Query 033723
Match_columns 112
No_of_seqs 160 out of 1010
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033723.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033723hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nr9a_ d.177.1.1 (A:) Putativ 100.0 2.8E-38 2.1E-42 234.2 7.3 102 9-110 11-112 (221)
2 d1sawa_ d.177.1.1 (A:) FAHD1 ( 100.0 1.7E-37 1.2E-41 229.4 7.0 96 15-110 10-105 (217)
3 d1gtta2 d.177.1.1 (A:214-429) 100.0 3.9E-37 2.8E-41 226.9 6.3 100 10-109 3-103 (216)
4 d1gtta1 d.177.1.1 (A:1-213) 4- 100.0 9.4E-35 6.8E-39 214.2 8.0 94 15-109 2-103 (213)
5 d1nkqa_ d.177.1.1 (A:) Hypothe 100.0 1.6E-34 1.2E-38 218.1 7.0 100 10-110 3-130 (257)
6 d1hyoa2 d.177.1.1 (A:119-416) 99.9 3.1E-28 2.3E-32 186.8 5.3 74 38-111 36-126 (298)
7 d1sv6a_ d.177.1.1 (A:) 2-keto- 97.4 0.00016 1.1E-08 51.5 5.8 92 13-108 51-146 (261)
8 d2gdta1 d.346.1.1 (A:2-116) Ns 15.8 43 0.0031 19.6 2.2 16 38-53 53-68 (115)
9 d1kt1a3 d.26.1.1 (A:139-253) F 13.2 50 0.0036 18.9 2.0 35 38-73 75-110 (115)
10 d1e3ha4 d.52.3.1 (A:579-632) P 11.9 22 0.0016 18.7 0.0 14 72-85 14-27 (54)
No 1
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.8e-38 Score=234.18 Aligned_cols=102 Identities=44% Similarity=0.714 Sum_probs=86.0
Q ss_pred hhhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcH
Q 033723 9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA 88 (112)
Q Consensus 9 ~~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A 88 (112)
+++-.|.+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.++++++++|
T Consensus 11 ~~~~~Pv~kI~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~al~g~~~~I~~p~~~~~ld~E~EL~vvigk~~~~i~~~~A 90 (221)
T d1nr9a_ 11 ALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHV 90 (221)
T ss_dssp CBCSCCCCCEEEESCCBC----------CCCCCEEEECGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHH
T ss_pred CcccCCCccEEEEeccHHHHHHHHCCCCCCCCEEEEECchhhcCCCcccccccccceeeecccEEEEeccccceeecccc
Confidence 33334559999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hhhhceEEEEeecchHhHHhhh
Q 033723 89 MDYVGGYAVALDMTAREIQSSA 110 (112)
Q Consensus 89 ~~~I~Gyti~nD~TaRd~q~~~ 110 (112)
++||+|||++||+|+||+|.++
T Consensus 91 ~~~I~Gyti~ND~T~Rd~q~~~ 112 (221)
T d1nr9a_ 91 RKAIAGYGVALDLTLRDVQGKM 112 (221)
T ss_dssp HHHEEEEEEEECCBCHHHHHHH
T ss_pred chhhheeeeeeeeeeehhhhhh
Confidence 9999999999999999999764
No 2
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.7e-37 Score=229.42 Aligned_cols=96 Identities=56% Similarity=0.960 Sum_probs=82.6
Q ss_pred CCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcHhhhhce
Q 033723 15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG 94 (112)
Q Consensus 15 ~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A~~~I~G 94 (112)
|+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.+++|++++|++||+|
T Consensus 10 p~~I~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~s~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~G 89 (217)
T d1sawa_ 10 GKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGG 89 (217)
T ss_dssp CCEEEEESCCBC-----------CCCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEE
T ss_pred CCcEEEEeccHHHHHHHHCCCCCCCCeEEecChhhccCCCCceeCCcccceeeeecceEEEeeeeeceeehhhHhhcccc
Confidence 79999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEEeecchHhHHhhh
Q 033723 95 YAVALDMTAREIQSSA 110 (112)
Q Consensus 95 yti~nD~TaRd~q~~~ 110 (112)
||++||+|+||+|...
T Consensus 90 yti~nDvt~Rd~q~~~ 105 (217)
T d1sawa_ 90 YALCLDMTARDVQDEC 105 (217)
T ss_dssp EEEEECCEEHHHHHHH
T ss_pred ceeeeeechhHHHHHH
Confidence 9999999999999654
No 3
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.9e-37 Score=226.88 Aligned_cols=100 Identities=40% Similarity=0.645 Sum_probs=87.5
Q ss_pred hhccCC-CcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChhcH
Q 033723 10 KLIQAG-TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA 88 (112)
Q Consensus 10 ~~l~~~-~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~~A 88 (112)
++++.| +||||+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|.....+|||+||++||||.+++++.++|
T Consensus 3 p~~p~p~~~I~cvg~Ny~~H~~E~~~~~p~~P~~F~Kp~ssl~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~i~~~~a 82 (216)
T d1gtta2 3 PTLPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADA 82 (216)
T ss_dssp CCCSSSCSCEEEESSCBCCC--------CCSCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTG
T ss_pred CCCCCCCCCEEEEEccHHHHHHHhCCCCCCCCEEEEEecccccCCCcccccccccceEEeeceEEEEEeccceeecHHHh
Confidence 466755 7999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hhhhceEEEEeecchHhHHhh
Q 033723 89 MDYVGGYAVALDMTAREIQSS 109 (112)
Q Consensus 89 ~~~I~Gyti~nD~TaRd~q~~ 109 (112)
++||+|||++||+|+||+|..
T Consensus 83 ~~~I~Gy~i~nD~t~rd~~~~ 103 (216)
T d1gtta2 83 MDYVAGYTVCNDYAIRDYLEN 103 (216)
T ss_dssp GGGEEEEEEEECCEEGGGCCS
T ss_pred hhheeeeeccccccchhhhhc
Confidence 999999999999999999854
No 4
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.4e-35 Score=214.20 Aligned_cols=94 Identities=30% Similarity=0.479 Sum_probs=87.5
Q ss_pred CCcEEEEccCcHHHHHHhCCC--------CCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCCCCCChh
Q 033723 15 GTKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (112)
Q Consensus 15 ~~ki~~vg~NY~~h~~e~~~~--------~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~~~v~~~ 86 (112)
.+||||+|+||++|++|++.. +|+.|++|+|+++++++++++|.+|.. ..+|||+|||+||||.+++|+++
T Consensus 2 ~gki~~vglNY~~h~~e~~~~~~~~p~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~-~~~~~E~ELavVIgk~~~~i~~~ 80 (213)
T d1gtta1 2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREE 80 (213)
T ss_dssp CSCEEEEESCBHHHHHHHTTGGGSTTTCSCCSSCEEEEECGGGEECTTCCEEECTT-CCEECCEEEEEEECSCBSSCCGG
T ss_pred CceEEEEeCChHHHHHHHhhhhhcCcccCCCCCCEEEEcchHHeeCCCCcEEEecc-ceeeeeeeEEEEeecccccchhh
Confidence 489999999999999999752 378999999999999999999999974 57999999999999999999999
Q ss_pred cHhhhhceEEEEeecchHhHHhh
Q 033723 87 TAMDYVGGYAVALDMTAREIQSS 109 (112)
Q Consensus 87 ~A~~~I~Gyti~nD~TaRd~q~~ 109 (112)
+|++||+|||++||+|+||+|..
T Consensus 81 ~A~~~I~Gyti~nD~T~rd~~~~ 103 (213)
T d1gtta1 81 DAAEYIAGYALANDVSLPEESFY 103 (213)
T ss_dssp GGGGGEEEEEEEECCBSCCCCSS
T ss_pred hhHHHHHHHHhhhccchHhhhhh
Confidence 99999999999999999998854
No 5
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.6e-34 Score=218.06 Aligned_cols=100 Identities=44% Similarity=0.721 Sum_probs=85.8
Q ss_pred hhccCCCcEEEEccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCc-------------------------EeeCCCCC
Q 033723 10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGT-------------------------IEVPHPLD 64 (112)
Q Consensus 10 ~~l~~~~ki~~vg~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~-------------------------i~~P~~~~ 64 (112)
.++.+++||+|+|+||++|++|++...|+.|++|+||+++++++++. +..|. +.
T Consensus 3 ~~~~~~rkI~cvG~NY~~Ha~E~g~~~p~~P~~F~Kp~ssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~p~-~~ 81 (257)
T d1nkqa_ 3 NYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPR-GV 81 (257)
T ss_dssp GGGGGCCCEEEECSCBCSSGGGGGC----CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECT-TC
T ss_pred cccCCCCcEEEEeccHHHHHHHHCCCCCCCCEEEEechhheecCCcccccccccccccccccccccccCCCceeCCC-cc
Confidence 35788999999999999999999999999999999999999987653 44454 45
Q ss_pred CceeceeEEEEECCCCCCCC---hhcHhhhhceEEEEeecchHhHHhhh
Q 033723 65 SLHHEVELAVVIGQKARDVP---ETTAMDYVGGYAVALDMTAREIQSSA 110 (112)
Q Consensus 65 ~ld~E~ELavVIGk~~~~v~---~~~A~~~I~Gyti~nD~TaRd~q~~~ 110 (112)
++|||+||||||||.+++++ +++|++||+|||++||+|+||+|...
T Consensus 82 ~ld~E~EL~vVIgk~~~~i~~~~~e~A~~~V~Gy~i~nD~s~Rd~q~~~ 130 (257)
T d1nkqa_ 82 KVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEA 130 (257)
T ss_dssp CEEECEEEEEEECSCBCSCCCCCGGGTGGGEEEEEEEECCEEHHHHHHH
T ss_pred cceeeEEEEEEEeeccccccchhHHHHHHHHhhhhhccccccccchhhh
Confidence 79999999999999999986 59999999999999999999999754
No 6
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.94 E-value=3.1e-28 Score=186.76 Aligned_cols=74 Identities=27% Similarity=0.345 Sum_probs=68.1
Q ss_pred CCCEEEecCCCCcccCCCcEeeCC--------------CCCCceeceeEEEEECCC---CCCCChhcHhhhhceEEEEee
Q 033723 38 KEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK---ARDVPETTAMDYVGGYAVALD 100 (112)
Q Consensus 38 ~~P~~f~K~~~a~~g~~~~i~~P~--------------~~~~ld~E~ELavVIGk~---~~~v~~~~A~~~I~Gyti~nD 100 (112)
+.|++|.|+++++++++++|.+|. .+..||||+||+|||||. ||+|++++|++||+|||++||
T Consensus 36 ~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~ND 115 (298)
T d1hyoa2 36 HLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMND 115 (298)
T ss_dssp TSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEEC
T ss_pred cCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeeceEEEEEecccccCccCCHHHHHHHHHHHhhhhh
Confidence 469999999999999999999993 367899999999999975 899999999999999999999
Q ss_pred cchHhHHhhhC
Q 033723 101 MTAREIQSSAK 111 (112)
Q Consensus 101 ~TaRd~q~~~k 111 (112)
||+||+|...+
T Consensus 116 vSaRd~Q~~~~ 126 (298)
T d1hyoa2 116 WSARDIQQWEY 126 (298)
T ss_dssp CEEHHHHHHHC
T ss_pred hhHHHHHHhhc
Confidence 99999997643
No 7
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}
Probab=97.35 E-value=0.00016 Score=51.53 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=65.8
Q ss_pred cCCCcEEEE--ccCcHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeeCCCCCCceeceeEEEEECCCC--CCCChhcH
Q 033723 13 QAGTKIVAV--GRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTA 88 (112)
Q Consensus 13 ~~~~ki~~v--g~NY~~h~~e~~~~~p~~P~~f~K~~~a~~g~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~v~~~~A 88 (112)
....++.|- |..-++--+.++. ++|++..-..+.+..++..+.++... .+..|+||+++||++. +..+.+++
T Consensus 51 ~~g~~~~G~Kig~ts~~~q~~~g~---~~p~~g~l~~~~~~~~~~~i~~~~~~-~~~iE~Eiaf~i~~~~~~~~~~~~~v 126 (261)
T d1sv6a_ 51 AQGRRVVGRKVGLTHPKVQQQLGV---DQPDFGTLFADMCYGDNEIIPFSRVL-QPRIEAEIALVLNRDLPATDITFDEL 126 (261)
T ss_dssp TTTCCEEEEEEECCSHHHHHTTTC---SSCEEEEEEGGGEEETTEEECTTSSS-SCEEEEEEEEEESSCBCCTTCCHHHH
T ss_pred hcCCccccceeeccCHHHHhhcCC---CCcccccccCceEEeecccccccccc-ccceeeEEEEEecCccccccccHHHH
Confidence 334555553 3333333344444 35766555666778888888876554 5889999999999994 57899999
Q ss_pred hhhhceEEEEeecchHhHHh
Q 033723 89 MDYVGGYAVALDMTAREIQS 108 (112)
Q Consensus 89 ~~~I~Gyti~nD~TaRd~q~ 108 (112)
.++|.++..++++..+.++.
T Consensus 127 ~~~i~~v~~~iEi~~~r~~~ 146 (261)
T d1sv6a_ 127 YNAIEWVLPALEVVGSRIRD 146 (261)
T ss_dssp HTTEEEEEEEEEEECCSBTT
T ss_pred HHHhhhcccchhcchhhhhh
Confidence 99999999999998776653
No 8
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
Probab=15.78 E-value=43 Score=19.63 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=13.6
Q ss_pred CCCEEEecCCCCcccC
Q 033723 38 KEPVLFLKPTSSYLGN 53 (112)
Q Consensus 38 ~~P~~f~K~~~a~~g~ 53 (112)
++|.+|+|.++++...
T Consensus 53 eqpyvfikrsdalstn 68 (115)
T d2gdta1 53 EQPYVFIKRSDALSTN 68 (115)
T ss_dssp CSCEEEEECCSSCCCC
T ss_pred cCceEEEEcccccccc
Confidence 6899999999988654
No 9
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=13.16 E-value=50 Score=18.89 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=21.7
Q ss_pred CCCEEEecCCCCcccCC-CcEeeCCCCCCceeceeEE
Q 033723 38 KEPVLFLKPTSSYLGNG-GTIEVPHPLDSLHHEVELA 73 (112)
Q Consensus 38 ~~P~~f~K~~~a~~g~~-~~i~~P~~~~~ld~E~ELa 73 (112)
+.-.+++.+.-+.-..+ .+..+|+.+ .|.||+||.
T Consensus 75 e~~~v~ip~~~ayG~~g~~~~~Ipp~a-~l~f~ieLl 110 (115)
T d1kt1a3 75 EQCILHLGPRYGFGEAGKPKFGIEPNA-ELIYEVTLK 110 (115)
T ss_dssp CEEEEEECGGGSSCTTCBTTTTBCTTC-CEEEEEEEE
T ss_pred ceeEEEeCHHHCcCCCCCCCCCcCcCC-eEEEEEEEE
Confidence 34456666655544334 334577765 489999995
No 10
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=11.94 E-value=22 Score=18.68 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=0.4
Q ss_pred EEEEECCCCCCCCh
Q 033723 72 LAVVIGQKARDVPE 85 (112)
Q Consensus 72 LavVIGk~~~~v~~ 85 (112)
++.|||+.|++|..
T Consensus 14 ig~vIG~GG~~Ik~ 27 (54)
T d1e3ha4 14 IGEVIGPKRQMINQ 27 (54)
T ss_dssp -------------C
T ss_pred eeEEECCccHHHHH
Confidence 57899999998743
Done!