Query 033724
Match_columns 112
No_of_seqs 103 out of 224
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_j 60S ribosomal protein L 100.0 3.5E-66 1.2E-70 371.5 6.9 111 2-112 1-111 (111)
2 3izc_j 60S ribosomal protein R 100.0 1.2E-65 4E-70 366.9 3.3 107 6-112 1-107 (107)
3 4a18_H RPL35A; ribosome, eukar 100.0 1.1E-63 3.7E-68 359.5 9.6 104 8-112 10-113 (113)
4 1sqr_A 50S ribosomal protein L 100.0 5.4E-54 1.9E-58 301.3 7.5 88 13-108 2-89 (95)
5 3j21_c 50S ribosomal protein L 100.0 9.4E-51 3.2E-55 281.1 8.7 84 14-105 3-86 (87)
6 1wb1_A Translation elongation 90.7 0.039 1.3E-06 45.6 -0.5 67 28-109 413-479 (482)
7 3h9n_A Ribosome maturation fac 86.6 0.35 1.2E-05 35.5 2.3 68 17-90 48-132 (177)
8 2f1l_A 16S rRNA processing pro 86.6 0.86 2.9E-05 33.9 4.5 38 17-60 66-103 (187)
9 2dyi_A Probable 16S rRNA-proce 86.5 0.26 9E-06 35.7 1.6 38 17-60 42-79 (162)
10 2qgg_A 16S rRNA-processing pro 85.8 0.3 1E-05 36.0 1.6 38 17-60 57-94 (182)
11 3h9n_A Ribosome maturation fac 77.0 2.7 9.2E-05 30.7 4.0 28 70-97 2-29 (177)
12 2qgg_A 16S rRNA-processing pro 75.0 3.3 0.00011 30.3 4.0 27 70-96 11-37 (182)
13 2dyi_A Probable 16S rRNA-proce 74.7 2.2 7.6E-05 30.7 3.0 21 71-92 4-24 (162)
14 2f1l_A 16S rRNA processing pro 71.7 4.4 0.00015 30.0 4.0 27 70-96 20-46 (187)
15 2bjq_A MFP2A; motility, nemato 61.7 17 0.00058 30.1 6.0 49 51-110 31-83 (345)
16 1xk5_A Snurportin-1; protein-R 59.9 9.3 0.00032 29.1 3.9 35 50-98 30-64 (204)
17 3kdf_A Replication protein A 1 53.8 51 0.0018 22.7 6.8 33 72-105 27-69 (121)
18 4gop_A Putative uncharacterize 51.5 43 0.0015 22.7 5.9 34 72-106 23-64 (114)
19 3kxt_A Chromatin protein CREN7 45.0 12 0.00042 23.5 2.0 19 75-93 22-40 (56)
20 3gjx_B Snurportin-1; transport 32.2 43 0.0015 27.8 3.9 62 24-99 98-166 (365)
21 2zkq_q 40S ribosomal protein S 29.2 94 0.0032 22.9 5.0 63 39-106 43-129 (158)
22 2bjr_A MFP2B; motility, nemato 25.7 66 0.0023 26.8 3.9 46 54-110 35-84 (368)
23 2lfe_A E3 ubiquitin-protein li 25.6 28 0.00094 25.4 1.5 11 79-89 119-129 (138)
No 1
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=100.00 E-value=3.5e-66 Score=371.51 Aligned_cols=111 Identities=82% Similarity=1.358 Sum_probs=102.4
Q ss_pred cCCCCCceeeeEEEEEEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEecccccCCceeEEEEEEEEceeC
Q 033724 2 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHG 81 (112)
Q Consensus 2 ~~~~~~~~~RLy~kgv~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HG 81 (112)
++++.+++.|||+||+|+|||||++||+|||||||||||+++|||+||||||||||||++++++|+++|+|||||+|+||
T Consensus 1 ~~~~~~~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HG 80 (111)
T 3iz5_j 1 MKGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHG 80 (111)
T ss_dssp CCCSCCCCCCCCCCEEEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESS
T ss_pred CCcccCCCceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeC
Confidence 57899999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCceEEEEecCCCCccCCCCeEEEEEeecCC
Q 033724 82 NSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112 (112)
Q Consensus 82 nsGvVrAkF~~nLPp~aiG~~vrVmLyps~i 112 (112)
|||+|||+|++||||||||++||||||||+|
T Consensus 81 nsGvVrAkF~~nLP~kA~G~~VrVmLyps~i 111 (111)
T 3iz5_j 81 NSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111 (111)
T ss_dssp SSSCEEEECSSCCSTTCCSSCBCC-------
T ss_pred CCCEEEEEeCCCCChHHcCCEEEEEEecCCC
Confidence 9999999999999999999999999999997
No 2
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=100.00 E-value=1.2e-65 Score=366.86 Aligned_cols=107 Identities=57% Similarity=1.002 Sum_probs=98.2
Q ss_pred CCceeeeEEEEEEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEecccccCCceeEEEEEEEEceeCCCce
Q 033724 6 QGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGV 85 (112)
Q Consensus 6 ~~~~~RLy~kgv~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGv 85 (112)
|.+++|||+||+|+|||||++||+|||||||||||+++|||+||||||||||||++++++|+|+|+|||||+|+|||||+
T Consensus 1 ~~~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGnsGv 80 (107)
T 3izc_j 1 MAESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGV 80 (107)
T ss_dssp CCSSCCCCCCEEEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSSSSC
T ss_pred CCCCceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCCCCe
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccCCCCeEEEEEeecCC
Q 033724 86 VRAKFKSNLPPKSMGDRVRVFMYPSNI 112 (112)
Q Consensus 86 VrAkF~~nLPp~aiG~~vrVmLyps~i 112 (112)
|||+|++||||||||++||||||||+|
T Consensus 81 VrAkF~~nLP~kA~G~~VrVmLyps~i 107 (107)
T 3izc_j 81 VRATFRNNLPAKTFGASVRIFLYPSNI 107 (107)
T ss_dssp EEECCCSCCSTTCCSSCBCC-------
T ss_pred EEEEeCCCCChHHcCCeEEEEEecCCC
Confidence 999999999999999999999999997
No 3
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=100.00 E-value=1.1e-63 Score=359.49 Aligned_cols=104 Identities=48% Similarity=0.963 Sum_probs=101.6
Q ss_pred ceeeeEEEEEEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEecccccCCceeEEEEEEEEceeCCCceEE
Q 033724 8 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVR 87 (112)
Q Consensus 8 ~~~RLy~kgv~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVr 87 (112)
+++|||+||+|+|||||++||+|||||||||||+++|||+||||||||||||++++ .|+|+|+|||||+|+|||||+||
T Consensus 10 ~~~rly~Kgv~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~-~g~k~RviwGKVtR~HGnsGvVr 88 (113)
T 4a18_H 10 APTRLWVKAAFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKK-NGSNYRTIWGRIGKAHGNNGVAV 88 (113)
T ss_dssp CSCCCCEEEEEEEEEEETTEEEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEE-TTEEEEEEEEEEEEEETTTTEEE
T ss_pred ccceeEEEEEEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCC-CCCeEEEEEEEEEeeeCCCCeEE
Confidence 67899999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEecCCCCccCCCCeEEEEEeecCC
Q 033724 88 AKFKSNLPPKSMGDRVRVFMYPSNI 112 (112)
Q Consensus 88 AkF~~nLPp~aiG~~vrVmLyps~i 112 (112)
|+|++||||||||++||||||||+.
T Consensus 89 AkF~~nLP~kA~G~~VrVmLyPs~~ 113 (113)
T 4a18_H 89 ARFAHNLPPQAIGSVLRVMLYPNRA 113 (113)
T ss_dssp EEESSCCCGGGGGSEEEEECCCCCC
T ss_pred EEeCCCCChHHcCCeEEEEEecCCC
Confidence 9999999999999999999999973
No 4
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=100.00 E-value=5.4e-54 Score=301.30 Aligned_cols=88 Identities=34% Similarity=0.609 Sum_probs=84.6
Q ss_pred EEEEEEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEecccccCCceeEEEEEEEEceeCCCceEEEEecC
Q 033724 13 YVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFKS 92 (112)
Q Consensus 13 y~kgv~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~~ 92 (112)
|+||+|+|||||++||+|||||||||||+++|||+|||||||||||+++ |+|||||+|||||||+|||+|++
T Consensus 2 ~~Kgv~lgYkRg~~nQ~~~~aLlkIegV~~k~~a~fYlGKrvayvyka~--------rviwGKVtR~HGnsGvVrAkF~~ 73 (95)
T 1sqr_A 2 RIKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSG--------KILKGKIVRVHGTKGAVRARFEK 73 (95)
T ss_dssp CCEEEEEEEECCSSSSSCCEEEEEESCCCCHHHHHHHTTCEEEECCSTT--------CCEEEEEEEESSSSSCEEEECSS
T ss_pred eeeEEEEeeccccCcCCCceEEEEEcCCCCHHHHHhhcCCeEEEEECCC--------CEEEEEEEeeeCCCCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999999885 89999999999999999999999
Q ss_pred CCCccCCCCeEEEEEe
Q 033724 93 NLPPKSMGDRVRVFMY 108 (112)
Q Consensus 93 nLPp~aiG~~vrVmLy 108 (112)
||||||||++|||||-
T Consensus 74 nLP~kA~G~~VrVml~ 89 (95)
T 1sqr_A 74 GLPGQALGDYVEIVLE 89 (95)
T ss_dssp CCSSSCTTCEEECC--
T ss_pred CCChHHcCCEEEEEEe
Confidence 9999999999999984
No 5
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=100.00 E-value=9.4e-51 Score=281.09 Aligned_cols=84 Identities=37% Similarity=0.675 Sum_probs=81.0
Q ss_pred EEEEEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEecccccCCceeEEEEEEEEceeCCCceEEEEecCC
Q 033724 14 VRGTILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFKSN 93 (112)
Q Consensus 14 ~kgv~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~~n 93 (112)
+||+|+|||||++||+|||||||||||+++|||+|||||||||||++ | ++|||||+|+|||||+|||+|++|
T Consensus 3 ~Kg~~~gykRg~~nQ~~~taLlkieGV~~~~~a~fylGKrvayv~~~-----g---~~iwGKVtr~HGnsGvVrAkF~~n 74 (87)
T 3j21_c 3 IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPS-----G---KILKGKIVRVHGTKGAVRARFEKG 74 (87)
T ss_dssp EEEEEEEESCCSSCCCTTCEEEEESSCCSHHHHGGGTTCEEEECCSS-----S---CCEEEEEEEECCSSSCEEEEESSC
T ss_pred eeEEEEecccccCcCCCCeEEEEEcCcCCHHHHHhhcCceEEEEeCC-----C---CEEEEEEEeeeCCCCeEEEEeCCC
Confidence 79999999999999999999999999999999999999999999974 3 489999999999999999999999
Q ss_pred CCccCCCCeEEE
Q 033724 94 LPPKSMGDRVRV 105 (112)
Q Consensus 94 LPp~aiG~~vrV 105 (112)
|||||||++|||
T Consensus 75 LP~~a~G~~Vri 86 (87)
T 3j21_c 75 LPGQALGDYVEI 86 (87)
T ss_dssp CCSSCSCCEECC
T ss_pred CChHHcCCeEEe
Confidence 999999999997
No 6
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=90.69 E-value=0.039 Score=45.58 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=50.9
Q ss_pred CCCCeeEEEecCcCCcchhceeecceEEEEEecccccCCceeEEEEEEEEceeCCCceEEEEecCCCCccCCCCeEEEEE
Q 033724 28 QYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFM 107 (112)
Q Consensus 28 Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~~nLPp~aiG~~vrVmL 107 (112)
++.++++++=- ..+..|.++|+|.+|.-. .| -|+|.|-.+.|.||.++|.|.-.|.++ +.|.+-|
T Consensus 413 ~~~~~~i~~~l-f~~~~~~~~f~g~~v~~~-------~g----~~~G~I~~~fg~~G~~~~~f~~~~~~~---d~v~~~~ 477 (482)
T 1wb1_A 413 IDKGRTVIDGL-AQSKVAAEKLIGEEISIE-------GK----DIVGKIKGTFGTKGLLTAEFSGNVENR---DKVILNR 477 (482)
T ss_dssp CCSSCCEETTS-CSSHHHHHHSCSCCCEET-------TT----CCCBCCCCCBTTTTBBCCCBSSCCCSS---CEEEEEC
T ss_pred EcCCEEEEEcC-ccchhhhHHhcCcEEEEc-------CC----ceEEEEeccCCCCceEEEEecCCCCCC---Ceeeeeh
Confidence 46777777622 455668999999998762 23 256999999999999999999998875 5666666
Q ss_pred ee
Q 033724 108 YP 109 (112)
Q Consensus 108 yp 109 (112)
|.
T Consensus 478 ~~ 479 (482)
T 1wb1_A 478 LR 479 (482)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 7
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=86.57 E-value=0.35 Score=35.45 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=43.5
Q ss_pred EEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEecccc-----------cCCceeE----EEEEEEEcee-
Q 033724 17 TILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKAKVK-----------KNGSHYR----CIWGKVARPH- 80 (112)
Q Consensus 17 v~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~k~~-----------~~g~k~r----viwGKV~r~H- 80 (112)
.+.++|. +.+..|+|++||+|+++|+.+.|..+ ||-++.-- .-|-.+. ...|+|+...
T Consensus 48 ~v~~~r~-----~~~~~lvkf~gi~dr~~Ae~L~G~~l-~v~~~~lp~l~edE~Y~~dLiGl~V~~~~g~~lG~V~~v~~ 121 (177)
T 3h9n_A 48 ELENWRY-----HNHEIIVKLKGVDDREAAQILANVEI-GVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 121 (177)
T ss_dssp CEEEEEE-----SSSCEEEEESSCCSHHHHHTTTTCEE-EEECCCCCCCSSSCGGGGGTTTCEEEETTCCEEEEEEEEEE
T ss_pred EEEEEEE-----eCCEEEEEEcCCCCHHHHHHhcCCEE-EEEHHHCCCCCCCCCCHHHhcCCEEEeCCCCEEEEEEEEee
Confidence 3455554 34668999999999999999999988 45654311 0121111 2468888764
Q ss_pred -CCCceEEEEe
Q 033724 81 -GNSGVVRAKF 90 (112)
Q Consensus 81 -GnsGvVrAkF 90 (112)
|.+-+...+-
T Consensus 122 ~gandvl~V~~ 132 (177)
T 3h9n_A 122 TGSNDVLVVKA 132 (177)
T ss_dssp SSSCEEEEEEC
T ss_pred CCCcEEEEEEe
Confidence 5555556653
No 8
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=86.57 E-value=0.86 Score=33.86 Aligned_cols=38 Identities=11% Similarity=0.279 Sum_probs=29.7
Q ss_pred EEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEec
Q 033724 17 TILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKA 60 (112)
Q Consensus 17 v~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~ 60 (112)
.+.++|. +.+..|+|++||+|+++|+.+.|..+. |-++
T Consensus 66 ~v~~~r~-----~~~~~ivkf~gi~dr~~Ae~L~G~~l~-v~r~ 103 (187)
T 2f1l_A 66 ELVRGRL-----HGKVLAAKLKGLDDREEARTFTGYEIC-IPRS 103 (187)
T ss_dssp EEEEEEE-----ETTEEEEEETTCCSHHHHHTTTTCEEE-EEGG
T ss_pred EEEEEEE-----ECCEEEEEEeCCCCHHHHHHhCCCEEE-EEHH
Confidence 4556653 346799999999999999999999775 4554
No 9
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=86.48 E-value=0.26 Score=35.71 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=30.2
Q ss_pred EEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEec
Q 033724 17 TILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKA 60 (112)
Q Consensus 17 v~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~ 60 (112)
.+.++|. +.+..|+|++||+|+++|+.+.|..+. |-++
T Consensus 42 ~v~~~r~-----~~~~~ivkf~gi~~r~~Ae~L~G~~l~-v~~~ 79 (162)
T 2dyi_A 42 AIEDLYR-----VGEELVVHLAGVTDRTLAEALVGLRVY-AEVA 79 (162)
T ss_dssp EEEEEEE-----ETTEEEEEETTCCSHHHHHTTTTCEEE-EEGG
T ss_pred EEEEEEE-----ECCEEEEEEcCCCCHHHHHHhCCCEEE-EEHH
Confidence 5667764 256799999999999999999999774 4554
No 10
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=85.81 E-value=0.3 Score=36.00 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=29.3
Q ss_pred EEEeeecccCCCCCCeeEEEecCcCCcchhceeecceEEEEEec
Q 033724 17 TILGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYCGKRMAYIYKA 60 (112)
Q Consensus 17 v~~gykRg~~~Q~~~~aLlKIegV~~~~~a~fylGKrvayvyk~ 60 (112)
.+.++|. +.+..|+|++||+|+++|+.+.|..+. |-++
T Consensus 57 ~v~~~r~-----~~~~~ivkf~gi~dr~~Ae~L~G~~l~-v~~~ 94 (182)
T 2qgg_A 57 DVKRWKP-----HGKGLVVSLKGVSDRTGAESLVASNIW-IAKS 94 (182)
T ss_dssp CEEEEEE-----ETTEEEEEETTCCSHHHHHTTTTCEEE-EETT
T ss_pred EEEEEEE-----cCCEEEEEECCCCCHHHHHHhCCCEEE-EEHH
Confidence 3555553 356799999999999999999999764 4554
No 11
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=77.02 E-value=2.7 Score=30.65 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.9
Q ss_pred EEEEEEEEceeCCCceEEEEecCCCCcc
Q 033724 70 RCIWGKVARPHGNSGVVRAKFKSNLPPK 97 (112)
Q Consensus 70 rviwGKV~r~HGnsGvVrAkF~~nLPp~ 97 (112)
++..|+|.++||-.|-|+..-.+.-|-.
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe~ 29 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAES 29 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGG
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHHH
Confidence 4678999999999999999877777654
No 12
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=74.96 E-value=3.3 Score=30.29 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.6
Q ss_pred EEEEEEEEceeCCCceEEEEecCCCCc
Q 033724 70 RCIWGKVARPHGNSGVVRAKFKSNLPP 96 (112)
Q Consensus 70 rviwGKV~r~HGnsGvVrAkF~~nLPp 96 (112)
.+..|+|.++||-.|-|++.-.+.-|.
T Consensus 11 ~v~vG~I~~~hGikGevkv~~~td~pe 37 (182)
T 2qgg_A 11 RIQIGQLRSAYGLNGWLWVYSNTEPMS 37 (182)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCcccCEEEEEEECCCCHH
Confidence 478899999999999999988777664
No 13
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=74.69 E-value=2.2 Score=30.72 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.6
Q ss_pred EEEEEEEceeCCCceEEEEecC
Q 033724 71 CIWGKVARPHGNSGVVRAKFKS 92 (112)
Q Consensus 71 viwGKV~r~HGnsGvVrAkF~~ 92 (112)
+..|+|.++||-.|-|+. |.-
T Consensus 4 v~vG~I~~~hGikGevkv-~td 24 (162)
T 2dyi_A 4 VEIGRFGAPYALKGGLRF-RGE 24 (162)
T ss_dssp EEEEEEEEECSSSSCEEE-EEC
T ss_pred EEEEEEeCCCccCeEEEE-EEc
Confidence 567999999999999999 655
No 14
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=71.69 E-value=4.4 Score=29.98 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.8
Q ss_pred EEEEEEEEceeCCCceEEEEecCCCCc
Q 033724 70 RCIWGKVARPHGNSGVVRAKFKSNLPP 96 (112)
Q Consensus 70 rviwGKV~r~HGnsGvVrAkF~~nLPp 96 (112)
.+..|+|.++||-.|-|++.-.+.-|.
T Consensus 20 ~v~VG~I~~~hGikGeVkV~~~Td~pe 46 (187)
T 2f1l_A 20 LVVIGKIVSVYGIRGEVKVYSFTDPLD 46 (187)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCEeeCEEEEEEECCCCHH
Confidence 478899999999999999988887664
No 15
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=61.73 E-value=17 Score=30.08 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=38.5
Q ss_pred cceEEEEEecccccCCceeEEEEEEEEceeCCCceEEEEec----CCCCccCCCCeEEEEEeec
Q 033724 51 GKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFK----SNLPPKSMGDRVRVFMYPS 110 (112)
Q Consensus 51 GKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~----~nLPp~aiG~~vrVmLyps 110 (112)
-.+||-+||. | +.+.|+.. .|+|+|-|-|- .+--++..|.++.|..|+-
T Consensus 31 N~yvALwyKs-----G---k~vlGRaW---n~~G~V~csF~~~~~E~~g~~~~~GsiQiL~~~~ 83 (345)
T 2bjq_A 31 NMYVALWYKF-----G---KPIHGRAW---NDNGNVECSFPYNKVELTGARDLGGQIQILTATE 83 (345)
T ss_dssp SCEEEEEEET-----T---EEEEEEEE---EETTEEEEEEEETTEEECCTTTTTSEEEEEECSC
T ss_pred ceEEEEEEEc-----C---cEEEeeee---cCCCcEEEEeecCCcccccccccCCeEEEEEeCC
Confidence 5789999976 4 57888765 89999999994 3345668999999988763
No 16
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=59.88 E-value=9.3 Score=29.14 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=26.9
Q ss_pred ecceEEEEEecccccCCceeEEEEEEEEceeCCCceEEEEecCCCCccC
Q 033724 50 CGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKS 98 (112)
Q Consensus 50 lGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~~nLPp~a 98 (112)
+||||.-|.. +| .|.++-.+|....+|.++||+-.
T Consensus 30 ~GkRcLvva~-----~G---------~T~~~~k~G~~~~~F~S~LPgG~ 64 (204)
T 1xk5_A 30 VGKRALIVAS-----RG---------STSAYTKSGYCVNRFSSLLPGGN 64 (204)
T ss_dssp SSEEEEEEEE-----TT---------EEEEECTTSCEEEEECCSSSSSC
T ss_pred CCcEEEEEec-----CC---------eEEEECCCCcEEEEEcccCCCCC
Confidence 5999997653 23 24467789999999999999854
No 17
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=53.78 E-value=51 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=22.4
Q ss_pred EEEEEEceeCCC----------ceEEEEecCCCCccCCCCeEEE
Q 033724 72 IWGKVARPHGNS----------GVVRAKFKSNLPPKSMGDRVRV 105 (112)
Q Consensus 72 iwGKV~r~HGns----------GvVrAkF~~nLPp~aiG~~vrV 105 (112)
++|||.+.|.+. |.|.+++...|+... +.-|.|
T Consensus 27 ivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~~l-~~~vEV 69 (121)
T 3kdf_A 27 FVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEI-SGIVEV 69 (121)
T ss_dssp EEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCC-CSEEEE
T ss_pred EEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCccc-CcEEEE
Confidence 468999888433 788999988665433 555554
No 18
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=51.50 E-value=43 Score=22.72 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=24.2
Q ss_pred EEEEEEceeCCC--------ceEEEEecCCCCccCCCCeEEEE
Q 033724 72 IWGKVARPHGNS--------GVVRAKFKSNLPPKSMGDRVRVF 106 (112)
Q Consensus 72 iwGKV~r~HGns--------GvVrAkF~~nLPp~aiG~~vrVm 106 (112)
|.|||...||+. |.|.+++..+++.+ ++.-|.|.
T Consensus 23 ivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~~~~~-~~~~vEVi 64 (114)
T 4gop_A 23 IVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVS-SSTFVEVT 64 (114)
T ss_dssp EEEEEEEEETTEEEEECTTSCEEEEECCSSCCGG-GCSEEEEE
T ss_pred EEEEEeeeCCCEEEEEeCCCCEEEEEeCCCCCcc-cCcEEEEE
Confidence 458888888754 77888888877764 56666653
No 19
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=45.01 E-value=12 Score=23.52 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.8
Q ss_pred EEEceeCCCceEEEEecCC
Q 033724 75 KVARPHGNSGVVRAKFKSN 93 (112)
Q Consensus 75 KV~r~HGnsGvVrAkF~~n 93 (112)
-+..|||..|++.+-|+..
T Consensus 22 WvL~P~GrkGVkIgLFk~P 40 (56)
T 3kxt_A 22 WALAPKGRKGVKIGLFKDP 40 (56)
T ss_dssp EEECCTTSCCEEEEEEECT
T ss_pred EEEcCCCCCceEEEEEECC
Confidence 3788999999999999965
No 20
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=32.17 E-value=43 Score=27.78 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=38.3
Q ss_pred ccCCCCCCeeEEE--ecCcCCcchhcee-----ecceEEEEEecccccCCceeEEEEEEEEceeCCCceEEEEecCCCCc
Q 033724 24 SKSNQYPNTSLIQ--IEGVNTKEDVSWY-----CGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFKSNLPP 96 (112)
Q Consensus 24 g~~~Q~~~~aLlK--IegV~~~~~a~fy-----lGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~~nLPp 96 (112)
.+...+-|+..|- +..+.+-=+.+|+ +||||.-|... |+ |.+.-.+|-...+|.++||+
T Consensus 98 k~~k~yanqlMlsEWl~dvP~dL~~~W~~vpcPvGkRcLVVas~-----G~---------T~aysk~G~~l~~F~S~LPG 163 (365)
T 3gjx_B 98 KLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASR-----GS---------TSAYTKSGYCVNRFSSLLPG 163 (365)
T ss_dssp CCCCSSSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEET-----TE---------EEEECTTCCEEEEECCSSTT
T ss_pred cccHHHHhhHHHHHhcccCCcccccCeeEEeccCCcEEEEEecC-----ce---------EEEECCCCCEEeeeCCCCCC
Confidence 3455677776552 2223221123555 59999986532 31 33456789999999999999
Q ss_pred cCC
Q 033724 97 KSM 99 (112)
Q Consensus 97 ~ai 99 (112)
-.-
T Consensus 164 G~~ 166 (365)
T 3gjx_B 164 GNR 166 (365)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 21
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=29.22 E-value=94 Score=22.88 Aligned_cols=63 Identities=27% Similarity=0.432 Sum_probs=24.1
Q ss_pred CcCCcchhc--eeecceEEEEEecccccCCceeEEEEEEEEceeCCCceE-EEEec-----------------CCCCc--
Q 033724 39 GVNTKEDVS--WYCGKRMAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVV-RAKFK-----------------SNLPP-- 96 (112)
Q Consensus 39 gV~~~~~a~--fylGKrvayvyk~k~~~~g~k~rviwGKV~r~HGnsGvV-rAkF~-----------------~nLPp-- 96 (112)
|+.++++|- .|+-++|-| -..-...| |++-|.|+..-...=+| +..+. -+.|+
T Consensus 43 ~~k~P~~~~~~~~~D~kCPf--~G~lsvRG---r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n 117 (158)
T 2zkq_q 43 GFKTPKEAIEGTYIDKKCPF--TGNVSIRG---RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCF 117 (158)
T ss_dssp ---------------------------------CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSC
T ss_pred CccCChHHhcccccCCCCCC--ccccceee---EEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCccc
Confidence 788887665 499999998 33333456 78899999876655433 43333 35554
Q ss_pred --cCCCCeEEEE
Q 033724 97 --KSMGDRVRVF 106 (112)
Q Consensus 97 --~aiG~~vrVm 106 (112)
--+|+.|+|+
T Consensus 118 ~~~kvGD~V~I~ 129 (158)
T 2zkq_q 118 RDVQIGDIVTVG 129 (158)
T ss_dssp CCC-CCCEEEEE
T ss_pred CcCCCCCEEEEE
Confidence 5689999887
No 22
>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=25.72 E-value=66 Score=26.78 Aligned_cols=46 Identities=30% Similarity=0.547 Sum_probs=34.2
Q ss_pred EEEEEecccccCCceeEEEEEEEEceeCCCceEEEEecC----CCCccCCCCeEEEEEeec
Q 033724 54 MAYIYKAKVKKNGSHYRCIWGKVARPHGNSGVVRAKFKS----NLPPKSMGDRVRVFMYPS 110 (112)
Q Consensus 54 vayvyk~k~~~~g~k~rviwGKV~r~HGnsGvVrAkF~~----nLPp~aiG~~vrVmLyps 110 (112)
||-=|+. | ..|+|+.. -|+|+|-|-|-- +--++..|.++.|..|+.
T Consensus 35 VALWYkh-----G---~PI~GRAW---n~~G~V~asF~~~~~E~tg~~d~~GsIQlL~~~g 84 (368)
T 2bjr_A 35 VALWYKN-----G---RPMHGRAW---NNGGVIECSFPYNKSELTGVKDLGGQIQVLQYKG 84 (368)
T ss_dssp EEEEEET-----T---EEEEEEEE---EETTEEEEEEEETTEEECSHHHHCSEEEEEECCS
T ss_pred EEEEecC-----C---ccceeeee---cCCCcEEEEEecCCceeccccccCCeEEEEEeCC
Confidence 5555765 5 59999877 689999999952 234557899999988853
No 23
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=25.61 E-value=28 Score=25.39 Aligned_cols=11 Identities=55% Similarity=0.745 Sum_probs=9.9
Q ss_pred eeCCCceEEEE
Q 033724 79 PHGNSGVVRAK 89 (112)
Q Consensus 79 ~HGnsGvVrAk 89 (112)
-||+||.+||-
T Consensus 119 Yhg~SgaLRAt 129 (138)
T 2lfe_A 119 YHGISGALRAT 129 (138)
T ss_dssp EETTTTEEEEE
T ss_pred ecCcccceeec
Confidence 69999999994
Done!