Query 033727
Match_columns 112
No_of_seqs 226 out of 1016
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 2.3E-29 8E-34 173.1 11.0 110 1-111 1-110 (153)
2 1yvi_A Histidine-containing ph 99.9 1.3E-27 4.6E-32 163.3 10.6 108 3-111 3-111 (149)
3 2r25_A Phosphorelay intermedia 99.9 7E-24 2.4E-28 147.2 12.1 91 16-109 2-93 (167)
4 2a0b_A HPT domain; sensory tra 99.8 1.4E-21 4.7E-26 129.4 4.5 90 16-110 5-94 (125)
5 1y6d_A Phosphorelay protein LU 99.8 3.2E-20 1.1E-24 122.7 3.5 88 19-111 8-95 (120)
6 3myf_A Sensor protein; HPT, hi 99.8 1.1E-18 3.9E-23 115.1 10.8 87 18-110 1-87 (119)
7 3iqt_A Signal transduction his 99.8 1.3E-18 4.3E-23 115.6 9.4 87 18-110 10-96 (123)
8 2ooc_A Histidine phosphotransf 99.6 1.1E-16 3.7E-21 104.7 4.8 78 19-107 7-84 (113)
9 1sr2_A Putative sensor-like hi 99.6 8.1E-16 2.8E-20 101.1 5.2 70 39-110 29-98 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 3E-14 1E-18 91.3 7.5 66 43-110 3-79 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 6.5E-13 2.2E-17 89.4 8.0 65 44-110 3-78 (139)
12 2lch_A Protein OR38; structura 99.4 9.8E-13 3.3E-17 85.4 6.9 66 44-109 5-79 (113)
13 1i5n_A Chemotaxis protein CHEA 99.4 5.3E-13 1.8E-17 90.5 5.6 67 44-110 6-81 (146)
14 3kyj_A CHEA3, putative histidi 99.1 1.1E-10 3.6E-15 79.1 6.2 63 43-105 9-77 (144)
15 2lp4_A Chemotaxis protein CHEA 98.9 2.1E-09 7.2E-14 77.2 6.7 63 44-106 6-74 (225)
16 3hho_A CO-chaperone protein HS 81.6 8.3 0.00029 25.9 7.4 43 40-84 115-157 (174)
17 1gp8_A Protein (scaffolding pr 78.8 5.1 0.00017 20.7 4.4 24 59-84 15-38 (40)
18 3uo3_A J-type CO-chaperone JAC 76.5 14 0.00047 25.1 7.3 43 39-83 119-161 (181)
19 3ls0_A SLL1638 protein, PSBQ; 76.2 4.3 0.00015 26.6 4.4 32 52-85 33-65 (133)
20 1fpo_A HSC20, chaperone protei 75.8 15 0.00052 24.6 8.0 61 21-83 85-152 (171)
21 3zsu_A TLL2057 protein, cyanoq 74.5 3.1 0.00011 27.2 3.4 32 52-85 31-62 (130)
22 2gs4_A Protein YCIF; stress pr 72.6 5.1 0.00017 27.0 4.2 63 1-67 1-64 (166)
23 3bvo_A CO-chaperone protein HS 70.3 23 0.00077 24.5 7.3 42 40-83 150-191 (207)
24 2gyq_A YCFI, putative structur 66.2 7.5 0.00026 26.3 4.0 62 2-67 9-71 (173)
25 3zsu_A TLL2057 protein, cyanoq 64.9 25 0.00084 22.9 6.1 59 26-86 35-93 (130)
26 2cw9_A Translocase of inner mi 62.5 5.7 0.00019 27.2 2.9 63 27-108 41-104 (194)
27 2di0_A Activating signal coint 58.6 10 0.00035 22.1 3.1 37 26-62 15-51 (71)
28 2p1h_A APAF-1, apoptotic prote 53.8 19 0.00066 21.2 3.9 64 12-79 26-89 (94)
29 1h3o_B Transcription initiatio 52.1 34 0.0012 20.1 5.2 46 7-64 8-53 (76)
30 3ls0_A SLL1638 protein, PSBQ; 46.3 35 0.0012 22.3 4.4 58 26-85 37-95 (133)
31 2f4m_B UV excision repair prot 45.0 22 0.00074 20.0 2.9 37 26-63 11-47 (61)
32 3do9_A UPF0302 protein BA_1542 44.9 64 0.0022 22.0 5.9 31 55-87 152-182 (188)
33 2rg8_A Programmed cell death p 44.7 33 0.0011 22.8 4.3 48 1-52 4-51 (165)
34 2p06_A Hypothetical protein AF 38.6 64 0.0022 19.5 4.5 20 58-79 69-88 (114)
35 3hc1_A Uncharacterized HDOD do 37.5 53 0.0018 23.5 4.8 94 1-100 7-100 (305)
36 3ggo_A Prephenate dehydrogenas 36.0 1.1E+02 0.0038 21.9 6.4 23 55-79 281-303 (314)
37 3m50_P N.plumbaginifolia H+-tr 33.7 9 0.00031 18.8 0.1 10 77-86 2-11 (31)
38 4etr_A Putative uncharacterize 31.7 1E+02 0.0035 19.7 6.3 65 42-106 41-112 (153)
39 2kjg_A Archaeal protein SSO690 31.2 89 0.003 19.0 4.2 36 21-56 2-37 (99)
40 2qsf_X RAD23, UV excision repa 30.8 42 0.0014 22.7 3.1 41 22-63 28-69 (171)
41 1vyk_A Oxygen-evolving enhance 30.0 53 0.0018 21.7 3.4 29 51-81 52-80 (149)
42 2l81_A Enhancer of filamentati 29.6 88 0.003 21.3 4.5 86 17-103 11-107 (176)
43 1pve_A HHR23B, UV excision rep 26.4 16 0.00056 21.3 0.3 36 27-63 14-49 (72)
44 3f0n_A Mevalonate pyrophosphat 26.4 1.1E+02 0.0039 23.4 5.1 31 46-78 238-269 (414)
45 3ogh_B Protein YCIE; iron-bind 25.3 1.3E+02 0.0044 20.1 4.7 62 3-68 3-66 (171)
46 2qf9_A Putative secreted prote 24.5 1.6E+02 0.0054 19.6 7.1 58 21-83 94-151 (179)
47 3ygs_P Procaspase 9; apoptosis 24.2 1.2E+02 0.004 18.0 5.6 64 4-67 8-80 (97)
48 3qk9_A Mitochondrial import in 22.2 77 0.0026 22.2 3.2 55 39-108 72-127 (222)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=99.96 E-value=2.3e-29 Score=173.07 Aligned_cols=110 Identities=43% Similarity=0.829 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 033727 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80 (112)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (112)
|...+|+.++.+|+++++++++|| ++|.+|++|.++++|+|+.++|..|++++++.+..|+.+++.++.|+..+.+.||
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD-~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH 79 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLD-GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH 79 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 778899999999999999999999 8899999998888999999999999999999999999999987779999999999
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHHHHHccCCC
Q 033727 81 QFKGSCSSIGAKKVKDACSQFREYCNAGNAE 111 (112)
Q Consensus 81 ~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~~ 111 (112)
+|||||+|+||.+|+.+|.+||.+|+.|+.+
T Consensus 80 ~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~ 110 (153)
T 3us6_A 80 QFKGSSASIGAQRVKNSCVAFRNFCEEQNID 110 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999864
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.95 E-value=1.3e-27 Score=163.34 Aligned_cols=108 Identities=41% Similarity=0.733 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 033727 3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDAN-PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81 (112)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~-~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (112)
..+|+.|+..++++++++++||+. |.+|++|.++++ ++|+.++|..|++++++.+..|+.+++.+++|+..+.+.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~-~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 81 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQ-FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHH-HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHH-HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 468999999999999999999987 999999966667 999999999999999999999999999875689999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHHHHccCCC
Q 033727 82 FKGSCSSIGAKKVKDACSQFREYCNAGNAE 111 (112)
Q Consensus 82 LKGsa~~lGa~~l~~~~~~lE~~~~~~~~~ 111 (112)
|||||+|+||.+|+.+|.++|.+++.++.+
T Consensus 82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~ 111 (149)
T 1yvi_A 82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRD 111 (149)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999998754
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.91 E-value=7e-24 Score=147.25 Aligned_cols=91 Identities=16% Similarity=0.389 Sum_probs=87.3
Q ss_pred cccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHhhhhhhhhhcHHHH
Q 033727 16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLS-NRPVDFSRLDDILHQFKGSCSSIGAKKV 94 (112)
Q Consensus 16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~l 94 (112)
+|.++++||+.+|.+|+++.+++ |+|+.++|..|++++++.+..|++|++ .+ |+..+..++|+|||||+|+||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 57788999999999999998766 999999999999999999999999999 77 999999999999999999999999
Q ss_pred HHHHHHHHHHHHccC
Q 033727 95 KDACSQFREYCNAGN 109 (112)
Q Consensus 95 ~~~~~~lE~~~~~~~ 109 (112)
+.+|.+||.+|+.++
T Consensus 79 ~~~C~~le~~~r~~n 93 (167)
T 2r25_A 79 AWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999998
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.84 E-value=1.4e-21 Score=129.43 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=82.4
Q ss_pred cccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 033727 16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK 95 (112)
Q Consensus 16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~ 95 (112)
.+.+.++||++.|.+|.++. +++++.+++..|++++++.+..|+.++..+ |+..+.+.||+|||+|+++|+.+|+
T Consensus 5 ~~~~~~~lD~~~l~~l~~~~---g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~ 79 (125)
T 2a0b_A 5 NSKSEALLDIPMLEQYLELV---GPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ 79 (125)
T ss_dssp -CHHHHHSCHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccCCHHHHHHHHHHh---CHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34556789999999998877 789999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 033727 96 DACSQFREYCNAGNA 110 (112)
Q Consensus 96 ~~~~~lE~~~~~~~~ 110 (112)
.+|+.+|..++.++.
T Consensus 80 ~~~~~lE~~~~~~~~ 94 (125)
T 2a0b_A 80 QLGQQIQSPDLPAWE 94 (125)
T ss_dssp HHHHHHTCTTSTTHH
T ss_pred HHHHHHHHHHHcCCH
Confidence 999999998887653
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.79 E-value=3.2e-20 Score=122.70 Aligned_cols=88 Identities=16% Similarity=0.297 Sum_probs=79.2
Q ss_pred CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 033727 19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98 (112)
Q Consensus 19 ~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~ 98 (112)
.-+.+|+.++.+|+... +++++.+++..|++++++.+..|+++.+.. |+..+.+.+|+|||||+++|+.+|+.+|
T Consensus 8 ~~~~~d~~~l~~L~~~~---g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~ 82 (120)
T 1y6d_A 8 NTDVLNQQKIEELSAEI---GSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERA 82 (120)
T ss_dssp CCTTTTTTHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred CCccccHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHH
Confidence 45788988888887655 689999999999999999999999987777 8888999999999999999999999999
Q ss_pred HHHHHHHHccCCC
Q 033727 99 SQFREYCNAGNAE 111 (112)
Q Consensus 99 ~~lE~~~~~~~~~ 111 (112)
.++|..+|.|+..
T Consensus 83 ~~lE~~~r~g~~~ 95 (120)
T 1y6d_A 83 IAIDKKAKANQLQ 95 (120)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhCCChh
Confidence 9999999998653
No 6
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.79 E-value=1.1e-18 Score=115.10 Aligned_cols=87 Identities=14% Similarity=0.289 Sum_probs=77.0
Q ss_pred cCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHH
Q 033727 18 FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDA 97 (112)
Q Consensus 18 ~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~ 97 (112)
|+..++|++. +..+. .++++++.+++..|+++.++.+..|++++..+ ||+.+.+.+|+|||+|+++|+++|..+
T Consensus 1 ~~~~~~D~~~---~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~ 74 (119)
T 3myf_A 1 FDLHTLNWDL---CLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRL 74 (119)
T ss_dssp -CTTTCCHHH---HHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CCccccCHHH---HHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4567899764 33323 34899999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHccCC
Q 033727 98 CSQFREYCNAGNA 110 (112)
Q Consensus 98 ~~~lE~~~~~~~~ 110 (112)
|..||++++.|+.
T Consensus 75 ~~~LE~~~r~~~~ 87 (119)
T 3myf_A 75 CQEIESALKRQTP 87 (119)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999863
No 7
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.78 E-value=1.3e-18 Score=115.60 Aligned_cols=87 Identities=16% Similarity=0.340 Sum_probs=77.5
Q ss_pred cCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHH
Q 033727 18 FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDA 97 (112)
Q Consensus 18 ~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~ 97 (112)
...|++|++.. ..+. .+++++..+|+.+|+++.++.+..|++++..+ |++.+.+++|+|||+|+++|+.+|..+
T Consensus 10 ~~~~~~D~~~~---l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~ 83 (123)
T 3iqt_A 10 NPNATLDWQLA---LRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNL 83 (123)
T ss_dssp CGGGTCCHHHH---HHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred cCCCccCHHHH---HHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34578996643 3333 35899999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHccCC
Q 033727 98 CSQFREYCNAGNA 110 (112)
Q Consensus 98 ~~~lE~~~~~~~~ 110 (112)
|..||+++++|+.
T Consensus 84 c~~LE~~~r~g~~ 96 (123)
T 3iqt_A 84 CQLIEQQLRSGTK 96 (123)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999864
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.65 E-value=1.1e-16 Score=104.70 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=65.7
Q ss_pred CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 033727 19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98 (112)
Q Consensus 19 ~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~ 98 (112)
+.+.||.+.+.. +. .++++|+.+|+..|++++++.+..|..+ .. || .+.||+|||||++|||.+|..+|
T Consensus 7 ~~~~iD~~~L~~---~~-~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c 75 (113)
T 2ooc_A 7 ISGAVDFAYLEG---FA-AGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVC 75 (113)
T ss_dssp --CCSCHHHHHH---HT-TTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCcCHHHHHh---Hh-CCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHH
Confidence 457899766554 33 3589999999999999999999999887 34 65 79999999999999999999999
Q ss_pred HHHHHHHHc
Q 033727 99 SQFREYCNA 107 (112)
Q Consensus 99 ~~lE~~~~~ 107 (112)
.++|..++.
T Consensus 76 ~~lE~~~~~ 84 (113)
T 2ooc_A 76 ERCEAGQES 84 (113)
T ss_dssp HHHHTTSSC
T ss_pred HHHHHHhhh
Confidence 999987754
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.60 E-value=8.1e-16 Score=101.08 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccCC
Q 033727 39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA 110 (112)
Q Consensus 39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~ 110 (112)
.+..-.+++..|+++.++.+..|.+++..+ |+..+++.||+|||+++++|+.+++.+|.++|++++.++.
T Consensus 29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~ 98 (116)
T 1sr2_A 29 AQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV 98 (116)
T ss_dssp HHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred chhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence 355667789999999999999999999999 9999999999999999999999999999999999998864
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.53 E-value=3e-14 Score=91.33 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HccCC
Q 033727 43 VEEVVSLFYSDSARLIQNIEQTLS--------NRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNA 110 (112)
Q Consensus 43 ~~eli~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~---~~~~~ 110 (112)
+.+++..|++++++.+..|+.++. .. ++..+.+.+|+|||+|+++|+..+..+|+.+|..+ +.|+.
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~ 79 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCC
Confidence 457999999999999999999985 33 56899999999999999999999999999999876 56553
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.42 E-value=6.5e-13 Score=89.36 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HccCC
Q 033727 44 EEVVSLFYSDSARLIQNIEQTLS--------NRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNA 110 (112)
Q Consensus 44 ~eli~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~---~~~~~ 110 (112)
.+++..|++++++.+..|+.++. .. ++..+.+.+|+|||+|+++|+..+..+|+.+|..+ +.|..
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~ 78 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 78 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999973 34 67899999999999999999999999999999865 56553
No 12
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.38 E-value=9.8e-13 Score=85.39 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHccC
Q 033727 44 EEVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGN 109 (112)
Q Consensus 44 ~eli~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~---~~~~~ 109 (112)
.+++..|++++++.+..|++++.. .|.| +..+.+.+|+|||+|+++|+..+..+|+.+|.. .+.|.
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~ 79 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSE 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCC
Confidence 468999999999999999998632 2224 467899999999999999999999999999974 44554
No 13
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.38 E-value=5.3e-13 Score=90.54 Aligned_cols=67 Identities=15% Similarity=0.370 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC---CCC---CHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHccCC
Q 033727 44 EEVVSLFYSDSARLIQNIEQTLSN---RPV---DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGNA 110 (112)
Q Consensus 44 ~eli~~F~~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~---~~~~~~ 110 (112)
.+++..|++++++.+..|+.++.. .|. ++..+.+.+|+|||+|+++|+..+..+|+.+|.. .+.|..
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~ 81 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM 81 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 368999999999999999999832 122 4589999999999999999999999999999987 566653
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.12 E-value=1.1e-10 Score=79.14 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---CCCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 033727 43 VEEVVSLFYSDSARLIQNIEQTLS---NRPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC 105 (112)
Q Consensus 43 ~~eli~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~ 105 (112)
..+++..|++++.+.+..|+..+. +.|.| ...+.+.+|+|||+|+++|+..+..+|+.+|...
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll 77 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI 77 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence 457899999999999999999753 33334 4578999999999999999999999999999865
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.92 E-value=2.1e-09 Score=77.22 Aligned_cols=63 Identities=16% Similarity=0.342 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCCCH---HHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 033727 44 EEVVSLFYSDSARLIQNIEQTLS---NRPVDF---SRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN 106 (112)
Q Consensus 44 ~eli~~F~~~~~~~l~~L~~a~~---~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~ 106 (112)
.++++.|++++.+.+..|++.+. +.|.|. ..+.|.+|+|||+|+.+|+..+..+|+.+|....
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~ 74 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD 74 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHH
Confidence 35889999999999999999753 344453 5778999999999999999999999999997653
No 16
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=81.63 E-value=8.3 Score=25.92 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhh
Q 033727 40 PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG 84 (112)
Q Consensus 40 ~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (112)
..-+.++....-......+..|..++..+ ||..+...+.+||=
T Consensus 115 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~f 157 (174)
T 3hho_A 115 EAALVAFDTKVTAMQRHYLAQLQGQLAQS--EWLAAADQIRKLKF 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHH
Confidence 45566777777777788888999999999 99999988888773
No 17
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=78.85 E-value=5.1 Score=20.71 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhhhh
Q 033727 59 QNIEQTLSNRPVDFSRLDDILHQFKG 84 (112)
Q Consensus 59 ~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (112)
.+|--|..++ |+++++.+=|+||+
T Consensus 15 QqiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 15 KQMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 3455678889 99999999999987
No 18
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=76.45 E-value=14 Score=25.07 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727 39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK 83 (112)
Q Consensus 39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
+..-+.++....-.........|.++++.+ ||..+...+.+||
T Consensus 119 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 119 DEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK 161 (181)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 344456666666777777788889999999 9999988887776
No 19
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=76.21 E-value=4.3 Score=26.61 Aligned_cols=32 Identities=6% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHHHH-HHHHhhCCCCCHHHHHHHHHhhhhh
Q 033727 52 SDSARLIQN-IEQTLSNRPVDFSRLDDILHQFKGS 85 (112)
Q Consensus 52 ~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGs 85 (112)
.++.+.+.+ |...++++ ||..++...|.-=|.
T Consensus 33 ~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~ 65 (133)
T 3ls0_A 33 AVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQ 65 (133)
T ss_dssp HHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTT
T ss_pred HHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHH
Confidence 455677888 99999999 999999999865544
No 20
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=75.81 E-value=15 Score=24.55 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=38.4
Q ss_pred CCCCHHHHH-------HHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727 21 GYLDSEQLI-------QLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK 83 (112)
Q Consensus 21 ~~lD~~~l~-------~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
..+|++-+- .|.+.....+..-+..+....-......+..|..++..+ ||..+...+.+||
T Consensus 85 ~~~d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 85 TVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR 152 (171)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence 567765432 233332222344455555555555566677888999888 9999888887766
No 21
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=74.48 E-value=3.1 Score=27.18 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhh
Q 033727 52 SDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGS 85 (112)
Q Consensus 52 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs 85 (112)
.++.+.+.+|...++++ ||..++...|.-=|.
T Consensus 31 ~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~ 62 (130)
T 3zsu_A 31 EKNAERFADLEVSVAKG--DWQEARNIMRGPLGE 62 (130)
T ss_dssp HHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhhc--chHHHHHHHhchHHH
Confidence 45567789999999999 999999999865554
No 22
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=72.59 E-value=5.1 Score=27.00 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccC-CChHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033727 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDD-ANPNFVEEVVSLFYSDSARLIQNIEQTLSN 67 (112)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~-~~~~~~~eli~~F~~~~~~~l~~L~~a~~~ 67 (112)
|+...|+.-+..+++.+.. .+...+..|..+.+. .+| -+...+..+++++..++..|++.+..
T Consensus 1 m~~~~l~dlf~~~L~D~y~---aE~q~~~al~~~~~~a~~p-~Lk~~l~~h~~eT~~qi~rLe~i~~~ 64 (166)
T 2gs4_A 1 MNMKTIEDVFIHLLSDTYS---AEKQLTRALAKLARATSNE-KLSQAFHAHLEETHGQIERIDQVVES 64 (166)
T ss_dssp --CCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHSCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777778777766 343446666666432 344 46677999999999999999999877
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=70.32 E-value=23 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727 40 PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK 83 (112)
Q Consensus 40 ~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
.+-+.++-..+-....+.+..|.+++..+ ||..+...+.+||
T Consensus 150 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 150 EAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 34455555566666666677888999999 9999988888776
No 24
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=66.18 E-value=7.5 Score=26.33 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHhcccCCCCCCHHHHHHHHcccc-CCChHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033727 2 NSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQD-DANPNFVEEVVSLFYSDSARLIQNIEQTLSN 67 (112)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~-~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~ 67 (112)
+...|+.-+..|++.+.. .+...+..|..+.+ -.+| -+...+..+++++..++..|++.+..
T Consensus 9 ~~~~l~dlf~~~L~Diy~---aE~q~~~aL~~~~~~a~~p-~Lk~~l~~H~~eT~~qi~rLe~i~~~ 71 (173)
T 2gyq_A 9 DIQTMEDLLLHGLRDIYY---AEQQITKALPKMIEQATNR-DLSQGLTSHLEETQKQIERLDQVFKK 71 (173)
T ss_dssp CBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777665 34344666666633 2244 46677999999999999999988653
No 25
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=64.88 E-value=25 Score=22.87 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhh
Q 033727 26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSC 86 (112)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa 86 (112)
+.+.+|..+..+.+..+++-+|..=+.+....+..|...+-.. |-.+...++-.|++.-
T Consensus 35 ~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~--dqk~A~~lak~l~~~L 93 (130)
T 3zsu_A 35 ERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAK--DQPTPTALTRALTDDF 93 (130)
T ss_dssp TTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGG--GSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHh--hHHHHHHHHHHHHHHH
Confidence 3467777776666888888888888888888888887776555 7788888877777664
No 26
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=62.53 E-value=5.7 Score=27.19 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=41.9
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHHHHHH-HHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 033727 27 QLIQLEDLQDDANPNFVEEVVSLFYSDSARL-IQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC 105 (112)
Q Consensus 27 ~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~ 105 (112)
.+..++.+. |.|= ...|++.+... +..|..|..++ |.+.|+.++.. .-+..++.++.+..
T Consensus 41 ~l~~i~~~d----p~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t~----------~~~~~~~~~i~~r~ 101 (194)
T 2cw9_A 41 VLTEILRVD----PAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWCYE----------ATYSQLAHPIQQAK 101 (194)
T ss_dssp HHHHHHHHC----TTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhC----CCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcCH----------HHHHHHHHHHHHHH
Confidence 355555543 3332 47899999998 79999999999 99998876532 33445555555544
Q ss_pred Hcc
Q 033727 106 NAG 108 (112)
Q Consensus 106 ~~~ 108 (112)
..|
T Consensus 102 ~~g 104 (194)
T 2cw9_A 102 ALG 104 (194)
T ss_dssp HTT
T ss_pred HCC
Confidence 443
No 27
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=58.56 E-value=10 Score=22.13 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=31.0
Q ss_pred HHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHH
Q 033727 26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIE 62 (112)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~ 62 (112)
+.+.+++++..+-+..|+..++..|=.+.+..+..|-
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4588899998888999999999999888887776554
No 28
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=53.82 E-value=19 Score=21.20 Aligned_cols=64 Identities=9% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 033727 12 YMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDIL 79 (112)
Q Consensus 12 ~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~a 79 (112)
..+..+...+++..+..+.+..- ....+-...+++....-.+.....+-.++.+. ++..+..+.
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~L 89 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHHH
Confidence 34455556677776666677654 23556666777666666666777777777665 655555443
No 29
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=52.06 E-value=34 Score=20.06 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=30.4
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 033727 7 QHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64 (112)
Q Consensus 7 ~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a 64 (112)
+.++..+++.+.+...+|+++ .+++.++.+.|++++-...-.|...
T Consensus 8 k~~L~~Lv~~idp~~~ld~~v------------ee~ll~lADdFV~~V~~~ac~lAKh 53 (76)
T 1h3o_B 8 KKKLQDLVREVDPNEQLDEDV------------EEMLLQIADDFIESVVTAACQLARH 53 (76)
T ss_dssp HHHHHHHHHHHCSSCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788777777777543 3455566777777777666665554
No 30
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=46.31 E-value=35 Score=22.25 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHH-HHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhh
Q 033727 26 EQLIQ-LEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGS 85 (112)
Q Consensus 26 ~~l~~-L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs 85 (112)
+.+.+ |..+..+.+..+++-+|..=+.+....+..|...+-.. |-.+...++-.|++.
T Consensus 37 ~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~--dqk~A~~lak~l~~~ 95 (133)
T 3ls0_A 37 DGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPK--DQDKAKTLAKEVFGH 95 (133)
T ss_dssp HHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChh--hhHHHHHHHHHHHHH
Confidence 33455 55554444555555555555555555555555544333 445555555444444
No 31
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=44.97 E-value=22 Score=20.01 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=28.8
Q ss_pred HHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 033727 26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (112)
Q Consensus 26 ~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~ 63 (112)
.+|..|+++.. .+|+++..++...-.+.|+.+..|.+
T Consensus 11 Pqf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 46888888853 38999989888888888887776655
No 32
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=44.87 E-value=64 Score=22.05 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhh
Q 033727 55 ARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCS 87 (112)
Q Consensus 55 ~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~ 87 (112)
.+...+|..|++.+ |-+...+++..||---|
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~~~~ 182 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKMLEG 182 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhc
Confidence 36788999999999 99999999998875443
No 33
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=44.65 E-value=33 Score=22.76 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHH
Q 033727 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYS 52 (112)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~ 52 (112)
||.+.++.+....++-.+..+-++ +.+..++++. .|.+...++...+.
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~-Ea~~~l~eL~---~p~~~~~~V~~~I~ 51 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTN-EVAEMLRDLN---LGEMKSGVPVLAVS 51 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHT---CSGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHhC---CcccHHHHHHHHHH
Confidence 466777777777777777766666 6788888886 34444444444443
No 34
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=38.58 E-value=64 Score=19.48 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=16.8
Q ss_pred HHHHHHHhhCCCCCHHHHHHHH
Q 033727 58 IQNIEQTLSNRPVDFSRLDDIL 79 (112)
Q Consensus 58 l~~L~~a~~~~~~D~~~l~~~a 79 (112)
+.+|+.++++. ||+.++...
T Consensus 69 mdelreaveke--dwenlrdel 88 (114)
T 2p06_A 69 MDELREAVEKE--DWENLRDEL 88 (114)
T ss_dssp HHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHH
Confidence 56789999999 999988654
No 35
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=37.48 E-value=53 Score=23.48 Aligned_cols=94 Identities=7% Similarity=0.109 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 033727 1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80 (112)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH 80 (112)
|+.+...+.+..+++.+.+=|.+- ..+.+|.++..+.+.+ +.++... +..-|..-..+-+..+.. +-...+-..
T Consensus 7 ~~~~~~~~~~~~~l~~~~~lP~~p-~~~~~l~~~~~~~~~~-~~~la~~-I~~Dp~Ls~~lLr~aNS~---~~~~~~~I~ 80 (305)
T 3hc1_A 7 RDVETRLTLAREFMSGVDELPTVP-DIVLRIAGKLNDPDVA-IDEVADL-LLQDQVLTARVVHLANSP---LYSAARPIS 80 (305)
T ss_dssp -CHHHHHHHHHHHHHTCSSCCCCC-HHHHHHHHHTTCTTCC-HHHHHHH-HTTCHHHHHHHHHHHHSH---HHHTTSCCC
T ss_pred cccchHHHHHHHHHHhhhhCCCCh-HHHHHHHHHHcCCCCC-HHHHHHH-HHHCHHHHHHHHHHhccc---ccCCCCCCC
Confidence 667788888999999988878887 5555555554322222 2343333 333333334444433332 111122233
Q ss_pred hhhhhhhhhcHHHHHHHHHH
Q 033727 81 QFKGSCSSIGAKKVKDACSQ 100 (112)
Q Consensus 81 ~LKGsa~~lGa~~l~~~~~~ 100 (112)
+++-+-..+|...+..++..
T Consensus 81 si~~Av~~LG~~~l~~l~~~ 100 (305)
T 3hc1_A 81 SIRDAVIYLGLDLLREAIFT 100 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666544
No 36
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=35.95 E-value=1.1e+02 Score=21.91 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHH
Q 033727 55 ARLIQNIEQTLSNRPVDFSRLDDIL 79 (112)
Q Consensus 55 ~~~l~~L~~a~~~~~~D~~~l~~~a 79 (112)
.+.+.+++++++++ |++.+.+.-
T Consensus 281 ~~~l~~l~~~l~~~--d~~~l~~~~ 303 (314)
T 3ggo_A 281 EKSLNHLKELIVRE--AEEELVEYL 303 (314)
T ss_dssp HHHHHHHHHHHHHT--CSHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHH
Confidence 34466777778888 887776553
No 37
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=33.65 E-value=9 Score=18.77 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=7.0
Q ss_pred HHHHhhhhhh
Q 033727 77 DILHQFKGSC 86 (112)
Q Consensus 77 ~~aH~LKGsa 86 (112)
+..|+|||--
T Consensus 2 rElhTLkghv 11 (31)
T 3m50_P 2 RELHTLKGHV 11 (31)
T ss_dssp HHHHCHHHHH
T ss_pred chhhHHHHHH
Confidence 4578888854
No 38
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=31.73 E-value=1e+02 Score=19.72 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCHHHHHHHHHhhhhh----hhhhcHHHHHHHHHHHHHHHH
Q 033727 42 FVEEVVSLFYSDSARLIQNIEQTLSN---RPVDFSRLDDILHQFKGS----CSSIGAKKVKDACSQFREYCN 106 (112)
Q Consensus 42 ~~~eli~~F~~~~~~~l~~L~~a~~~---~~~D~~~l~~~aH~LKGs----a~~lGa~~l~~~~~~lE~~~~ 106 (112)
-+..++..|..+......+|...+.+ .|.+-..+.-.+|+..-. -+.-+-..+...|..-|..+.
T Consensus 41 ~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~lks~~~~~~~~~iL~~~~~gE~~~~ 112 (153)
T 4etr_A 41 QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAK 112 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56778888888888888888886554 244555667777765443 222255667777877776554
No 39
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=31.23 E-value=89 Score=19.00 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHH
Q 033727 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSAR 56 (112)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~ 56 (112)
+++|.+.|-+|+...+..+-+.+..+++..-.+..+
T Consensus 2 SvLdqeEFveLrkfKgkvd~~~v~~IL~eiE~~~rk 37 (99)
T 2kjg_A 2 SILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLRG 37 (99)
T ss_dssp CSCSCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 468888899999887666666666666555555443
No 40
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=30.85 E-value=42 Score=22.72 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=30.4
Q ss_pred CC-CHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 033727 22 YL-DSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (112)
Q Consensus 22 ~l-D~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~ 63 (112)
+. +..+|..|+++.. .+|.++..|+...-++.|..+..|.+
T Consensus 28 L~~~~Pqf~qlRq~vq-qNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 28 IGLTVEDLLSLRQVVS-GNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp CCCCHHHHHHHHHHHH-TCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 44 6678999988853 38998888888777777777666544
No 41
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=30.02 E-value=53 Score=21.69 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 033727 51 YSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81 (112)
Q Consensus 51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 81 (112)
+.++.+.+..++..+++. +|..++...|.
T Consensus 52 Ik~~a~~i~~vk~lI~k~--~W~~vrn~LR~ 80 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDRK--AWPSLQNDLRL 80 (149)
T ss_dssp HHHHHHHHHTTHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cHHHHHHHHHH
Confidence 344555667788999999 99999887764
No 42
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=29.61 E-value=88 Score=21.28 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=42.3
Q ss_pred ccCCCCCCHHH-HHHHHccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhh
Q 033727 17 LFDQGYLDSEQ-LIQLEDLQDDANPNFVEEVVSL------FYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI 89 (112)
Q Consensus 17 ~~~~~~lD~~~-l~~L~~l~~~~~~~~~~eli~~------F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~l 89 (112)
+..+-.+|.+. ++.|.++..+ -..-+..++.. +.+..+..+..|+.+...-..-...+...|+...|.|.+.
T Consensus 11 ~~keL~Ldld~A~E~L~rLQ~~-v~~sVs~Lm~fvs~~WR~~~~le~~i~~I~~a~~~v~~Sl~efL~FArga~~nA~~~ 89 (176)
T 2l81_A 11 MDKRLFLDPDTAIERLQRLQQA-LEMGVSSLMALVTTDWRCYGYMERHINEIRTAVDKVELFLKEYLHFVKGAVANAACL 89 (176)
T ss_dssp SCSSCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHCSSCTTCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55666677664 5665555421 12223332222 1223444455555544332112334556666666777777
Q ss_pred cH----HHHHHHHHHHHH
Q 033727 90 GA----KKVKDACSQFRE 103 (112)
Q Consensus 90 Ga----~~l~~~~~~lE~ 103 (112)
+= .+|......||.
T Consensus 90 ~d~~L~~kl~rqLq~l~d 107 (176)
T 2l81_A 90 PELILHNKMKRELQRVED 107 (176)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhh
Confidence 73 556566665554
No 43
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=26.45 E-value=16 Score=21.28 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=25.5
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 033727 27 QLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63 (112)
Q Consensus 27 ~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~ 63 (112)
+|..|+++.. .+|+++..++...-...|+.+..|.+
T Consensus 14 qf~qlR~~vq-qNP~lL~~lLqqL~~~NPqL~q~I~~ 49 (72)
T 1pve_A 14 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 49 (72)
T ss_dssp TTTTHHHHHT-TCGGGHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 4557777753 38998888888887777776665543
No 44
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=26.44 E-value=1.1e+02 Score=23.41 Aligned_cols=31 Identities=6% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhCCCCCHHHHHHH
Q 033727 46 VVSLFYSD-SARLIQNIEQTLSNRPVDFSRLDDI 78 (112)
Q Consensus 46 li~~F~~~-~~~~l~~L~~a~~~~~~D~~~l~~~ 78 (112)
+.+.++.+ +...+..|..++.++ |++.+.++
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l 269 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQL 269 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 45667777 789999999999999 99988664
No 45
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=25.26 E-value=1.3e+02 Score=20.15 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCHHHHHHHHcccc--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033727 3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQD--DANPNFVEEVVSLFYSDSARLIQNIEQTLSNR 68 (112)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~--~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~ 68 (112)
.=|+++-+..|++.+..- ....+..|..+.. ..+|+ +...+..-++++..++..|++.++.-
T Consensus 3 ~~~~~dlfi~~L~Diy~a---E~Q~~~aL~~ma~~~a~~pe-Lk~a~e~Hl~eT~~qi~rLe~vf~~l 66 (171)
T 3ogh_B 3 AMNRIEHYHDWLRDAHAM---EKQAESMLESMASRIDNYPE-LRARIEQHLSETKNQIVQLETILDRN 66 (171)
T ss_dssp THHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346778888888877663 2233566666653 24665 55669999999999999999987753
No 46
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=24.54 E-value=1.6e+02 Score=19.56 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727 21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK 83 (112)
Q Consensus 21 ~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (112)
+..+...+..|+.+. +.+|=..++...+..-..-+.-.+.++..+ +-..++.+|=.+.
T Consensus 94 gm~~~~~l~~L~~a~---G~~fD~~fl~~MI~HH~~AI~ma~~~~~~g--~dp~lk~lA~~ii 151 (179)
T 2qf9_A 94 GMATDAEMKKLGTLD---GKQAEVYYLQLMTEHHRGGVHMAKGCVERC--TVGVEKRLARGMV 151 (179)
T ss_dssp TCCCHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHcCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 345666788888775 566666677777777777777777777777 6677887775543
No 47
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.18 E-value=1.2e+02 Score=17.96 Aligned_cols=64 Identities=6% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcccCC---------CCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033727 4 NQLQHQVLYMRRSLFDQ---------GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSN 67 (112)
Q Consensus 4 ~~l~~~~~~~~~~~~~~---------~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~ 67 (112)
+.|+..-..+++.+.-. +++..+..+.++.....+..+-..++++....-.+.-...+-.++..
T Consensus 8 ~~L~~~r~~Lv~~l~~~~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 8 RLLRRCRLRLVEELQVDQLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp HHHHHTHHHHHHHCCCTTTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHCcHHHHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 45555555666655433 55555555555543111234555555555555555555555555554
No 48
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=22.20 E-value=77 Score=22.15 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcc
Q 033727 39 NPNFVEEVVSLFYSDSARL-IQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAG 108 (112)
Q Consensus 39 ~~~~~~eli~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~ 108 (112)
+|.|- ...|++.+... +..+..|..++ |.+.|+.+++. ......+..+.+..+.|
T Consensus 72 DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~llse----------~~y~~f~~~i~~r~~~G 127 (222)
T 3qk9_A 72 DPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFSE----------APFNVYAAQQKIFKEQD 127 (222)
T ss_dssp ---CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH----------HHHHHHHHHHHHHHTTT
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcCH----------HHHHHHHHHHHHHHHCC
Confidence 45543 57888888887 67799999999 99988877542 33344445555544444
Done!