHHHHHHH
Confidence 467789999999999999987766221 224677889999999997444555555555
No 208
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=31.91 E-value=67 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=18.5
Q ss_pred CCCchhhhhHHHHHHhCCCcEEEecC
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i~~~~ 76 (112)
+.|+.....+..++++++|+++ |..
T Consensus 211 eps~~~l~~l~~~ik~~~v~~i-f~e 235 (286)
T 3gi1_A 211 EPSPRQLKEIQDFVKEYNVKTI-FAE 235 (286)
T ss_dssp -CCHHHHHHHHHHHHHTTCCEE-EEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-EEe
Confidence 4555677888888899999998 443
No 209
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=31.80 E-value=58 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=26.7
Q ss_pred HHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+.+..+.++++|.+.... ....+ -+..+||++.
T Consensus 53 ~~~~~L~~~g~d~iviaCnTa~~~~~~~l---r~~~~iPvig 91 (254)
T 1b73_A 53 ECAGFLKDKGVDIIVVACNTASAYALERL---KKEINVPVFG 91 (254)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHTTSHHHH---HHHSSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHH---HHhCCCCEEe
Confidence 34556667779999999988652 34444 4556899996
No 210
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=31.60 E-value=82 Score=20.93 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=28.4
Q ss_pred HHHHhcCCceEE-EEeCCCCchhhhhHHHHHHhCC----CcEEEecCCHHHHHhhhCCc
Q 033719 35 LRSLRSSKGKLI-LLSNNCPPLRKSEIEYYAMLAK----VGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 35 ~kai~~gka~lV-ilA~D~s~~~~~~i~~~c~~~~----Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
.+.++...+.+| +++.|..+ ....+++.++ .|++ .+...+++++.|..
T Consensus 71 ~~~~~~~gv~vv~~iS~D~~~----~~~~f~~~~~~~~~fp~l--~D~~~~va~~yGv~ 123 (173)
T 3mng_A 71 AEALKAKGVQVVACLSVNDAF----VTGEWGRAHKAEGKVRLL--ADPTGAFGKETDLL 123 (173)
T ss_dssp HHHHHTTTCCEEEEEESSCHH----HHHHHHHHTTCTTTCEEE--ECTTCHHHHHHTCB
T ss_pred HHHHHhCCCEEEEEEcCCCHH----HHHHHHHHhCCCCceEEE--ECCChHHHHHhCCC
Confidence 344454557777 48887432 3445556655 5555 34556888888753
No 211
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=31.35 E-value=1.1e+02 Score=20.83 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=30.2
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC---------CCcEEEecCCHHHHHhhhCC
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA---------KVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~---------~Ip~i~~~~sk~eLG~a~Gk 87 (112)
+..+.++...+.+|.++.|..+ .+..+++.+ +.|++ .+...++.+++|.
T Consensus 73 ~l~~~~~~~~v~vv~Is~D~~~----~~~~~~~~~~~~~g~~~~~fp~l--~D~~~~~~~~ygv 130 (211)
T 2pn8_A 73 DRLEEFRSINTEVVACSVDSQF----THLAWINTPRRQGGLGPIRIPLL--SDLTHQISKDYGV 130 (211)
T ss_dssp HTHHHHHTTTEEEEEEESSCHH----HHHHHHTSCGGGTCCCSCSSCEE--ECTTSHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEEECCCHH----HHHHHHHHhhhccCccCCceEEE--ECCchHHHHHcCC
Confidence 3344455556888888887433 344455544 45665 3445688899887
No 212
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=31.04 E-value=77 Score=19.91 Aligned_cols=46 Identities=9% Similarity=-0.094 Sum_probs=28.5
Q ss_pred CceEEEEeCCC---------------CchhhhhHHHHHHhCCC-cEEEecCCHHHHHhhhCCc
Q 033719 42 KGKLILLSNNC---------------PPLRKSEIEYYAMLAKV-GVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 42 ka~lVilA~D~---------------s~~~~~~i~~~c~~~~I-p~i~~~~sk~eLG~a~Gk~ 88 (112)
.+.+|.+..|. ++.....+..+.+.+++ ++-.+.+ ..++.+.+|..
T Consensus 68 ~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~ 129 (165)
T 3ha9_A 68 EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVR 129 (165)
T ss_dssp TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCC
T ss_pred CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCC
Confidence 57777777772 11455666666777655 3332233 67899988854
No 213
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=31.00 E-value=72 Score=22.74 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++..=.+|. -.+.|..+|++++++++.
T Consensus 160 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 206 (397)
T 3f9t_A 160 EKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHV 206 (397)
T ss_dssp HHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEE
Confidence 4667777776355555555433332 247788999999999984
No 214
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=30.93 E-value=82 Score=18.33 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=23.3
Q ss_pred eEEEEeCCCCchhh-----hhHHHHHHhCCCcEEEecCC-----HHHHHhhhC
Q 033719 44 KLILLSNNCPPLRK-----SEIEYYAMLAKVGVHHYNGN-----NVDLGTACG 86 (112)
Q Consensus 44 ~lVilA~D~s~~~~-----~~i~~~c~~~~Ip~i~~~~s-----k~eLG~a~G 86 (112)
+++|..+..-|... .+...+-+.++|||..+.-+ +++|-...|
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 35555555555442 45555666777877643222 345655666
No 215
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=30.84 E-value=69 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
+.+.+++++| +++||+++..+.....++..+|+++++.++- +.+
T Consensus 51 ~~v~e~~~~G-v~~viis~Gf~~~~~~~l~~~A~~~g~rliG-PNc 94 (480)
T 3dmy_A 51 ELANQALDRN-LNVMMFSDNVTLEDEIQLKTRAREKGLLVMG-PDC 94 (480)
T ss_dssp HHHHHHHHTT-CEEEECCCCCCHHHHHHHHHHHHHTTCCEEC-SSC
T ss_pred HHHHHHHhcC-CCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-cCc
Confidence 4466677778 5588898888877778888999999998884 444
No 216
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=30.80 E-value=1.3e+02 Score=21.69 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
....+..|...++.|++. .+..++.+.+.......++.=-..++ .....+..+|++++|.++.|
T Consensus 122 ~~~~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 192 (281)
T 1vbj_A 122 FIDTWKAFEKLYADKKVRAIGVSNFHEHHIEELLKHCKVAPMVNQIELHPLLNQKALCEYCKSKNIAVTAW 192 (281)
T ss_dssp HHHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHTSCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCccEEEeeCCCHHHHHHHHHhCCCCceeeeEEeccccCCHHHHHHHHHcCCEEEEe
Confidence 346777888888888753 34566777776555443333333344 22356888999999999865
No 217
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=30.60 E-value=51 Score=24.21 Aligned_cols=43 Identities=5% Similarity=-0.030 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.+...+.++|++..=-+| ...+.|..+|+++++.++.
T Consensus 175 ~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~ 221 (409)
T 3kki_A 175 CDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV 221 (409)
T ss_dssp HHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 466777777655688888754333 2257899999999999985
No 218
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=30.59 E-value=1.3e+02 Score=21.93 Aligned_cols=65 Identities=6% Similarity=0.037 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCch-hhhhHHHHHHhCCCcEEEec
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPPL-RKSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~~ 75 (112)
.+.....|...++.|++. ....++.+.+........+.-...++- ....+..+|++++|.++.|.
T Consensus 144 ~~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 215 (312)
T 1zgd_A 144 VKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFS 215 (312)
T ss_dssp HHHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHTTCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHhCCCCceEEeeecCcccCCHHHHHHHHHcCCEEEEec
Confidence 457788888899999864 345677777766555444444444442 23578899999999998753
No 219
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=30.56 E-value=51 Score=24.01 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+..+.+.+..+.++++|.+..... ++.+-+..+||++.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~~---l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHYW---FDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGGG---HHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHHH---HHHHHHHCCCCEEc
Confidence 3445666777899999999986543 44455667899985
No 220
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=30.48 E-value=72 Score=23.97 Aligned_cols=43 Identities=5% Similarity=-0.086 Sum_probs=28.7
Q ss_pred HHHHHHHHh--cCCceEEEEeCCC-C--------chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLR--SSKGKLILLSNNC-P--------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~--~gka~lVilA~D~-s--------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.|+ ..+..+||+-.-. + +...+.+..+|+++++++|.
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~ 250 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEE
Confidence 355666665 3456666665433 2 23368899999999999994
No 221
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=30.41 E-value=92 Score=23.36 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH
Q 033719 35 LRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 80 (112)
Q Consensus 35 ~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e 80 (112)
++.+-.+..-.||++.+..+ -..+...|++++||+.....+..+
T Consensus 73 ler~l~~~~P~IIltrg~~~--peelie~A~~~~IPVL~T~~~ts~ 116 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEP--PEELIEAAKEHETPLITSKIATTQ 116 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCC--CHHHHHHHHHTTCCEEECCSCHHH
T ss_pred HHHHhcCCCCEEEEeCCCCC--CHHHHHHHHHCCCeEEEECCchhH
Confidence 33444577888999988765 345778899999999874444443
No 222
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=30.38 E-value=1.2e+02 Score=22.22 Aligned_cols=64 Identities=6% Similarity=-0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEec
Q 033719 12 ESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~~ 75 (112)
+.+...|...++.|++. ....++.+.+........+.=-..++ .....+..+|++++|.++.|.
T Consensus 131 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~v~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 201 (298)
T 1vp5_A 131 HCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVHHEIVPAVNQIEIHPFYQRQEEIEFMRNYNIQPEAWG 201 (298)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHCCCEEEEec
Confidence 45677788888888863 24567777776655433333333333 223568889999999998753
No 223
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=30.37 E-value=1.4e+02 Score=21.74 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCce--EEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGK--LILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~--lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...+++|++. ....++.+.+...... .++.=-..++ .....+..+|++++|+++.|
T Consensus 145 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 217 (324)
T 3ln3_A 145 FCDTWERLEECXDAGLVXSIGVSNFNHRQLERILNXPGLXYXPVCNQVECHLYLNQRXLLDYCESXDIVLVAY 217 (324)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCeeEEEecCCcHHHHHHHHHhcCccCCceeeEeeeCcccchHHHHHHHHHcCCEEEEe
Confidence 567888999999999875 3567777777765554 3333223333 12467889999999999875
No 224
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=30.32 E-value=44 Score=24.83 Aligned_cols=51 Identities=6% Similarity=-0.046 Sum_probs=31.8
Q ss_pred HHHHHHHHhc--CCceEEEEeCC-CCc--------hhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 31 YKTVLRSLRS--SKGKLILLSNN-CPP--------LRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~D-~s~--------~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
.+.+.+++++ .+.++|++-.. -+| ...+.|..+|++++++++. .....++|
T Consensus 191 ~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~-De~~~~~g 252 (429)
T 1s0a_A 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIA-DEIATGFG 252 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEE-ECTTTTTT
T ss_pred HHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE-eehhhCCc
Confidence 3556667764 45667766543 222 2267888999999999995 44433343
No 225
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.17 E-value=1.1e+02 Score=20.91 Aligned_cols=38 Identities=13% Similarity=0.020 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCceEEEEeC-CCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSN-NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~-D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+..+.+..+++.-+|+.. +.++ .....+...+||++.
T Consensus 59 ~~~~~~~~~~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~ 97 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILLYSREND----RIIQYLHEQNFPFVL 97 (292)
T ss_dssp HHHHHHHHTTCCCEEEESCCBTTC----HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCh----HHHHHHHHCCCCEEE
Confidence 3456667777777766654 3322 344455667899984
No 226
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=30.09 E-value=49 Score=24.09 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC-CCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA-KVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~-~Ip~i~ 73 (112)
..+.+.+..++++++|.+..... -++.+-+.. +||++.
T Consensus 61 ~~~~L~~~g~~~iVIACNTa~~~--al~~lr~~~~~iPvig 99 (268)
T 3out_A 61 TAKFLIDQEVKAIIIACNTISAI--AKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHH--HHHHHHHHHTTSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCChHHH--HHHHHHHhcCCCCEEe
Confidence 45566677899999998875531 223344455 799986
No 227
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=29.99 E-value=90 Score=22.40 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+..+..|...++.|++. ....++.+.+........+.=-..++ .....+..+|++++|+++.|
T Consensus 117 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 187 (278)
T 1hw6_A 117 YVHAWEKMIELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVNQIELHPAYQQREITDWAAAHDVKIESW 187 (278)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhcCCCceeEEEEeCcccCCHHHHHHHHHcCCEEEEe
Confidence 356777888888888863 24556666665544322222222233 12256888999999998865
No 228
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=29.87 E-value=95 Score=23.03 Aligned_cols=43 Identities=5% Similarity=-0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHh---cCCceEEEEeCCCCc--------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLR---SSKGKLILLSNNCPP--------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~---~gka~lVilA~D~s~--------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.++++ ..+.++||+-..-++ ...+.|..+|++++++++.
T Consensus 187 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 240 (439)
T 3dxv_A 187 LTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC 240 (439)
T ss_dssp HHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 455666674 455677777654332 2268899999999999995
No 229
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=29.75 E-value=1.3e+02 Score=20.74 Aligned_cols=39 Identities=23% Similarity=0.096 Sum_probs=20.7
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+...++.-+|+...-++ ........+...+||++.
T Consensus 49 ~i~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~~~iPvV~ 87 (306)
T 8abp_A 49 AIDSLAASGAKGFVICTPDPK-LGSAIVAKARGYDMKVIA 87 (306)
T ss_dssp HHHHHHHTTCCEEEEECSCGG-GHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCch-hhHHHHHHHHHCCCcEEE
Confidence 344444455666555543222 223333456677899985
No 230
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=29.67 E-value=1.1e+02 Score=22.20 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCcee------cHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYTL------GYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv~------G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+..+..|...++.|++.. ...++.+.+.......++.--..++ .....+..+|++++|+++.|
T Consensus 140 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (283)
T 3o0k_A 140 FMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAW 210 (283)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCcceEEeccCcHHHHHHHHHhCCCCeEEEEeecCcccCcHHHHHHHHHCCcEEEEe
Confidence 3566777888888888642 4556666665444333332222333 12356888999999999875
No 231
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=29.64 E-value=47 Score=26.08 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=37.0
Q ss_pred ecHHHHHHHHhcCC-ceEEEEeCCCCchhhhhHHHHHHh--CCCcEEEecCC
Q 033719 29 LGYKTVLRSLRSSK-GKLILLSNNCPPLRKSEIEYYAML--AKVGVHHYNGN 77 (112)
Q Consensus 29 ~G~~~v~kai~~gk-a~lVilA~D~s~~~~~~i~~~c~~--~~Ip~i~~~~s 77 (112)
.+.+++.+.+++-. -.||++..|-|-.+..+|.+++++ ++||++..+.|
T Consensus 91 ~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkT 142 (419)
T 3hno_A 91 REYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKT 142 (419)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEeccc
Confidence 46677778877655 558899999998999999888876 45888864443
No 232
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=29.56 E-value=74 Score=20.79 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHhcCCceEEEEeCCC----CchhhhhHHHHHHhCCCcEE
Q 033719 34 VLRSLRSSKGKLILLSNNC----PPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~----s~~~~~~i~~~c~~~~Ip~i 72 (112)
..+..+...+.+|.++.|- .+++...+..+++++++++-
T Consensus 74 l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p 116 (185)
T 2gs3_A 74 LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFD 116 (185)
T ss_dssp HHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSE
T ss_pred HHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCe
Confidence 3344444447788887774 33456678888888887655
No 233
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=29.56 E-value=72 Score=24.39 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=33.4
Q ss_pred CceEEEEeCC-CCchhhhhHHHHHHhCCCcEEEecCCHHHHHh-hhCCcccEEEEEEeC
Q 033719 42 KGKLILLSNN-CPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT-ACGKYFRVSCLSIID 98 (112)
Q Consensus 42 ka~lVilA~D-~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~-a~Gk~~~~~vvaI~d 98 (112)
++-++|+-.+ -|.|++ +|...|++.+.|.+ +..+-+||-. |+. .. ..+||+-
T Consensus 225 ~vD~miVVGg~nSSNT~-rL~eia~~~g~~ty-~Ie~~~el~~~wl~-g~--~~VGITA 278 (328)
T 3szu_A 225 QAEVVLVVGSKNSSNSN-RLAELAQRMGKRAF-LIDDAKDIQEEWVK-EV--KCVGVTA 278 (328)
T ss_dssp HCSEEEEECCTTCHHHH-HHHHHHHHTTCEEE-EESSGGGCCHHHHT-TC--SEEEEEE
T ss_pred hCCEEEEeCCCCCchHH-HHHHHHHHhCCCEE-EeCChHHCCHHHhC-CC--CEEEEee
Confidence 3555555444 455555 57889999999988 5899888854 342 11 2477763
No 234
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=29.52 E-value=64 Score=24.10 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=30.2
Q ss_pred HHHHHHHHhc---CCceEEEEeCCCC--------chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS---SKGKLILLSNNCP--------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~---gka~lVilA~D~s--------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.++|.. ++.++|++..=.. ....+.|..+|++++++++.
T Consensus 169 ~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 222 (467)
T 2oqx_A 169 LEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM 222 (467)
T ss_dssp HHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3566777764 4677888753221 23467889999999999995
No 235
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=29.36 E-value=94 Score=22.14 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=29.7
Q ss_pred hcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEE
Q 033719 39 RSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI 96 (112)
Q Consensus 39 ~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI 96 (112)
....+..+++|.+..+.. ..+-+..+||++.............|+ ++++++.
T Consensus 66 ~~~g~d~iviaCnt~~~l----~~lr~~~~iPvigi~e~~~~~a~~~~~--rigVlaT 117 (245)
T 3qvl_A 66 REQGVDGHVIASFGDPGL----LAARELAQGPVIGIAEAAMHMATMVAT--RFSIVTT 117 (245)
T ss_dssp HHHTCSEEEEC-CCCTTH----HHHHHHCSSCEEEHHHHHHHHHHHHCS--CEEEEES
T ss_pred HHCCCCEEEEeCCChhHH----HHHHHHcCCCEECccHHHHHHHHHcCC--EEEEEEc
Confidence 345699999999987643 334456789999622222233333453 4544544
No 236
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=29.17 E-value=62 Score=23.76 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=29.7
Q ss_pred HHHHHHHHhcC--CceEEEEeCCC-CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS--KGKLILLSNNC-PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g--ka~lVilA~D~-s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++... +.++|++..-. .+.-.+.|..+|++++++++.
T Consensus 109 ~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~ 154 (394)
T 1o69_A 109 VDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIE 154 (394)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEE
Confidence 45666777653 57787776522 123457888999999999885
No 237
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=29.10 E-value=1.3e+02 Score=24.20 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=33.5
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHH---HhhhCCc
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL---GTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eL---G~a~Gk~ 88 (112)
+.++.|.+-.+.+||++.|+++.... ++..++|+++. ...+.+| ..++|-.
T Consensus 283 ~~le~I~~~g~~lvI~~~~I~~~al~----~L~~~~I~av~-~~~k~~le~ia~~TGa~ 336 (559)
T 3p9d_A 283 ERVKKIIDAGAQVVLTTKGIDDLCLK----EFVEAKIMGVR-RCKKEDLRRIARATGAT 336 (559)
T ss_dssp HHHHHHHTTCCSEEEESSCCCGGGTH----HHHHTTCEEES-SCCHHHHHHHHHHSSCC
T ss_pred HHHHHHHhhCCCEEEEcCCCCHHHHH----HHHHcCCceEc-cCCHHHHHHHHHHhCCE
Confidence 34555556668899999999886544 34567888885 6666544 4455544
No 238
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=29.04 E-value=1.1e+02 Score=24.66 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHH---HhhhCCc
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL---GTACGKY 88 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eL---G~a~Gk~ 88 (112)
++..+.|.+-.+.+||.+.++++.... ++..++|.++. ...+.+| .+++|-.
T Consensus 285 ~~~v~~I~~~g~~vvi~~~~I~~~al~----~L~~~gI~av~-~v~~~~leria~~tGa~ 339 (568)
T 3p9d_H 285 DAMMKEIADMGVECIVAGAGVGELALH----YLNRYGILVLK-VPSKFELRRLCRVCGAT 339 (568)
T ss_dssp HHHHHHHHHTTCCEEEECSCCCHHHHH----HHHHHTCEEEC-CCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCeEEEECCCcChHHHH----HHHHCCeEEEe-cCCHHHHHHHHHHhCCE
Confidence 346667777778999999999885443 44567899986 6666655 4555643
No 239
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=29.02 E-value=1.2e+02 Score=19.65 Aligned_cols=51 Identities=4% Similarity=-0.061 Sum_probs=28.8
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC----CCcEEEecCCHHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA----KVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~----~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.+....+.+|.++.|..+ .+..+++.+ ++++-.+.+...++.+.+|..
T Consensus 57 ~~~~~~~~~v~vv~vs~d~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (187)
T 1we0_A 57 EYAELKKLGVEVYSVSTDTHF----VHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVL 111 (187)
T ss_dssp HHHHHHHTTEEEEEEESSCHH----HHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCE
T ss_pred HHHHHHHcCCEEEEEECCCHH----HHHHHHHHhccccCCCceEEECCchHHHHHhCCC
Confidence 344444445778888877532 344444544 443332234457888888875
No 240
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=29.00 E-value=99 Score=18.68 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=27.8
Q ss_pred HHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHh--hhCC
Q 033719 36 RSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT--ACGK 87 (112)
Q Consensus 36 kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~--a~Gk 87 (112)
+..+...+.++.+..|.++ ..+..+.+.+++++..+.+...++.. ..|.
T Consensus 57 ~~~~~~~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 107 (142)
T 3ewl_A 57 EMVENGTLRVLAIYPDENR---EEWATKAVYMPQGWIVGWNKAGDIRTRQLYDI 107 (142)
T ss_dssp HHHHHTSEEEEEEECSSCH---HHHHHHHTTSCTTCEEEECTTCHHHHTTCSCC
T ss_pred HHhccCCeEEEEEEecCCH---HHHHHHHHHcCCCcceeeCCccchhhHHHcCC
Confidence 3344444677777777544 33455666777665544455556654 6664
No 241
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=28.90 E-value=1.1e+02 Score=22.49 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 12 ESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
......|...+++|++. ....++.+.+.......++.--...+ .....+..+|++++|.++.|
T Consensus 158 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~i~~~~nq~~~~~~~~~~~ll~~c~~~gI~v~a~ 227 (314)
T 3b3d_A 158 KEAWRALETLYKEGRIKAIGVSNFQIHHLEDLMTAAEIKPMINQVEFHPRLTQKELIRYCQNQGIQMEAW 227 (314)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHTTTCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHHHHHCCCEeEEEecCCchHHHHHHHHhcCCCeEEEEeccccccchHHHHHHHHHcCCEEEEe
Confidence 45567788888888864 35677777777666555443333333 24467888999999999865
No 242
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.89 E-value=1.1e+02 Score=19.05 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=41.6
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEe-cCCHHHHHhh
Q 033719 30 GYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHY-NGNNVDLGTA 84 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~-~~sk~eLG~a 84 (112)
..+.++++++.+---||++-.-+|.+-...+..-++.-+|.|-.. ..+.+||-+-
T Consensus 39 dirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqr 94 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQR 94 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHH
Confidence 356677788776677888888899999999999888888887642 3467777653
No 243
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=28.87 E-value=1.5e+02 Score=21.35 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 12 ESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
......|...++.|++. ....++.+.+.......++.--...+ .....+..+|++++|.++.|
T Consensus 127 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~a~ 196 (290)
T 4gie_A 127 VDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITAW 196 (290)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTTCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHCCCcceeeecCCCHHHHHHHHHhccCCCceeeEeccccchhHHHHHHHHHcCceEeee
Confidence 45667777888888865 34566777776665544433323333 23467888999999999865
No 244
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=28.87 E-value=87 Score=18.38 Aligned_cols=37 Identities=11% Similarity=0.314 Sum_probs=25.4
Q ss_pred HHHHHh---cCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLR---SSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~---~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++++ .|. .|.|++.|-. ....|..+|+..+-.+..
T Consensus 27 ~kkal~~l~~G~-~l~V~~dd~~--a~~di~~~~~~~G~~~~~ 66 (82)
T 3lvj_C 27 VRKTVRNMQPGE-TLLIIADDPA--TTRDIPGFCTFMEHELVA 66 (82)
T ss_dssp HHHHHHTSCTTC-EEEEEECCTT--HHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCCCC-EEEEEECCcc--HHHHHHHHHHHCCCEEEE
Confidence 445554 344 4677777753 467899999998888774
No 245
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=28.83 E-value=1.3e+02 Score=19.92 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=30.2
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC---------CCcEEEecCCHHHHHhhhCCc
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA---------KVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~---------~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+..+.++...+.+|.++.|..+ .+..+++.+ +.|++ .+...++.+.+|..
T Consensus 61 ~l~~~~~~~~v~vi~Is~D~~~----~~~~~~~~~~~~~~~~~~~~p~l--~D~~~~~~~~ygv~ 119 (202)
T 1uul_A 61 DRVKEFSDIGCEVLACSMDSEY----SHLAWTSIERKRGGLGQMNIPIL--ADKTKCIMKSYGVL 119 (202)
T ss_dssp HTHHHHHTTTEEEEEEESSCHH----HHHHHHHSCGGGTCCCSCSSCEE--ECTTCHHHHHHTCE
T ss_pred HHHHHHHHCCCEEEEEeCCCHH----HHHHHHHHHHhhCCCCCCceeEE--ECCchHHHHHcCCc
Confidence 3344455556888888887432 344455543 45665 34557888888865
No 246
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=28.72 E-value=29 Score=27.52 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=20.9
Q ss_pred CCCchhhhhHHHHHHhCCCcEEEec
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i~~~ 75 (112)
|+++.....+...|++.+|||=.+.
T Consensus 367 ~~~~~~~~~~~~ia~~~~Ip~Q~~~ 391 (450)
T 2glf_A 367 DAHAEFVARVRKVLNEQGVIWQVAT 391 (450)
T ss_dssp BCCHHHHHHHHHHHHHTTCCEEECC
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5677888999999999999997533
No 247
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=28.72 E-value=1.7e+02 Score=21.32 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHHhC-C---cee---------cHHHHHHHH-hcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 8 KKTHESINNRLALVMKSG-K---YTL---------GYKTVLRSL-RSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 8 ~~~~~~i~~~Lgla~kag-k---lv~---------G~~~v~kai-~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+...++++++++..++.. . +.. |.+.-.+.+ +.| +.-||+ .|.+++....+...|+.+++..+.
T Consensus 78 G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aG-vdGvIi-pDlp~ee~~~~~~~~~~~gl~~I~ 155 (271)
T 3nav_A 78 KTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAG-VDSVLI-ADVPTNESQPFVAAAEKFGIQPIF 155 (271)
T ss_dssp TCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHT-CCEEEE-TTSCGGGCHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCC-CCEEEE-CCCCHHHHHHHHHHHHHcCCeEEE
Confidence 455678899999888762 2 233 444444444 444 444444 699998888999999999976442
Q ss_pred e--cCC-HHHHHhhh
Q 033719 74 Y--NGN-NVDLGTAC 85 (112)
Q Consensus 74 ~--~~s-k~eLG~a~ 85 (112)
+ +.| .+.+-.+.
T Consensus 156 lvap~t~~eri~~i~ 170 (271)
T 3nav_A 156 IAPPTASDETLRAVA 170 (271)
T ss_dssp EECTTCCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 2 323 34555444
No 248
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=28.69 E-value=51 Score=25.24 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=28.5
Q ss_pred HHHHHHHhc--CCceEEEEeC----CC-----CchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRS--SKGKLILLSN----NC-----PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~--gka~lVilA~----D~-----s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.+.++|.+ .+..+||+-. .. ++...+.+..+|++++++++.
T Consensus 221 ~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 273 (457)
T 3tfu_A 221 AAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIF 273 (457)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 445556653 4566676655 11 334578899999999999994
No 249
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Probab=28.33 E-value=1.4e+02 Score=21.86 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCc--eEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKG--KLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka--~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...+++|++. ....++.+.+..... ...+.=...++ .....+..+|++++|.++.|
T Consensus 144 ~~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~v~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 216 (331)
T 1s1p_A 144 LCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAY 216 (331)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEEeCCCHHHHHHHHHhcCccCCCceeeeecCCCcChHHHHHHHHHcCCEEEEe
Confidence 457788888899999863 345677777776555 33333333444 12356889999999999875
No 250
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.23 E-value=1e+02 Score=21.89 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
...+++++.++. +.++.+-+|-+. .....+|++++||++.
T Consensus 36 ~~~~l~~l~~~~~~~~I~~Vvt~~~~---~~~~~~A~~~gIp~~~ 77 (229)
T 3auf_A 36 LQAILDGCREGRIPGRVAVVISDRAD---AYGLERARRAGVDALH 77 (229)
T ss_dssp HHHHHHHHHTTSSSEEEEEEEESSTT---CHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCc---hHHHHHHHHcCCCEEE
Confidence 345677777763 455544455322 2356789999999984
No 251
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=28.22 E-value=93 Score=19.30 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCC--chhhhhHHHHHHhCCCc---EEEecCCHHHHHhhhCCc
Q 033719 41 SKGKLILLSNNCP--PLRKSEIEYYAMLAKVG---VHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s--~~~~~~i~~~c~~~~Ip---~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.+|.++.|.. ++....+..+...++++ +. .....++.+.+|..
T Consensus 70 ~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~ 120 (164)
T 2h30_A 70 SSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVV--TDNGGTIAQNLNIS 120 (164)
T ss_dssp TTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEE--ECTTCHHHHHTTCC
T ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEE--EcCchHHHHHcCCC
Confidence 3467777776542 23445566666665544 54 34556888888753
No 252
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=28.18 E-value=38 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=20.7
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 56 RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 56 ~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.-.+|...+++++||+++ . ..|.+++-
T Consensus 28 ~A~~I~e~A~e~gVPi~e-~---~~LAr~Ly 54 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVR-D---VKLARKLY 54 (93)
T ss_dssp HHHHHHHHHHHTTCCEEE-C---HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEE-C---HHHHHHHH
Confidence 457889999999999996 2 45666654
No 253
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=28.17 E-value=58 Score=24.93 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=27.1
Q ss_pred HHhcCCceEEEEeCCCC-------chhhhhHHHHHHhCCCcEEE
Q 033719 37 SLRSSKGKLILLSNNCP-------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 37 ai~~gka~lVilA~D~s-------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++|++-.||+..|.= .-..-.+--.|+.++||++.
T Consensus 220 ~M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV 263 (351)
T 1t5o_A 220 VMQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYV 263 (351)
T ss_dssp HHHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEE
T ss_pred HhhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEE
Confidence 45668899999998863 12234556688899999985
No 254
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=28.11 E-value=31 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.002 Sum_probs=21.2
Q ss_pred hhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 033719 58 SEIEYYAMLAKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 58 ~~i~~~c~~~~Ip~i~~~~sk~eLG~a~G 86 (112)
.-|..+|+.+++|+.. ++.+||...-+
T Consensus 58 ~gL~~~A~~lg~pl~~--~~~eeL~~v~~ 84 (145)
T 2w6k_A 58 PGLRQLATLLERPVHF--LAPAVLHDYEP 84 (145)
T ss_dssp HHHHHHHHHHTSCEEE--ECHHHHHTTGG
T ss_pred HHHHHHHHHhCCCcEE--eCHHHHhhccc
Confidence 3478899999999984 68888886544
No 255
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=28.05 E-value=63 Score=23.55 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCceEEE-EeCCCC-------chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLIL-LSNNCP-------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVi-lA~D~s-------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+...++++..+.++|+ +.+=.+ ....+.+..+|++++++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 45667777765677774 433111 22345788899999999884
No 256
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=28.03 E-value=80 Score=23.38 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=18.2
Q ss_pred CCCCchhhhhHHHHHHhCCCcEE
Q 033719 50 NNCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 50 ~D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
++.|+....++..++++.+|+++
T Consensus 228 ~eps~~~l~~l~~~ik~~~v~~I 250 (313)
T 1toa_A 228 SEASAHDMQELAAFIAQRKLPAI 250 (313)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE
Confidence 34455677888889999999998
No 257
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=28.02 E-value=93 Score=22.97 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCceEEEEeC-------CCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS--SKGKLILLSN-------NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~-------D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++++ .+.+++++.+ ..++...+.|..+|+++++.++.
T Consensus 182 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 182 FDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4667777764 4567777652 22334567888899999998885
No 258
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=28.01 E-value=87 Score=25.06 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++.+.|.+-+--++++..-+.....+.+..+++..++|++.
T Consensus 234 ~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~ 275 (604)
T 2x7j_A 234 SDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILA 275 (604)
T ss_dssp HHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEE
Confidence 456666766665555555555445568899999999999986
No 259
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=27.95 E-value=89 Score=22.67 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHHHhcC---CceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS---KGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g---ka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.+... +.++|++.+--+| .-.+.|..+|++++++++.
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMV 208 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEE
Confidence 35566677653 6788887765544 2358888999999999985
No 260
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=27.82 E-value=93 Score=22.96 Aligned_cols=43 Identities=5% Similarity=-0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHhcC--CceEEEEeCCCCc--------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS--KGKLILLSNNCPP--------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g--ka~lVilA~D~s~--------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.++.. +..+|++-...++ ...+.|..+|++++++++.
T Consensus 186 ~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 238 (427)
T 3fq8_A 186 LEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238 (427)
T ss_dssp HHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34566677653 5667776554332 2268899999999999984
No 261
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=27.77 E-value=36 Score=26.03 Aligned_cols=45 Identities=7% Similarity=0.144 Sum_probs=26.3
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHH
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL 81 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eL 81 (112)
++.+.+++.++..|+||+|..+.....+.. .. .+++.+..+.+++
T Consensus 294 ~i~~~~~~~~~~~VyiATD~~~~~~~~l~~---~~-~~~~~~~~~~~~~ 338 (408)
T 4ap5_A 294 KIRSLMKTHRLDKVFVATDAVRKEYEELKK---LL-PEMVRFEPTWEEL 338 (408)
T ss_dssp HHHHHHHHHTCSCEEEEECCCHHHHHHHHH---HC-TTEECCCCCHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCchhHHHHHHH---hC-CCcEEecCcchhh
Confidence 344445566788999999987765554433 22 2333245555554
No 262
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=27.76 E-value=1.1e+02 Score=19.02 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=30.7
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCCch-----------hhhhHHHHHHhCCCcE
Q 033719 27 YTLGYKTVLRSLRSSKGKLILLSNNCPPL-----------RKSEIEYYAMLAKVGV 71 (112)
Q Consensus 27 lv~G~~~v~kai~~gka~lVilA~D~s~~-----------~~~~i~~~c~~~~Ip~ 71 (112)
+..+..++++.++..-..++|.++-.... ...++..+++++++|+
T Consensus 25 ~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~~nG~~~~~~~~~~~~i~~~~~~~~~~~ 80 (126)
T 1xpj_A 25 PRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPY 80 (126)
T ss_dssp BCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCChhhccccccccCHHHHHHHHHHHHHcCCCE
Confidence 44567777777776667777766554332 2467888888999986
No 263
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=27.76 E-value=44 Score=24.80 Aligned_cols=32 Identities=9% Similarity=-0.144 Sum_probs=26.0
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
...-+||-+.|-- .++..+.++|..+++|++.
T Consensus 136 ~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~ 167 (292)
T 3h8v_A 136 KPVDLVLSCVDNF-EARMTINTACNELGQTWME 167 (292)
T ss_dssp BCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEE
T ss_pred CCCCEEEECCcch-hhhhHHHHHHHHhCCCEEE
Confidence 4678898787753 4778899999999999993
No 264
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=27.63 E-value=93 Score=23.03 Aligned_cols=43 Identities=7% Similarity=-0.025 Sum_probs=28.8
Q ss_pred HHHHHHHHhc-----CCceEEEEeCCC-------CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS-----SKGKLILLSNNC-------PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-----gka~lVilA~D~-------s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.++++. .+.++|++.+=. +++..+.|..+|+++++.++.
T Consensus 175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556666654 367787776322 234457888899999999984
No 265
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=27.62 E-value=1.1e+02 Score=21.59 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=20.1
Q ss_pred HHHHhcCCceEEEEe-CCCCchhhhhHHHHHHhCCCcEEE
Q 033719 35 LRSLRSSKGKLILLS-NNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 35 ~kai~~gka~lVilA-~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
++.+...++..+|+. .|.+ .. ......+...+||++.
T Consensus 53 i~~li~~~vdgiii~~~~~~-~~-~~~~~~a~~~gipvV~ 90 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPD-GL-CPALKRAMQRGVKILT 90 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSS-TT-HHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEeCCCHH-HH-HHHHHHHHHCcCEEEE
Confidence 444445566665554 4433 12 2233455677899885
No 266
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=27.54 E-value=62 Score=25.56 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=27.2
Q ss_pred cHHHHHHHHhc----CCceEEEEeCCCC---chhhhhHHHHHHhCCCcEEE
Q 033719 30 GYKTVLRSLRS----SKGKLILLSNNCP---PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~----gka~lVilA~D~s---~~~~~~i~~~c~~~~Ip~i~ 73 (112)
-.+.+.++|++ +.+-+|.-++..+ .+-.+.+..+|.+++||++.
T Consensus 183 d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~V 233 (450)
T 3bc8_A 183 DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 233 (450)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEE
Confidence 35667777755 2233333333433 23457788899999999985
No 267
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=27.53 E-value=78 Score=21.16 Aligned_cols=44 Identities=11% Similarity=-0.008 Sum_probs=28.9
Q ss_pred cHHHHHHHHhcC--CceEEEEeCCCC-------------------chhhhhHHHHHHhCCCcEEE
Q 033719 30 GYKTVLRSLRSS--KGKLILLSNNCP-------------------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~g--ka~lVilA~D~s-------------------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..++.++.++.. .++++++..-.. ....+.+...|+++++|++.
T Consensus 115 ~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD 179 (232)
T 3dc7_A 115 ALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLS 179 (232)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEe
Confidence 556667777654 577777654211 12345667789999999996
No 268
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=27.45 E-value=66 Score=23.92 Aligned_cols=43 Identities=2% Similarity=-0.102 Sum_probs=28.9
Q ss_pred HHHHHHHHhc--CCceEEEEeCCC--------CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS--SKGKLILLSNNC--------PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~D~--------s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.+++ ++.++||+-..- ++...+.|..+|++++++++.
T Consensus 190 ~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~ 242 (434)
T 2epj_A 190 VEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242 (434)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3556666764 366677763321 234478899999999999984
No 269
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=27.40 E-value=1.8e+02 Score=21.10 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhCCcee------cHHHHHHHHhcCCce--EEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 10 THESINNRLALVMKSGKYTL------GYKTVLRSLRSSKGK--LILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 10 ~~~~i~~~Lgla~kagklv~------G~~~v~kai~~gka~--lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
..+.....|...++.|++.. ...++.+.+...... .++.--..++ .....+..+|+++||.++.|
T Consensus 137 ~~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (316)
T 3o3r_A 137 TFLDAWEGMEELVDQGLVKALGVSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLTQEKLIQYCHSKGIAVIAY 210 (316)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBCCHHHHHHHHTTTCEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHhCCCCCCceEeeccCCcccchHHHHHHHHHcCCEEEEe
Confidence 34678889999999999742 566777777655432 3333333333 22367889999999999875
No 270
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=27.39 E-value=1.8e+02 Score=21.18 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEe
Q 033719 12 ESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 12 ~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~ 74 (112)
+..+..|..+++.|++. ....++.+.+.......+-+-=+.-......+..+|++++|.++.|
T Consensus 148 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~Q~~~nl~~~~~e~l~~~~~~~gI~v~a~ 216 (317)
T 1ynp_A 148 DETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVR 216 (317)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEECCCHHHHHHHHHHSCCCEEEEECBTTBCGGGGGHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHhcCCCEEEeccCCchhCCHHHHHHHHHHcCCeEEEe
Confidence 45667777788888862 3456666766665543333322222222223888999999999865
No 271
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=27.39 E-value=1e+02 Score=21.56 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCc--eEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKG--KLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka--~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
...+++++.++.. .++.+-+|-+. .....+|+++|||++.
T Consensus 15 ~~~~l~~l~~~~~~~~i~~Vvs~~~~---~~~~~~A~~~gIp~~~ 56 (216)
T 2ywr_A 15 LQAIIDAIESGKVNASIELVISDNPK---AYAIERCKKHNVECKV 56 (216)
T ss_dssp HHHHHHHHHTTSSCEEEEEEEESCTT---CHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCC---hHHHHHHHHcCCCEEE
Confidence 4567777777653 55444444322 2356789999999984
No 272
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=27.38 E-value=72 Score=23.39 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=32.1
Q ss_pred HHHHHHHHhc----CCceEEEEeC---CC-----CchhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 31 YKTVLRSLRS----SKGKLILLSN---NC-----PPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 31 ~~~v~kai~~----gka~lVilA~---D~-----s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
.+.+.+++++ .+.++|++-. +. ++...+.|..+|++++++++. ...-.++|
T Consensus 184 ~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~-De~~~~~~ 246 (426)
T 1sff_A 184 IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA-DEVQSGAG 246 (426)
T ss_dssp HHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEE-ECTTTTTT
T ss_pred HHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE-echhhccC
Confidence 3455666654 4667777732 22 223478889999999999985 44433444
No 273
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=27.25 E-value=53 Score=21.77 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=29.1
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC---------CCcEEEecCCHHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA---------KVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~---------~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.++...+.+|.++.|..+.. ..+++.+ +.|++ .+...++.+.+|..
T Consensus 60 l~~~~~~~~v~vv~Is~d~~~~~----~~~~~~~~~~~~~~~~~~p~l--~D~~~~~~~~~gv~ 117 (197)
T 1qmv_A 60 RAEDFRKLGCEVLGVSVDSQFTH----LAWINTPRKEGGLGPLNIPLL--ADVTRRLSEDYGVL 117 (197)
T ss_dssp THHHHHTTTEEEEEEESSCHHHH----HHHHTSCGGGTCCCSCSSCEE--ECTTCHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEECCCHHHH----HHHHHHHHhhCCCCCCceEEE--ECCcHHHHHHcCCc
Confidence 34445545578888888764433 3333332 45665 34556888988875
No 274
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=27.21 E-value=1e+02 Score=18.24 Aligned_cols=54 Identities=2% Similarity=0.044 Sum_probs=27.6
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
.+.++.+..|.++ ..+..+.+.+++++-.+.+...++.+..|.... -.+-+.|+
T Consensus 55 ~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-P~~~lid~ 108 (136)
T 1lu4_A 55 AVTFVGIATRADV---GAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ-PAFVFYRA 108 (136)
T ss_dssp TSEEEEEECSSCH---HHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS-SEEEEECT
T ss_pred CcEEEEEEcCCCH---HHHHHHHHHcCCCceEEECCchhHHHhcCCCCC-CEEEEECC
Confidence 4566666655443 233444444444333223456788888886422 23445543
No 275
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=27.12 E-value=1.1e+02 Score=22.41 Aligned_cols=64 Identities=8% Similarity=0.132 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.+...|...++.|++. ....++.+.+.......++.=-..++ .....+..+|+++||+++.|
T Consensus 137 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~v~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 207 (296)
T 1mzr_A 137 YVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESW 207 (296)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHSCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCcCEEEEeCCCHHHHHHHHHhcCCCceEEeeecccccCCHHHHHHHHHCCCeEEEe
Confidence 356777888888888863 23455666665433333332223333 22356888999999999865
No 276
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.07 E-value=1.2e+02 Score=21.44 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=22.8
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..+.+...++.-+|+.....+. ..+..++...+||++.
T Consensus 111 ~~~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~iPvV~ 148 (338)
T 3dbi_A 111 AIQYLLDLRCDAIMIYPRFLSV--DEIDDIIDAHSQPIMV 148 (338)
T ss_dssp HHHHHHHTTCSEEEECCSSSCH--HHHHHHHHHCSSCEEE
T ss_pred HHHHHHhCCCCEEEEeCCCCCh--HHHHHHHHcCCCCEEE
Confidence 4555656666666665432221 3466677788899884
No 277
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=27.06 E-value=55 Score=20.58 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=16.7
Q ss_pred HhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 033719 65 MLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 99 (112)
Q Consensus 65 ~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~ 99 (112)
+.+++++..+.+...++.+.+|....= .+.|.|+
T Consensus 91 ~~~~~~~~~~~d~~~~~~~~~~v~~~P-~~~lid~ 124 (158)
T 3hdc_A 91 RRAPVSFNFLSDATGQVQQRYGANRLP-DTFIVDR 124 (158)
T ss_dssp GGCCCSCEEEECTTSHHHHHTTCCSSS-EEEEECT
T ss_pred HHcCCCceEEECchHHHHHHhCCCCcc-eEEEEcC
Confidence 334444332234456888888764322 2444543
No 278
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=27.05 E-value=1e+02 Score=23.23 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCC--------chhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCP--------PLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s--------~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
.+.+.+.++..+.++|++-..-+ +...+.+..+|++++++++. ......+|
T Consensus 212 ~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~-DEv~~g~g 270 (439)
T 2oat_A 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA-DEIQTGLA 270 (439)
T ss_dssp HHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEE-ECTTTTTT
T ss_pred HHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE-eccccCCc
Confidence 35566666545677777643322 23568899999999999994 44333343
No 279
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=27.04 E-value=1.5e+02 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTA 84 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a 84 (112)
.+.++.|.+-.+.+||.+.|+++... +++..++|.++. .-.+++|-+.
T Consensus 228 ~~~le~I~~~g~~lvi~~~~I~~~al----~~L~~~~I~av~-~~~k~~le~i 275 (500)
T 3aq1_B 228 REMAEKVIASGANVVFCQKGIDDMAQ----YYIEKAGIYAVR-RVKKSDLKRL 275 (500)
T ss_dssp HHHHHHHHTTCCSEEEESSCBCHHHH----HHHHHTTCEEEC-SCCHHHHHHH
T ss_pred HHHHHHHHHhCcCEEEECCCcCHHHH----HHHHHCCEEEEE-eCCHHHHHHH
Confidence 45667777778999999999987543 344567888885 6666655443
No 280
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=27.03 E-value=1.4e+02 Score=21.45 Aligned_cols=44 Identities=7% Similarity=-0.053 Sum_probs=31.2
Q ss_pred ecHHHHHHHHhc----CCceEEEEeCCCCchhhhhHHHHHHhCCCcEE
Q 033719 29 LGYKTVLRSLRS----SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 29 ~G~~~v~kai~~----gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
.|.-.++.+|.+ ....+.|+..|.++..++.+..++..+++.+.
T Consensus 18 ~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~ 65 (276)
T 3tzt_A 18 PQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLY 65 (276)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence 344445555522 24678899999999999999999887776554
No 281
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=27.01 E-value=1.1e+02 Score=22.12 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
....+..|...++.|++. ....++.+.+........+.=-..++ .....+..+|++++|.++.|
T Consensus 125 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 195 (283)
T 2wzm_A 125 YVDSWGGLMKVKEDGIARSIGVCNFGAEDLETIVSLTYFTPAVNQIELHPLLNQAALREVNAGYNIVTEAY 195 (283)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEEcCCCHHHHHHHHHhcCCCcccccccCCcccCCHHHHHHHHHCCCEEEEe
Confidence 346677788888888863 34556666665544322222222233 12356888999999998875
No 282
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=27.01 E-value=41 Score=29.45 Aligned_cols=35 Identities=6% Similarity=0.104 Sum_probs=28.6
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
..-+||.+.|.+...+..+..+|..++||++. ..+
T Consensus 113 ~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~-~~~ 147 (1015)
T 3cmm_A 113 QFQVVVATDTVSLEDKVKINEFCHSSGIRFIS-SET 147 (1015)
T ss_dssp GCSEEEECTTSCHHHHHHHHHHHHHHTCEEEE-EEE
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEE-EEe
Confidence 36788888775778889999999999999994 544
No 283
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=27.01 E-value=1.5e+02 Score=20.16 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=30.8
Q ss_pred HHHHHHhcCCc-eEEEEeCCCCchhhhhHHHHHHhCC---CcEEEecCCHHHHHhhhCCc
Q 033719 33 TVLRSLRSSKG-KLILLSNNCPPLRKSEIEYYAMLAK---VGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka-~lVilA~D~s~~~~~~i~~~c~~~~---Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+..+.++...+ .+|-++.|.. .....+++.++ .|++ .+...+++++.|..
T Consensus 59 ~~~~~~~~~~~~~vv~is~d~~----~~~~~~~~~~~~~~~~~l--~D~~~~~~~~~gv~ 112 (241)
T 1nm3_A 59 ELAPVFKKYGVDDILVVSVNDT----FVMNAWKEDEKSENISFI--PDGNGEFTEGMGML 112 (241)
T ss_dssp HHHHHHHHTTCCEEEEEESSCH----HHHHHHHHHTTCTTSEEE--ECTTSHHHHHTTCE
T ss_pred HHHHHHHHCCCCEEEEEEcCCH----HHHHHHHHhcCCCceEEE--ECCCcHHHHHhCce
Confidence 34444555557 7888888742 23445556554 5565 34556788988864
No 284
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=27.01 E-value=41 Score=24.43 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++..--+| .-.+.|..+|++++++++.
T Consensus 127 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 173 (411)
T 3nnk_A 127 PDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYT 173 (411)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEE
Confidence 466777777656778877652222 1257899999999999985
No 285
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=26.91 E-value=1.5e+02 Score=20.31 Aligned_cols=40 Identities=13% Similarity=-0.079 Sum_probs=22.1
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++.+...++.-+|+..-.++... .+...+...+||++.
T Consensus 55 ~~~~~l~~~~vdgiI~~~~~~~~~~-~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 55 EQILEFVHLKVDAIFITTLDDVYIG-SAIEEAKKAGIPVFA 94 (293)
T ss_dssp HHHHHHHHTTCSEEEEECSCTTTTH-HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCEEEEecCChHHHH-HHHHHHHHcCCCEEE
Confidence 4455555666666666543232222 333455667899985
No 286
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=26.75 E-value=91 Score=22.48 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=25.8
Q ss_pred CCCchhhhhHHHHHHhCCCcEEEecCC--HHHHHhhhCCcccE
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVHHYNGN--NVDLGTACGKYFRV 91 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i~~~~s--k~eLG~a~Gk~~~~ 91 (112)
+.|+.....+..++++.+|+++ |..+ ...+.+.+-+...+
T Consensus 206 eps~~~l~~l~~~ik~~~v~~i-f~e~~~~~~~~~~ia~~~g~ 247 (284)
T 2prs_A 206 QPGAQRLHEIRTQLVEQKATCV-FAEPQFRPAVVESVARGTSV 247 (284)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEE-EECTTSCSHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-EEeCCCChHHHHHHHHHcCC
Confidence 4455677888899999999999 5432 23444555444344
No 287
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=26.68 E-value=74 Score=21.74 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHH-----hCCCcEEEecCCHHHHHhhhCCc
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAM-----LAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~-----~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+..+.++...+.+|.++.|..+...+-+..+.+ ..+.|++ .+...++.+.+|..
T Consensus 94 ~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l--~D~~~~~~~~ygv~ 152 (222)
T 3ztl_A 94 DQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLL--ADRKQEISKAYGVF 152 (222)
T ss_dssp HTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEE--ECSSSHHHHHTTCB
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEE--eCCchHHHHHcCCe
Confidence 344445544578888888764433322221111 2345555 34457888888864
No 288
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=26.67 E-value=90 Score=23.36 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=30.8
Q ss_pred HHHHHHHHh---cCCceEEEEeCC-------C-CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLR---SSKGKLILLSNN-------C-PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~---~gka~lVilA~D-------~-s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.+. ..+..+||+-.. . ++...+.|..+|+++++.++.
T Consensus 201 ~~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~ 254 (452)
T 3n5m_A 201 VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLIS 254 (452)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEE
Confidence 567777776 355677777654 1 234478899999999999994
No 289
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=26.64 E-value=90 Score=19.23 Aligned_cols=39 Identities=18% Similarity=0.044 Sum_probs=26.0
Q ss_pred HHHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.++|++=+ -.|.|++.|. .....|..+|+..+-.+..
T Consensus 43 ktkkaL~~l~~Ge~L~Vl~dd~--~a~~dIp~~~~~~G~~v~~ 83 (97)
T 1je3_A 43 ATLEAMPQLKKGEILEVVSDCP--QSINNIPLDARNHGYTVLD 83 (97)
T ss_dssp HHHHHTTTCCSSCEEEEEEBCS--SSSCHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCCCEEEEEECCc--chHHHHHHHHHHCCCEEEE
Confidence 3555665422 2478888884 4457799999988877763
No 290
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=26.63 E-value=98 Score=22.63 Aligned_cols=43 Identities=5% Similarity=-0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHhc--CCceEEEEeC-------CCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS--SKGKLILLSN-------NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~-------D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++++ ....++++.+ ..+.+..+.|.++|+++++.++.
T Consensus 170 ~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 221 (409)
T 4eu1_A 170 LAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV 221 (409)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 4667777763 3455555432 22334567788899999999885
No 291
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=26.63 E-value=1.5e+02 Score=20.06 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=30.0
Q ss_pred HHHHHHHHhcC--CceEEEEeCCCCchh----hhhHHHHHHhCCCcEEEecCCHH
Q 033719 31 YKTVLRSLRSS--KGKLILLSNNCPPLR----KSEIEYYAMLAKVGVHHYNGNNV 79 (112)
Q Consensus 31 ~~~v~kai~~g--ka~lVilA~D~s~~~----~~~i~~~c~~~~Ip~i~~~~sk~ 79 (112)
.+++++.+++. ++.+||++.|..... -..+....+..++|++...++-+
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD 82 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHD 82 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTS
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34555666553 689999999986432 22344444556889885455433
No 292
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=26.52 E-value=71 Score=23.00 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=30.2
Q ss_pred HHHHHHHHhc-CCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS-SKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++++ .+.++|++..=.+|. -.+.|..+|++++++++.
T Consensus 122 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 169 (392)
T 2z9v_A 122 PQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIV 169 (392)
T ss_dssp HHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEE
Confidence 4667777864 467888776533331 247888999999999884
No 293
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=26.51 E-value=1.7e+02 Score=21.18 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCc--eEEEEeCCCCch-hhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKG--KLILLSNNCPPL-RKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka--~lVilA~D~s~~-~~~~i~~~c~~~~Ip~i~~ 74 (112)
.......|...++.|++. ....++.+.+..... ...+.=-..++- ....+..+|+++||.++.|
T Consensus 138 ~~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 210 (316)
T 1us0_A 138 ILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAY 210 (316)
T ss_dssp HHHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHTCTTCCSCCSEEEEECBTTBCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHhCcccCCceeeehhcCCccCCHHHHHHHHHcCCEEEEe
Confidence 467888888899999863 356677777776554 333333333331 2356888999999999875
No 294
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=26.42 E-value=74 Score=25.08 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=32.5
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCCch--hhhhHHHHHHhCCCcEEE
Q 033719 29 LGYKTVLRSLRSSKGKLILLSNNCPPL--RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~s~~--~~~~i~~~c~~~~Ip~i~ 73 (112)
.-.+++.+.++..+.++|++..-.-+. -.+.|..+|++++++++.
T Consensus 190 iD~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~liv 236 (490)
T 2a7v_A 190 IDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLA 236 (490)
T ss_dssp BCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEE
Confidence 346788888876567888775444332 257888999999999984
No 295
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=26.35 E-value=1.1e+02 Score=22.08 Aligned_cols=33 Identities=9% Similarity=-0.078 Sum_probs=22.9
Q ss_pred hcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 39 RSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 39 ~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+..++++++|.+..... -++.+-+..+||++.
T Consensus 81 ~~~g~d~IviaCNTas~~--~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 81 ERYPLALAVVACNTASTV--SLPALREKFDFPVVG 113 (285)
T ss_dssp HHSCCSEEEECCHHHHHH--HHHHHHHHCSSCEEC
T ss_pred HhCCCCEEEEECccccHH--HHHHHHHhCCCCEEe
Confidence 445699999999886531 234444567899996
No 296
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=26.24 E-value=1.6e+02 Score=21.28 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...++.|++. ....++.+......+..++.--...+ .....+..+|++++|.++.|
T Consensus 139 ~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~a~ 209 (324)
T 4gac_A 139 YKETWKALEVLVAKGLVKALGLSNFNSRQIDDVLSVASVRPAVLQVECHPYLAQNELIAHCHARGLEVTAY 209 (324)
T ss_dssp HHHHHHHHHHHHHTTSBSCEEEESCCHHHHHHHHHHCSSCCCEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCeeEecCCCCCHHHHHHHHHhCCCCcceeeeccCchhhHHHHHHHHHHhceeeeec
Confidence 467788888899999874 35666777776665544444333334 23467889999999999875
No 297
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=26.19 E-value=38 Score=24.58 Aligned_cols=41 Identities=7% Similarity=-0.017 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCceEEEEeCCCC-------chhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCP-------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s-------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++.+++.. +.++|++.+=.. ....+.|..+|++++++++.
T Consensus 159 ~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 159 RSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp GGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 345556654 577888743222 23456688899999999884
No 298
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=26.09 E-value=1.1e+02 Score=18.10 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=34.2
Q ss_pred ecHHHHHHHHhcCCceE-EEEeCCCCc--hhhhhHHHHHHhCCCcEEEe-cCCH------HHHHhhhCCc
Q 033719 29 LGYKTVLRSLRSSKGKL-ILLSNNCPP--LRKSEIEYYAMLAKVGVHHY-NGNN------VDLGTACGKY 88 (112)
Q Consensus 29 ~G~~~v~kai~~gka~l-VilA~D~s~--~~~~~i~~~c~~~~Ip~i~~-~~sk------~eLG~a~Gk~ 88 (112)
...++..+.+.+++..+ .|.|..|++ .....+..+++.+++++..+ .... .++....|..
T Consensus 17 ~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~ 86 (118)
T 1zma_A 17 TTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIP 86 (118)
T ss_dssp CCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCC
Confidence 34566667777777554 455666666 23455666777766555521 2222 2566777753
No 299
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=26.03 E-value=1.1e+02 Score=21.92 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++ ..+.++|++.+=-+| ...+.+.++|++++++++.
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46677777 566788877542222 2356677789999999985
No 300
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=26.00 E-value=80 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+.+++.+++.||.-+-.+++..+.| +++.++|+..
T Consensus 213 ~~l~~~ik~~~v~~if~e~~~~~~~~~~i---a~~~g~~v~~ 251 (284)
T 2prs_A 213 HEIRTQLVEQKATCVFAEPQFRPAVVESV---ARGTSVRMGT 251 (284)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCSHHHHHH---TTTSCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCChHHHHHH---HHHcCCeEEE
Confidence 46677889999999999998888766555 7888999975
No 301
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=25.98 E-value=36 Score=20.54 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=21.7
Q ss_pred EEEEeCCCCchhhhhHHHHHHhCCCc
Q 033719 45 LILLSNNCPPLRKSEIEYYAMLAKVG 70 (112)
Q Consensus 45 lVilA~D~s~~~~~~i~~~c~~~~Ip 70 (112)
+++++=|+++.-+.++...|+.++.+
T Consensus 2 ~vlv~YDI~~kR~~kv~k~l~~yg~r 27 (85)
T 2i0x_A 2 YIVVVYDVGVERVNKVKKFLRMHLNW 27 (85)
T ss_dssp EEEEEEECCSSSHHHHHHHHTTTSEE
T ss_pred EEEEEeeCChHHHHHHHHHHHHhCcc
Confidence 57889999887788999999988754
No 302
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=25.98 E-value=55 Score=22.81 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCC--ceEEEEeCCCCc-h--h-----hhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSK--GKLILLSNNCPP-L--R-----KSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gk--a~lVilA~D~s~-~--~-----~~~i~~~c~~~~Ip~i~ 73 (112)
...+--.+++|+ +.+||+..|.=- | + .-.+--.|+.++||++.
T Consensus 38 Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V 90 (191)
T 1w2w_B 38 DSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFV 90 (191)
T ss_dssp GGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEE
T ss_pred chHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEE
Confidence 445555567788 999999988621 1 2 24556688899999985
No 303
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=25.92 E-value=1.4e+02 Score=23.73 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=32.1
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCC
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGK 87 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~---eLG~a~Gk 87 (112)
+.++.|.+-.+.+||.+.|.++.... ++..++|..+. ...+. .|..++|-
T Consensus 264 ~~le~I~~~g~~vvi~~~~I~~~al~----~L~~~~I~av~-~~~~~~le~ia~~tGa 316 (513)
T 3iyg_B 264 EKVERILKHGINCFINRQLIYNYPEQ----LFGAAGVMAIE-HADFVGVERLALVTGG 316 (513)
T ss_pred HHHHHHHhcCCCEEEEcCCccHHHHH----HHHHcCceEEe-cCCHHHHHHHHHHhCC
Confidence 35566666678899999999875443 44567777775 44444 44445554
No 304
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=25.90 E-value=79 Score=22.57 Aligned_cols=43 Identities=14% Similarity=0.001 Sum_probs=29.8
Q ss_pred HHHHHHHHhc-CCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS-SKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++++ .+.++|++..=.+| .-.+.|..+|++++++++.
T Consensus 134 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 134 PEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFV 181 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEE
Confidence 4667777764 46788887742222 1247888999999999884
No 305
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=25.89 E-value=1.2e+02 Score=18.70 Aligned_cols=41 Identities=12% Similarity=-0.007 Sum_probs=19.6
Q ss_pred HHHHHHhcCCceEEEE-eCCCCc-hhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILL-SNNCPP-LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVil-A~D~s~-~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++|+--.++. +.|-.- ..-..+...|.+.+|++..
T Consensus 71 ~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~v 113 (117)
T 3hh1_A 71 QVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVP 113 (117)
T ss_dssp HHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEE
Confidence 3444555555433333 344332 2334455555666676653
No 306
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=25.88 E-value=36 Score=21.43 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=19.4
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 56 RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 56 ~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
.-.++...+++++||+++ . ..|.+++
T Consensus 43 ~A~~I~~~A~e~gVPi~e-~---~~LAr~L 68 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMR-N---VPLAHQL 68 (97)
T ss_dssp HHHHHHHHHHHHTCCEEE-C---HHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEE-C---HHHHHHH
Confidence 447889999999999996 2 4455554
No 307
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=25.86 E-value=1.1e+02 Score=18.26 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=23.0
Q ss_pred cCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 40 SSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 40 ~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.|. .|.|++.|. ...+.|..+|+..+-.+..
T Consensus 28 ~G~-~L~V~~dd~--~a~~dI~~~~~~~G~~v~~ 58 (87)
T 3hz7_A 28 AGG-VVTVLVDND--ISRQNLQKMAEGMGYQSEY 58 (87)
T ss_dssp GCC-EEEEEESSH--HHHHHHHHHHHHHTCEEEE
T ss_pred CCC-EEEEEECCc--cHHHHHHHHHHHCCCEEEE
Confidence 443 577777664 5678899999998888774
No 308
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=25.81 E-value=1.4e+02 Score=21.76 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCc--eEEEEeCCCCc-hhhhhHHHHHHhCCCcEEEe
Q 033719 11 HESINNRLALVMKSGKYT------LGYKTVLRSLRSSKG--KLILLSNNCPP-LRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 11 ~~~i~~~Lgla~kagklv------~G~~~v~kai~~gka--~lVilA~D~s~-~~~~~i~~~c~~~~Ip~i~~ 74 (112)
.+.....|...++.|++. ....++.+.+..... ...+.=...++ .....+..+|++++|.++.|
T Consensus 144 ~~e~~~ale~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~ 216 (323)
T 1afs_A 144 ICDTWEAMEKCKDAGLAKSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYLNQSKMLDYCKSKDIILVSY 216 (323)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcCEEEeeCCCHHHHHHHHHhcCcCCCCEEEeeccccccchHHHHHHHHHcCCEEEEe
Confidence 457888899999999874 346677777766555 33333333443 12356888999999999875
No 309
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.74 E-value=55 Score=22.48 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCceEEEE-eCCCCc-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 033719 32 KTVLRSLRSSKGKLILL-SNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 32 ~~v~kai~~gka~lVil-A~D~s~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+.+..++..| +.+|-+ ..|.++ ...+.+..+|..+++|++. .+..++...+|-+
T Consensus 17 ~~~~~a~~~G-v~~v~lr~k~~~~~~~~~~i~~l~~~~~~~liv--nd~~~~A~~~gad 72 (210)
T 3ceu_A 17 KIITALFEEG-LDILHLRKPETPAMYSERLLTLIPEKYHRRIVT--HEHFYLKEEFNLM 72 (210)
T ss_dssp HHHHHHHHTT-CCEEEECCSSCCHHHHHHHHHHSCGGGGGGEEE--SSCTTHHHHTTCS
T ss_pred HHHHHHHHCC-CCEEEEccCCCCHHHHHHHHHHHHHHhCCeEEE--eCCHHHHHHcCCC
Confidence 3455556655 444444 445554 3455677788888999983 4666888888765
No 310
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=25.58 E-value=1.1e+02 Score=18.10 Aligned_cols=12 Identities=8% Similarity=-0.097 Sum_probs=6.7
Q ss_pred hHHHHHHhCCCc
Q 033719 59 EIEYYAMLAKVG 70 (112)
Q Consensus 59 ~i~~~c~~~~Ip 70 (112)
-+...++..+++
T Consensus 79 ~~~~~~~~~~~~ 90 (137)
T 2pr7_A 79 AFQAAADAIDLP 90 (137)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 345556666664
No 311
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=25.54 E-value=98 Score=24.60 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++.+.|.+ +--++++..-+.....+.+..+++..++|++.
T Consensus 215 ~~~~~~L~~-~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~ 255 (578)
T 3lq1_A 215 QKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKLGWPILA 255 (578)
T ss_dssp HHHHHHTTT-SCEEEEECSCCCTTCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHhcc-CCeEEEECCCCChHHHHHHHHHHHhcCcEEEE
Confidence 344455666 54444444444333457889999999999996
No 312
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=25.44 E-value=73 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.3
Q ss_pred CCCCchhhhhHHHHHHhCCCcEEEec
Q 033719 50 NNCPPLRKSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 50 ~D~s~~~~~~i~~~c~~~~Ip~i~~~ 75 (112)
++.|+.....+...+++.+|+++ |.
T Consensus 208 ~eps~~~l~~l~~~ik~~~v~~i-f~ 232 (284)
T 3cx3_A 208 QEPSPRQLTEIQEFVKTYKVKTI-FT 232 (284)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCCE-EE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE-EE
Confidence 34555677888889999999998 44
No 313
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=25.41 E-value=1.7e+02 Score=20.13 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHH---HH-----HhCCCcEEEecCCHHHHHhhhCC
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEY---YA-----MLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~---~c-----~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
+..+.+++..+.+|-++.|..+....-+.. .. ...+.|++ .+...++.++.|.
T Consensus 56 ~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil--~D~~~~va~~ygv 116 (224)
T 1prx_A 56 KLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPII--DDRNRELAILLGM 116 (224)
T ss_dssp HHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEE--ECTTCHHHHHTTS
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCccee--ecCchHHHHHhCC
Confidence 344555566688999998865433322222 11 12345666 3555678888886
No 314
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=25.35 E-value=75 Score=22.41 Aligned_cols=43 Identities=9% Similarity=-0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHhcC-CceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS-KGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g-ka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++... +.++|++..-.+| ...+.|..+|++++++++.
T Consensus 119 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 166 (366)
T 1m32_A 119 VQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIV 166 (366)
T ss_dssp HHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEE
Confidence 46677777764 4666665443222 1257888999999999984
No 315
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=25.24 E-value=1.7e+02 Score=20.07 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhh---hHHHHHHhCC--CcEEEecCCHHHHHhhhCC
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKS---EIEYYAMLAK--VGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~---~i~~~c~~~~--Ip~i~~~~sk~eLG~a~Gk 87 (112)
..+.+++..+.+|-++.|..+.... .+..+|..++ .|++ .+...++.++.|.
T Consensus 57 l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil--~D~~~~va~~ygv 113 (220)
T 1xcc_A 57 MHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIV--CDESRELANKLKI 113 (220)
T ss_dssp THHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEE--ECTTSHHHHHHTC
T ss_pred HHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeE--ECchhHHHHHhCC
Confidence 3445555668899999886443332 2222322344 5655 3556788898886
No 316
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=25.11 E-value=1.1e+02 Score=21.76 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=22.2
Q ss_pred HHHHhc-CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 35 LRSLRS-SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 35 ~kai~~-gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
...+.+ +++.-+|+..|.+ ....+...+...+||++.
T Consensus 54 ~~~i~~~~~vDgiIi~~~~~--~~~~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 54 RELFQGRDKPDYLMLVNEQY--VAPQILRLSQGSGIKLFI 91 (350)
T ss_dssp HHHHHSSSCCSEEEEECCSS--HHHHHHHHHTTSCCEEEE
T ss_pred HHHHhcCCCCCEEEEeCchh--hHHHHHHHHHhCCCcEEE
Confidence 334443 5777777766432 233445566778999985
No 317
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=25.09 E-value=64 Score=24.96 Aligned_cols=38 Identities=3% Similarity=-0.003 Sum_probs=27.2
Q ss_pred HHHhcCCceEEEEeCCCC---chh-----hhhHHHHHHhCCCcEEE
Q 033719 36 RSLRSSKGKLILLSNNCP---PLR-----KSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 36 kai~~gka~lVilA~D~s---~~~-----~~~i~~~c~~~~Ip~i~ 73 (112)
-.+++|++-.||+..|.= -++ .-.+--.|+.++||++.
T Consensus 246 ~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV 291 (374)
T 2yvk_A 246 HTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFV 291 (374)
T ss_dssp HHHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred HHhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEE
Confidence 345668899999998852 122 24456688899999985
No 318
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=25.09 E-value=1e+02 Score=23.32 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=30.1
Q ss_pred HHHHHHHHhc-CCceEEEEeCCC--------CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS-SKGKLILLSNNC--------PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-gka~lVilA~D~--------s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+...+++.. .+.+++++-... +++..+.|-++|+++++.++.
T Consensus 161 ~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~ 212 (405)
T 3k7y_A 161 YDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIF 212 (405)
T ss_dssp HHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEE
Confidence 4567777765 456777776543 345567788899999998875
No 319
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=25.08 E-value=68 Score=22.91 Aligned_cols=43 Identities=5% Similarity=-0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhC--CCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLA--KVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~--~Ip~i~ 73 (112)
.+.+.+++...+.++|++..=.+|- -.+.|..+|+++ +++++.
T Consensus 126 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 126 LELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp HHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEE
Confidence 3566777766567787776433221 247888999999 999885
No 320
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.00 E-value=1.3e+02 Score=20.23 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=21.8
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++.+...++.-+|+....+. . ......+...+||++.
T Consensus 49 ~~~~~l~~~~vdgiIi~~~~~~-~-~~~~~~~~~~~iPvV~ 87 (272)
T 3o74_A 49 QLQQLFRARRCDALFVASCLPP-E-DDSYRELQDKGLPVIA 87 (272)
T ss_dssp HHHHHHHHTTCSEEEECCCCCS-S-CCHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCEEEEecCccc-c-HHHHHHHHHcCCCEEE
Confidence 4555666666666666543322 1 2233445667899984
No 321
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.95 E-value=1.6e+02 Score=20.10 Aligned_cols=39 Identities=3% Similarity=-0.042 Sum_probs=22.1
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+...++.-+|+..-.++.. ..+...+...+||++.
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~~~-~~~~~~~~~~~iPvV~ 99 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQYT-KGFTDALNELGIPYIY 99 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGGGT-HHHHHHHHHHTCCEEE
T ss_pred HHHHHHhcCCCEEEECCCChHHH-HHHHHHHHHCCCeEEE
Confidence 35556667777666664333222 2333445566899884
No 322
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=24.73 E-value=86 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP 54 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~ 54 (112)
.+++++.+.+.++-+|+++.|.-.
T Consensus 41 l~~lv~~~~~~~~D~VliaGDLfd 64 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGDIFH 64 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCBS
T ss_pred HHHHHHHHHhcCCCEEEEcCcccc
Confidence 356777777889999999999854
No 323
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=24.68 E-value=1.4e+02 Score=26.18 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=44.0
Q ss_pred ecHHHHHHHHhc--CCceEEEEeCCCCchh---hhhHHHHHHhCCCcEEEecC---CHHHHHhhhCCccc
Q 033719 29 LGYKTVLRSLRS--SKGKLILLSNNCPPLR---KSEIEYYAMLAKVGVHHYNG---NNVDLGTACGKYFR 90 (112)
Q Consensus 29 ~G~~~v~kai~~--gka~lVilA~D~s~~~---~~~i~~~c~~~~Ip~i~~~~---sk~eLG~a~Gk~~~ 90 (112)
.|...+.+.|++ .++.-||+|+|++... -.++.++|...+-|+...++ |+.++=+|+..+..
T Consensus 644 ~~~~~~~~~lk~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~~~~~~~R~~f~~it~~aI~~a~~~~~~ 713 (1104)
T 4ddu_A 644 DDKTETLRALREISLEADEILVATDPDVEGEKISWDVTQYLLPSTRSLRRIEMHEITRYGFKKARESVRF 713 (1104)
T ss_dssp EEHHHHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHTTTCSCEEECCCSSSSHHHHHHHHHTCBC
T ss_pred ccHHHHHHHHHHHHhcCCEEEECcCCchhHHHHHHHHHHHhcccCCCeEEEEEccCCHHHHHHHHhCCCc
Confidence 467777777755 6799999999999754 46677777655556655443 78888888876544
No 324
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=24.62 E-value=39 Score=21.29 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.7
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 56 RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 56 ~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
.-.+|...+++++||+++ . ..|.+++
T Consensus 28 ~A~~I~e~A~e~gVPi~e-~---~~LAr~L 53 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIV-D---IKLARSL 53 (98)
T ss_dssp HHHHHHHHHHHHTCCEEE-C---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCeec-C---HHHHHHH
Confidence 457889999999999996 2 4455554
No 325
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.62 E-value=1.5e+02 Score=20.58 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCceEEEEeC-CCCchhhhhHHHHHHhCCCcEEEecC
Q 033719 31 YKTVLRSLRSSKGKLILLSN-NCPPLRKSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~-D~s~~~~~~i~~~c~~~~Ip~i~~~~ 76 (112)
..+..+.+..+++.-+|+.. +.++ .....+...+||++. .+
T Consensus 54 ~~~~~~~l~~~~vdGiIi~~~~~~~----~~~~~l~~~~iPvV~-~~ 95 (294)
T 3qk7_A 54 YQSLIHLVETRRVDALIVAHTQPED----FRLQYLQKQNFPFLA-LG 95 (294)
T ss_dssp CHHHHHHHHHTCCSEEEECSCCSSC----HHHHHHHHTTCCEEE-ES
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCCh----HHHHHHHhCCCCEEE-EC
Confidence 35567777777766666654 3333 233445667899985 44
No 326
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=24.47 E-value=96 Score=21.92 Aligned_cols=49 Identities=8% Similarity=-0.020 Sum_probs=28.3
Q ss_pred HHHHHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecC----CHHHHHhhh
Q 033719 33 TVLRSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNG----NNVDLGTAC 85 (112)
Q Consensus 33 ~v~kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~----sk~eLG~a~ 85 (112)
.++++++.+. +.++.+-+|-+... ...+|++++||++. +. ..+++-..+
T Consensus 24 all~~~~~~~~~~~I~~Vis~~~~a~---~l~~A~~~gIp~~~-~~~~~~~~~~~~~~L 78 (215)
T 3kcq_A 24 ALAKAFSTEESSVVISCVISNNAEAR---GLLIAQSYGIPTFV-VKRKPLDIEHISTVL 78 (215)
T ss_dssp HHHHHTCCC-CSEEEEEEEESCTTCT---HHHHHHHTTCCEEE-CCBTTBCHHHHHHHH
T ss_pred HHHHHHHcCCCCcEEEEEEeCCcchH---HHHHHHHcCCCEEE-eCcccCChHHHHHHH
Confidence 4555666664 56666666543211 24689999999984 32 235555544
No 327
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=24.36 E-value=1.4e+02 Score=18.90 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCC-cEEEecCC-HHHHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKV-GVHHYNGN-NVDLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~I-p~i~~~~s-k~eLG~a~Gk~ 88 (112)
..+.+|.++.|.. ..+..+++.+++ ++-.+.+. ..+++++.|..
T Consensus 76 ~~~~vv~is~d~~----~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 121 (166)
T 3p7x_A 76 EEGIVLTISADLP----FAQKRWCASAGLDNVITLSDHRDLSFGENYGVV 121 (166)
T ss_dssp TTSEEEEEESSCH----HHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCE
T ss_pred CCCEEEEEECCCH----HHHHHHHHHcCCCceEEccCCchhHHHHHhCCc
Confidence 4477888887743 345556666665 44322344 46899999875
No 328
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=24.33 E-value=1.4e+02 Score=21.31 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.++++.+ .++|++.+=.+| +..+++..+|++++++++.
T Consensus 140 ~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 140 LHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp HHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 46677777765 556666533222 3457777889999999985
No 329
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=24.31 E-value=83 Score=23.23 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCCCchhhhhHHHHHHhCCCcEEEecC---C---HHHHHhhhCCc
Q 033719 50 NNCPPLRKSEIEYYAMLAKVGVHHYNG---N---NVDLGTACGKY 88 (112)
Q Consensus 50 ~D~s~~~~~~i~~~c~~~~Ip~i~~~~---s---k~eLG~a~Gk~ 88 (112)
++.|+.....+..++++.+|+++ |.. + -+.|.+..|.+
T Consensus 221 ~eps~~~l~~l~~~ik~~~v~~I-f~e~~~~~~~~~~ia~e~g~~ 264 (312)
T 2o1e_A 221 QEPSAASLAKLKTYAKEHNVKVI-YFEEIASSKVADTLASEIGAK 264 (312)
T ss_dssp SCCCHHHHHHHHHHTTSSCCCEE-ECSSCCCHHHHHHHHHHTCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE-EEeCCCChHHHHHHHHHhCCc
Confidence 34555667788888888999998 543 2 23455555543
No 330
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=24.29 E-value=1.4e+02 Score=18.87 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEe-cCCHHHHHhhhCCcccEEEEEEeCcCchHHHhcC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHY-NGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 108 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~-~~sk~eLG~a~Gk~~~~~vvaI~d~g~a~~i~~~ 108 (112)
.+....+...|..+.|+=+.|- +....+...++..++|+..+ .-..-|+. +...+++|| -|+..+.|.++
T Consensus 38 ~~~~~~W~~~g~~kivlk~~~e--~~l~~l~~~a~~~gl~~~~i~DAG~Tei~-----~gt~Tvlai-gP~~~~~vd~i 108 (115)
T 2zv3_A 38 PRAVDEWLREGQKKVVVKVNSE--KELIDIYNKARSEGLPCSIIRDAGHTQLE-----PGTLTAVAI-GPEKDEKIDKI 108 (115)
T ss_dssp HHHHHHHHHTTCCEEEEEESSH--HHHHHHHHHHHHHTCCEEEEEECC------------EEEEEEE-EEECHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCH--HHHHHHHHHHHHcCCCEEEEEeCCceecC-----CCCEEEEEe-CcCCHHHHHHH
Confidence 4566677788999999888763 45566777788889996432 22222331 123446887 56666666543
No 331
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=24.28 E-value=44 Score=25.04 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceEEEEe-CCCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLS-NNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA-~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++. .+.++|++. ....+.-.+.|..+|++++++++.
T Consensus 148 ~~~l~~~i~-~~~~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~ 190 (437)
T 3bb8_A 148 ASLIEAAVS-DKTKAIMIAHTLGNLFDLAEVRRVADKYNLWLIE 190 (437)
T ss_dssp GGGHHHHCC-TTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhcC-CCCeEEEEeCCCCChhcHHHHHHHHHHcCCEEEE
Confidence 345566664 457888886 344445678899999999999985
No 332
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=24.09 E-value=55 Score=19.86 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCceEEE
Q 033719 31 YKTVLRSLRSSKGKLIL 47 (112)
Q Consensus 31 ~~~v~kai~~gka~lVi 47 (112)
..+|..++++|++.+|+
T Consensus 40 v~qv~~qL~~GeavIvf 56 (78)
T 1y0n_A 40 VERARHALRRGEAVILF 56 (78)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 46889999999998887
No 333
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=24.06 E-value=1e+02 Score=22.41 Aligned_cols=45 Identities=4% Similarity=-0.008 Sum_probs=32.0
Q ss_pred eecHHHHHHHH-h-c--CCceEEEEeCCCCchhhhhHHHHHHhCCCcEE
Q 033719 28 TLGYKTVLRSL-R-S--SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 28 v~G~~~v~kai-~-~--gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
..|...++.+| . . ....+.|+..|.++..++.+...+..+++.+.
T Consensus 12 ~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~ 60 (311)
T 1g9r_A 12 AAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60 (311)
T ss_dssp HHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEE
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEE
Confidence 44555566666 2 2 24678889999999999999998877665444
No 334
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.97 E-value=1.8e+02 Score=21.38 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=25.4
Q ss_pred ceecHHHHHHH----HhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 27 YTLGYKTVLRS----LRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 27 lv~G~~~v~ka----i~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++|.-..+++ .+.|. +.++.+-+|-+. ...+|+.++||+..
T Consensus 101 l~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~ 148 (292)
T 3lou_A 101 MVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPD-----FAPLAAQHGLPFRH 148 (292)
T ss_dssp EECSCCHHHHHHHHHHHHTSSCCEEEEEEESSST-----THHHHHHTTCCEEE
T ss_pred EEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEE
Confidence 34554444444 45564 566666666543 23469999999985
No 335
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=23.92 E-value=1.5e+02 Score=18.98 Aligned_cols=44 Identities=14% Similarity=-0.023 Sum_probs=27.3
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCC---------------chhhhhHHHHHHhCCCcEEE
Q 033719 30 GYKTVLRSLRSSKGKLILLSNNCP---------------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s---------------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..+++++.++...++++++.-=.. ......+..+|++++++++.
T Consensus 102 ~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD 160 (204)
T 3p94_A 102 NLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVD 160 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEc
Confidence 345566667666777777753110 11224567789999999984
No 336
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=23.91 E-value=44 Score=26.50 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=20.2
Q ss_pred CCCchhhhhHHHHHHhCCCcEEEe
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVHHY 74 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i~~ 74 (112)
|+++.....+...|++.+|||=.|
T Consensus 379 ~~~~~~~~~l~~ia~~~~Ip~Q~~ 402 (461)
T 2glj_A 379 DANPEYIAELRRILSKESVNWQTA 402 (461)
T ss_dssp CCCHHHHHHHHHHHHHTCCCEEEC
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEE
Confidence 456778899999999999999753
No 337
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=23.85 E-value=87 Score=22.12 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHHhc-----CCceEEEEeCCCCc--------hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS-----SKGKLILLSNNCPP--------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-----gka~lVilA~D~s~--------~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++.. .+.++|++.+=.+| ...+.+..+|++++++++.
T Consensus 116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~ 171 (347)
T 1jg8_A 116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 171 (347)
T ss_dssp HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEe
Confidence 4566777764 26788888533322 2346778899999999984
No 338
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=23.80 E-value=81 Score=20.47 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=28.7
Q ss_pred HHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033719 36 RSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 36 kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
+.++...+.++.++.|.. ..+..+++++++|+-...+...+++++.|.
T Consensus 61 ~~~~~~~v~vv~is~d~~----~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv 108 (164)
T 4gqc_A 61 AQLEKANAEVLAISVDSP----WCLKKFKDENRLAFNLLSDYNREVIKLYNV 108 (164)
T ss_dssp GGGGGSSSEEEEEESSCH----HHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred HHhhccCceEEEecCCCH----HHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence 344455567777776633 234456677766543224556689999885
No 339
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=23.69 E-value=50 Score=19.92 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=27.4
Q ss_pred EeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 48 LSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 48 lA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
+..|.+.-++..+...|+..+.|+ .+.|.||=.-+
T Consensus 22 l~~~l~klkVaeLK~eLk~RGL~~---sG~KaeLIeRL 56 (75)
T 2kvu_A 22 LPANLDDMKVAELKQELKLRSLPV---SGTKTELIERL 56 (75)
T ss_dssp CCTTTTTSCHHHHHHHHHHTTCCC---CSCHHHHHHHH
T ss_pred chHHHHHCcHHHHHHHHHHcCCCC---CCCHHHHHHHH
Confidence 456777778899999999999996 37888875443
No 340
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=23.67 E-value=1.1e+02 Score=23.13 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=21.8
Q ss_pred HHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 60 IEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 60 i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
+..+|+.+++|+.. ++.+||...-
T Consensus 253 L~~~A~~l~~pl~~--~~~eeL~~v~ 276 (336)
T 3eeq_A 253 VKKIADEFNVRFRL--VNEEEINNFM 276 (336)
T ss_dssp HHHHHHHHTCEEEE--CCHHHHHTCC
T ss_pred HHHHHHHhCCCEEE--eCHHHHhhcc
Confidence 99999999999983 7999999876
No 341
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=23.67 E-value=1.2e+02 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCceEEEEeCCCCc
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPP 54 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~ 54 (112)
+++++.+...++-+||++.|.-.
T Consensus 61 ~~ll~~~~~~~~D~VliaGDlfd 83 (431)
T 3t1i_A 61 DEILRLAQENEVDFILLGGDLFH 83 (431)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBS
T ss_pred HHHHHHHhhcCCCEEEEcCcccc
Confidence 55677777889999999999854
No 342
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=23.60 E-value=94 Score=21.75 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=33.7
Q ss_pred eecHHHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHH
Q 033719 28 TLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV 79 (112)
Q Consensus 28 v~G~~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~ 79 (112)
+.|.+...+.+++ .+..|++|.-.. ....+...|.+.+++.+ +.++..
T Consensus 127 V~~~~dl~ell~~-~ID~ViIA~Ps~--~~~ei~~~l~~aGi~~I-lnf~P~ 174 (211)
T 2dt5_A 127 IEHVDLLPQRVPG-RIEIALLTVPRE--AAQKAADLLVAAGIKGI-LNFAPV 174 (211)
T ss_dssp EEEGGGHHHHSTT-TCCEEEECSCHH--HHHHHHHHHHHHTCCEE-EECSSS
T ss_pred eecHHhHHHHHHc-CCCEEEEeCCch--hHHHHHHHHHHcCCCEE-EECCcc
Confidence 3457777777777 899999987443 34577778888888866 455433
No 343
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=23.57 E-value=88 Score=22.02 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=28.7
Q ss_pred HHHHHH-HHhc------CCceEEEEeCCC---C---chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLR-SLRS------SKGKLILLSNNC---P---PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~k-ai~~------gka~lVilA~D~---s---~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+ ++.. .+.++|++..-. . +.-.+.|..+|++++++++.
T Consensus 123 ~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~ 178 (356)
T 1v72_A 123 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM 178 (356)
T ss_dssp HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEE
Confidence 345556 5654 267888887521 1 23457788899999999985
No 344
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=23.56 E-value=1.7e+02 Score=19.54 Aligned_cols=43 Identities=7% Similarity=0.049 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
+++++.++..++.+||++.|.... . +.......++|++...++
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~--~-~~~~l~~l~~~~~~V~GN 84 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSL--F-VIKEFENLNANIIATYGN 84 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCST--H-HHHHGGGCSSEEEEECCT
T ss_pred HHHHHHHhhcCCCEEEECCCCCCH--H-HHHHHHhcCCCEEEEeCC
Confidence 455566666789999999997532 1 222223346777743444
No 345
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=23.55 E-value=1.8e+02 Score=23.31 Aligned_cols=47 Identities=9% Similarity=0.165 Sum_probs=30.9
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTA 84 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a 84 (112)
+.++.|.+-.+.+||++.|+++... +++..++|.++. .-.+.+|-+.
T Consensus 276 ~~le~I~~~g~~lvi~~~~I~~~al----~~L~~~~I~av~-~v~k~~le~i 322 (543)
T 1a6d_B 276 EMVDKIKSVGANVVITQKGIDDMAQ----HYLSRAGIYAVR-RVKKSDMDKL 322 (543)
T ss_dssp HHHHHHHHTTCCEEEESSCBCHHHH----HHHHHTTCEEEC-SCCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCcCHHHH----HHHHHCCeeEec-cCCHHHHHHH
Confidence 4455666666889999999987533 344557788875 5666554443
No 346
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.54 E-value=1.7e+02 Score=19.86 Aligned_cols=41 Identities=7% Similarity=-0.085 Sum_probs=21.7
Q ss_pred HHHHHHhcCCceEEEEe-CCCCc-hhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLS-NNCPP-LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA-~D~s~-~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++.+...++.-+|+. .|.+. +....+...+...+||++.
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~ 104 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAM 104 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEE
Confidence 34555555666655554 34321 1222344455667899984
No 347
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=23.49 E-value=80 Score=24.10 Aligned_cols=37 Identities=3% Similarity=-0.057 Sum_probs=26.8
Q ss_pred HHhcCCceEEEEeCCCCc---hh-----hhhHHHHHHhCCCcEEE
Q 033719 37 SLRSSKGKLILLSNNCPP---LR-----KSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 37 ai~~gka~lVilA~D~s~---~~-----~~~i~~~c~~~~Ip~i~ 73 (112)
.+++|++..||+..|.=- .+ .-.+--.|+.++||++.
T Consensus 222 ~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV 266 (347)
T 1t9k_A 222 LMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYV 266 (347)
T ss_dssp HHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred HhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEE
Confidence 456688999999988631 12 24556688899999985
No 348
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=23.40 E-value=1.2e+02 Score=22.46 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred CCCCchhhhhHHHHHHhCCCcEEEecC----CH--HHHHhhhCCc
Q 033719 50 NNCPPLRKSEIEYYAMLAKVGVHHYNG----NN--VDLGTACGKY 88 (112)
Q Consensus 50 ~D~s~~~~~~i~~~c~~~~Ip~i~~~~----sk--~eLG~a~Gk~ 88 (112)
++.|+.....+...+++++|+++ |.. ++ +.|.+..|.+
T Consensus 235 ~eps~~~l~~l~~~ik~~~v~~I-f~e~~~~~~~~~~iA~e~g~~ 278 (321)
T 1xvl_A 235 QQFTPKQVQTVIEEVKTNNVPTI-FCESTVSDKGQKQVAQATGAR 278 (321)
T ss_dssp CSCCHHHHHHHHHHHHTTTCSEE-EEETTSCSHHHHHHHTTTCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEE-EEeCCCChHHHHHHHHhcCCc
Confidence 34555677888889999999998 532 22 4455555554
No 349
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.31 E-value=1.7e+02 Score=20.28 Aligned_cols=40 Identities=20% Similarity=-0.019 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCceEEEEeC-CCCchhhhhHHHHHHhCCCcEEEecC
Q 033719 32 KTVLRSLRSSKGKLILLSN-NCPPLRKSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~-D~s~~~~~~i~~~c~~~~Ip~i~~~~ 76 (112)
.+..+.+...++.-+|+.. +.++ .....+...+||++. .+
T Consensus 73 ~~~~~~l~~~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~-i~ 113 (305)
T 3huu_A 73 HEVKTMIQSKSVDGFILLYSLKDD----PIEHLLNEFKVPYLI-VG 113 (305)
T ss_dssp HHHHHHHHTTCCSEEEESSCBTTC----HHHHHHHHTTCCEEE-ES
T ss_pred HHHHHHHHhCCCCEEEEeCCcCCc----HHHHHHHHcCCCEEE-EC
Confidence 3456667777777666654 4333 233445667899985 44
No 350
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=23.27 E-value=1.6e+02 Score=23.42 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHhcCCceEEEEeCCCCchh-hhhHHHHHHhCCCcEEEecCCHHH---HHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLR-KSEIEYYAMLAKVGVHHYNGNNVD---LGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~-~~~i~~~c~~~~Ip~i~~~~sk~e---LG~a~Gk~ 88 (112)
.++.|.+-.+.+||++.|...+. -....+++..++|.++. ...+.+ |..++|-.
T Consensus 274 ~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~-~~~k~~le~ia~~tGa~ 331 (528)
T 3p9d_D 274 ICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVK-DIEREEIEFLSKGLGCK 331 (528)
T ss_dssp HHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEE-CCCTHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEE-eCCHHHHHHHHHHHCCE
Confidence 34445555578999999992211 12234455678899996 665554 55556644
No 351
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=23.22 E-value=65 Score=23.25 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+++...+.++|++..=.+| ...+.|..+|++++++++.
T Consensus 132 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~ 178 (396)
T 2ch1_A 132 LETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIV 178 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 456777776545778877542222 1257899999999999884
No 352
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=23.21 E-value=1.7e+02 Score=21.24 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=29.5
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 97 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~ 97 (112)
.+.+||++.=++++. .....+.+.+||++. ..+-|++.+-+..+ ++||+
T Consensus 66 ~~d~vV~Spgi~~~~--p~~~~a~~~gi~v~~---~~e~~~~~~~~~~~--~IaVT 114 (326)
T 3eag_A 66 KADVYVIGNVAKRGM--DVVEAILNLGLPYIS---GPQWLSENVLHHHW--VLGVA 114 (326)
T ss_dssp CCSEEEECTTCCTTC--HHHHHHHHTTCCEEE---HHHHHHHHTGGGSE--EEEEE
T ss_pred CCCEEEECCCcCCCC--HHHHHHHHcCCcEEe---HHHHHHHHHhcCCC--EEEEE
Confidence 356777766665532 234467789999985 33456664433322 58887
No 353
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=23.21 E-value=1.1e+02 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=24.9
Q ss_pred HHHHHhcCCceEEEEeCCC----CchhhhhHHHHHHhCCCcEE
Q 033719 34 VLRSLRSSKGKLILLSNNC----PPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~----s~~~~~~i~~~c~~~~Ip~i 72 (112)
..+.+....+.+|.++.|- .++....+..+++.+++++-
T Consensus 72 l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p 114 (183)
T 2obi_A 72 LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFD 114 (183)
T ss_dssp HHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSE
T ss_pred HHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCce
Confidence 3444444447777787763 23456677788888887665
No 354
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=23.13 E-value=1.1e+02 Score=22.62 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=30.1
Q ss_pred HHHHHHHHhcC---CceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS---KGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g---ka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.++.. +.++|++..-.++. -.+.|..+|++++++++.
T Consensus 180 ~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~ 229 (427)
T 2w8t_A 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLV 229 (427)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 35566677652 67888886543332 257889999999999984
No 355
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=23.11 E-value=2e+02 Score=21.10 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=25.6
Q ss_pred ceecHHHHHHH----HhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 27 YTLGYKTVLRS----LRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 27 lv~G~~~v~ka----i~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++|.-..+++ .+.|. +.++.+-+|-+. +..+|+.++||+..
T Consensus 96 l~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~ 143 (286)
T 3n0v_A 96 MVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD-----LEPLAHWHKIPYYH 143 (286)
T ss_dssp EESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST-----THHHHHHTTCCEEE
T ss_pred EEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEE
Confidence 34555444444 45564 566666666543 23468999999984
No 356
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=23.10 E-value=2e+02 Score=20.17 Aligned_cols=54 Identities=6% Similarity=-0.128 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCceEEEEeCCC-CchhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 32 KTVLRSLRSSKGKLILLSNNC-PPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~-s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
+++..++..|--.+++.++.. +|.....+...++++++++..-+.|.+|.-++.
T Consensus 92 ~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~ 146 (229)
T 3q58_A 92 QDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCH 146 (229)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 467777777766556666653 566777788888888888875567888776665
No 357
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=23.10 E-value=1e+02 Score=22.30 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCceEEEEeCCCC-------c-hhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 32 KTVLRSLRSSKGKLILLSNNCP-------P-LRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s-------~-~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
+.+.+++. .+.++|++..=.+ + +..+.|..+|++++++++. .....++|
T Consensus 173 ~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~-De~~~~~~ 229 (392)
T 3ruy_A 173 EALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVA-DEIQTGLG 229 (392)
T ss_dssp HHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEE-ECTTTTTT
T ss_pred HHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE-eechhCCC
Confidence 45555555 6788888854222 2 2278899999999999995 44433443
No 358
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=23.10 E-value=1.5e+02 Score=23.73 Aligned_cols=47 Identities=9% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTA 84 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a 84 (112)
+.++.|.+-.+.+||++.|+++.... ++..++|.++. .-.+++|-+.
T Consensus 275 ~~le~I~~~g~~lvi~~~~I~~~al~----~L~~~~I~av~-~~~k~~le~i 321 (545)
T 1a6d_A 275 QMVEKIKKSGANVVLCQKGIDDVAQH----YLAKEGIYAVR-RVKKSDMEKL 321 (545)
T ss_dssp HHHHHHHHTTCCEEEESSCBCHHHHH----HHHHHTCEEEC-SCCHHHHHHH
T ss_pred HHHHHHHHhCCCEEEECCCccHHHHH----HHHHCCeeEec-cCCHHHHHHH
Confidence 45556666668899999999875433 33456787775 5566554443
No 359
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=23.05 E-value=75 Score=24.00 Aligned_cols=48 Identities=2% Similarity=-0.178 Sum_probs=30.2
Q ss_pred HHHHHh--cCCceEEEEeCCCCc--------hhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 34 VLRSLR--SSKGKLILLSNNCPP--------LRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 34 v~kai~--~gka~lVilA~D~s~--------~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
+.+.|+ ..+.++|++-.--++ ...+.+..+|+++++.++. ..-...+|
T Consensus 221 le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~-DEv~~g~g 278 (449)
T 2cjg_A 221 ARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF-DEVQTGCG 278 (449)
T ss_dssp HHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEE-ECTTTTTT
T ss_pred HHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEE-eccccCCC
Confidence 555665 256777777442222 2268889999999999994 54333343
No 360
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=23.04 E-value=90 Score=23.50 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=28.2
Q ss_pred HHHHHHHHhc--CCceEEEEeC-------CCCchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS--SKGKLILLSN-------NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~-------D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.++++. .+..++++.+ +.+....+.|..+|+++++.++.
T Consensus 189 ~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~ 240 (448)
T 3meb_A 189 FSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFF 240 (448)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4667777765 3456666532 23344567788899999988874
No 361
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=23.02 E-value=91 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=25.3
Q ss_pred CCCchhhhhHHHHHHhCCCcEEEecC----C--HHHHHhhhCCc
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVHHYNG----N--NVDLGTACGKY 88 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i~~~~----s--k~eLG~a~Gk~ 88 (112)
+.|+.....+..++++++|+++ |.. + -+.|.+..|.+
T Consensus 215 eps~~~l~~l~~~ik~~~v~~i-f~e~~~~~~~~~~ia~~~g~~ 257 (294)
T 3hh8_A 215 EGTPDQISSLIEKLKVIKPSAL-FVESSVDRRPMETVSKDSGIP 257 (294)
T ss_dssp CCCHHHHHHHHHHHHHSCCSCE-EEETTSCSHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-EEeCCCCcHHHHHHHHHhCCc
Confidence 4455677888889999999988 432 1 24566666655
No 362
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=23.02 E-value=1.2e+02 Score=22.42 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHHHHHhc-------CCceEEE-EeCCC-------CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS-------SKGKLIL-LSNNC-------PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-------gka~lVi-lA~D~-------s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++.. .+.++|+ +.+=. ++...+.|..+|++++++++.
T Consensus 169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 226 (425)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3556666665 3677874 43311 123457788899999999885
No 363
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.99 E-value=1.9e+02 Score=19.94 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=22.9
Q ss_pred HHHHHHhcCCceEEEEeC-CCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSN-NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~-D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+...++.-+|+.. +.++ .+...+...+||++.
T Consensus 59 ~~~~~l~~~~vdGiI~~~~~~~~----~~~~~l~~~~iPvV~ 96 (295)
T 3hcw_A 59 EVYKMIKQRMVDAFILLYSKEND----PIKQMLIDESMPFIV 96 (295)
T ss_dssp HHHHHHHTTCCSEEEESCCCTTC----HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhCCcCEEEEcCcccCh----HHHHHHHhCCCCEEE
Confidence 456667777777777653 3322 333445667899985
No 364
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=22.93 E-value=1.6e+02 Score=18.90 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=40.8
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCchHHHhc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 107 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk~~~~~vvaI~d~g~a~~i~~ 107 (112)
.++.+.|+-.|-++-.+.-+..+- .++.++.+..+.+|.-.++-...-- .+-+..++|++.+..
T Consensus 9 ~~~~vaVvd~D~s~~s~~l~~~l~--~~~~~~~~~~s~~ea~~~l~~g~~~-~~l~IP~~Fs~~l~~ 72 (156)
T 3cni_A 9 VGQKVAIVREDTGTIAELAEKALG--NMVDIVYAGSDLKEAEEAVKKEKAP-AIIVIPKGFSQSLES 72 (156)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHH--TSSEEEEEESCHHHHHHHHHHHTCS-EEEEECTTHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHhc--CcEEEEecCCCHHHHHHHHHcCCee-EEEEECcchHHHHhC
Confidence 347788999998886555555443 5554432246888888888554322 455678888887753
No 365
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=22.92 E-value=1.5e+02 Score=20.21 Aligned_cols=16 Identities=25% Similarity=0.034 Sum_probs=13.7
Q ss_pred hhHHHHHHhCCCcEEE
Q 033719 58 SEIEYYAMLAKVGVHH 73 (112)
Q Consensus 58 ~~i~~~c~~~~Ip~i~ 73 (112)
..+...|++++||++.
T Consensus 153 ~~~~~vA~~~~v~~iD 168 (233)
T 1k7c_A 153 EYAELAAEVAGVEYVD 168 (233)
T ss_dssp HHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHhCCeEEe
Confidence 5567899999999996
No 366
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=22.90 E-value=2e+02 Score=20.18 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=22.9
Q ss_pred HHHHHHhcC-CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSS-KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~g-ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++++++.| .+.++.+-+|-+.. .-..+|++++||++.
T Consensus 21 all~~~~~~~~~eI~~Vis~~~~a---~~~~~A~~~gIp~~~ 59 (215)
T 3tqr_A 21 AIIGAIQKGLAIEIRAVISNRADA---YGLKRAQQADIPTHI 59 (215)
T ss_dssp HHHHHHHTTCSEEEEEEEESCTTC---HHHHHHHHTTCCEEE
T ss_pred HHHHHHHcCCCCEEEEEEeCCcch---HHHHHHHHcCCCEEE
Confidence 345555555 35566655653321 124678999999984
No 367
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=22.88 E-value=1.8e+02 Score=23.09 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHH---HHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD---LGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~e---LG~a~Gk~ 88 (112)
..+.|.+-.+.+||.+.|.++... +++..++|.++. .-.+.+ |.+++|-.
T Consensus 268 ~v~kI~~~g~nvvi~~~~I~d~al----~~L~~~gI~av~-~v~k~~leria~~tGa~ 320 (529)
T 3iyg_A 268 RIQKILATGANVILTTGGIDDMCL----KYFVEAGAMAVR-RVLKRDLKRIAKASGAT 320 (529)
T ss_pred HHHHHHhcCCCEEEECCCCCHHHH----HHHHHcCCceec-cCCHHHHHHHHHHhCCe
Confidence 344455556789999999887433 344556777774 444443 44444543
No 368
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=22.74 E-value=49 Score=27.49 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCC
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
...-+||.|.|- ...+..+..+|..+++|++. .++
T Consensus 107 ~~~DlVvda~Dn-~~aR~~ln~~c~~~~iPlI~-~g~ 141 (640)
T 1y8q_B 107 RQFILVMNALDN-RAARNHVNRMCLAADVPLIE-SGT 141 (640)
T ss_dssp TTCSEEEECCSC-HHHHHHHHHHHHHHTCCEEE-EEE
T ss_pred cCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEE-EEE
Confidence 347889998885 45788899999999999994 543
No 369
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=22.71 E-value=92 Score=23.19 Aligned_cols=49 Identities=6% Similarity=0.020 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCceEEEEeCC--------CCchhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 32 KTVLRSLRSSKGKLILLSNN--------CPPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D--------~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
+.+.+++. .+.++|++-.- .++...+.+..+|++++++++. ......+|
T Consensus 192 ~~le~~i~-~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~-Dev~~g~~ 248 (420)
T 2pb2_A 192 HAVKAVMD-DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVF-DEVQCGMG 248 (420)
T ss_dssp HHHHHHCC-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEE-ECTTTTTT
T ss_pred HHHHHHhc-cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEE-EcCCcCcc
Confidence 44555554 46778777532 2234568889999999999995 44433343
No 370
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=22.70 E-value=2e+02 Score=21.32 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 85 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~ 85 (112)
+++.+..+..+.+++|-..| +|.+.+-+....++..+..+ .+++.+.|-+.+
T Consensus 14 ~~~~~~a~~~~~~i~~~~g~-~~~vl~aa~~~~~~~~~~~i-LvGd~~~i~~~~ 65 (337)
T 1r5j_A 14 GGLREKILGKNMKIVFPEGN-DERVVRAAARLKFEGLLEPI-ILGQSEEVRNLL 65 (337)
T ss_dssp HHHHHHHTTSCCEEEESCSS-CHHHHHHHHHHHTTTSCEEE-EBSCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEecCC-CHHHHHHHHHHHHcCCCEEE-EECCHHHHHHHH
Confidence 44555555555556666667 56666666555444445555 478988877653
No 371
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=22.67 E-value=1.2e+02 Score=19.35 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCC-cEEEecC-CHHHHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKV-GVHHYNG-NNVDLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~I-p~i~~~~-sk~eLG~a~Gk~ 88 (112)
..+.+|.++.|.. ..+..+++++++ ++-.+.+ ...++ +++|..
T Consensus 78 ~~v~vv~Is~d~~----~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~ 122 (171)
T 2yzh_A 78 EGVDVTVVSMDLP----FAQKRFCESFNIQNVTVASDFRYRDM-EKYGVL 122 (171)
T ss_dssp TTEEEEEEESSCH----HHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCB
T ss_pred CCceEEEEeCCCH----HHHHHHHHHcCCCCeEEeecCccCcH-HHhCCE
Confidence 4578888888743 235566777766 3332233 44567 888864
No 372
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=22.65 E-value=96 Score=23.82 Aligned_cols=42 Identities=17% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc---hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP---LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~---~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.+.+.+.+.++|++ .-.++ .-.+.|..+|++++++++.
T Consensus 182 ~d~le~~i~~~~tklIi~-~~sn~~~~~dl~~i~~ia~~~g~~liv 226 (483)
T 1rv3_A 182 YDRLEENARLFHPKLIIA-GTSCYSRNLDYGRLRKIADENGAYLMA 226 (483)
T ss_dssp HHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhcCCcEEEE-eCCcCCCcCCHHHHHHHHHHcCCEEEE
Confidence 567888887566788887 32222 2247788899999999984
No 373
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=22.65 E-value=1.3e+02 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=18.6
Q ss_pred ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 43 GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 43 a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++.+-+|-+ .....+|++++||++.
T Consensus 39 ~eI~~Vis~~~----a~~~~~A~~~gIp~~~ 65 (215)
T 3da8_A 39 ARVVAVGVDRE----CRAAEIAAEASVPVFT 65 (215)
T ss_dssp EEEEEEEESSC----CHHHHHHHHTTCCEEE
T ss_pred CeEEEEEeCCc----hHHHHHHHHcCCCEEE
Confidence 35565556553 2356789999999995
No 374
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=22.62 E-value=51 Score=22.63 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=22.9
Q ss_pred EEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 45 LILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 45 lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.||.+++.+-.+-++....+++++|||..
T Consensus 6 ~Iimgs~SD~~v~~~a~~~l~~~gi~~ev 34 (159)
T 3rg8_A 6 IILMGSSSDMGHAEKIASELKTFGIEYAI 34 (159)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEECcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 35566666668889999999999999874
No 375
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=22.57 E-value=1.4e+02 Score=23.00 Aligned_cols=49 Identities=10% Similarity=-0.112 Sum_probs=35.7
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCC--c-hh---hhhHHHHHHhCCCcEEE
Q 033719 25 GKYTLGYKTVLRSLRSSKGKLILLSNNCP--P-LR---KSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 25 gklv~G~~~v~kai~~gka~lVilA~D~s--~-~~---~~~i~~~c~~~~Ip~i~ 73 (112)
.+..-|...+...++.|.-+++++..... . .. .+-+.+.|+++++|+..
T Consensus 139 Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~ 193 (371)
T 3qi7_A 139 SAEERGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQ 193 (371)
T ss_dssp CHHHHHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ChHHHHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCcee
Confidence 34445777888889999999999987542 1 12 23467799999999874
No 376
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.56 E-value=1.8e+02 Score=19.88 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=20.7
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+...++.-+|+....++.....+ ..+...+||++.
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~~~~-~~~~~~~iPvV~ 87 (283)
T 2ioy_A 49 NVEDLIQQKVDVLLINPVDSDAVVTAI-KEANSKNIPVIT 87 (283)
T ss_dssp HHHHHHHTTCSEEEECCSSTTTTHHHH-HHHHHTTCCEEE
T ss_pred HHHHHHHcCCCEEEEeCCchhhhHHHH-HHHHHCCCeEEE
Confidence 344455566766666442222222223 345667899984
No 377
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=22.56 E-value=1.1e+02 Score=18.27 Aligned_cols=9 Identities=11% Similarity=-0.027 Sum_probs=5.1
Q ss_pred HhCCCcEEE
Q 033719 65 MLAKVGVHH 73 (112)
Q Consensus 65 ~~~~Ip~i~ 73 (112)
++.+|||..
T Consensus 37 ~~~~i~y~~ 45 (99)
T 3qmx_A 37 KRKGVEFQE 45 (99)
T ss_dssp HHHTCCCEE
T ss_pred HHCCCCCEE
Confidence 445666654
No 378
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=22.47 E-value=63 Score=23.92 Aligned_cols=51 Identities=2% Similarity=-0.079 Sum_probs=31.9
Q ss_pred HHHHHHHHhc---CCceEEEEeCCCC--------chhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 033719 31 YKTVLRSLRS---SKGKLILLSNNCP--------PLRKSEIEYYAMLAKVGVHHYNGNNVDLG 82 (112)
Q Consensus 31 ~~~v~kai~~---gka~lVilA~D~s--------~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG 82 (112)
.+.+.+.+++ ++.++|++-..-+ +...+.|..+|++++++++. .....++|
T Consensus 189 ~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~-DEv~~~~g 250 (433)
T 1zod_A 189 LDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL-DEAQTGVG 250 (433)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE-ECTTTTTT
T ss_pred HHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE-eccccCCC
Confidence 4566667764 5666777643211 22368889999999999984 44333343
No 379
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=22.35 E-value=63 Score=24.58 Aligned_cols=33 Identities=6% Similarity=-0.001 Sum_probs=22.2
Q ss_pred eEEEEeCCCCc---------------hhh---hhHHHHHHhCCCcEEEecC
Q 033719 44 KLILLSNNCPP---------------LRK---SEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 44 ~lVilA~D~s~---------------~~~---~~i~~~c~~~~Ip~i~~~~ 76 (112)
.++|+|.|-.. ..- ..+..+|.+.++|++.+.+
T Consensus 132 ~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvD 182 (339)
T 2f9y_A 132 PVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFID 182 (339)
T ss_dssp EEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 56788888542 222 3455689999999997433
No 380
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=22.31 E-value=1.9e+02 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCceEEEEeCCCC
Q 033719 32 KTVLRSLRSSKGKLILLSNNCP 53 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s 53 (112)
+++.+.+...++-+||+|.|.-
T Consensus 30 ~~~~~~~~~~~~D~vl~~GDl~ 51 (333)
T 1ii7_A 30 KNALEIAVQENVDFILIAGDLF 51 (333)
T ss_dssp HHHHHHHHHTTCSEEEEESCSB
T ss_pred HHHHHHHHhcCCCEEEECCCcC
Confidence 3455566677899999999974
No 381
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=22.14 E-value=9.8 Score=26.51 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=34.5
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCCc-hhhhhHHHHHH-h--CCCcEEEecCCHHHHHhhhC
Q 033719 30 GYKTVLRSLRSSKGKLILLSNNCPP-LRKSEIEYYAM-L--AKVGVHHYNGNNVDLGTACG 86 (112)
Q Consensus 30 G~~~v~kai~~gka~lVilA~D~s~-~~~~~i~~~c~-~--~~Ip~i~~~~sk~eLG~a~G 86 (112)
|+..|.-.|.+|. ||+.+|.++ ....+|...-+ . +.+|++ +.|.+||-.++.
T Consensus 35 Gf~~V~TyI~SGN---vvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~--vrs~~el~~i~~ 90 (183)
T 2hiy_A 35 GLEKVESYINSGN---IFFTSIDSKAQLVEKLETFFAVHYPFIQSFS--LLSLEDFEAELE 90 (183)
T ss_dssp TCEEEEEETTTTE---EEEEECSCHHHHHHHHHHHHHHHCTTCCCCE--EEEHHHHHHHHT
T ss_pred CCccceEEEecCC---EEEecCCCHHHHHHHHHHHHHHhcCCCCCEE--EecHHHHHHHHH
Confidence 5666666777776 444555553 46667765433 3 457776 689999999885
No 382
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=21.94 E-value=76 Score=22.84 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc----hhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP----LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~----~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++..=.+| ...+.|..+|++++++++.
T Consensus 133 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~ 179 (393)
T 2huf_A 133 LDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIV 179 (393)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEE
Confidence 456677776535677777542222 1257899999999999884
No 383
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.90 E-value=1.2e+02 Score=18.57 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=8.2
Q ss_pred HHHHHHhCCCcEEE
Q 033719 60 IEYYAMLAKVGVHH 73 (112)
Q Consensus 60 i~~~c~~~~Ip~i~ 73 (112)
...+-..++|||..
T Consensus 37 ak~~L~~~gi~y~~ 50 (111)
T 3zyw_A 37 MVEILHKHNIQFSS 50 (111)
T ss_dssp HHHHHHHTTCCCEE
T ss_pred HHHHHHHcCCCeEE
Confidence 33344567787764
No 384
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=21.87 E-value=1.1e+02 Score=21.53 Aligned_cols=30 Identities=10% Similarity=-0.072 Sum_probs=15.4
Q ss_pred ceEEEEeCCCCchhhhhHHHHHHhCCCcEE
Q 033719 43 GKLILLSNNCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 43 a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
+.+|++..+.+++....+...|+++++|++
T Consensus 134 ~~~v~~~~~~~~~~~~~~~~~a~~~~~~v~ 163 (304)
T 3ry7_A 134 ADFVVAQLEVPIPAIISAFEIAKAHGVTTV 163 (304)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 444555555554555555555555555544
No 385
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=21.85 E-value=52 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=23.3
Q ss_pred eEEEEeCCCCch--h---hhhHHHHHHhCCCcEEEecCC
Q 033719 44 KLILLSNNCPPL--R---KSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 44 ~lVilA~D~s~~--~---~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.+.|+|++.... . ..++..+|..+++|++.+.++
T Consensus 358 ~Vgvian~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDt 396 (555)
T 3u9r_B 358 PIAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNI 396 (555)
T ss_dssp EEEEEEECSSBCHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEEEeCCccCHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 356788875432 2 255677999999999975443
No 386
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=21.84 E-value=80 Score=24.48 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=26.8
Q ss_pred HHhcCCceEEEEeCCCC---chhh-----hhHHHHHHhCCCcEEE
Q 033719 37 SLRSSKGKLILLSNNCP---PLRK-----SEIEYYAMLAKVGVHH 73 (112)
Q Consensus 37 ai~~gka~lVilA~D~s---~~~~-----~~i~~~c~~~~Ip~i~ 73 (112)
.+++|++-.||+..|.= -++. -.+--.|+.++||++.
T Consensus 251 ~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV 295 (383)
T 2a0u_A 251 LMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYV 295 (383)
T ss_dssp HHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred HhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEE
Confidence 45668899999998852 1222 4456688899999985
No 387
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=21.63 E-value=1e+02 Score=20.01 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=29.7
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCCc---hhhhhHHHHHHhCCCcEEE
Q 033719 29 LGYKTVLRSLRSSKGKLILLSNNCPP---LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~s~---~~~~~i~~~c~~~~Ip~i~ 73 (112)
-|+++.++.++.|++..||+. +.+- +...-+..++..++|.++.
T Consensus 50 p~l~~ll~~~~~g~id~vvv~-~ldRL~R~~~~~l~~~l~~~gv~v~~ 96 (143)
T 3ilx_A 50 KGFLKLLRMILNNEVSRVITA-YPDRLVRFGFEILEEVCKAHNCEIVV 96 (143)
T ss_dssp HHHHHHHHHHHTTCEEEEEES-SHHHHCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEE-eCCcccccHHHHHHHHHHHcCCEEEE
Confidence 467788888888887766653 4432 2334456678888888874
No 388
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=21.62 E-value=61 Score=23.45 Aligned_cols=43 Identities=5% Similarity=-0.039 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++...+.++|++.+=.+|. -.+.|..+|++++++++.
T Consensus 148 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 194 (393)
T 1vjo_A 148 LEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLV 194 (393)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEE
Confidence 4566777765356777776433332 247899999999999884
No 389
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=21.52 E-value=1.3e+02 Score=22.41 Aligned_cols=43 Identities=7% Similarity=-0.223 Sum_probs=29.3
Q ss_pred HHHHHHHHhc--CCceEEEEeCCC--------CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRS--SKGKLILLSNNC--------PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~--gka~lVilA~D~--------s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+.+++ ++.++||+-..- ++...+.|..+|++++++++.
T Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 188 IEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3556667764 456777764331 234478899999999999984
No 390
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.51 E-value=2e+02 Score=19.71 Aligned_cols=38 Identities=5% Similarity=-0.006 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCceEEEEeC-CCCchhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSN-NCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~-D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+..+.+..+++.-+|+.. +.++ .....+...+||++.
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~ 94 (288)
T 3gv0_A 56 VPIRYILETGSADGVIISKIEPND----PRVRFMTERNMPFVT 94 (288)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTC----HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCccEEEEecCCCCc----HHHHHHhhCCCCEEE
Confidence 4455666666666666653 3332 233344567899984
No 391
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=21.46 E-value=1.3e+02 Score=19.31 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCceEEEEeC------CCCchhhhhHHHHHHhCCCcEEEecC-----CHHHHHhhhCCc
Q 033719 32 KTVLRSLRSSKGKLILLSN------NCPPLRKSEIEYYAMLAKVGVHHYNG-----NNVDLGTACGKY 88 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~------D~s~~~~~~i~~~c~~~~Ip~i~~~~-----sk~eLG~a~Gk~ 88 (112)
+.+.+.+..++ ++|... .|+ .. .++..+-...+|||..+.- .+++|-...|.+
T Consensus 26 ~~v~~~i~~~~--Vvvy~ks~~~~~~Cp-~C-~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 26 EKIQRQIAENP--ILLYMKGSPKLPSCG-FS-AQAVQALAACGERFAYVDILQNPDIRAELPKYANWP 89 (135)
T ss_dssp HHHHHHHHHCS--EEEEESBCSSSBSSH-HH-HHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCC--EEEEEEecCCCCCCc-cH-HHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCC
Confidence 44555555554 444433 342 22 2344445667888764322 234666666654
No 392
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=21.42 E-value=1.5e+02 Score=21.88 Aligned_cols=39 Identities=5% Similarity=0.111 Sum_probs=19.8
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhC-CCcEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLA-KVGVH 72 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~-~Ip~i 72 (112)
+.++++.|--.+|+++.-.+.....++...|+++ ++.++
T Consensus 88 ~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li 127 (305)
T 2fp4_A 88 INEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127 (305)
T ss_dssp HHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence 3444455533335555555444344566666666 55544
No 393
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=21.36 E-value=2.1e+02 Score=19.83 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHh---------CCCcEEEecCCHHHHHhhhCCc
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAML---------AKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~---------~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
.+..+.++...+.+|.++.|..+. ...+++. .+.|++ .+...++.++.|..
T Consensus 101 ~~l~~~~~~~gv~vv~Is~D~~~~----~~~~~~~~~~~~~~~~~~fp~l--~D~~~~v~~~ygv~ 160 (240)
T 3qpm_A 101 SDRVHEFRAINTEVVACSVDSQFT----HLAWIITPRKQGGLGPMKIPLL--SDLTHQISKDYGVY 160 (240)
T ss_dssp HHHHHHHHTTTEEEEEEESSCHHH----HHHHHHSCGGGTCCCSCSSCEE--ECTTSHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEECCCHHH----HHHHHHHHHhhcCCCCCceeEE--eCchHHHHHHhCCc
Confidence 344555665568888888876443 3334443 345665 34457899999874
No 394
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=21.32 E-value=1.1e+02 Score=22.69 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=28.2
Q ss_pred HHHHHHHHhcC---CceEEEEe--CC--C----CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSS---KGKLILLS--NN--C----PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~g---ka~lVilA--~D--~----s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++... .+++|++. .+ . ++...+.|..+|++++++++.
T Consensus 160 ~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~ 213 (456)
T 2ez2_A 160 LKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFY 213 (456)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEE
Confidence 35566677543 24777775 22 1 122367889999999999995
No 395
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=21.28 E-value=63 Score=26.29 Aligned_cols=33 Identities=3% Similarity=-0.086 Sum_probs=23.2
Q ss_pred eEEEEeCCCC-------ch---hhhhHHHHHHhCCCcEEEecC
Q 033719 44 KLILLSNNCP-------PL---RKSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 44 ~lVilA~D~s-------~~---~~~~i~~~c~~~~Ip~i~~~~ 76 (112)
.+.|+|+|-. ++ -..++.++|...++|++.+++
T Consensus 348 ~Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~~~iPlv~lvD 390 (548)
T 2bzr_A 348 PVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVD 390 (548)
T ss_dssp EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEECCcccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 4678899832 22 225567799999999997544
No 396
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=21.26 E-value=1.3e+02 Score=18.20 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=25.1
Q ss_pred HHHHHhcCCceEEEEeC------CCCchhhhhHHHHHHhCCCcEEEecC--C---HHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSN------NCPPLRKSEIEYYAMLAKVGVHHYNG--N---NVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~------D~s~~~~~~i~~~c~~~~Ip~i~~~~--s---k~eLG~a~Gk~ 88 (112)
+.+.+..+ +++|... .|+. =++...+-.+++|||..+.- + +++|-...|..
T Consensus 11 v~~~i~~~--~Vvvy~k~t~~~p~Cp~--C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~ 72 (109)
T 3ipz_A 11 LEKLVNSE--KVVLFMKGTRDFPMCGF--SNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWP 72 (109)
T ss_dssp HHHHHTSS--SEEEEESBCSSSBSSHH--HHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCS
T ss_pred HHHHHccC--CEEEEEecCCCCCCChh--HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCC
Confidence 44444443 4555555 3532 23344444567888764321 1 34565555643
No 397
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=21.23 E-value=1.1e+02 Score=22.74 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=27.5
Q ss_pred HHHHHHHhc--CCceEEEEeCCCC--------chhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRS--SKGKLILLSNNCP--------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~--gka~lVilA~D~s--------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.+.+.++. .+..+||+-..-+ +...+.+..+|++++++++.
T Consensus 188 ~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 239 (429)
T 3k28_A 188 ESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIF 239 (429)
T ss_dssp HHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 455566653 3556666554332 22368899999999999984
No 398
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=21.21 E-value=1.3e+02 Score=22.21 Aligned_cols=43 Identities=12% Similarity=-0.042 Sum_probs=27.5
Q ss_pred ceecHHHHH----HHHhcCC--ceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 27 YTLGYKTVL----RSLRSSK--GKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 27 lv~G~~~v~----kai~~gk--a~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++|.-..+ .+.+.|. +.++.+-+|-+++.. .+|+.++||+..
T Consensus 95 l~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~----~~A~~~gIp~~~ 143 (288)
T 3obi_A 95 LVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETF----SGFDFGDIPFYH 143 (288)
T ss_dssp EECSCCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGS----CCTTTTTCCEEE
T ss_pred EEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHH----HHHHHcCCCEEE
Confidence 455554444 4446665 567777777744433 458899999985
No 399
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.19 E-value=1.9e+02 Score=19.82 Aligned_cols=38 Identities=18% Similarity=-0.006 Sum_probs=19.7
Q ss_pred HHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 35 LRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 35 ~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
++.+...++.-+|+... +..........+...+||++.
T Consensus 54 ~~~l~~~~vdgiii~~~-~~~~~~~~~~~~~~~~ipvV~ 91 (303)
T 3d02_A 54 IEDLIARKVDAITIVPN-DANVLEPVFKKARDAGIVVLT 91 (303)
T ss_dssp HHHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEecC-ChHHHHHHHHHHHHCCCeEEE
Confidence 44444455666666543 222222233445567899884
No 400
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.12 E-value=1.6e+02 Score=20.55 Aligned_cols=39 Identities=10% Similarity=0.023 Sum_probs=20.8
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+...++.-+|+..-.+ .........+...+||++.
T Consensus 51 ~i~~~~~~~vdgiIi~~~~~-~~~~~~~~~~~~~giPvV~ 89 (330)
T 3uug_A 51 QIENMVTKGVKVLVIASIDG-TTLSDVLKQAGEQGIKVIA 89 (330)
T ss_dssp HHHHHHHHTCSEEEECCSSG-GGGHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCEEEEEcCCc-hhHHHHHHHHHHCCCCEEE
Confidence 34444444566666554322 2233344456677999985
No 401
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=21.09 E-value=1.7e+02 Score=22.48 Aligned_cols=44 Identities=23% Similarity=0.103 Sum_probs=32.1
Q ss_pred cHHHHHHHHhc-CCceEEEEeCC----CCc----hhhhhHHHHHHh--CCCcEEE
Q 033719 30 GYKTVLRSLRS-SKGKLILLSNN----CPP----LRKSEIEYYAML--AKVGVHH 73 (112)
Q Consensus 30 G~~~v~kai~~-gka~lVilA~D----~s~----~~~~~i~~~c~~--~~Ip~i~ 73 (112)
-.+++.+++++ .+.++|++-+. .+| .-.+.|..+|++ ++++++.
T Consensus 163 d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~liv 217 (427)
T 3hvy_A 163 DINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFV 217 (427)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEE
Confidence 34677888874 57899999883 333 235778889999 8999885
No 402
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=21.08 E-value=1.7e+02 Score=20.41 Aligned_cols=53 Identities=17% Similarity=0.036 Sum_probs=30.5
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHH--h----CCCcEEEecCCHHHHHhhhCCc
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAM--L----AKVGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~--~----~~Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
..+.+++..+.+|.++.|..+...+-+...-+ . .+.|++ .+...++.+++|..
T Consensus 55 l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil--~D~~~~va~~ygv~ 113 (233)
T 2v2g_A 55 LEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPII--ADETRELAVKLGMV 113 (233)
T ss_dssp THHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEE--ECTTCHHHHHTTCE
T ss_pred HHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEE--ECChHHHHHHhCCc
Confidence 34445556689999998864433222221111 2 346776 35556899998863
No 403
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=21.03 E-value=1.4e+02 Score=22.49 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=28.1
Q ss_pred HHHHHHHHh----c-CCceEEEEeCC-C-------CchhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLR----S-SKGKLILLSNN-C-------PPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~----~-gka~lVilA~D-~-------s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+...+++. . .+.++|++-.+ . +....+.|..+|++++++++.
T Consensus 200 ~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 200 VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 355666666 4 37888754322 1 223457888999999999985
No 404
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.03 E-value=59 Score=22.42 Aligned_cols=29 Identities=3% Similarity=-0.093 Sum_probs=22.7
Q ss_pred EEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 45 LILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 45 lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.||.+++.+-.+.++....+++++|||..
T Consensus 7 ~Iimgs~SD~~v~~~a~~~l~~~gi~~ev 35 (163)
T 3ors_A 7 AVIMGSSSDWKIMQESCNMLDYFEIPYEK 35 (163)
T ss_dssp EEEESCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45566666668889999999999999864
No 405
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=21.02 E-value=1.3e+02 Score=18.72 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=31.4
Q ss_pred EEEEeCCCCc--hhhhhHHHHHHhCCCcEEEe-cCCHHHHHhhhCCcccE
Q 033719 45 LILLSNNCPP--LRKSEIEYYAMLAKVGVHHY-NGNNVDLGTACGKYFRV 91 (112)
Q Consensus 45 lVilA~D~s~--~~~~~i~~~c~~~~Ip~i~~-~~sk~eLG~a~Gk~~~~ 91 (112)
.++-+..|++ ..+.-|..++++++|++... +....+|....|...++
T Consensus 33 v~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~~ygv~VP~ 82 (107)
T 2fgx_A 33 VVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTRLYNDRVPV 82 (107)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHHHSTTSCSE
T ss_pred EEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhCCCCce
Confidence 4555557776 45566677888888988643 23456788778876555
No 406
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=20.87 E-value=60 Score=22.55 Aligned_cols=29 Identities=7% Similarity=-0.095 Sum_probs=22.8
Q ss_pred EEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 45 LILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 45 lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.||.+++.+-.+-++....+++++|||..
T Consensus 10 ~IimgS~SD~~v~~~a~~~l~~~gi~~ev 38 (169)
T 3trh_A 10 AILMGSDSDLSTMETAFTELKSLGIPFEA 38 (169)
T ss_dssp EEEESCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECcHHhHHHHHHHHHHHHHcCCCEEE
Confidence 45566666668889999999999999864
No 407
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=20.86 E-value=1.1e+02 Score=21.62 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhCCCcEEE
Q 033719 32 KTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 32 ~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~~Ip~i~ 73 (112)
+++.+++.. .++|++.+=..| ...+.+.++|++++++++.
T Consensus 136 ~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (361)
T 3ftb_A 136 EDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182 (361)
T ss_dssp HHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEE
Confidence 567777766 777777543332 3467788889899999985
No 408
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=20.84 E-value=1.6e+02 Score=22.57 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+++.++|+.+.+++|++.+=.+|. -.+.|..+|++++++++.
T Consensus 189 ~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 189 VGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCI 235 (445)
T ss_dssp HHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 4667777776544888875433332 246788899999999884
No 409
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.83 E-value=1.2e+02 Score=20.75 Aligned_cols=38 Identities=3% Similarity=-0.025 Sum_probs=21.0
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+..+.+...++.-+|+..... ...+...+...+||++.
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~---~~~~~~~~~~~~iPvV~ 92 (291)
T 3egc_A 55 EAVGQFFERRVDGLILAPSEG---EHDYLRTELPKTFPIVA 92 (291)
T ss_dssp HHHHHHHHTTCSEEEECCCSS---CCHHHHHSSCTTSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCCC---ChHHHHHhhccCCCEEE
Confidence 355566666666555544322 12234455667899884
No 410
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=20.82 E-value=2.1e+02 Score=19.58 Aligned_cols=39 Identities=15% Similarity=-0.008 Sum_probs=20.9
Q ss_pred HHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 34 VLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 34 v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.++.+...++.-+|+..... .........+...+||++.
T Consensus 51 ~~~~~~~~~vdgiii~~~~~-~~~~~~~~~~~~~~iPvV~ 89 (309)
T 2fvy_A 51 QIDVLLAKGVKALAINLVDP-AAAGTVIEKARGQNVPVVF 89 (309)
T ss_dssp HHHHHHHTTCSEEEECCSSG-GGHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHcCCCEEEEeCCCc-chhHHHHHHHHHCCCcEEE
Confidence 44555556676666654222 1122233345567899985
No 411
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=20.79 E-value=39 Score=26.75 Aligned_cols=25 Identities=8% Similarity=-0.113 Sum_probs=19.6
Q ss_pred CCCchhhhhHHHHHHhCCCcEEEec
Q 033719 51 NCPPLRKSEIEYYAMLAKVGVHHYN 75 (112)
Q Consensus 51 D~s~~~~~~i~~~c~~~~Ip~i~~~ 75 (112)
|+++.....+...|++.+|||=.+.
T Consensus 376 ~~~~~~~~~l~~~a~~~~Ip~Q~~~ 400 (458)
T 1y7e_A 376 DADAELVSYIRQLLNKNNIAWQVAT 400 (458)
T ss_dssp --CHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 4567788999999999999997543
No 412
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=20.79 E-value=1.3e+02 Score=22.68 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEEecCC
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~~~~s 77 (112)
.+.+.++++. +.++|++.+=.+|- -.+.|..+|++++++++. ..+
T Consensus 156 ~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~liv-De~ 204 (414)
T 3ndn_A 156 LSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVL-DNV 204 (414)
T ss_dssp HHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE-ECT
T ss_pred HHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEE-ECC
Confidence 3556666654 57888875544442 247788999999999995 443
No 413
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.70 E-value=1.2e+02 Score=21.95 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCch----hhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPPL----RKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~~----~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++. .+.++|++..=.+|. ..+.|..+|++++++++.
T Consensus 159 ~~~l~~~l~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 204 (420)
T 1t3i_A 159 LEHFKTLLS-EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLV 204 (420)
T ss_dssp HHHHHHHCC-TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhC-CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEE
Confidence 355666665 357788776543332 257889999999999985
No 414
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=20.66 E-value=1.6e+02 Score=18.67 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCCchhhhhHHHHHHhCCC-cEEEecCC-HHHHHhhhCCc
Q 033719 41 SKGKLILLSNNCPPLRKSEIEYYAMLAKV-GVHHYNGN-NVDLGTACGKY 88 (112)
Q Consensus 41 gka~lVilA~D~s~~~~~~i~~~c~~~~I-p~i~~~~s-k~eLG~a~Gk~ 88 (112)
..+.+|.++.|..+ .+..+++.+++ ++-.+.+. ..++.+++|..
T Consensus 74 ~~v~vv~Is~d~~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~ 119 (165)
T 1q98_A 74 SNTIVLCISADLPF----AQARFCGAEGIENAKTVSTFRNHALHSQLGVD 119 (165)
T ss_dssp TTEEEEEEESSCHH----HHTTCTTTTTCTTEEEEECTTCTHHHHHTTCE
T ss_pred CCCEEEEEeCCCHH----HHHHHHHHcCCCceEEeeccccchHHHHhCce
Confidence 35777777776432 34445566666 45422232 36788888763
No 415
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=20.64 E-value=88 Score=25.93 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=26.5
Q ss_pred CceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 42 KGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 42 ka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
..-+||.+.|--+ ++..+..+|..+++|++.
T Consensus 431 ~~DlVvd~tDn~~-tR~~ln~~c~~~~~PlI~ 461 (615)
T 4gsl_A 431 EHDIIFLLVDSRE-SRWLPSLLSNIENKTVIN 461 (615)
T ss_dssp HCSEEEECCSSGG-GTHHHHHHHHHTTCEEEE
T ss_pred cCCEEEecCCCHH-HHHHHHHHHHHcCCeEEE
Confidence 4789999999654 778899999999999994
No 416
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=20.58 E-value=53 Score=18.15 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 033719 50 NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTA 84 (112)
Q Consensus 50 ~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a 84 (112)
+|.+.-++..+...|+..+.|+ .+.|.+|=.-
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL~~---~G~KadLieR 34 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSV---GGLKNELVQR 34 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCC---CSSHHHHHHH
T ss_pred chHHHCcHHHHHHHHHHcCCCC---CCcHHHHHHH
Confidence 3666677888999999999996 3788887543
No 417
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=20.51 E-value=43 Score=19.40 Aligned_cols=36 Identities=6% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHHHhc---CCceEEEEeCCCCchhhhhHHHHHHhCCCcEE
Q 033719 34 VLRSLRS---SKGKLILLSNNCPPLRKSEIEYYAMLAKVGVH 72 (112)
Q Consensus 34 v~kai~~---gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i 72 (112)
+.+++++ |+ .|.|++.|.. ....|..+|+..+-.+.
T Consensus 23 ~k~al~~l~~G~-~L~V~~dd~~--a~~di~~~~~~~G~~~~ 61 (78)
T 1pav_A 23 LIKAYKQAKVGE-VISVYSTDAG--TKKDAPAWIQKSGQELV 61 (78)
T ss_dssp HHHHHTTSCTTC-CEECCBSSSC--HHHHHHHHHHHHTEEEC
T ss_pred HHHHHHcCCCCC-EEEEEECCcc--HHHHHHHHHHHCCCEEE
Confidence 4555554 43 3777777764 46778899998876665
No 418
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.50 E-value=1.5e+02 Score=17.73 Aligned_cols=29 Identities=14% Similarity=-0.122 Sum_probs=16.4
Q ss_pred HHHHHHhCCCcEEEecCC-----HHHHHhhhCCc
Q 033719 60 IEYYAMLAKVGVHHYNGN-----NVDLGTACGKY 88 (112)
Q Consensus 60 i~~~c~~~~Ip~i~~~~s-----k~eLG~a~Gk~ 88 (112)
+..+-+.++|+|..+.-+ +++|-...|..
T Consensus 36 ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 69 (109)
T 1wik_A 36 ILEILNSTGVEYETFDILEDEEVRQGLKTFSNWP 69 (109)
T ss_dssp HHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCC
Confidence 334445678888753333 24666666743
No 419
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.47 E-value=90 Score=22.30 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCc-------hhhhhHHHHHHhC--CCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCPP-------LRKSEIEYYAMLA--KVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s~-------~~~~~i~~~c~~~--~Ip~i~ 73 (112)
.+++.+++...+.++|++.+=..| ...+++..+|+++ ++.++.
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 456777777656778887532222 2356777789898 898884
No 420
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=20.38 E-value=1.5e+02 Score=19.27 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=28.8
Q ss_pred HHHhcCCce-EEEEeCCCCchhhhhHHHHHHhCC----CcEEEecCCHHHHHhhhCCc
Q 033719 36 RSLRSSKGK-LILLSNNCPPLRKSEIEYYAMLAK----VGVHHYNGNNVDLGTACGKY 88 (112)
Q Consensus 36 kai~~gka~-lVilA~D~s~~~~~~i~~~c~~~~----Ip~i~~~~sk~eLG~a~Gk~ 88 (112)
+.++...+. +|-++.|..+ ....++++++ .|++ .+...+++++.|..
T Consensus 72 ~~~~~~g~~~vv~Is~d~~~----~~~~~~~~~~~~~~fp~l--~D~~~~~~~~ygv~ 123 (171)
T 2pwj_A 72 DKFKAKGVDSVICVAINDPY----TVNAWAEKIQAKDAIEFY--GDFDGSFHKSLELT 123 (171)
T ss_dssp HHHHHTTCSEEEEEESSCHH----HHHHHHHHTTCTTTSEEE--ECTTCHHHHHHTCE
T ss_pred HHHHHCCCCEEEEEeCCCHH----HHHHHHHHhCCCCceEEE--ECCccHHHHHhCCc
Confidence 344444577 8888887432 3455666665 5655 35567788888764
No 421
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=20.36 E-value=57 Score=22.10 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=11.2
Q ss_pred ceEEEEeCCCCchhh
Q 033719 43 GKLILLSNNCPPLRK 57 (112)
Q Consensus 43 a~lVilA~D~s~~~~ 57 (112)
-.|+|+|.|.+.+..
T Consensus 54 ~pLlIIAedvegeaL 68 (145)
T 1srv_A 54 KPLLIIAEDVEGEAL 68 (145)
T ss_dssp CCEEEEESEECHHHH
T ss_pred CCEEEEecccchhhh
Confidence 358999999887543
No 422
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=20.30 E-value=1.7e+02 Score=23.45 Aligned_cols=47 Identities=6% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTA 84 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a 84 (112)
+.++.|.+-.+.+||.+.|+++... +++..++|.++. .-.+++|-+.
T Consensus 278 ~~le~I~~~g~~lvi~~~~I~~~al----~~L~~~~I~av~-~~~k~~le~i 324 (548)
T 1q3q_A 278 DMVDHIAQTGANVVFVQKGIDDLAQ----HYLAKYGIMAVR-RVKKSDMEKL 324 (548)
T ss_dssp HHHHHHHHHTCCEEEESSCBCHHHH----HHHHHTTCEEEC-SCCHHHHHHH
T ss_pred HHHHHHHHhCcCEEEEcCCcCHHHH----HHHHHCCcEEEc-cCCHHHHHHH
Confidence 4455555556789999999987543 344557888885 6666655433
No 423
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=20.22 E-value=1.4e+02 Score=22.85 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCceEEEEeC--------CCCchhhhhHHHHHHh--CCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSN--------NCPPLRKSEIEYYAML--AKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~--------D~s~~~~~~i~~~c~~--~~Ip~i~ 73 (112)
.+.+.+++. .+.++|++-. +.+..-.+.|..+|++ ++++++.
T Consensus 155 ~e~l~~~l~-~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~liv 206 (431)
T 3ht4_A 155 FEAVAAAIH-SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFV 206 (431)
T ss_dssp HHHHHHHCC-TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHhhcC-CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 455666665 4678888875 3334456888899999 9999985
No 424
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=20.21 E-value=1.4e+02 Score=21.35 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCC-------chhhhhHHHHHHhCCCcEEE
Q 033719 31 YKTVLRSLRSSKGKLILLSNNCP-------PLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~gka~lVilA~D~s-------~~~~~~i~~~c~~~~Ip~i~ 73 (112)
.+.+.+++. .+.++|++.+=.+ +...+.|..+|++++++++.
T Consensus 144 ~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 144 LEKLRQLIR-PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp HHHHHHHCC-TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHhhc-cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 355666664 4677777753222 23378888999999999985
No 425
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=1.4e+02 Score=18.07 Aligned_cols=42 Identities=2% Similarity=-0.028 Sum_probs=23.5
Q ss_pred eEEEEeCCCCchhhh-----hHHHHHHhCCCcEEEecCC-----HHHHHhhh
Q 033719 44 KLILLSNNCPPLRKS-----EIEYYAMLAKVGVHHYNGN-----NVDLGTAC 85 (112)
Q Consensus 44 ~lVilA~D~s~~~~~-----~i~~~c~~~~Ip~i~~~~s-----k~eLG~a~ 85 (112)
+++|.....-+.... ++..+.+.++|||..+.-+ +++|-..+
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 455555554454442 5666667788888643222 24566665
No 426
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=20.17 E-value=1.2e+02 Score=19.81 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=29.9
Q ss_pred ecHHHHHHHHhcCC--ceEEEEeCCCCchhh-----hhHHHHHHhCCCcEEEecCC
Q 033719 29 LGYKTVLRSLRSSK--GKLILLSNNCPPLRK-----SEIEYYAMLAKVGVHHYNGN 77 (112)
Q Consensus 29 ~G~~~v~kai~~gk--a~lVilA~D~s~~~~-----~~i~~~c~~~~Ip~i~~~~s 77 (112)
-|+.+.++.++.|+ +..||+ .+.+--.+ -.+...+..++|.++. ...
T Consensus 60 p~l~~ll~~~~~g~~~~d~lvv-~~ldRl~R~~~~~~~~~~~l~~~gv~l~~-~~~ 113 (167)
T 3guv_A 60 IQFNRMMEDIKSGKDGVSFVLV-FKLSRFARNAADVLSTLQIMQDYGVNLIC-VED 113 (167)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEE-SCGGGTCSSHHHHHHHHHHHHHTTCEEEE-TTT
T ss_pred HHHHHHHHHHHcCCCCccEEEE-EeCchhcCCHHHHHHHHHHHHHCCCEEEE-eeC
Confidence 36778899999998 655544 35543222 2233457889999984 544
No 427
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=20.15 E-value=2e+02 Score=22.05 Aligned_cols=43 Identities=7% Similarity=-0.008 Sum_probs=31.4
Q ss_pred HHHHHHHHhc-CCceEEEEeCC----CCc----hhhhhHHHHHHh--CCCcEEE
Q 033719 31 YKTVLRSLRS-SKGKLILLSNN----CPP----LRKSEIEYYAML--AKVGVHH 73 (112)
Q Consensus 31 ~~~v~kai~~-gka~lVilA~D----~s~----~~~~~i~~~c~~--~~Ip~i~ 73 (112)
.+++.+++++ .+.++|++-+. .+| .-.+.|..+|++ ++++++.
T Consensus 164 ~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~liv 217 (427)
T 3i16_A 164 LEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFV 217 (427)
T ss_dssp HHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEE
Confidence 4677788875 57899998873 333 234777889999 9999985
No 428
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=20.09 E-value=1.2e+02 Score=19.83 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=32.4
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCCc---hhhhhHHHHHHhCCCcEEEecC
Q 033719 29 LGYKTVLRSLRSSKGKLILLSNNCPP---LRKSEIEYYAMLAKVGVHHYNG 76 (112)
Q Consensus 29 ~G~~~v~kai~~gka~lVilA~D~s~---~~~~~i~~~c~~~~Ip~i~~~~ 76 (112)
-|+.+.++.++.|++..||+. +.+- +...-+..+|..++|.++. ..
T Consensus 53 p~l~~ll~~~~~g~id~vvv~-~ldRL~R~~~~~l~~~l~~~gv~~~~-~~ 101 (154)
T 3lhk_A 53 KNYKKLLKMVMNRKVEKVIIA-YPDRLTRFGFETLKEFFKSYGTEIVI-IN 101 (154)
T ss_dssp HHHHHHHHHHHTTCEEEEEES-SHHHHCSSCHHHHHHHHHHTTCEEEE-SC
T ss_pred HHHHHHHHHHHcCCCCEEEEE-eCCcccccHHHHHHHHHHHCCCEEEE-Ee
Confidence 467889999999988777664 3332 2334456788899999984 43
No 429
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=20.03 E-value=1.1e+02 Score=19.46 Aligned_cols=46 Identities=9% Similarity=0.056 Sum_probs=27.7
Q ss_pred HhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 033719 38 LRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 87 (112)
Q Consensus 38 i~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~~~~sk~eLG~a~Gk 87 (112)
.+...+.++.++.|..+ .+..+++.+++|+-...+...+++++.|.
T Consensus 60 ~~~~~~~~v~vs~d~~~----~~~~~~~~~~~~~p~l~D~~~~v~~~ygv 105 (157)
T 4g2e_A 60 FNQVNAVVLGISVDPPF----SNKAFKEHNKLNFTILSDYNREVVKKYNV 105 (157)
T ss_dssp GGGCSSEEEEEESSCHH----HHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred ccccCceEeeecccchh----HHHHHHHHcCCcEEEEEcCCcHHHHHcCC
Confidence 34445677777777433 34456677766554223555688888874
No 430
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.01 E-value=2e+02 Score=19.93 Aligned_cols=40 Identities=5% Similarity=0.009 Sum_probs=21.0
Q ss_pred HHHHHHhcCCceEEEEeCCCCchhhhhHHHHHHhCCCcEEE
Q 033719 33 TVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHH 73 (112)
Q Consensus 33 ~v~kai~~gka~lVilA~D~s~~~~~~i~~~c~~~~Ip~i~ 73 (112)
+.++.+...++.-+|+..-.++... .....+.+.+||++.
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~~-~~~~~~~~~~iPvV~ 88 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVLS-NVVKEAKQEGIKVLA 88 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSCH-HHHHHHHTTTCEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCChhhhH-HHHHHHHHCCCeEEE
Confidence 3455555556655555443222222 233445677899884
Done!