BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033722
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
PE=1 SV=1
Length = 684
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 6/111 (5%)
Query: 1 MEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADF 60
+EF+EYVEAVKLTGD VPAG+V FRAKIG+ LP++G P+E GV+A Y GQGR+AD
Sbjct: 577 IEFYEYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADP 636
Query: 61 GFRNPKWVDGELLQLNGKVGMGPYVKGAD-LGFLYVVPEQSFLVLFNRLKL 110
GFRNP+WVDGEL+ L+GK YVKG +GF+Y PE F++ FNRL+L
Sbjct: 637 GFRNPRWVDGELVILDGK-----YVKGGPVVGFVYWAPEYHFVMFFNRLRL 682
>sp|A2BD94|FB31B_XENLA F-box only protein 31-B OS=Xenopus laevis GN=fbxo31-b PE=2 SV=1
Length = 523
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+A K+TGD NVPAG+ T + + +LP+
Sbjct: 322 KATKITGDPNVPAGQQTLEVDLTRPVQLPD 351
>sp|Q6GIC4|LEPH_STAAR Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MRSA252) GN=spsA PE=3 SV=1
Length = 174
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGMGPY 84
+ D+ V ASY+ +I DF RN K +DG+++ N V + +
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKKLDGDIIPPNNFVVLNDH 136
>sp|P0A065|LEPH_STAAW Inactive signal peptidase IA OS=Staphylococcus aureus (strain MW2)
GN=spsA PE=3 SV=1
Length = 174
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGMGPY 84
+ D+ V ASY+ +I DF RN K +DG+++ N V + +
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDH 136
>sp|P0A066|LEPH_STAAU Inactive signal peptidase IA OS=Staphylococcus aureus GN=spsA PE=3
SV=1
Length = 174
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGMGPY 84
+ D+ V ASY+ +I DF RN K +DG+++ N V + +
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDH 136
>sp|Q6GAW2|LEPH_STAAS Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MSSA476) GN=spsA PE=3 SV=1
Length = 174
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGMGPY 84
+ D+ V ASY+ +I DF RN K +DG+++ N V + +
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDH 136
>sp|P0A064|LEPH_STAAN Inactive signal peptidase IA OS=Staphylococcus aureus (strain N315)
GN=spsA PE=3 SV=1
Length = 174
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGMGPY 84
+ D+ V ASY+ +I DF RN K +DG+++ N V + +
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDH 136
>sp|P0A063|LEPH_STAAM Inactive signal peptidase IA OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=spsA PE=3 SV=1
Length = 174
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGMGPY 84
+ D+ V ASY+ +I DF RN K +DG+++ N V + +
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDH 136
>sp|Q5HHC0|LEPH_STAAC Inactive signal peptidase IA OS=Staphylococcus aureus (strain COL)
GN=spsA PE=3 SV=1
Length = 174
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|Q5ZXJ2|ALR_LEGPH Alanine racemase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=alr
PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 27 AKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGM 81
A++G G + P +GVVA+ G G + P WV G + + G+V M
Sbjct: 252 AQVGYGGTW--KSDKPSRIGVVAAGYGDGYPRHISEKTPVWVRGREVSIVGRVSM 304
>sp|A5IGG9|ALR_LEGPC Alanine racemase OS=Legionella pneumophila (strain Corby) GN=alr
PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 27 AKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGM 81
A++G G + P +GVVA+ G G + P WV G + + G+V M
Sbjct: 252 AQVGYGGTW--KSDKPSRIGVVAAGYGDGYPRHISEKTPVWVRGREVSIVGRVSM 304
>sp|Q5X709|ALR_LEGPA Alanine racemase OS=Legionella pneumophila (strain Paris) GN=alr
PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 27 AKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGM 81
A++G G + P +GVVA+ G G + P WV G + + G+V M
Sbjct: 252 AQVGYGGTW--KSDKPSRIGVVAAGYGDGYPRHISEKTPVWVRGREVSIVGRVSM 304
>sp|Q0D2D2|FBX31_XENTR F-box only protein 31 OS=Xenopus tropicalis GN=fbxo31 PE=2 SV=1
Length = 551
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+ K+TGD NVPAG+ T + + +LP+
Sbjct: 350 KVTKITGDPNVPAGQQTLEVDLTRPVQLPD 379
>sp|P75804|YLII_ECOLI Soluble aldose sugar dehydrogenase YliI OS=Escherichia coli (strain
K12) GN=yliI PE=1 SV=1
Length = 371
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 30 GKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK------WVDGELLQLNGKVGMGP 83
GK RL ++G+ PD+ + + I +G RNP+ W + L +G G G
Sbjct: 181 GKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRG-GD 239
Query: 84 YVKGADLGFLYVVPEQSFLVLFNRLKLPD 112
+ G Y P ++ + ++ K+P+
Sbjct: 240 EINIPQKGKNYGWPLATWGINYSGFKIPE 268
>sp|Q5WYG1|ALR_LEGPL Alanine racemase OS=Legionella pneumophila (strain Lens) GN=alr
PE=3 SV=1
Length = 357
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 27 AKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGM 81
A++G G + P +G+VA+ G G + P WV G + + G+V M
Sbjct: 252 AQVGYGGTW--KSDKPSRIGIVAAGYGDGYPRHISEKTPVWVRGREVSIVGRVSM 304
>sp|A2RRT3|FB31A_XENLA F-box only protein 31-A OS=Xenopus laevis GN=fbxo31-a PE=2 SV=1
Length = 519
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+ K+TGD NVPAG+ T + + +LP+
Sbjct: 317 KVTKITGDPNVPAGQQTVEVDLTRPVQLPD 346
>sp|A3QI45|ALR_SHELP Alanine racemase OS=Shewanella loihica (strain ATCC BAA-1088 /
PV-4) GN=alr PE=3 SV=1
Length = 358
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 29 IGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVGM 81
+G GS R K +LGVVA G G + P WV+G L+ + G+V M
Sbjct: 253 VGYGSYW--RAKQDTKLGVVAIGYGDGYPRNAPEGTPVWVNGRLVPVVGRVSM 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.145 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,892,251
Number of Sequences: 539616
Number of extensions: 2135044
Number of successful extensions: 3342
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3324
Number of HSP's gapped (non-prelim): 18
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)