BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033727
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 6 LQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNIEQT 64
L+ Q+ + S+F QG +D EQ QL+ LQD+ P FV EVV+LF D+ R+I I
Sbjct: 6 LRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 65 LSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
L V+F ++D +HQ KGS +S+GA+KVK C QFR++C + +G
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 15 RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSR 74
+SLF +G LDS+ L + QD++NP+FV +VV+LF+ DS R++ ++ +L + VDF +
Sbjct: 20 KSLFLEGILDSQFLQLQQL-QDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKK 78
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+D +HQ KGS SSIGA++VK+AC FR +C N E
Sbjct: 79 VDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQ 59
M + L+ Q+ + S+F G +D EQ QL+ LQ+D P FV EVV+LF D+ R+I
Sbjct: 1 MAAAALREQLNALLSSMFASGLVD-EQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIIS 59
Query: 60 NIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+ L VDF ++D +HQ KGS +S+GA+KVK C QFR+ C N +G
Sbjct: 60 ELAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDG 112
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
M Q++ Q + +S+F +G+LD + L QL+ LQD+ NP FV EVVSLF+ DS R++++
Sbjct: 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFL-QLQQLQDENNPEFVFEVVSLFFDDSERILKD 59
Query: 61 IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+ + + +DF ++D +HQFKGS +SIGA++VK++C FR +C N +
Sbjct: 60 LSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111
>pdb|2OOC|A Chain A, Crystal Structure Of Histidine Phosphotransferase Shpa
(Np_419930.1) From Caulobacter Crescentus At 1.52 A
Resolution
pdb|2OOC|B Chain B, Crystal Structure Of Histidine Phosphotransferase Shpa
(Np_419930.1) From Caulobacter Crescentus At 1.52 A
Resolution
Length = 113
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 43 VEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
V+EV++LF +A ++ T D +H KG+ +GA + + C
Sbjct: 27 VDEVLALFREQAALWAPXLDPTHPG-------WKDAVHTVKGAARGVGAFNLGEVC---- 75
Query: 103 EYCNAG 108
E C AG
Sbjct: 76 ERCEAG 81
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 41 NFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG----SCSSIGAKKVKD 96
N + E+++L + A+++ + Q + + PVD LD + F G + IG VK+
Sbjct: 181 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 97 ACSQ 100
A Q
Sbjct: 241 ALLQ 244
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 41 NFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG----SCSSIGAKKVKD 96
N + E+++L + A+++ + Q + + PVD LD + F G + IG VK+
Sbjct: 181 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 97 ACSQ 100
A Q
Sbjct: 241 ALLQ 244
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 41 NFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG----SCSSIGAKKVKD 96
N + E+++L + A+++ + Q + + PVD LD + F G + IG VK+
Sbjct: 183 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 242
Query: 97 ACSQ 100
A Q
Sbjct: 243 ALLQ 246
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 41 NFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG----SCSSIGAKKVKD 96
N + E+++L + A+++ + Q + + PVD LD + F G + IG VK+
Sbjct: 181 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 97 ACSQ 100
A Q
Sbjct: 241 ALLQ 244
>pdb|3V68|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pf2050, A Member
Of Duf2666 Family Protein
Length = 252
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 53 DSARLIQNIEQTLSNRPVDFSRLDD--ILHQFKGSCSSIGAKKVKDACSQFREY 104
D ARL+ +I +T N+ DF+ +DD I+ F G +++K+ FRE+
Sbjct: 162 DIARLLASINETAVNKIKDFADVDDKKIVEYFGGFKKVKKEEEIKEIVQLFREF 215
>pdb|3IQT|A Chain A, Structure Of The Hpt Domain Of Sensor Protein Bara From
Escherichia Coli Cft073
Length = 123
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAG 108
L D++H+ GSC G + K+ C + +G
Sbjct: 61 LVDLIHKLHGSCGYSGVPRXKNLCQLIEQQLRSG 94
>pdb|2LD6|A Chain A, Solution Structure Of Histidine Phosphotransfer Domain
Of Chea
Length = 139
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 42 FVEEVVSLFYSDSARLIQNIEQT---LSNRPVDFSRLDD---ILHQFKGSCSSIGAKKVK 95
+EE + +F ++ +QN+ T L P D +++ LH KG ++G +
Sbjct: 1 MMEEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMA 60
Query: 96 DAC 98
C
Sbjct: 61 KLC 63
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 71 DFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ + LD++ H KGS +++G +++ C + +
Sbjct: 53 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQ 84
>pdb|1OXB|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|C Chain C, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|E Chain E, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|G Chain G, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|I Chain I, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|K Chain K, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 166
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 71 DFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ + LD++ H KGS +++G +++ C + +
Sbjct: 54 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQ 85
>pdb|2R25|A Chain A, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 167
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 71 DFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ + LD++ H KGS +++G +++ C + +
Sbjct: 55 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQ 86
>pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|B Chain B, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|C Chain C, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form)
Length = 168
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 71 DFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ + LD++ H KGS +++G +++ C + +
Sbjct: 55 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQ 86
>pdb|1C02|A Chain A, Crystal Structure Of Yeast Ypd1p
pdb|1C02|B Chain B, Crystal Structure Of Yeast Ypd1p
Length = 166
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 71 DFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ + LD++ H KGS +++G +++ C + +
Sbjct: 54 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQ 85
>pdb|3ROS|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Lactobacillus Acidophilus
Length = 484
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 36 DDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRP--VDFSRLDDILHQFKGSCSSIGA 91
DDA+P + V+ + AR + + S++ V+ SR D++LH+ K S++ A
Sbjct: 242 DDADPQVLRNVL-----NDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKA 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,097,704
Number of Sequences: 62578
Number of extensions: 107955
Number of successful extensions: 274
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 32
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)