RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 033723
(112 letters)
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 176 bits (449), Expect = 8e-58
Identities = 57/111 (51%), Positives = 76/111 (68%)
Query: 1 MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
+ AS + + + G IV VGRNYA H +E+ +AV EPVLFLKP+++Y G I +P
Sbjct: 4 IMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMP 63
Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
+LHHE+EL VV+G++ R VPE AMDYVGGYA+ LDMTAR++Q K
Sbjct: 64 AYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECK 114
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 171 bits (436), Expect = 1e-55
Identities = 41/95 (43%), Positives = 58/95 (61%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KIV VGRNYAAHAKEL N +P P+LF+KP SS + G +P S+HHE+E+A++I
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
G+ + + G + LD+T R++Q K
Sbjct: 77 GKALSRASTEQVAESIAGIGLGLDLTLRDVQDQLK 111
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 170 bits (432), Expect = 3e-55
Identities = 41/95 (43%), Positives = 57/95 (60%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
K+V VG NYA H KE+G+ EPVLF+KP ++ + +P S+HHE+ELAV+I
Sbjct: 21 KVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLI 80
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQSSAK 111
G + E + GY VALD+T RE+Q+ K
Sbjct: 81 GTPLKQASEDRVARAIAGYGVALDLTLRELQAGFK 115
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 151 bits (384), Expect = 2e-47
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 27/130 (20%)
Query: 9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDS--- 65
++A KI+ +GRNYAAH KEL N+ PK+P FLKPTSS + + V +
Sbjct: 3 YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 62
Query: 66 ---------------------LHHEVELAVVIGQKARDVPETT---AMDYVGGYAVALDM 101
+HHE+ELA+++ + +V + D + G A+ALD+
Sbjct: 63 FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDL 122
Query: 102 TAREIQSSAK 111
TAR +Q AK
Sbjct: 123 TARNVQDEAK 132
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 146 bits (371), Expect = 1e-45
Identities = 42/92 (45%), Positives = 58/92 (63%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
KI+ V NYA HA+ELG + P+EP LF KP +S L + G + P +H+EVELAVV
Sbjct: 44 GKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVV 103
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
+G+ + V A+DYV GY +A D+ AR+
Sbjct: 104 VGRPMKRVRAKDALDYVLGYTIANDLVARDYV 135
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 146 bits (370), Expect = 3e-45
Identities = 42/94 (44%), Positives = 64/94 (68%)
Query: 14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
+K+VA+G+NYAAHA E+G P+ PV+F+KP +S +G G I++P +HHE ELA
Sbjct: 63 LASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELA 122
Query: 74 VVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
+VIG+ +DVP A + + GY + D++AR+ Q
Sbjct: 123 IVIGRPCKDVPAARAAENILGYTIGNDVSARDHQ 156
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 146 bits (370), Expect = 8e-44
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
+ A+G NYA HA EL P+EP++FLK ++ G+ T P+ ++ +H+E EL VVI
Sbjct: 224 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 283
Query: 77 GQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
G++AR+V E AMDYV GY V D R+
Sbjct: 284 GKQARNVSEADAMDYVAGYTVCNDYAIRDYL 314
Score = 132 bits (334), Expect = 2e-38
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 16 TKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
I AV N+ + A PK V F+KP ++ +G G I P + +
Sbjct: 3 GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFP-QGEKVL 61
Query: 68 HEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
+A+++G+ A V E A +Y+ GYA+A D++ E
Sbjct: 62 SGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES 101
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 133 bits (337), Expect = 2e-40
Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 13/105 (12%)
Query: 16 TKIVAVGRNYAAHAKELGN----AVPKEPVLFLKPTSSYLGNGGTI-------EVPHPLD 64
TKIV VGRNY H +E+G+ +PKEP LFLK ++ G VP+P
Sbjct: 48 TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 65 S--LHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
+ LH+E ELAVV+G + R VP A+D+V GY VA+D+TAR++Q
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQ 152
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 121 bits (306), Expect = 4e-35
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 17 KIVAVGRNYAAHAK-ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+++A+G NY H+ + +PV+F+K +S G + P +L +E+E+AVV
Sbjct: 105 QVIALGFNYPTHSDTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVV 164
Query: 76 IGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
IG+ + + A+ +V GY +A D+TAR++
Sbjct: 165 IGKPGYRIERSQAIKHVAGYMLANDITARDVA 196
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 93.2 bits (232), Expect = 2e-24
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 26/107 (24%)
Query: 17 KIVAVGRNYAAHAKELGN---------------AVPKEPVLFLKPT-SSYLGNGGTIEVP 60
++ G +Y + P +F K T + +G+G I V
Sbjct: 75 EVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVR 134
Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQ 107
+ E ELAVV+ + + GY + D++AR+++
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSARDLE 171
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 89.2 bits (221), Expect = 1e-22
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 17 KIVAVGRNYAAHAK--------ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
A G Y H + E+ + +P+++ + S+LG I + +
Sbjct: 100 FQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDM 159
Query: 69 EVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQS 108
E E AV++ A + + D++ R +
Sbjct: 160 EGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLIP 199
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 54.0 bits (129), Expect = 6e-10
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 21 VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
VG + L PV + SS + +G I P L
Sbjct: 139 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 198
Query: 67 HHEVELAVVIGQK---ARDVPETTAMDYVGGYAVALDMTAREIQ 107
E+E+A +G +P + A +++ G + D +AR+IQ
Sbjct: 199 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 242
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 31.0 bits (71), Expect = 0.046
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
+ ++ + G ++V A GR A EL +L SY NGG I
Sbjct: 30 TLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFIL------SY--NGGEI 76
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTIE 58
AVQ G K+V GR + + + + ++ NG +
Sbjct: 30 AVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAI------TF--NGSVAQ 77
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 29.8 bits (68), Expect = 0.14
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+ G +V GR YA + KEL P + + +Y NG +
Sbjct: 30 AIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI------TY--NGALV 76
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
1.55A {Arthrobacter globiformis} SCOP: b.30.2.1
d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A*
2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A*
1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A*
1av4_A* 1iqx_A* ...
Length = 646
Score = 28.7 bits (63), Expect = 0.39
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 56 TIEVPHPLDSL-HHEVELAVVIGQKARDVPETTAMDYVG 93
TI+ P E+ I + A + + Y+G
Sbjct: 3 TIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIAYLG 41
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 27.5 bits (62), Expect = 0.88
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
++ L G V A GR+Y LG + ++ + NG +
Sbjct: 46 TLKLLTARGINFVFATGRHYIDVGQIRDNLGI---RSYMI------TS--NGARV 89
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG;
2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1
PDB: 1w2z_A*
Length = 642
Score = 27.6 bits (60), Expect = 1.1
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 59 VPHPLDSL-HHEVELAVVIGQKARDVPETT 87
V HPLD L E I Q +
Sbjct: 1 VQHPLDPLTKEEFLAVQTIVQNKYPISNNR 30
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 26.8 bits (60), Expect = 1.6
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELG 33
A++ + + G + R++ + AK L
Sbjct: 31 AIEYVKKKGIYVTLVTNRHFRSAQKIAKSLK 61
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 26.4 bits (59), Expect = 1.8
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+++ I+ G + GR+ E K+ + P NG +
Sbjct: 53 AIKEAIEKGYMVSICTGRSKVGILSAFGEENL---KKMNFYGMPGVYI--NGTIV 102
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 26.0 bits (58), Expect = 3.4
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 39 EPVLFLKPTSSYLGNGGTIEV-PHPL------DSLHHEVELAVVIGQKARDVPET--TAM 89
PVLF + + +E+ PH L L + ++ + RD E +
Sbjct: 743 SPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEFFLAGI 802
Query: 90 D--YVGGYAV 97
++ G
Sbjct: 803 GRLHLSGIDA 812
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 25.7 bits (57), Expect = 3.9
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+++ + G ++V + GR + + LG K V+ S NG I
Sbjct: 29 ALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI---KTWVI------SA--NGAVI 72
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 25.4 bits (55), Expect = 4.7
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
++ EL A+ + LK L + PL +L + +
Sbjct: 33 CASLDVRTTKELLELVEAL-GPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
Query: 78 QKARDVPETTAMDYVGGYA 96
++ D+ T + Y G
Sbjct: 92 RRFADIGNTVKLQYSAGVY 110
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 25.2 bits (56), Expect = 6.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
L + G K++AV
Sbjct: 222 GRWTAYWLEKMGAKVIAV 239
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 24.8 bits (55), Expect = 7.0
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
++ + G ++VAV
Sbjct: 230 GAAVALHAERLGMRVVAV 247
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 24.9 bits (55), Expect = 8.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
A A +KL + G K V +
Sbjct: 242 AWGAAKKLAELGAKAVTL 259
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 24.8 bits (54), Expect = 8.9
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 13 QAGTKIVAVGRNYAAHAKEL-----------GNAVPKEPVLFLKPTSSYLGNGGTIEVPH 61
Q+GT V+ NY A K+ N K+P+ G +
Sbjct: 453 QSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQ 512
Query: 62 PLDSLHHEVELAVVIGQKARDVP 84
L E + V + +P
Sbjct: 513 TTLELTKESDTFVFNNIAVKPIP 535
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 24.4 bits (54), Expect = 9.2
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
S + + AG K++ +
Sbjct: 233 GSFLAKFMHDAGAKVIGI 250
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 24.5 bits (54), Expect = 9.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
A V+KLI+ G ++ +
Sbjct: 251 AQYLVEKLIEKGAIVLTM 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.353
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,663,893
Number of extensions: 95321
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 44
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)