BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033728
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GFP|A Chain A, Structure Of The Multidrug Transporter Emrd From
           Escherichia Coli
 pdb|2GFP|B Chain B, Structure Of The Multidrug Transporter Emrd From
           Escherichia Coli
          Length = 375

 Score = 28.9 bits (63), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 30  TLMGVMIICCTLPIMLIYFPQWGGM 54
           TLM   +ICC L  +L++ P W G+
Sbjct: 264 TLMWQSVICCLLAGLLMWIPDWFGV 288


>pdb|2W4S|A Chain A, Novel Rna-Binding Domain In Cryptosporidium Parvum At 2.5
           Angstrom Resolution
 pdb|2W4S|B Chain B, Novel Rna-Binding Domain In Cryptosporidium Parvum At 2.5
           Angstrom Resolution
 pdb|2W4S|C Chain C, Novel Rna-Binding Domain In Cryptosporidium Parvum At 2.5
           Angstrom Resolution
 pdb|2W4S|D Chain D, Novel Rna-Binding Domain In Cryptosporidium Parvum At 2.5
           Angstrom Resolution
          Length = 113

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 52  GGMFCGPSKNMTTEEDYYLSEWN--SKEKQKGFHQSSLKFADNSRSE 96
           GG+FC   K +  E+   + EWN   +E+++  +  ++   +N R +
Sbjct: 66  GGVFCYLLKQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112


>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
           Nucleotide Free Rab21
          Length = 274

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 50  QWGGMFCGPSKNMTTEEDYYLS 71
           Q+   FC PS+ MT E+ YY +
Sbjct: 213 QYITRFCNPSRLMTGEDGYYFT 234


>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
           Aurescens
 pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
           Aurescens
          Length = 482

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 64  TEEDYYLSEWNSKEKQKGFHQSS 86
           T E YY S+W S+E  +G + SS
Sbjct: 377 TPEVYYESDWGSEEWTRGAYASS 399


>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein From
           Glyoxalase Family
          Length = 338

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 65  EEDYYLSEWNSKEKQKGFHQSSL 87
           + D  L+ W  + KQ+GFH S +
Sbjct: 252 KNDAELAYWEEQVKQRGFHSSGI 274


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,501,222
Number of Sequences: 62578
Number of extensions: 130883
Number of successful extensions: 220
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)