BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033727
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
Query: 20 QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDIL 79
QGYLD EQ ++LE+LQDDANPNFVEEV +L++ DSARLI NI+Q L DF+RLD +
Sbjct: 9 QGYLD-EQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYM 67
Query: 80 HQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
HQFKGS +SIGA KVK C+ FREYC AGNAEG
Sbjct: 68 HQFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Query: 5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
QLQ Q SL+ QG+LD +Q +L+ LQDD +P+FV EV+SLF+ D +LI N+ +
Sbjct: 7 QLQRQFRDYTISLYQQGFLD-DQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65
Query: 65 L-SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
L + VDFS++ +HQ KGS SS+GAK+VK C F+E C A N EG
Sbjct: 66 LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 4/110 (3%)
Query: 5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
QLQ Q SL+ QG+LD+ Q +L LQD+ P+FV EVVSLF+ D ++LI + +
Sbjct: 8 QLQRQFQDYIVSLYQQGFLDN-QFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66
Query: 65 LSNRP--VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
L RP VDF ++D +HQ KGS SS+GA++VK+ C F+E C+ N EG
Sbjct: 67 LE-RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
QLQ + SL+ QG+LD +Q +L+ LQD+ +P+FV EVV+LF+ D +LI N+ +
Sbjct: 7 QLQRRFCDFTISLYHQGFLD-DQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARA 65
Query: 65 LSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
L VDF + +HQ KGS SS+GAK+VK C +E C++ N EG
Sbjct: 66 LDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQ 59
M + L+ Q+ + S+F QG +D EQ QL+ LQD+ P FV EVV+LF D+ R+I
Sbjct: 1 MAAAALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIIN 59
Query: 60 NIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
I L V+F ++D +HQ KGS +S+GA+KVK C QFR++C + +G
Sbjct: 60 EIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 15 RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSR 74
+SLF +G LDS+ L + QD++NP+FV +VV+LF+ DS R++ ++ +L + VDF +
Sbjct: 15 KSLFLEGILDSQFLQLQQL-QDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKK 73
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+D +HQ KGS SSIGA++VK+AC FR +C N E
Sbjct: 74 VDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
+ ++LQ + + SLF QG + EQ +QL+ LQD+ +PNFV +V+++++ +S +L++N
Sbjct: 4 LGVDRLQADINRLLASLFHQG-VLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRN 62
Query: 61 IEQTLSNRPV-DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+ L +R D+ ++ L+Q GS SSIGA++V++ C FR N G
Sbjct: 63 LRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115
>sp|P58356|TORS_ECO57 Sensor protein TorS OS=Escherichia coli O157:H7 GN=torS PE=3 SV=1
Length = 914
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 43 VEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ E ++LF + L+ I+ ++ D ++ HQ K SCSS+G + C+Q
Sbjct: 825 IHEWLALFTQHALPLLDEID--IARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLE 882
Query: 103 E 103
+
Sbjct: 883 Q 883
>sp|A4G5V4|Y1735_HERAR UPF0061 protein HEAR1735 OS=Herminiimonas arsenicoxydans
GN=HEAR1735 PE=3 SV=1
Length = 500
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 11 LYMRRSLFDQGYLDSEQLIQLEDLQDDA--------NPNFV----------EEVVSLFYS 52
L++ R+ FD L E +QLE+ DDA NP +V E+ + +S
Sbjct: 402 LFLDRAAFDDWALQYELRLQLENSDDDARKLAMHAVNPKYVLRNYLAQIAIEKAQNKDFS 461
Query: 53 DSARLIQNIEQTLSNRPVD--FSRL-DDILHQFKGSCSS 88
+ A+L+Q +E+ +P + ++ L D + + SCSS
Sbjct: 462 EVAKLLQVLEKPFDEQPENEKYAALPPDWANDLEVSCSS 500
>sp|Q43155|GLTB_SPIOL Ferredoxin-dependent glutamate synthase, chloroplastic OS=Spinacia
oleracea PE=1 SV=3
Length = 1517
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 62 EQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+Q L+NRPV S L D+L +FK + I KV+ A S +C G + G
Sbjct: 827 QQHLANRPV--SVLRDLL-EFKSDRAPISVGKVEPATSIVERFCTGGMSLG 874
>sp|Q9ZNZ7|GLTB1_ARATH Ferredoxin-dependent glutamate synthase 1, chloroplastic
OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=2
Length = 1648
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 62 EQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
+Q LSNRPV+ R D+L +FK + I KV+ A + + +C G + G
Sbjct: 958 QQHLSNRPVNVLR--DLL-EFKSDRAPIPVGKVEPAVAIVQRFCTGGMSLG 1005
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1
Length = 1063
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 23 LDSEQLIQLEDLQDDANPNFVEEVVSLFYS---DSARLIQNIEQTLSNRPVDFSRLDDIL 79
L S++ +L D + N ++++V + Y+ + RL Q+I TL P ++R+D IL
Sbjct: 5 LTSDEAGKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTLKEHPEAWTRVDSIL 64
>sp|P33562|T2BB_BACIU Type-2 restriction enzyme BsuBI OS=Bacillus subtilis GN=hsdBR PE=4
SV=1
Length = 316
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 21 GYLDSEQLIQLEDLQDDAN--PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDI 78
GY D E L QL + D P+ V Y + + IE S+ PVD R +++
Sbjct: 205 GYFDEELLRQLGVVIDSHGKMPDVV------IYFPEKKWLLLIESVTSHGPVDHKRHEEL 258
Query: 79 LHQFKGSCSSI 89
F GS + I
Sbjct: 259 AKLFNGSTAGI 269
>sp|Q9P6R4|MU172_SCHPO Meiotically up-regulated gene 172 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug172 PE=1 SV=1
Length = 331
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 2 NSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFY-----SDSAR 56
N + ++ +LY+ +SLF +G + +E+L D++D+ N +V++ Y +D R
Sbjct: 9 NPSNIEESLLYINKSLFSKGVIQAEKLRLSHDIRDNCN------IVNIIYRLLRATDEER 62
Query: 57 L 57
L
Sbjct: 63 L 63
>sp|B7K110|SECA_CYAP8 Protein translocase subunit SecA OS=Cyanothece sp. (strain PCC
8801) GN=secA PE=3 SV=1
Length = 935
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 19 DQGYLDSEQLIQLEDLQDDANP--NFVEEVV---SLFYSDSARLIQNIE----QTLSNRP 69
D G+ +EQL+ ++DL D NP +++ + LF D +I+N E + R
Sbjct: 274 DAGFEKAEQLLNVQDLYDQDNPWAHYIFNAIKAKELFTKDVNYMIRNNEIVIVDEFTGRV 333
Query: 70 VDFSRLDDILHQ 81
+ R D LHQ
Sbjct: 334 LPGRRWSDGLHQ 345
>sp|P39453|TORS_ECOLI Sensor protein TorS OS=Escherichia coli (strain K12) GN=torS PE=1
SV=4
Length = 914
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 43 VEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFR 102
+ E + LF + L+ I+ ++ D ++ HQ K SCSS+G C+Q
Sbjct: 825 IHEWLVLFTQHALPLLDEID--IARASQDSEKIKRAAHQLKSSCSSLGMHIASQLCAQLE 882
Query: 103 E 103
+
Sbjct: 883 Q 883
>sp|B1X0K6|SECA_CYAA5 Protein translocase subunit SecA OS=Cyanothece sp. (strain ATCC
51142) GN=secA PE=3 SV=1
Length = 933
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 19 DQGYLDSEQLIQLEDLQDDANP--NFVEEVV---SLFYSDSARLIQNIE----QTLSNRP 69
DQG+ +EQL+ + DL D NP +++ + LF D +++N E + R
Sbjct: 274 DQGFEKAEQLLGVGDLYDQENPWAHYIFNAIKAKELFTKDVNYIVKNKEVVIVDEFTGRV 333
Query: 70 VDFSRLDDILHQ 81
+ R D LHQ
Sbjct: 334 LAGRRWSDGLHQ 345
>sp|P15179|SYDM_YEAST Aspartate--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSD1 PE=1 SV=1
Length = 658
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 32 EDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGA 91
EDL+ D P F + + + +++S +++ IE+T+S FS+ +L + + A
Sbjct: 250 EDLRADRQPEFTQVDMEMAFANSEDVMKIIEKTVSGVWSKFSKKRGLL-TLDSKGTLVPA 308
Query: 92 KKVKDACSQFR 102
KK S FR
Sbjct: 309 KKENGTVSIFR 319
>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia
coli (strain K12) GN=barA PE=1 SV=1
Length = 918
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN 109
L D++H+ GSC G ++K+ C + +G
Sbjct: 856 LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGT 890
>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA
PE=1 SV=1
Length = 918
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN 109
L D++H+ GSC G ++K+ C + +G
Sbjct: 856 LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGT 890
>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O157:H7 GN=barA PE=3 SV=1
Length = 918
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN 109
L D++H+ GSC G ++K+ C + +G
Sbjct: 856 LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGT 890
>sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella
flexneri GN=barA PE=3 SV=1
Length = 918
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 75 LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN 109
L D++H+ GSC G ++K+ C + +G
Sbjct: 856 LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGT 890
>sp|P39387|YJIP_ECOLI Putative uncharacterized protein YjiP OS=Escherichia coli (strain
K12) GN=yjiP PE=5 SV=2
Length = 306
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
Q + +++ + + + GY+ EQ I LQ+ A+P +++++ L SA +Q + Q
Sbjct: 239 QHRERIMTIAERIHNDGYIKGEQRILRLLLQNGADPEWIQKITGL----SAEQMQALRQP 294
Query: 65 LSNR 68
L R
Sbjct: 295 LPER 298
>sp|Q99ZU0|MNME_STRP1 tRNA modification GTPase MnmE OS=Streptococcus pyogenes serotype M1
GN=mnmE PE=3 SV=1
Length = 458
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 24 DSEQLIQLEDLQDDANP---------NFVEEVVSLFYSDSARLIQNIEQTLSN 67
D EQ I+LE L DD P N +E+ ++ + D+A L++ LSN
Sbjct: 341 DLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSN 393
>sp|P0DG23|MNME_STRPQ tRNA modification GTPase MnmE OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=mnmE PE=3 SV=1
Length = 458
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 24 DSEQLIQLEDLQDDANP---------NFVEEVVSLFYSDSARLIQNIEQTLSN 67
D EQ I+LE L DD P N +E+ ++ + D+A L++ LSN
Sbjct: 341 DLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSN 393
>sp|P0DG22|MNME_STRP3 tRNA modification GTPase MnmE OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=mnmE PE=3 SV=1
Length = 458
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 24 DSEQLIQLEDLQDDANP---------NFVEEVVSLFYSDSARLIQNIEQTLSN 67
D EQ I+LE L DD P N +E+ ++ + D+A L++ LSN
Sbjct: 341 DLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSN 393
>sp|A2REM7|MNME_STRPG tRNA modification GTPase MnmE OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=mnmE PE=3 SV=1
Length = 458
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 24 DSEQLIQLEDLQDDANP---------NFVEEVVSLFYSDSARLIQNIEQTLSN 67
D EQ I+LE L DD P N +E+ ++ + D+A L++ LSN
Sbjct: 341 DLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSN 393
>sp|Q1JH22|MNME_STRPD tRNA modification GTPase MnmE OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=mnmE PE=3 SV=1
Length = 458
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 24 DSEQLIQLEDLQDDANP---------NFVEEVVSLFYSDSARLIQNIEQTLSN 67
D EQ I+LE L DD P N +E+ ++ + D+A L++ LSN
Sbjct: 341 DLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSN 393
>sp|Q8P161|MNME_STRP8 tRNA modification GTPase MnmE OS=Streptococcus pyogenes serotype
M18 (strain MGAS8232) GN=mnmE PE=3 SV=1
Length = 458
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 24 DSEQLIQLEDLQDDANP---------NFVEEVVSLFYSDSARLIQNIEQTLSN 67
D EQ I+LE L DD P N +E+ ++ + D+A L++ LSN
Sbjct: 341 DLEQKIELEQLPDDYIPISVLTNQNINLIEDRINQLFFDNAGLVEQDATYLSN 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,243,213
Number of Sequences: 539616
Number of extensions: 1413753
Number of successful extensions: 4318
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4285
Number of HSP's gapped (non-prelim): 42
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)