Query 033720
Match_columns 112
No_of_seqs 98 out of 100
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q5l_A Chaperone protein DNAK; 14.4 2.2E+02 0.0076 19.2 4.1 31 5-35 80-112 (135)
2 2op6_A Heat shock 70 kDa prote 14.2 2.6E+02 0.0089 18.8 4.5 31 5-35 63-95 (152)
3 2jnz_A PHL P 3 allergen; timot 13.0 62 0.0021 22.1 0.9 37 17-53 70-106 (108)
4 3ott_A Two-component system se 12.1 1.4E+02 0.0049 24.6 2.9 14 16-29 715-728 (758)
5 3r07_C Putative lipoate-protei 11.8 81 0.0028 20.4 1.1 12 6-17 29-40 (91)
6 3v9f_A Two-component system se 11.2 1.3E+02 0.0043 25.0 2.3 14 16-29 743-756 (781)
7 2qzg_A Conserved uncharacteriz 10.5 65 0.0022 22.0 0.3 8 12-19 68-75 (94)
8 4a2l_A BT_4663, two-component 10.1 1.4E+02 0.0047 24.8 2.2 13 17-29 750-762 (795)
9 2qsb_A UPF0147 protein TA0600; 10.1 65 0.0022 21.8 0.2 8 12-19 64-71 (89)
10 2q2k_A Hypothetical protein; p 9.3 85 0.0029 20.0 0.5 8 16-23 44-51 (70)
No 1
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=14.44 E-value=2.2e+02 Score=19.22 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=20.6
Q ss_pred eEEEEEEeeCCCCCcCee--EEEEEEcCCCccC
Q 033720 5 EYVEAVKLTGDLNVPAGE--VTFRAKIGKGSRL 35 (112)
Q Consensus 5 e~LeAvKLTGDpNVPrGe--vTf~A~lg~~~~~ 35 (112)
+.|-..+|+|-|.-|+|+ +..+.+++..+.+
T Consensus 80 ~~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL 112 (135)
T 1q5l_A 80 KSLGQFNLDGINPAPRGMPQIEVTFDIDADGIL 112 (135)
T ss_dssp EEEEEEECCCCCSCCSSSCCEEEEEEECTTSEE
T ss_pred cEEEEEEEeCCCCCCCceeEEEEEEEECCCCEE
Confidence 457778899999889997 3333335555543
No 2
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=14.21 E-value=2.6e+02 Score=18.85 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=20.2
Q ss_pred eEEEEEEeeCCCCCcCee--EEEEEEcCCCccC
Q 033720 5 EYVEAVKLTGDLNVPAGE--VTFRAKIGKGSRL 35 (112)
Q Consensus 5 e~LeAvKLTGDpNVPrGe--vTf~A~lg~~~~~ 35 (112)
..|-..+|+|-|.-|+|+ |..+.+++..|.+
T Consensus 63 ~~lg~~~l~gipp~p~G~~~I~V~f~id~nGiL 95 (152)
T 2op6_A 63 HKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGIL 95 (152)
T ss_dssp EEEEEEEECCCCCCCTTCSCEEEEEEECTTSCE
T ss_pred CEeEEEEEECCCCCCCCCceEEEEEEECCCcEE
Confidence 457778899999889996 3333335545443
No 3
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=13.00 E-value=62 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCcCeeEEEEEEcCCCccCCCCCCCCCCCCcceEEEe
Q 033720 17 NVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSG 53 (112)
Q Consensus 17 NVPrGevTf~A~lg~~~~~~~~g~~p~e~~~~ar~~g 53 (112)
+.+.|-+|||+..+.+..+....++|.....+..|++
T Consensus 70 ~~L~GplSfRvtts~G~~~va~nViPa~W~~Gqty~s 106 (108)
T 2jnz_A 70 KPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKP 106 (108)
T ss_dssp SCCCSSEEEEEEETTTEEEEEEEEECSSCCTTCEECC
T ss_pred CCCCCCEEEEEEEcCCcEEEECeEECCCCCCCCEEeC
Confidence 3578889999887655443333567777666666665
No 4
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=12.08 E-value=1.4e+02 Score=24.55 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=12.4
Q ss_pred CCCcCeeEEEEEEc
Q 033720 16 LNVPAGEVTFRAKI 29 (112)
Q Consensus 16 pNVPrGevTf~A~l 29 (112)
.|.|.|.++|+++.
T Consensus 715 tnL~pG~Y~f~V~a 728 (758)
T 3ott_A 715 SNLSYGNYQLIISK 728 (758)
T ss_dssp CSCCSEEEEEEEEE
T ss_pred cCCCCccEEEEEEE
Confidence 38999999999994
No 5
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=11.82 E-value=81 Score=20.37 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=9.8
Q ss_pred EEEEEEeeCCCC
Q 033720 6 YVEAVKLTGDLN 17 (112)
Q Consensus 6 ~LeAvKLTGDpN 17 (112)
.++.+|++||=-
T Consensus 29 ~I~~vki~GDFf 40 (91)
T 3r07_C 29 RIKDIHISGDFF 40 (91)
T ss_dssp EEEEEEEEEEBC
T ss_pred EEEEEEEEcccC
Confidence 477899999966
No 6
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=11.15 E-value=1.3e+02 Score=24.98 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=12.4
Q ss_pred CCCcCeeEEEEEEc
Q 033720 16 LNVPAGEVTFRAKI 29 (112)
Q Consensus 16 pNVPrGevTf~A~l 29 (112)
.|.|.|.++|+++.
T Consensus 743 tnL~pG~Y~f~V~a 756 (781)
T 3v9f_A 743 RNIPPGKYEFLVKA 756 (781)
T ss_dssp CSCCSEEEEEEEEE
T ss_pred cCCCCceEEEEEEE
Confidence 48999999999993
No 7
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=10.53 E-value=65 Score=21.99 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=6.4
Q ss_pred eeCCCCCc
Q 033720 12 LTGDLNVP 19 (112)
Q Consensus 12 LTGDpNVP 19 (112)
++-|||+|
T Consensus 68 ISnDPNmP 75 (94)
T 2qzg_A 68 ISEDPNMP 75 (94)
T ss_dssp HTTCTTCC
T ss_pred hhcCCCCC
Confidence 46799998
No 8
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=10.09 E-value=1.4e+02 Score=24.78 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=11.9
Q ss_pred CCcCeeEEEEEEc
Q 033720 17 NVPAGEVTFRAKI 29 (112)
Q Consensus 17 NVPrGevTf~A~l 29 (112)
|.|.|.++|+++.
T Consensus 750 nL~pG~Y~f~V~a 762 (795)
T 4a2l_A 750 NLPQGTYQFLVKA 762 (795)
T ss_dssp CCCSEEEEEEEEE
T ss_pred ccCCCeEEEEEEE
Confidence 8999999999993
No 9
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=10.08 E-value=65 Score=21.76 Aligned_cols=8 Identities=50% Similarity=0.875 Sum_probs=6.4
Q ss_pred eeCCCCCc
Q 033720 12 LTGDLNVP 19 (112)
Q Consensus 12 LTGDpNVP 19 (112)
++-|||+|
T Consensus 64 ISnDPNmP 71 (89)
T 2qsb_A 64 MANDPNVP 71 (89)
T ss_dssp HHTCTTSC
T ss_pred hhcCCCCC
Confidence 45699998
No 10
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=9.29 E-value=85 Score=19.96 Aligned_cols=8 Identities=50% Similarity=0.675 Sum_probs=6.1
Q ss_pred CCCcCeeE
Q 033720 16 LNVPAGEV 23 (112)
Q Consensus 16 pNVPrGev 23 (112)
.|||||.-
T Consensus 44 envprgtk 51 (70)
T 2q2k_A 44 ENVPRGTK 51 (70)
T ss_dssp TTSCTTCH
T ss_pred HcCCCccc
Confidence 49999853
Done!