Query 033723
Match_columns 112
No_of_seqs 160 out of 1010
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0179 MhpD 2-keto-4-pentenoa 100.0 9.5E-37 2.1E-41 234.3 9.7 100 9-108 53-154 (266)
2 TIGR02303 HpaG-C-term 4-hydrox 100.0 4.2E-36 9.1E-41 228.3 10.1 96 14-109 41-136 (245)
3 KOG1535 Predicted fumarylaceto 100.0 5.1E-36 1.1E-40 221.1 9.1 105 7-111 4-108 (217)
4 PRK10691 hypothetical protein; 100.0 2.8E-33 6.1E-38 209.7 10.9 96 15-110 16-111 (219)
5 PRK15203 4-hydroxyphenylacetat 100.0 4.9E-32 1.1E-36 219.6 10.8 100 10-109 217-316 (429)
6 PRK15203 4-hydroxyphenylacetat 100.0 4.3E-31 9.3E-36 214.1 9.5 93 15-108 2-102 (429)
7 TIGR02305 HpaG-N-term 4-hydrox 100.0 2.1E-28 4.5E-33 181.3 9.9 93 16-108 1-101 (205)
8 PRK12764 hypothetical protein; 100.0 1.4E-28 3.1E-33 202.5 10.0 103 7-110 13-115 (500)
9 PLN02856 fumarylacetoacetase 99.9 4E-26 8.6E-31 184.6 8.4 94 14-108 126-248 (424)
10 PF01557 FAA_hydrolase: Fumary 99.9 2.2E-24 4.8E-29 160.1 8.2 94 17-110 1-103 (218)
11 TIGR01266 fum_ac_acetase fumar 99.9 3.3E-24 7.2E-29 173.1 7.4 95 15-109 117-241 (415)
12 KOG2843 Fumarylacetoacetase [C 99.3 1.8E-12 3.9E-17 101.1 3.1 70 39-108 155-242 (420)
13 TIGR03220 catechol_dmpE 2-oxop 98.5 5.9E-07 1.3E-11 68.7 7.7 87 19-109 55-146 (255)
14 COG3970 Fumarylacetoacetate (F 97.9 1.1E-05 2.5E-10 63.7 3.8 61 39-109 168-229 (379)
15 PRK11342 mhpD 2-keto-4-penteno 97.7 0.00015 3.3E-09 55.6 7.5 85 19-107 59-145 (262)
16 TIGR02312 HpaH 2-oxo-hepta-3-e 97.5 0.00072 1.6E-08 52.1 8.2 86 19-108 60-147 (267)
17 COG3802 GguC Uncharacterized p 95.4 0.017 3.8E-07 45.1 3.3 59 39-105 140-201 (333)
18 COG3971 2-keto-4-pentenoate hy 93.3 0.074 1.6E-06 41.3 2.6 79 19-101 60-140 (264)
19 TIGR03218 catechol_dmpH 4-oxal 91.4 2.1 4.5E-05 32.9 8.6 64 39-103 80-145 (263)
20 PF12596 Tnp_P_element_C: 87kD 51.3 2.8 6E-05 28.5 -1.2 15 83-97 73-87 (106)
21 PF08331 DUF1730: Domain of un 50.2 12 0.00027 23.3 1.7 19 9-27 5-23 (78)
22 cd02134 NusA_KH NusA_K homolog 48.9 6.1 0.00013 23.6 0.1 16 69-84 33-48 (61)
23 PF11010 DUF2848: Protein of u 48.2 50 0.0011 24.7 4.9 67 27-108 13-83 (194)
24 cd02414 jag_KH jag_K homology 39.4 15 0.00032 22.8 0.8 20 71-93 34-53 (77)
25 PRK01064 hypothetical protein; 36.6 19 0.00041 22.9 1.0 15 70-84 39-53 (78)
26 PRK04031 DNA primase; Provisio 28.8 38 0.00082 28.1 1.8 17 96-112 36-52 (408)
27 cd02409 KH-II KH-II (K homolo 26.9 25 0.00055 20.0 0.4 21 71-94 35-55 (68)
28 PRK08406 transcription elongat 23.0 21 0.00045 25.0 -0.6 25 69-96 107-131 (140)
29 cd01666 TGS_DRG_C TGS_DRG_C: 22.8 78 0.0017 19.8 2.0 24 42-65 4-27 (75)
30 PF02041 Auxin_BP: Auxin bindi 21.9 82 0.0018 22.9 2.2 49 51-111 95-149 (167)
No 1
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.5e-37 Score=234.34 Aligned_cols=100 Identities=45% Similarity=0.773 Sum_probs=95.0
Q ss_pred hhhccCCCcEEEEccCcHHHHHHhCCC--CCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723 9 QKLIQAGTKIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (112)
Q Consensus 9 ~~~l~~~~ki~~vg~NY~~h~~e~~~~--~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~ 86 (112)
..++++++||||+|.||++|++||+.. .|+.|++|+|+++++++++++|.+|+.+.++|||+||||||||.+|+|+++
T Consensus 53 ~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v~~e 132 (266)
T COG0179 53 LAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDVSVE 132 (266)
T ss_pred ccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCCCHH
Confidence 455567799999999999999999875 789999999999999999999999999999999999999999999999999
Q ss_pred cHhhhhceEEEEeecchHhHHh
Q 033723 87 TAMDYVGGYAVALDMTAREIQS 108 (112)
Q Consensus 87 ~A~~~I~Gyti~nD~TaRd~q~ 108 (112)
+|++||+|||++||+|+||+|.
T Consensus 133 ~A~d~I~GYti~nD~T~Rd~Q~ 154 (266)
T COG0179 133 DALDYIAGYTIGNDVTARDLQM 154 (266)
T ss_pred HHHhhheEEeeeeecchhcchh
Confidence 9999999999999999999994
No 2
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=4.2e-36 Score=228.28 Aligned_cols=96 Identities=42% Similarity=0.659 Sum_probs=92.6
Q ss_pred CCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhc
Q 033723 14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVG 93 (112)
Q Consensus 14 ~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~ 93 (112)
+|+||+|+|.||++|++|++.+.|+.|++|+|+++++++++++|.+|.....+|||+||++||||.++++++++|++||+
T Consensus 41 ~p~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~v~~~~A~~~I~ 120 (245)
T TIGR02303 41 EPGTIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKNVKREDAMDYVL 120 (245)
T ss_pred CCCeEEEEeCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCCCCHHHHhhhee
Confidence 36899999999999999999888999999999999999999999999998899999999999999999999999999999
Q ss_pred eEEEEeecchHhHHhh
Q 033723 94 GYAVALDMTAREIQSS 109 (112)
Q Consensus 94 Gyti~nD~TaRd~q~~ 109 (112)
|||++||+|+||+|++
T Consensus 121 Gytv~nD~T~Rd~q~~ 136 (245)
T TIGR02303 121 GYTIANDYAIRDYLEN 136 (245)
T ss_pred EEEEEeecchHHHHhh
Confidence 9999999999999964
No 3
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=221.05 Aligned_cols=105 Identities=63% Similarity=0.927 Sum_probs=100.8
Q ss_pred HHhhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723 7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (112)
Q Consensus 7 ~~~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~ 86 (112)
-+..++..++||+|+|.||.+|++|++.+.|++|+||+|+.+|+++++++|.+|.....+|||+||++||||.|+++++.
T Consensus 4 ~~~~~~~~~~KIVcVg~NY~dh~~E~~~~~PkeP~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v~~~ 83 (217)
T KOG1535|consen 4 MLLRPLKWPTKIVCVGRNYADHCKELNNPVPKEPFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSVKKK 83 (217)
T ss_pred chhhhhhcCCeEEEecccHHHHHHHhCCCCCCCCeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccCChh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhhhceEEEEeecchHhHHhhhC
Q 033723 87 TAMDYVGGYAVALDMTAREIQSSAK 111 (112)
Q Consensus 87 ~A~~~I~Gyti~nD~TaRd~q~~~k 111 (112)
+||+||+||+++.|+|+||||.++|
T Consensus 84 ~amd~v~Gy~valDmtARd~q~~ak 108 (217)
T KOG1535|consen 84 DAMDYVGGYAVALDMTARDWQDEAK 108 (217)
T ss_pred hcccccccEEEEeeccchhhhhhhh
Confidence 9999999999999999999998865
No 4
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=209.68 Aligned_cols=96 Identities=45% Similarity=0.761 Sum_probs=92.5
Q ss_pred CCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhce
Q 033723 15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG 94 (112)
Q Consensus 15 ~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~G 94 (112)
.+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+...++|||+|||+||||+++++++++|++||+|
T Consensus 16 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~~~V~g 95 (219)
T PRK10691 16 VSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVRKAIAG 95 (219)
T ss_pred CCcEEEEecCHHHHHHHhCCCCCCCCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHhhhheE
Confidence 49999999999999999999889999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEEeecchHhHHhhh
Q 033723 95 YAVALDMTAREIQSSA 110 (112)
Q Consensus 95 yti~nD~TaRd~q~~~ 110 (112)
||++||+|+||+|...
T Consensus 96 yt~~nDvt~r~~q~~~ 111 (219)
T PRK10691 96 YGVALDLTLRDLQGKM 111 (219)
T ss_pred EEEEEEeEhhhhhhhh
Confidence 9999999999999653
No 5
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.97 E-value=4.9e-32 Score=219.59 Aligned_cols=100 Identities=40% Similarity=0.630 Sum_probs=95.1
Q ss_pred hhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHh
Q 033723 10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAM 89 (112)
Q Consensus 10 ~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~ 89 (112)
.++++++||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+.+..+|||+|||+||||+++++++++|+
T Consensus 217 ~p~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~ea~ 296 (429)
T PRK15203 217 TPPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEADAM 296 (429)
T ss_pred cCCCCCCeEEEEcCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHHHh
Confidence 35556799999999999999999988899999999999999999999999999899999999999999999999999999
Q ss_pred hhhceEEEEeecchHhHHhh
Q 033723 90 DYVGGYAVALDMTAREIQSS 109 (112)
Q Consensus 90 ~~I~Gyti~nD~TaRd~q~~ 109 (112)
+||+|||++||+|+||+|.+
T Consensus 297 ~~V~Gy~~~nD~t~rd~q~~ 316 (429)
T PRK15203 297 DYVAGYTVCNDYAIRDYLEN 316 (429)
T ss_pred hheeEEEEEEeccchhhhhh
Confidence 99999999999999999965
No 6
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.97 E-value=4.3e-31 Score=214.09 Aligned_cols=93 Identities=29% Similarity=0.464 Sum_probs=86.7
Q ss_pred CCcEEEEccCcHHHHHHhC--------CCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723 15 GTKIVAVGRNYAAHAKELG--------NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (112)
Q Consensus 15 ~~ki~~vg~NY~~h~~e~~--------~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~ 86 (112)
.+||+|+|+||++|.+|++ .+.|+.|++|+||++++++++++|.+|.. .++|||+||++||||.+++++++
T Consensus 2 ~~ki~~vg~Ny~~~~~~~~~~~~~~~~~~~p~~P~~F~Kp~~al~g~~~~i~~P~~-~~~~~E~EL~vvIGk~~~~v~~~ 80 (429)
T PRK15203 2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREE 80 (429)
T ss_pred CceEEEEeCchHHHHHhhhhhccccccCCCCCCCEEEecCcceeeCCCCcEECCCC-CCceEEEEEEEEECCccCCCCHH
Confidence 3799999999999999864 24589999999999999999999999987 47999999999999999999999
Q ss_pred cHhhhhceEEEEeecchHhHHh
Q 033723 87 TAMDYVGGYAVALDMTAREIQS 108 (112)
Q Consensus 87 ~A~~~I~Gyti~nD~TaRd~q~ 108 (112)
+|++||+|||++||+|+||+|.
T Consensus 81 ~A~~~V~Gyti~nD~t~rd~q~ 102 (429)
T PRK15203 81 DAAEYIAGYALANDVSLPEESF 102 (429)
T ss_pred HHhhheeEEEEEEEeechhhcc
Confidence 9999999999999999999985
No 7
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.95 E-value=2.1e-28 Score=181.33 Aligned_cols=93 Identities=35% Similarity=0.578 Sum_probs=87.7
Q ss_pred CcEEEEccCcHHHHHHhCC--------CCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhc
Q 033723 16 TKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT 87 (112)
Q Consensus 16 ~ki~~vg~NY~~h~~e~~~--------~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~ 87 (112)
+||+|+|.||++|++|++. +.|+.|.+|+|+++++++++++|.+|.....++||+|||+||||.++++++++
T Consensus 1 ~~i~~vg~ny~~h~~~~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~ 80 (205)
T TIGR02305 1 GTVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEE 80 (205)
T ss_pred CcEEEEeCcHHHHHHHhcccccccccCCCCCCCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHH
Confidence 5899999999999999985 46889999999999999999999999987889999999999999999999999
Q ss_pred HhhhhceEEEEeecchHhHHh
Q 033723 88 AMDYVGGYAVALDMTAREIQS 108 (112)
Q Consensus 88 A~~~I~Gyti~nD~TaRd~q~ 108 (112)
|++||+||+++||+|+|+.+.
T Consensus 81 a~~~v~g~~~~~dit~~~~~~ 101 (205)
T TIGR02305 81 ALDYVAGYALVNDVSLPEDSY 101 (205)
T ss_pred HHHhhheeEEeeeeehhhhhc
Confidence 999999999999999998754
No 8
>PRK12764 hypothetical protein; Provisional
Probab=99.95 E-value=1.4e-28 Score=202.50 Aligned_cols=103 Identities=35% Similarity=0.504 Sum_probs=95.8
Q ss_pred HHhhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723 7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (112)
Q Consensus 7 ~~~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~ 86 (112)
.+.+....|+||+|+|+||++|++|++. .|+.|.+|+|+++++++++++|.+|.....+|||+||++||||.+++++++
T Consensus 13 ~~~~~~~~p~kIi~vg~Ny~~ha~e~~~-~p~~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~e 91 (500)
T PRK12764 13 VVAPLLARPGKVIAVHLNYPSRAAQRGR-TPAQPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPE 91 (500)
T ss_pred cccCCCCCCCcEEEECCCCHHHHHHhCC-CCCCCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHH
Confidence 4456667789999999999999999986 488999999999999999999999988888999999999999999999999
Q ss_pred cHhhhhceEEEEeecchHhHHhhh
Q 033723 87 TAMDYVGGYAVALDMTAREIQSSA 110 (112)
Q Consensus 87 ~A~~~I~Gyti~nD~TaRd~q~~~ 110 (112)
+|++||+|||++||+|+||+|...
T Consensus 92 ea~~~I~Gyt~~nDvt~rD~~~~d 115 (500)
T PRK12764 92 DAWSHVAAVTAANDLGVYDLRYAD 115 (500)
T ss_pred HHHhhheEEEEecceeeehhhhhh
Confidence 999999999999999999999754
No 9
>PLN02856 fumarylacetoacetase
Probab=99.93 E-value=4e-26 Score=184.59 Aligned_cols=94 Identities=26% Similarity=0.357 Sum_probs=84.9
Q ss_pred CCCcEEEEccCcHHHHHHhCCC--------CCCC---CEEEecCCCCcccCCCcEeeCCC---------------CCCce
Q 033723 14 AGTKIVAVGRNYAAHAKELGNA--------VPKE---PVLFLKPTSSYLGNGGTIEVPHP---------------LDSLH 67 (112)
Q Consensus 14 ~~~ki~~vg~NY~~h~~e~~~~--------~p~~---P~~f~K~~~a~~g~~~~i~~P~~---------------~~~ld 67 (112)
+++++.|. .||.+|+.+.|.. .|.. |++|.|+++|++++|++|.+|.. +..+|
T Consensus 126 ~~~~~~df-~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lD 204 (424)
T PLN02856 126 VIGDYTDF-FSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLD 204 (424)
T ss_pred ccceEEEE-ecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceE
Confidence 46888898 9999999998642 1333 99999999999999999999973 67899
Q ss_pred eceeEEEEECCC---CCCCChhcHhhhhceEEEEeecchHhHHh
Q 033723 68 HEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQS 108 (112)
Q Consensus 68 ~E~ELavVIGk~---~~~v~~~~A~~~I~Gyti~nD~TaRd~q~ 108 (112)
||+||++||||. |++|++++|++||+|||++||||+||+|.
T Consensus 205 yE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~ 248 (424)
T PLN02856 205 FELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQK 248 (424)
T ss_pred EEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhh
Confidence 999999999997 89999999999999999999999999996
No 10
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=99.91 E-value=2.2e-24 Score=160.07 Aligned_cols=94 Identities=46% Similarity=0.734 Sum_probs=85.2
Q ss_pred cEEEEccCcHHHHHHhCC---CCCC-----CCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCC-Chhc
Q 033723 17 KIVAVGRNYAAHAKELGN---AVPK-----EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV-PETT 87 (112)
Q Consensus 17 ki~~vg~NY~~h~~e~~~---~~p~-----~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v-~~~~ 87 (112)
||+|+|.||.+|+++++. +.|. .|.+|.|+++++.++|++|.+|..+..++||+||+++|||.++++ ++++
T Consensus 1 ~v~~~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~e 80 (218)
T PF01557_consen 1 KVVGVGLNYTSHAEEAGAGDVDEPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEE 80 (218)
T ss_dssp EEEEEESEBHHHHHHTTTTCSSTTSEECECSGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHH
T ss_pred CEEEEeEchHHHHHHhCcCCCCCCccccccCCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHH
Confidence 799999999999999873 3343 889999999999999999999999889999999999999999999 9999
Q ss_pred HhhhhceEEEEeecchHhHHhhh
Q 033723 88 AMDYVGGYAVALDMTAREIQSSA 110 (112)
Q Consensus 88 A~~~I~Gyti~nD~TaRd~q~~~ 110 (112)
|++||+||+++||+|+|++|...
T Consensus 81 a~~~i~g~~~~~d~~~r~~~~~~ 103 (218)
T PF01557_consen 81 ALDAIAGYTPANDVTARDLQWRE 103 (218)
T ss_dssp HGGGEEEEEEEEEEEEHHHHHHH
T ss_pred HHHHhhEEeeecccchhhhhhhh
Confidence 99999999999999999998653
No 11
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=99.90 E-value=3.3e-24 Score=173.11 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=84.1
Q ss_pred CCcE--EEEccCcHHHHHHhCCC-------C----CCCCEEEecCCCCcccCCCcEeeCCC--------------CCCce
Q 033723 15 GTKI--VAVGRNYAAHAKELGNA-------V----PKEPVLFLKPTSSYLGNGGTIEVPHP--------------LDSLH 67 (112)
Q Consensus 15 ~~ki--~~vg~NY~~h~~e~~~~-------~----p~~P~~f~K~~~a~~g~~~~i~~P~~--------------~~~ld 67 (112)
|-+| |....+|.+|+.+.|.- . ...|++|+|+++|++++|++|.+|.. +..+|
T Consensus 117 P~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD 196 (415)
T TIGR01266 117 PAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLD 196 (415)
T ss_pred CccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceE
Confidence 4555 78899999999987521 1 24699999999999999999999974 67899
Q ss_pred eceeEEEEECCC---CCCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723 68 HEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQSS 109 (112)
Q Consensus 68 ~E~ELavVIGk~---~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~ 109 (112)
||+||++||||. |++|++++|++||+|||++||||+||+|..
T Consensus 197 ~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDiQ~w 241 (415)
T TIGR01266 197 MELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDIQAW 241 (415)
T ss_pred EEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhhhhh
Confidence 999999999997 999999999999999999999999999963
No 12
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.8e-12 Score=101.15 Aligned_cols=70 Identities=29% Similarity=0.403 Sum_probs=62.9
Q ss_pred CCEEEecCCCCcccCCCcEeeCC--------------CCCCceeceeEEEEECCC----CCCCChhcHhhhhceEEEEee
Q 033723 39 EPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK----ARDVPETTAMDYVGGYAVALD 100 (112)
Q Consensus 39 ~P~~f~K~~~a~~g~~~~i~~P~--------------~~~~ld~E~ELavVIGk~----~~~v~~~~A~~~I~Gyti~nD 100 (112)
-|+-|....++++-.|.||..|- ....+|+|.|+|+.+|-. |..|+.++|+++|+|+++.||
T Consensus 155 LPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMND 234 (420)
T KOG2843|consen 155 LPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMND 234 (420)
T ss_pred ccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecc
Confidence 59999999999999999999883 146689999999999954 567899999999999999999
Q ss_pred cchHhHHh
Q 033723 101 MTAREIQS 108 (112)
Q Consensus 101 ~TaRd~q~ 108 (112)
||+||+|+
T Consensus 235 WSARDIQk 242 (420)
T KOG2843|consen 235 WSARDIQK 242 (420)
T ss_pred cchhhccc
Confidence 99999996
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=98.49 E-value=5.9e-07 Score=68.70 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcHh---hhhc
Q 033723 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAM---DYVG 93 (112)
Q Consensus 19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A~---~~I~ 93 (112)
|-+|+.-+.-.+.|+.. .|++=.-..+.+..++.++..+... .+++|+||++||||++ +++++++++ ++|+
T Consensus 55 ~K~g~ts~~~~~~~gv~---~P~~g~l~~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~ 130 (255)
T TIGR03220 55 KKIGVTSKAVMNMLGVY---QPDFGYLLDGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVM 130 (255)
T ss_pred EEEecCCHHHHHHhCCC---CCcEEEeeccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhhee
Confidence 44666655555556654 4544333445666778888888764 7999999999999996 689999765 5677
Q ss_pred eEEEEeecchHhHHhh
Q 033723 94 GYAVALDMTAREIQSS 109 (112)
Q Consensus 94 Gyti~nD~TaRd~q~~ 109 (112)
++.-.+|.+.||||..
T Consensus 131 ~~~El~D~r~~~~~~~ 146 (255)
T TIGR03220 131 PCFEIVDSRIRDWKIK 146 (255)
T ss_pred eeEEEcccccccCCCC
Confidence 7777889999999753
No 14
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=63.70 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=52.3
Q ss_pred CCEEEec-CCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhceEEEEeecchHhHHhh
Q 033723 39 EPVLFLK-PTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSS 109 (112)
Q Consensus 39 ~P~~f~K-~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~ 109 (112)
.+-+|+| .+.+-+|+|+.|-+.+.+..-.-|.|+++++...++ |-|||++||+++||+..+
T Consensus 168 daEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlRD~Egr 229 (379)
T COG3970 168 DAEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLRDFEGR 229 (379)
T ss_pred ChhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCcccccccccc
Confidence 3566777 567779999999887777778899999999999998 899999999999998653
No 15
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=97.73 E-value=0.00015 Score=55.59 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=68.0
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCC--CCChhcHhhhhceEE
Q 033723 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGYA 96 (112)
Q Consensus 19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~v~~~~A~~~I~Gyt 96 (112)
|.+|++.+...+.++...|-...+|. +.+..++..+.++.. .....|+||++++||+.. +++++++.++|.++.
T Consensus 59 ~K~G~ts~~~~~~~gv~~P~~g~l~~---~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v~ 134 (262)
T PRK11342 59 RKVGLTHPKVQQQLGVDQPDFGTLFA---DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVL 134 (262)
T ss_pred EEecCCCHHHHHHhCCCCCCcccccc---hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceEe
Confidence 78999999988888887666666665 456677777776554 357889999999999875 689999999999999
Q ss_pred EEeecchHhHH
Q 033723 97 VALDMTAREIQ 107 (112)
Q Consensus 97 i~nD~TaRd~q 107 (112)
.+.++-.+.++
T Consensus 135 paiEivdsr~~ 145 (262)
T PRK11342 135 PALEVVGSRIR 145 (262)
T ss_pred eeEEecCCccc
Confidence 99888765554
No 16
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=97.49 E-value=0.00072 Score=52.14 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=62.6
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcHhhhhceEE
Q 033723 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYA 96 (112)
Q Consensus 19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A~~~I~Gyt 96 (112)
|-+|+.-..--+.++.. .|++=.-..+.+...+..+..+ ...+.-+|+||++++|++. .+.+.++++++|.++.
T Consensus 60 ~KvG~ts~a~q~~~gv~---~P~~g~l~~~~~~~~g~~~~~~-~~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~ 135 (267)
T TIGR02312 60 HKIGLTSRAMQQASNID---EPDYGVLLDDMFFEDGSTIPAD-RFIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVV 135 (267)
T ss_pred EEEecCCHHHHHHcCCC---CCeeEEecCccccCCCCeeccc-cccccccceEEEEEECCCCCCCCCCHHHHHHHhheEE
Confidence 44555554444445543 4554444456667777777764 3345789999999999987 4789999999999999
Q ss_pred EEeecchHhHHh
Q 033723 97 VALDMTAREIQS 108 (112)
Q Consensus 97 i~nD~TaRd~q~ 108 (112)
.+.++..+.++.
T Consensus 136 paiEi~dsr~~~ 147 (267)
T TIGR02312 136 PALEIIDARIER 147 (267)
T ss_pred eeEEEeeccccc
Confidence 999999888764
No 17
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.36 E-value=0.017 Score=45.06 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=46.9
Q ss_pred CCEEEec-CCCCcccCCCcEeeCCCCCCceeceeEE--EEECCCCCCCChhcHhhhhceEEEEeecchHh
Q 033723 39 EPVLFLK-PTSSYLGNGGTIEVPHPLDSLHHEVELA--VVIGQKARDVPETTAMDYVGGYAVALDMTARE 105 (112)
Q Consensus 39 ~P~~f~K-~~~a~~g~~~~i~~P~~~~~ld~E~ELa--vVIGk~~~~v~~~~A~~~I~Gyti~nD~TaRd 105 (112)
+|-+|.| ..+.++.+|.+++.|..+..=--|.||+ .+||.++.- |-.||+++|.+|.--
T Consensus 140 QPEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSDHv 201 (333)
T COG3802 140 QPEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSDHV 201 (333)
T ss_pred CcceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhhhh
Confidence 6877777 5567789999999998876666788886 678888764 678999999998643
No 18
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.26 E-value=0.074 Score=41.33 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=58.9
Q ss_pred EEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCC--CCChhcHhhhhceEE
Q 033723 19 VAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGYA 96 (112)
Q Consensus 19 ~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~v~~~~A~~~I~Gyt 96 (112)
+-+|+.-+.+-+.++...|..=.+|- ......+.+|+.+.... ..+|+||+++++|+.. +++..|+++|+.-+.
T Consensus 60 ~Kvglts~a~q~~~~v~epd~G~lfd---~m~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~ 135 (264)
T COG3971 60 HKVGLTSPAMQQQLGVDEPDYGTLFD---DMAFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVL 135 (264)
T ss_pred eeeccCCHHHHHHcCCCCcchhhhhH---hHHhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhh
Confidence 34688888888888876555444443 33556677777766543 4999999999999855 899999999998777
Q ss_pred EEeec
Q 033723 97 VALDM 101 (112)
Q Consensus 97 i~nD~ 101 (112)
.+..+
T Consensus 136 palEl 140 (264)
T COG3971 136 PALEL 140 (264)
T ss_pred hhhhh
Confidence 66655
No 19
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=91.38 E-value=2.1 Score=32.93 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=44.4
Q ss_pred CCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcHhhhhceEEEEeecch
Q 033723 39 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGYAVALDMTA 103 (112)
Q Consensus 39 ~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A~~~I~Gyti~nD~Ta 103 (112)
.|++=.-..+.+...+..+..... .+.-.|+|+++++|++. .+.+.++..++|..+..+..+-.
T Consensus 80 ~P~~g~l~~~~~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEivd 145 (263)
T TIGR03218 80 TPVFGFLVDYFSVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAVEVID 145 (263)
T ss_pred CCeeeeecccccccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeEEecc
Confidence 444333333444555666655433 34689999999999976 56788999999998888877643
No 20
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=51.28 E-value=2.8 Score=28.46 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.5
Q ss_pred CChhcHhhhhceEEE
Q 033723 83 VPETTAMDYVGGYAV 97 (112)
Q Consensus 83 v~~~~A~~~I~Gyti 97 (112)
.-.++|++||+||.+
T Consensus 73 e~e~d~l~YiaGyVa 87 (106)
T PF12596_consen 73 EIEEDGLEYIAGYVA 87 (106)
T ss_pred hhHHHHHHHHHHHHH
Confidence 367899999999974
No 21
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=50.21 E-value=12 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=16.7
Q ss_pred hhhccCCCcEEEEccCcHH
Q 033723 9 QKLIQAGTKIVAVGRNYAA 27 (112)
Q Consensus 9 ~~~l~~~~ki~~vg~NY~~ 27 (112)
+.+++.+..||++|.||..
T Consensus 5 ~~~~p~arSvIv~a~~Y~~ 23 (78)
T PF08331_consen 5 RKLLPGARSVIVLAFPYYP 23 (78)
T ss_pred HHhCCCCcEEEEEEccCCC
Confidence 4678889999999999987
No 22
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of ribosomal rrn operons. During transcription of many other genes, NusA-induced RNAP pausing provides a mechanism for synchronizing transcription and translation . The N-terminal RNAP-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, S1, KH1 and KH2. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices.
Probab=48.95 E-value=6.1 Score=23.58 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.9
Q ss_pred ceeEEEEECCCCCCCC
Q 033723 69 EVELAVVIGQKARDVP 84 (112)
Q Consensus 69 E~ELavVIGk~~~~v~ 84 (112)
+.+++.+|||.|+||.
T Consensus 33 ~~~~~~aIGk~G~nI~ 48 (61)
T cd02134 33 DDQLGLAIGKGGQNVR 48 (61)
T ss_pred cccceeeECCCCHHHH
Confidence 4689999999999974
No 23
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=48.24 E-value=50 Score=24.69 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHHh---CCCCC-CCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhceEEEEeecc
Q 033723 27 AHAKEL---GNAVP-KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMT 102 (112)
Q Consensus 27 ~h~~e~---~~~~p-~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~Gyti~nD~T 102 (112)
.|++|+ |.++| ..|.+|--.++-+.- .+.|..... .---|+|-+++..+... =.+++.|=|
T Consensus 13 ~HI~EL~~lGVp~Ps~vP~~Y~v~~~lltq-~~~i~v~g~--~tSGE~E~vli~~~g~~------------~v~vgSDHT 77 (194)
T PF11010_consen 13 HHIEELAALGVPPPSSVPLFYRVAPYLLTQ-ADEIEVLGE--DTSGEAEPVLIRHGGEL------------YVGVGSDHT 77 (194)
T ss_pred HHHHHHHHhCCCCCCCCCEEEEechhhCcc-cCeEEeccC--CCCceEEEEEEEECCeE------------EEEecCCCc
Confidence 566665 66655 568888887766554 445555432 33568898777664432 248889999
Q ss_pred hHhHHh
Q 033723 103 AREIQS 108 (112)
Q Consensus 103 aRd~q~ 108 (112)
.|++..
T Consensus 78 DR~lE~ 83 (194)
T PF11010_consen 78 DRKLEA 83 (194)
T ss_pred cchhhh
Confidence 998753
No 24
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=39.41 E-value=15 Score=22.75 Aligned_cols=20 Identities=20% Similarity=0.760 Sum_probs=15.4
Q ss_pred eEEEEECCCCCCCChhcHhhhhc
Q 033723 71 ELAVVIGQKARDVPETTAMDYVG 93 (112)
Q Consensus 71 ELavVIGk~~~~v~~~~A~~~I~ 93 (112)
.++.+|||.|+.+ +|+.|+.
T Consensus 34 ~~g~LIGk~G~tL---~AlQ~L~ 53 (77)
T cd02414 34 DIGLLIGKRGKTL---DALQYLA 53 (77)
T ss_pred CCCeEECCCCccH---HHHHHHH
Confidence 5689999999987 5666654
No 25
>PRK01064 hypothetical protein; Provisional
Probab=36.57 E-value=19 Score=22.92 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=12.7
Q ss_pred eeEEEEECCCCCCCC
Q 033723 70 VELAVVIGQKARDVP 84 (112)
Q Consensus 70 ~ELavVIGk~~~~v~ 84 (112)
..++.+|||.|+++.
T Consensus 39 ~D~g~vIGk~G~~i~ 53 (78)
T PRK01064 39 PDIGKIIGKEGRTIK 53 (78)
T ss_pred ccceEEECCCCccHH
Confidence 457999999999974
No 26
>PRK04031 DNA primase; Provisional
Probab=28.81 E-value=38 Score=28.13 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.5
Q ss_pred EEEeecchHhHHhhhCC
Q 033723 96 AVALDMTAREIQSSAKV 112 (112)
Q Consensus 96 ti~nD~TaRd~q~~~k~ 112 (112)
.+++|+-.||+|+.-|+
T Consensus 36 LLG~elDLReLQ~~gri 52 (408)
T PRK04031 36 LLGDELDLRELQKTGRI 52 (408)
T ss_pred cccccccHHHHHhcCcc
Confidence 58999999999987654
No 27
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional modifiers of mRNA (e.g. hnRNP K). There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In addition to their KH core domain, KH-II proteins have an N-terminal alpha helical extension while KH-I proteins have a C-terminal alpha helical extension.
Probab=26.95 E-value=25 Score=20.04 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=15.3
Q ss_pred eEEEEECCCCCCCChhcHhhhhce
Q 033723 71 ELAVVIGQKARDVPETTAMDYVGG 94 (112)
Q Consensus 71 ELavVIGk~~~~v~~~~A~~~I~G 94 (112)
+.+.+|||.|+++ ++..+..+
T Consensus 35 ~~g~lIGk~G~~l---~~l~~l~~ 55 (68)
T cd02409 35 QPGLVIGKKGQNI---RALQKLLQ 55 (68)
T ss_pred CCceEECCCCccH---HHHHHHHH
Confidence 5899999999987 44444444
No 28
>PRK08406 transcription elongation factor NusA-like protein; Validated
Probab=22.97 E-value=21 Score=25.02 Aligned_cols=25 Identities=8% Similarity=0.244 Sum_probs=18.2
Q ss_pred ceeEEEEECCCCCCCChhcHhhhhceEE
Q 033723 69 EVELAVVIGQKARDVPETTAMDYVGGYA 96 (112)
Q Consensus 69 E~ELavVIGk~~~~v~~~~A~~~I~Gyt 96 (112)
+.+++..|||.|+|+ ++.+++.|+-
T Consensus 107 ~~d~g~aIGK~G~ni---~la~~L~~~~ 131 (140)
T PRK08406 107 PEDKGIAIGKNGKNI---ERAKDLAKRH 131 (140)
T ss_pred ccccchhhCCCCHHH---HHHHHHhCCc
Confidence 678999999999998 4444444443
No 29
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=22.79 E-value=78 Score=19.78 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=18.4
Q ss_pred EEecCCCCcccCCCcEeeCCCCCC
Q 033723 42 LFLKPTSSYLGNGGTIEVPHPLDS 65 (112)
Q Consensus 42 ~f~K~~~a~~g~~~~i~~P~~~~~ 65 (112)
+|+|++..-..-.+++.+|..+.-
T Consensus 4 vytk~~g~~~d~~~~liL~~GaTV 27 (75)
T cd01666 4 VYTKPKGQEPDFDEPVILRRGSTV 27 (75)
T ss_pred EEeCCCCCCCCCCCCEEECCCCCH
Confidence 688888887777788888876543
No 30
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=21.85 E-value=82 Score=22.93 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=28.5
Q ss_pred ccCCCcEeeCCCC-CCc-----eeceeEEEEECCCCCCCChhcHhhhhceEEEEeecchHhHHhhhC
Q 033723 51 LGNGGTIEVPHPL-DSL-----HHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111 (112)
Q Consensus 51 ~g~~~~i~~P~~~-~~l-----d~E~ELavVIGk~~~~v~~~~A~~~I~Gyti~nD~TaRd~q~~~k 111 (112)
+++++.+.+|... .++ .-+..+.|||.|....| .+-.||+....+.++|
T Consensus 95 ~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPvkv------------f~y~dw~~phtaa~l~ 149 (167)
T PF02041_consen 95 IFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPVKV------------FIYDDWSMPHTAAKLK 149 (167)
T ss_dssp E-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS--E------------EEESSTTS-GGG-EEE
T ss_pred ecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCeEE------------EEeccccCcchhhhhc
Confidence 4456667777532 111 34567899999997754 6778999888877665
Done!