Query 033722
Match_columns 112
No_of_seqs 98 out of 100
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 08:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033722.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033722hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dkza2 b.130.1.1 (A:389-506) 40.5 12 0.00087 23.9 3.3 33 3-35 62-96 (118)
2 d2g6ba1 c.37.1.8 (A:58-227) Ra 29.9 15 0.0011 23.0 2.3 25 2-28 1-25 (170)
3 d1nkga3 b.30.5.10 (A:1-250) Rh 22.1 1E+02 0.0075 22.5 6.1 68 8-80 93-170 (250)
4 d1to4a_ b.1.8.1 (A:) Cu,Zn sup 19.6 30 0.0022 22.9 2.4 21 7-28 4-25 (156)
5 d1yuwa1 b.130.1.1 (A:385-543) 16.3 65 0.0047 21.2 3.5 31 5-35 70-102 (159)
6 d1jmxa3 b.1.18.14 (A:282-363) 15.5 56 0.0041 19.5 2.8 19 10-28 53-71 (82)
7 d1szba1 b.23.1.1 (A:3-123) Man 15.3 1.1E+02 0.0079 17.7 5.5 24 88-111 26-50 (121)
8 d1nkga1 b.3.1.2 (A:251-337) Rh 14.9 52 0.0038 19.1 2.5 15 16-30 47-62 (87)
9 d1vlpa1 d.41.2.2 (A:1-149) Nic 14.5 2.6 0.00019 28.7 -4.4 24 2-28 83-106 (149)
10 d1u00a2 b.130.1.1 (A:389-503) 14.5 74 0.0054 19.7 3.3 32 4-35 60-93 (115)
No 1
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=40.48 E-value=12 Score=23.94 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=23.4
Q ss_pred eeeEEEEEEeeCCCCCcCeeE--EEEEEcCCCccC
Q 033722 3 FFEYVEAVKLTGDLNVPAGEV--TFRAKIGKGSRL 35 (112)
Q Consensus 3 ~~e~LeAvKLTGDpNVPrGev--Tf~A~lg~~~~~ 35 (112)
..+.|-...|+|.|+-|+|+. -.+-.++..+.+
T Consensus 62 ~n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL 96 (118)
T d1dkza2 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGIL 96 (118)
T ss_dssp GSEEEEEEEEECCCSCCTTCSCEEEEEEECTTCCE
T ss_pred CceEEEEEEEcCCccCCCCCcEEEEEEEecCCCeE
Confidence 346788999999999999973 333335555554
No 2
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.92 E-value=15 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=20.3
Q ss_pred ceeeEEEEEEeeCCCCCcCeeEEEEEE
Q 033722 2 EFFEYVEAVKLTGDLNVPAGEVTFRAK 28 (112)
Q Consensus 2 ~~~e~LeAvKLTGDpNVPrGevTf~A~ 28 (112)
+||+++--|-+-||+|| |+=|+.-.
T Consensus 1 ~~~d~~fKi~vvG~~~v--GKTsli~~ 25 (170)
T d2g6ba1 1 DFYDVAFKVMLVGDSGV--GKTCLLVR 25 (170)
T ss_dssp CCCSEEEEEEEECSTTS--SHHHHHHH
T ss_pred CCCceEEEEEEECCCCc--CHHHHHHH
Confidence 68999999999999997 66666544
No 3
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=22.07 E-value=1e+02 Score=22.46 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=44.5
Q ss_pred EEEEeeCCCCCcCeeEEEEEEcCCCccCCCCCCCCC-CCC--c------ce-EEEeeeEEcCCCCCCCCeeeeEEEEEcC
Q 033722 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPD-ELG--V------VA-SYSGQGRIADFGFRNPKWVDGELLQLNG 77 (112)
Q Consensus 8 eAvKLTGDpNVPrGevTf~A~lg~~~~~~~~g~~p~-e~~--~------~a-r~~g~G~VA~~GF~~p~~i~~~Lilis~ 77 (112)
.|+-.|.||.| ||.-|+|+|... .+|+. .|+ +.. . +. .+.--||-...=|.+.|+||-+...+++
T Consensus 93 maT~~~aepsv--GelRfIaRL~~~-~lPn~--~p~~dvs~t~~~taIEgsDVF~vdG~TrSKfYSs~R~IDd~~~~vsg 167 (250)
T d1nkga3 93 MATYITAEPSI--GELRFIARLNSD-LLPNE--EPFGDVSTTADGTAIEGSDVFLVGSETRSKFYSSERFIDDQRHCIAG 167 (250)
T ss_dssp EEEEESSCCTT--SCEEEEEEECTT-TCCEE--ETTGGGGCCTTCEEEETTTEEEETTEEEEGGGGCCBGGGCSEEEEEC
T ss_pred EEeccCCCCCc--cceeEEEecccc-cCCCC--CCCccccccCCCcEEecccEEeECCEEehhhccccceecccEEEEec
Confidence 57778999998 999999998643 22210 110 000 0 00 1222677777788899999999998887
Q ss_pred CcC
Q 033722 78 KVG 80 (112)
Q Consensus 78 d~~ 80 (112)
+..
T Consensus 168 ~~v 170 (250)
T d1nkga3 168 DAH 170 (250)
T ss_dssp SSC
T ss_pred CCe
Confidence 763
No 4
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=19.59 E-value=30 Score=22.94 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=15.6
Q ss_pred EEEE-EeeCCCCCcCeeEEEEEE
Q 033722 7 VEAV-KLTGDLNVPAGEVTFRAK 28 (112)
Q Consensus 7 LeAv-KLTGDpNVPrGevTf~A~ 28 (112)
+.|| .|+|+.+| +|.|+|+-.
T Consensus 4 ~~Ava~~~g~~~v-~G~v~F~Q~ 25 (156)
T d1to4a_ 4 MKAVCVMTGTAGV-KGVVKFTQE 25 (156)
T ss_dssp CEEEEEEBCSSSC-EEEEEEEES
T ss_pred eEEEEEEcCCCCc-EEEEEEEEE
Confidence 4566 67888888 599999754
No 5
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.28 E-value=65 Score=21.16 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=21.6
Q ss_pred eEEEEEEeeCCCCCcCeeEEEEEE--cCCCccC
Q 033722 5 EYVEAVKLTGDLNVPAGEVTFRAK--IGKGSRL 35 (112)
Q Consensus 5 e~LeAvKLTGDpNVPrGevTf~A~--lg~~~~~ 35 (112)
..|--.+|+|-|.-|||++.+.+. ++..|.+
T Consensus 70 ~~lg~f~l~~ip~~~~G~~~I~Vtf~id~nGil 102 (159)
T d1yuwa1 70 NLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 102 (159)
T ss_dssp EEEEEEEEECCCCCSTTCCCEEEEEEECTTCCE
T ss_pred cEEEEEEECCCCcCCCCCceEEEEEEEcCCCeE
Confidence 567788999999999997533333 5545443
No 6
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=15.45 E-value=56 Score=19.52 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=13.9
Q ss_pred EEeeCCCCCcCeeEEEEEE
Q 033722 10 VKLTGDLNVPAGEVTFRAK 28 (112)
Q Consensus 10 vKLTGDpNVPrGevTf~A~ 28 (112)
+|+|=++++|.|+..+++.
T Consensus 53 ~~v~i~~d~p~G~h~vrv~ 71 (82)
T d1jmxa3 53 LKARAAADAKPGQREVAVG 71 (82)
T ss_dssp EEEEECTTCCSEEEEEEET
T ss_pred EEEEECCCCCCCcEEEEEE
Confidence 4667777888888877764
No 7
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.33 E-value=1.1e+02 Score=17.69 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=14.1
Q ss_pred CeeEEEEEec-CCeeEEEEeecCCC
Q 033722 88 ADLGFLYVVP-EQSFLVLFNRLKLP 111 (112)
Q Consensus 88 ~~~gflw~~p-~~~~~~lf~Rl~l~ 111 (112)
.++-|.-.+| .+++.+-|..++|+
T Consensus 26 ~~C~W~I~~p~g~~I~l~f~~fdle 50 (121)
T d1szba1 26 QERRWTLTAPPGYRLRLYFTHFDLE 50 (121)
T ss_dssp CEEEEEEECCTTEEEEEEEEEEECC
T ss_pred CeEEEEEEeCCCceeEEEeeeeeee
Confidence 3455555555 34666677777764
No 8
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=14.91 E-value=52 Score=19.10 Aligned_cols=15 Identities=13% Similarity=-0.073 Sum_probs=12.5
Q ss_pred CCCcCeeEEEEEE-cC
Q 033722 16 LNVPAGEVTFRAK-IG 30 (112)
Q Consensus 16 pNVPrGevTf~A~-lg 30 (112)
+|+|.|.++.++. +|
T Consensus 47 ~~l~~G~Y~l~v~~~G 62 (87)
T d1nkga1 47 PAMKPGTYTMVYYQGE 62 (87)
T ss_dssp CCBCSEEEEEEEEETT
T ss_pred cccCCCCEEEEEEEcc
Confidence 5899999999988 54
No 9
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.50 E-value=2.6 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.523 Sum_probs=19.9
Q ss_pred ceeeEEEEEEeeCCCCCcCeeEEEEEE
Q 033722 2 EFFEYVEAVKLTGDLNVPAGEVTFRAK 28 (112)
Q Consensus 2 ~~~e~LeAvKLTGDpNVPrGevTf~A~ 28 (112)
+|.++|+..|.+|| |.|++++.+.
T Consensus 83 ~fl~~L~~~rF~~d---p~~~v~~~~~ 106 (149)
T d1vlpa1 83 AYIKYISSSNYKLH---PEEQISFTSE 106 (149)
T ss_dssp HHHHHHHSTTCCCC---HHHHEEEEEE
T ss_pred HHHHHHHhCCcCCC---cccceEEecc
Confidence 46778888888999 8899998886
No 10
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=14.46 E-value=74 Score=19.71 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred eeEEEEEEeeCCCCCcCeeEEEEEE--cCCCccC
Q 033722 4 FEYVEAVKLTGDLNVPAGEVTFRAK--IGKGSRL 35 (112)
Q Consensus 4 ~e~LeAvKLTGDpNVPrGevTf~A~--lg~~~~~ 35 (112)
.+.|-..+|+|-|..|+|+..+.+. ++..|.+
T Consensus 60 N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL 93 (115)
T d1u00a2 60 CRSLARFALRGIPALPAGGAHIRVTFQVDADGLL 93 (115)
T ss_dssp SEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCE
T ss_pred ceEeeEEEEeCcccCccccccEEEEEEccCCceE
Confidence 4678889999999999998766665 5555544
Done!