Query 033728
Match_columns 112
No_of_seqs 142 out of 199
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00028 nitrate transmembrane 99.7 4E-17 8.6E-22 133.8 5.3 90 1-91 387-476 (476)
2 PF01118 Semialdhyde_dh: Semia 70.0 2.5 5.4E-05 29.2 1.2 19 1-19 4-22 (121)
3 PF00056 Ldh_1_N: lactate/mala 60.9 4.7 0.0001 29.0 1.2 19 1-19 5-23 (141)
4 PF07994 NAD_binding_5: Myo-in 45.7 11 0.00025 31.1 1.3 25 1-25 5-29 (295)
5 COG3326 Predicted membrane pro 45.6 18 0.00038 25.9 2.1 17 5-21 49-65 (94)
6 PF06961 DUF1294: Protein of u 43.9 13 0.00029 23.8 1.1 18 4-21 33-50 (55)
7 COG2223 NarK Nitrate/nitrite t 42.6 6.1 0.00013 34.6 -0.8 45 1-47 353-401 (417)
8 TIGR00894 2A0114euk Na(+)-depe 40.8 42 0.00091 27.2 3.8 43 2-44 401-447 (465)
9 cd00650 LDH_MDH_like NAD-depen 39.8 19 0.00042 28.0 1.7 20 1-20 3-22 (263)
10 PTZ00459 mucin-associated surf 36.6 10 0.00022 31.2 -0.3 20 28-47 2-21 (291)
11 PF13460 NAD_binding_10: NADH( 36.1 25 0.00054 24.7 1.6 20 1-20 3-22 (183)
12 PF05368 NmrA: NmrA-like famil 35.4 24 0.00051 26.1 1.5 19 1-19 3-21 (233)
13 PLN00106 malate dehydrogenase 34.6 22 0.00048 29.5 1.3 19 1-19 23-41 (323)
14 PF05751 FixH: FixH; InterPro 34.2 24 0.00052 24.8 1.3 36 28-70 5-40 (146)
15 PRK10489 enterobactin exporter 33.7 63 0.0014 25.6 3.8 39 5-46 360-398 (417)
16 PHA03231 glycoprotein BALF4; P 33.3 28 0.00061 33.1 1.9 41 2-46 683-723 (829)
17 PF06989 BAALC_N: BAALC N-term 33.2 21 0.00047 23.0 0.8 23 54-77 1-23 (53)
18 PLN02725 GDP-4-keto-6-deoxyman 33.0 26 0.00056 26.5 1.4 19 1-19 2-20 (306)
19 TIGR03649 ergot_EASG ergot alk 30.6 30 0.00065 26.3 1.4 19 1-19 4-22 (285)
20 TIGR01179 galE UDP-glucose-4-e 28.0 40 0.00087 25.3 1.7 19 1-19 4-22 (328)
21 PF03219 TLC: TLC ATP/ADP tran 28.0 18 0.00039 31.7 -0.2 49 2-50 185-243 (491)
22 PF01488 Shikimate_DH: Shikima 27.5 30 0.00065 24.4 0.9 19 1-19 17-35 (135)
23 TIGR01181 dTDP_gluc_dehyt dTDP 27.0 52 0.0011 24.7 2.1 20 1-20 4-23 (317)
24 PRK10263 DNA translocase FtsK; 26.6 22 0.00049 35.5 0.1 18 3-20 141-158 (1355)
25 PF04906 Tweety: Tweety; Inte 26.4 25 0.00055 30.0 0.4 44 26-69 359-406 (406)
26 PRK11908 NAD-dependent epimera 26.3 38 0.00083 26.7 1.4 19 1-19 6-24 (347)
27 PF05767 Pox_A14: Poxvirus vir 26.0 52 0.0011 23.6 1.8 58 10-68 25-84 (92)
28 KOG2533 Permease of the major 25.0 97 0.0021 27.2 3.7 41 5-45 182-225 (495)
29 cd00704 MDH Malate dehydrogena 24.3 42 0.00091 27.6 1.3 18 1-18 5-22 (323)
30 TIGR00400 mgtE Mg2+ transporte 23.4 78 0.0017 27.0 2.8 19 1-19 322-340 (449)
31 COG4709 Predicted membrane pro 23.2 41 0.00089 26.9 1.0 44 66-110 31-78 (195)
32 cd01339 LDH-like_MDH L-lactate 23.1 45 0.00098 26.5 1.2 17 1-18 3-19 (300)
33 TIGR01758 MDH_euk_cyt malate d 22.8 48 0.001 27.3 1.3 18 1-18 4-21 (324)
34 COG3495 Uncharacterized protei 22.8 34 0.00073 26.7 0.4 11 102-112 103-113 (166)
35 PRK07326 short chain dehydroge 22.8 55 0.0012 23.7 1.5 19 1-19 11-29 (237)
36 cd01336 MDH_cytoplasmic_cytoso 22.7 48 0.001 27.2 1.3 18 1-18 7-24 (325)
37 PLN02438 inositol-3-phosphate 22.6 53 0.0011 29.7 1.7 42 1-42 66-112 (510)
38 TIGR01772 MDH_euk_gproteo mala 22.6 49 0.0011 27.3 1.3 16 1-16 4-19 (312)
39 cd01338 MDH_choloroplast_like 22.4 49 0.0011 27.2 1.3 18 1-18 7-24 (322)
40 PTZ00325 malate dehydrogenase; 22.1 50 0.0011 27.4 1.4 17 1-17 13-29 (321)
41 cd05293 LDH_1 A subgroup of L- 21.9 56 0.0012 26.7 1.6 18 1-19 8-25 (312)
42 PRK00066 ldh L-lactate dehydro 21.9 49 0.0011 27.0 1.2 18 1-19 11-28 (315)
43 cd05290 LDH_3 A subgroup of L- 21.9 49 0.0011 27.1 1.2 18 1-19 4-21 (307)
44 cd01337 MDH_glyoxysomal_mitoch 21.8 52 0.0011 27.1 1.4 17 1-17 5-21 (310)
45 TIGR02197 heptose_epim ADP-L-g 21.6 52 0.0011 24.9 1.3 20 1-20 3-22 (314)
46 PF04226 Transgly_assoc: Trans 21.5 82 0.0018 19.3 1.9 28 6-36 4-31 (48)
47 TIGR01759 MalateDH-SF1 malate 21.4 53 0.0011 27.2 1.3 19 1-19 8-26 (323)
48 TIGR01777 yfcH conserved hypot 21.3 53 0.0011 24.5 1.2 19 1-19 3-21 (292)
49 PF03825 Nuc_H_symport: Nucleo 20.8 64 0.0014 26.9 1.7 46 3-49 348-396 (400)
50 TIGR01915 npdG NADPH-dependent 20.8 65 0.0014 24.3 1.6 20 1-20 5-24 (219)
51 TIGR00881 2A0104 phosphoglycer 20.6 1.5E+02 0.0033 22.1 3.6 42 3-44 125-168 (379)
52 TIGR00903 2A0129 major facilit 20.4 80 0.0017 25.5 2.1 42 2-44 321-362 (368)
53 PRK09291 short chain dehydroge 20.3 62 0.0014 23.7 1.4 19 1-19 7-25 (257)
No 1
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.67 E-value=4e-17 Score=133.85 Aligned_cols=90 Identities=72% Similarity=1.274 Sum_probs=80.8
Q ss_pred CcccCccHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhhcceeeEeeccCCCCccCCCCCCCCccchhhhccCHHHHhh
Q 033728 1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQK 80 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~~~y~~~~g~~~mGi~ii~~tl~v~~I~Fp~wg~mf~~~~~~~~~ee~Yy~~e~~~~e~~~ 80 (112)
+++++||+|+++.++++-.....++..+|.++|++.++++++.+++|+|+|++||..+. +|..+||||.+||+|+|+++
T Consensus 387 ~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 465 (476)
T PLN00028 387 LTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIHFPQWGGMFFGPS-KDAVEEDYYASEWTEEEKEK 465 (476)
T ss_pred hhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHheeccchhhhhcCCC-cccchhhhhhcccchhhhhc
Confidence 45789999999999998654333445599999999999999999999999999999999 88889999999999999999
Q ss_pred cccccchhhhh
Q 033728 81 GFHQSSLKFAD 91 (112)
Q Consensus 81 g~h~~s~kfa~ 91 (112)
|+|+.++||+|
T Consensus 466 ~~~~~~~~~~~ 476 (476)
T PLN00028 466 GLHQGSLKFAE 476 (476)
T ss_pred ccccccccccC
Confidence 99999999986
No 2
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=70.00 E-value=2.5 Score=29.22 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.5
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
||||.|++|..+..+|-..
T Consensus 4 IvGAtG~vG~~l~~lL~~h 22 (121)
T PF01118_consen 4 IVGATGYVGRELLRLLAEH 22 (121)
T ss_dssp EESTTSHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHhcC
Confidence 6899999999999999984
No 3
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=60.89 E-value=4.7 Score=29.05 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.1
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||+||+|.-+.-.|-..
T Consensus 5 IiGa~G~VG~~~a~~l~~~ 23 (141)
T PF00056_consen 5 IIGAAGNVGSTLALLLAQQ 23 (141)
T ss_dssp EESTTSHHHHHHHHHHHHT
T ss_pred EECCCChHHHHHHHHHHhC
Confidence 6899999999988777665
No 4
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=45.72 E-value=11 Score=31.13 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=19.8
Q ss_pred CcccCccHHHHHHHHHHHhCCCcch
Q 033728 1 MTGGGGNVGAVLTQLIFFKGSKYSK 25 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~~~y~~ 25 (112)
|||+|||++..+.+-|.........
T Consensus 5 lvG~~GnvaTt~v~Gi~a~k~g~~~ 29 (295)
T PF07994_consen 5 LVGAGGNVATTLVAGIEANKRGLAW 29 (295)
T ss_dssp EETTTSHHHHHHHHHHHHHHTTSSC
T ss_pred EEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999877443333
No 5
>COG3326 Predicted membrane protein [Function unknown]
Probab=45.59 E-value=18 Score=25.92 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.6
Q ss_pred CccHHHHHHHHHHHhCC
Q 033728 5 GGNVGAVLTQLIFFKGS 21 (112)
Q Consensus 5 GGNvGaVl~~~lF~~~~ 21 (112)
||-+|+.+++-+||..+
T Consensus 49 GG~~Ga~~a~~~frHKT 65 (94)
T COG3326 49 GGWFGAWLAMQLFRHKT 65 (94)
T ss_pred cchHHHHHHHHHHHhcc
Confidence 78999999999999865
No 6
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=43.94 E-value=13 Score=23.76 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.9
Q ss_pred cCccHHHHHHHHHHHhCC
Q 033728 4 GGGNVGAVLTQLIFFKGS 21 (112)
Q Consensus 4 AGGNvGaVl~~~lF~~~~ 21 (112)
.||-+|+.+.+.+||..+
T Consensus 33 ~GG~~Ga~~~m~~frHKt 50 (55)
T PF06961_consen 33 LGGWPGALLGMYLFRHKT 50 (55)
T ss_pred HHhHHHHHHHHHHhcccc
Confidence 489999999999999865
No 7
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=42.59 E-value=6.1 Score=34.57 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=31.5
Q ss_pred CcccCccHHHHHHHHHHHh----CCCcchhhHHHHHHHHHHHhhcceeeEe
Q 033728 1 MTGGGGNVGAVLTQLIFFK----GSKYSKETGITLMGVMIICCTLPIMLIY 47 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~----~~~y~~~~g~~~mGi~ii~~tl~v~~I~ 47 (112)
||||.|++||...-..|.. ..+|+ .+|++...+.++|.+..-+++
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~--~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYT--GAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999877666654 23344 488888888888766554443
No 8
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=40.76 E-value=42 Score=27.15 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=25.8
Q ss_pred cccCccHHHHHHHHHHHhCCC----cchhhHHHHHHHHHHHhhccee
Q 033728 2 TGGGGNVGAVLTQLIFFKGSK----YSKETGITLMGVMIICCTLPIM 44 (112)
Q Consensus 2 VGAGGNvGaVl~~~lF~~~~~----y~~~~g~~~mGi~ii~~tl~v~ 44 (112)
++..|++|+.+..++.-.-.+ ..+..+|.+++++.++..++..
T Consensus 401 ~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 401 TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 345678888888877643211 2244477777766666655543
No 9
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=39.85 E-value=19 Score=27.97 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.5
Q ss_pred CcccCccHHHHHHHHHHHhC
Q 033728 1 MTGGGGNVGAVLTQLIFFKG 20 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~ 20 (112)
|+||||++|.-+...|...+
T Consensus 3 IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 3 VIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred EECCCChHHHHHHHHHHhCC
Confidence 68999999988888777655
No 10
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=36.62 E-value=10 Score=31.17 Aligned_cols=20 Identities=15% Similarity=0.492 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhcceeeEe
Q 033728 28 GITLMGVMIICCTLPIMLIY 47 (112)
Q Consensus 28 g~~~mGi~ii~~tl~v~~I~ 47 (112)
++++-|=+.|+|+|||+|-=
T Consensus 2 aMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 2 AMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred ccchhchHHHHHHHHHHhcC
Confidence 34566888999999999874
No 11
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=36.08 E-value=25 Score=24.70 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.2
Q ss_pred CcccCccHHHHHHHHHHHhC
Q 033728 1 MTGGGGNVGAVLTQLIFFKG 20 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~ 20 (112)
|+||.|++|.-+...|-..+
T Consensus 3 V~GatG~vG~~l~~~L~~~~ 22 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRG 22 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTT
T ss_pred EECCCChHHHHHHHHHHHCC
Confidence 58999999999999988764
No 12
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=35.44 E-value=24 Score=26.11 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.9
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||.|++|.-+...|-..
T Consensus 3 V~GatG~~G~~v~~~L~~~ 21 (233)
T PF05368_consen 3 VTGATGNQGRSVVRALLSA 21 (233)
T ss_dssp EETTTSHHHHHHHHHHHHT
T ss_pred EECCccHHHHHHHHHHHhC
Confidence 6899999999999998874
No 13
>PLN00106 malate dehydrogenase
Probab=34.63 E-value=22 Score=29.49 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.6
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
||||.||||+.++-+|-..
T Consensus 23 IiGaaG~VG~~~a~~l~~~ 41 (323)
T PLN00106 23 VLGAAGGIGQPLSLLMKMN 41 (323)
T ss_pred EECCCCHHHHHHHHHHHhC
Confidence 6899999999988877643
No 14
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=34.23 E-value=24 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhcceeeEeeccCCCCccCCCCCCCCccchhh
Q 033728 28 GITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYL 70 (112)
Q Consensus 28 g~~~mGi~ii~~tl~v~~I~Fp~wg~mf~~~~~~~~~ee~Yy~ 70 (112)
+..+++++++.+.+++..|++-. .-+ .+...+|||.
T Consensus 5 ~~~ii~~~~~~v~~~~~~v~~A~-----~~~--~~lV~~dYY~ 40 (146)
T PF05751_consen 5 GWFIIAFFAVFVVANVTMVYIAI-----STP--DGLVVDDYYE 40 (146)
T ss_pred hhhhHHhhhhEeeeeeeEEeeec-----cCC--CCceeccHHH
Confidence 34566666666666666665432 222 2456689998
No 15
>PRK10489 enterobactin exporter EntS; Provisional
Probab=33.70 E-value=63 Score=25.63 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhhcceeeE
Q 033728 5 GGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLI 46 (112)
Q Consensus 5 GGNvGaVl~~~lF~~~~~y~~~~g~~~mGi~ii~~tl~v~~I 46 (112)
|+-+|..+.+.++-.. +....+.+.+++++++.+++.+.
T Consensus 360 g~~~g~~l~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 360 GDAIGAALLGGLGAMM---TPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred hHhHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHh
Confidence 4456777777776542 33447888888777766665443
No 16
>PHA03231 glycoprotein BALF4; Provisional
Probab=33.26 E-value=28 Score=33.10 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=26.0
Q ss_pred cccCccHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhhcceeeE
Q 033728 2 TGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLI 46 (112)
Q Consensus 2 VGAGGNvGaVl~~~lF~~~~~y~~~~g~~~mGi~ii~~tl~v~~I 46 (112)
.|++|-+|+++.|++=|... +=|=+.|+++++++-++++++
T Consensus 683 ~~v~ga~~SiVsG~~sFl~N----PFGg~~iillvia~vv~v~l~ 723 (829)
T PHA03231 683 SGVAGAVGSIVSGVISFLKN----PFGGLAIGLLVIAVLVAVFLA 723 (829)
T ss_pred hhHHHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999876543 224445555555554444444
No 17
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=33.18 E-value=21 Score=23.05 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=15.1
Q ss_pred CccCCCCCCCCccchhhhccCHHH
Q 033728 54 MFCGPSKNMTTEEDYYLSEWNSKE 77 (112)
Q Consensus 54 mf~~~~~~~~~ee~Yy~~e~~~~e 77 (112)
|=|+.+..|+.|..||-+ ||.|-
T Consensus 1 mgcggsradaiepry~es-wtret 23 (53)
T PF06989_consen 1 MGCGGSRADAIEPRYYES-WTRET 23 (53)
T ss_pred CCCCccccccccchhhhh-hcccc
Confidence 446666467788888765 66554
No 18
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=32.96 E-value=26 Score=26.51 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.0
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
||||.|.+|.-+...|-..
T Consensus 2 ItGa~GfiG~~l~~~L~~~ 20 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEAL 20 (306)
T ss_pred cccCCCcccHHHHHHHHhC
Confidence 7999999999998888543
No 19
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=30.59 E-value=30 Score=26.32 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.3
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||.|++|.-+...|-..
T Consensus 4 VtGatG~iG~~vv~~L~~~ 22 (285)
T TIGR03649 4 LTGGTGKTASRIARLLQAA 22 (285)
T ss_pred EEcCCChHHHHHHHHHHhC
Confidence 6899999999988887754
No 20
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=28.03 E-value=40 Score=25.32 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.9
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||.|++|.-+...|-+.
T Consensus 4 V~GatG~iG~~l~~~l~~~ 22 (328)
T TIGR01179 4 VTGGAGYIGSHTVRQLLES 22 (328)
T ss_pred EeCCCCHHHHHHHHHHHhC
Confidence 6899999999999988764
No 21
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=28.02 E-value=18 Score=31.74 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=28.2
Q ss_pred cccCccHHHHHHHHHHHhCCC----------cchhhHHHHHHHHHHHhhcceeeEeecc
Q 033728 2 TGGGGNVGAVLTQLIFFKGSK----------YSKETGITLMGVMIICCTLPIMLIYFPQ 50 (112)
Q Consensus 2 VGAGGNvGaVl~~~lF~~~~~----------y~~~~g~~~mGi~ii~~tl~v~~I~Fp~ 50 (112)
.|+|+|+|.++.+.+=..-++ -+++..+.++-.+++++.+++++++--+
T Consensus 185 ~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~ 243 (491)
T PF03219_consen 185 FGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYM 243 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999998877554222 2333345444444444555555554333
No 22
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.51 E-value=30 Score=24.43 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.2
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||||-..+++.++.=..
T Consensus 17 viGaGg~ar~v~~~L~~~g 35 (135)
T PF01488_consen 17 VIGAGGAARAVAAALAALG 35 (135)
T ss_dssp EESSSHHHHHHHHHHHHTT
T ss_pred EECCHHHHHHHHHHHHHcC
Confidence 5899999999999887764
No 23
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=26.95 E-value=52 Score=24.68 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=17.5
Q ss_pred CcccCccHHHHHHHHHHHhC
Q 033728 1 MTGGGGNVGAVLTQLIFFKG 20 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~ 20 (112)
||||.|.+|..+...|...+
T Consensus 4 ItGatG~iG~~l~~~l~~~~ 23 (317)
T TIGR01181 4 VTGGAGFIGSNFVRYILNEH 23 (317)
T ss_pred EEcCCchHHHHHHHHHHHhC
Confidence 68999999999999887654
No 24
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.61 E-value=22 Score=35.47 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.0
Q ss_pred ccCccHHHHHHHHHHHhC
Q 033728 3 GGGGNVGAVLTQLIFFKG 20 (112)
Q Consensus 3 GAGGNvGaVl~~~lF~~~ 20 (112)
++||-+|..+..+|...-
T Consensus 141 ~gGGIIG~lLs~lL~~Lf 158 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLL 158 (1355)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 689999999988887753
No 25
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=26.43 E-value=25 Score=29.99 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHhhccee---eEeeccCCCCccCC-CCCCCCccchh
Q 033728 26 ETGITLMGVMIICCTLPIM---LIYFPQWGGMFCGP-SKNMTTEEDYY 69 (112)
Q Consensus 26 ~~g~~~mGi~ii~~tl~v~---~I~Fp~wg~mf~~~-~~~~~~ee~Yy 69 (112)
-+|++||.++.+..+++.. ++-..-|.-+-..+ +|.|.+|||.+
T Consensus 359 ~eGl~~l~l~sll~al~f~~~v~~~~~~W~~~~~~~~dy~d~de~dpf 406 (406)
T PF04906_consen 359 LEGLLYLLLFSLLAALLFSILVCVVSHAWKYFRRRDRDYEDVDEEDPF 406 (406)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccCCCC
Confidence 4578888777766555332 34445565555555 45667777753
No 26
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=26.26 E-value=38 Score=26.65 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.5
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
||||.|.+|.-+...|-..
T Consensus 6 VtGatGfiGs~l~~~L~~~ 24 (347)
T PRK11908 6 ILGVNGFIGHHLSKRILET 24 (347)
T ss_pred EECCCcHHHHHHHHHHHhC
Confidence 6899999999999888753
No 27
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=26.02 E-value=52 Score=23.57 Aligned_cols=58 Identities=19% Similarity=0.448 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCcchhhHHHHHHHH--HHHhhcceeeEeeccCCCCccCCCCCCCCccch
Q 033728 10 AVLTQLIFFKGSKYSKETGITLMGVM--IICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDY 68 (112)
Q Consensus 10 aVl~~~lF~~~~~y~~~~g~~~mGi~--ii~~tl~v~~I~Fp~wg~mf~~~~~~~~~ee~Y 68 (112)
+.+|+++=|+.+.....+...-+.++ |++.-+++-.+-|.+||- .|.|+......+.|
T Consensus 25 aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s~ygr-~C~~s~~~~~~~R~ 84 (92)
T PF05767_consen 25 ACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFSMYGR-YCRPSSKVIDNGRY 84 (92)
T ss_pred HHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCcCccccc
Confidence 34566666665443333233333333 233334555667888864 56556233444566
No 28
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.05 E-value=97 Score=27.19 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=26.5
Q ss_pred CccHHHHHHHHHHHh---CCCcchhhHHHHHHHHHHHhhcceee
Q 033728 5 GGNVGAVLTQLIFFK---GSKYSKETGITLMGVMIICCTLPIML 45 (112)
Q Consensus 5 GGNvGaVl~~~lF~~---~~~y~~~~g~~~mGi~ii~~tl~v~~ 45 (112)
|+-+|+.+...+++. ...+.++--|.+-|++++++++.+++
T Consensus 182 g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 182 GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 334555555555552 23445555999999999999876654
No 29
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.31 E-value=42 Score=27.64 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.7
Q ss_pred CcccCccHHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIFF 18 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~ 18 (112)
||||.|++|+-+...|..
T Consensus 5 IiGAaG~VG~~~a~~L~~ 22 (323)
T cd00704 5 ITGAAGQIGYNLLFLIAS 22 (323)
T ss_pred EECCCcHHHHHHHHHHHh
Confidence 689999999988876664
No 30
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=23.37 E-value=78 Score=26.96 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=16.5
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|.|-|||+|+...+.+=|.
T Consensus 322 i~~~~Gn~G~qs~~~~~r~ 340 (449)
T TIGR00400 322 LMDTSGNAGSQSSAVVIRG 340 (449)
T ss_pred HhhccCcHHHHHHHHHHHH
Confidence 4688999999999988886
No 31
>COG4709 Predicted membrane protein [Function unknown]
Probab=23.17 E-value=41 Score=26.93 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=30.9
Q ss_pred cchhh---hccCHHHHhhcccccchhhhhhcccccCCCC-CCCCCCCCC
Q 033728 66 EDYYL---SEWNSKEKQKGFHQSSLKFADNSRSERGRSR-VNTTTIPPN 110 (112)
Q Consensus 66 e~Yy~---~e~~~~e~~~g~h~~s~kfa~nsrserg~~~-~~~~~~~~~ 110 (112)
|+++. .--||+|+.+-|-. ..+-|.+-||||+-+. .+.++++||
T Consensus 31 ehF~~a~~~GksE~EI~~~LG~-P~eiA~ei~s~~~~k~~~~~~~~~n~ 78 (195)
T COG4709 31 EHFREAQEAGKSEEEIAKDLGD-PKEIAAEILSERGIKKEEVKPTQKNV 78 (195)
T ss_pred HHHHhhhhcCCCHHHHHHHhCC-HHHHHHHHHHHccchHHhccCcccch
Confidence 44444 23467888776543 6789999999999554 777777776
No 32
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=23.13 E-value=45 Score=26.49 Aligned_cols=17 Identities=53% Similarity=0.894 Sum_probs=13.3
Q ss_pred CcccCccHHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIFF 18 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~ 18 (112)
|+|| |++|+.++..+-.
T Consensus 3 IIGa-G~vG~~ia~~la~ 19 (300)
T cd01339 3 IIGA-GNVGATLAQLLAL 19 (300)
T ss_pred EECC-CHHHHHHHHHHHh
Confidence 5898 9999998776654
No 33
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=22.82 E-value=48 Score=27.33 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=14.6
Q ss_pred CcccCccHHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIFF 18 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~ 18 (112)
||||.|++|+-+...|..
T Consensus 4 IiGaaG~VG~~~a~~l~~ 21 (324)
T TIGR01758 4 VTGAAGQIGYALLPMIAR 21 (324)
T ss_pred EECCCcHHHHHHHHHHHh
Confidence 689999999988776654
No 34
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.81 E-value=34 Score=26.70 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 033728 102 VNTTTIPPNQV 112 (112)
Q Consensus 102 ~~~~~~~~~~~ 112 (112)
..-++|||||+
T Consensus 103 iHvPpPPpNQI 113 (166)
T COG3495 103 IHVPPPPPNQI 113 (166)
T ss_pred eecCCcCCCeE
Confidence 34578899984
No 35
>PRK07326 short chain dehydrogenase; Provisional
Probab=22.77 E-value=55 Score=23.72 Aligned_cols=19 Identities=21% Similarity=0.580 Sum_probs=16.2
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||+|.+|..+...|-..
T Consensus 11 ItGatg~iG~~la~~l~~~ 29 (237)
T PRK07326 11 ITGGSKGIGFAIAEALLAE 29 (237)
T ss_pred EECCCCcHHHHHHHHHHHC
Confidence 6899999999998887654
No 36
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.73 E-value=48 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.0
Q ss_pred CcccCccHHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIFF 18 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~ 18 (112)
||||.|++|+-+.-.|..
T Consensus 7 I~GAaG~VG~~la~~L~~ 24 (325)
T cd01336 7 VTGAAGQIAYSLLPMIAK 24 (325)
T ss_pred EECCCCHHHHHHHHHHHh
Confidence 689999999998876664
No 37
>PLN02438 inositol-3-phosphate synthase
Probab=22.65 E-value=53 Score=29.74 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=24.4
Q ss_pred CcccCccHHHHHHHHHHHh--CCCcchhhHH---HHHHHHHHHhhcc
Q 033728 1 MTGGGGNVGAVLTQLIFFK--GSKYSKETGI---TLMGVMIICCTLP 42 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~--~~~y~~~~g~---~~mGi~ii~~tl~ 42 (112)
+||+|||+|..+.+-+.-- +-.+.+.+|. -|.|.++-+.++-
T Consensus 66 LVG~gGn~~TT~~aG~~A~r~gl~~~tk~g~~~~n~~Gsvtq~st~~ 112 (510)
T PLN02438 66 LVGWGGNNGSTLTAGVIANKEGISWATKDGVQKANYFGSLTQASTIR 112 (510)
T ss_pred EecCCchHHHHHHHHHHHHHcCCCcccccccccCCCcceEEeeeeee
Confidence 5899999999877766643 3222222222 3566665544443
No 38
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=22.57 E-value=49 Score=27.28 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=9.0
Q ss_pred CcccCccHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLI 16 (112)
Q Consensus 1 IVGAGGNvGaVl~~~l 16 (112)
|+||.||||+-++-.|
T Consensus 4 IiGaaG~VG~~~a~~l 19 (312)
T TIGR01772 4 VLGAAGGIGQPLSLLL 19 (312)
T ss_pred EECCCCHHHHHHHHHH
Confidence 4566666666654444
No 39
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.37 E-value=49 Score=27.24 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=13.0
Q ss_pred CcccCccHHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIFF 18 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~ 18 (112)
|+||.|++|+-+...|..
T Consensus 7 IiGa~G~VG~~~a~~l~~ 24 (322)
T cd01338 7 VTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred EECCCcHHHHHHHHHHHh
Confidence 678889999876655543
No 40
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.12 E-value=50 Score=27.35 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=12.9
Q ss_pred CcccCccHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIF 17 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF 17 (112)
||||-|++|+.+...|-
T Consensus 13 IiGaaG~VGs~~a~~l~ 29 (321)
T PTZ00325 13 VLGAAGGIGQPLSLLLK 29 (321)
T ss_pred EECCCCHHHHHHHHHHh
Confidence 57888888888776554
No 41
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.92 E-value=56 Score=26.73 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.2
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+|| |+||+-+...|...
T Consensus 8 IiGa-G~VG~~~a~~l~~~ 25 (312)
T cd05293 8 VVGV-GQVGMACAISILAK 25 (312)
T ss_pred EECC-CHHHHHHHHHHHhc
Confidence 6897 99999877777654
No 42
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=21.91 E-value=49 Score=26.98 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=13.2
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+|| |++|+-+.-.|-..
T Consensus 11 iiGa-G~vG~~~a~~l~~~ 28 (315)
T PRK00066 11 LVGD-GAVGSSYAYALVNQ 28 (315)
T ss_pred EECC-CHHHHHHHHHHHhc
Confidence 5788 88888877766543
No 43
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.86 E-value=49 Score=27.06 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=12.8
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+|| |++|+.++..|-..
T Consensus 4 IIGa-G~VG~~~a~~l~~~ 21 (307)
T cd05290 4 VIGA-GHVGSAVLNYALAL 21 (307)
T ss_pred EECC-CHHHHHHHHHHHhc
Confidence 5788 88888886655543
No 44
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.76 E-value=52 Score=27.14 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=11.6
Q ss_pred CcccCccHHHHHHHHHH
Q 033728 1 MTGGGGNVGAVLTQLIF 17 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF 17 (112)
|+||.||||+-++-.|-
T Consensus 5 IIGaaG~VG~~~a~~l~ 21 (310)
T cd01337 5 VLGAAGGIGQPLSLLLK 21 (310)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 57877888886665543
No 45
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=21.60 E-value=52 Score=24.92 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.0
Q ss_pred CcccCccHHHHHHHHHHHhC
Q 033728 1 MTGGGGNVGAVLTQLIFFKG 20 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~ 20 (112)
||||.|.+|.-+...|-..+
T Consensus 3 ItGatG~iG~~l~~~L~~~g 22 (314)
T TIGR02197 3 VTGGAGFIGSNLVKALNERG 22 (314)
T ss_pred EeCCcchhhHHHHHHHHHcC
Confidence 68999999999998887654
No 46
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=21.49 E-value=82 Score=19.28 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Q 033728 6 GNVGAVLTQLIFFKGSKYSKETGITLMGVMI 36 (112)
Q Consensus 6 GNvGaVl~~~lF~~~~~y~~~~g~~~mGi~i 36 (112)
|=+||.+.++++..-.. ...+.+.+++.
T Consensus 4 GiiGa~vGg~l~~~lg~---~~~~~~~~~i~ 31 (48)
T PF04226_consen 4 GIIGAFVGGWLFGLLGI---NGGGSWGSFIV 31 (48)
T ss_pred ehHHHHHHHHHHHHhcc---cCCchHHHHHH
Confidence 55788888888876332 22445555443
No 47
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=21.39 E-value=53 Score=27.18 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=14.1
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||.|+||+-+.-.|...
T Consensus 8 IIGa~G~VG~~~a~~l~~~ 26 (323)
T TIGR01759 8 VTGAAGQIGYSLLFRIASG 26 (323)
T ss_pred EECCCcHHHHHHHHHHHhC
Confidence 6788888888877666543
No 48
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=21.27 E-value=53 Score=24.46 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.5
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||.|.+|.-+...|-..
T Consensus 3 VtGatG~iG~~l~~~L~~~ 21 (292)
T TIGR01777 3 ITGGTGFIGRALTQRLTKD 21 (292)
T ss_pred EEcccchhhHHHHHHHHHc
Confidence 6899999999999888764
No 49
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=20.85 E-value=64 Score=26.93 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=28.7
Q ss_pred ccCccHHHHHHHHHHHh-CCC--cchhhHHHHHHHHHHHhhcceeeEeec
Q 033728 3 GGGGNVGAVLTQLIFFK-GSK--YSKETGITLMGVMIICCTLPIMLIYFP 49 (112)
Q Consensus 3 GAGGNvGaVl~~~lF~~-~~~--y~~~~g~~~mGi~ii~~tl~v~~I~Fp 49 (112)
|-|+-+|+.+.+.++-. +.+ +. -.+++.++..++++.++++++.|+
T Consensus 348 Glg~~iG~~igG~l~~~~g~~~~~~-~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 348 GLGGAIGSLIGGWLYDAFGARGMFD-WSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56778899999999865 221 22 234555555555566666666564
No 50
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=20.80 E-value=65 Score=24.32 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.5
Q ss_pred CcccCccHHHHHHHHHHHhC
Q 033728 1 MTGGGGNVGAVLTQLIFFKG 20 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~~ 20 (112)
|+|+.||+|..+...|-+.+
T Consensus 5 IIGG~G~mG~ala~~L~~~G 24 (219)
T TIGR01915 5 VLGGTGDQGKGLALRLAKAG 24 (219)
T ss_pred EEcCCCHHHHHHHHHHHhCC
Confidence 56888999999998887764
No 51
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=20.63 E-value=1.5e+02 Score=22.05 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=22.7
Q ss_pred ccCccHHHHHHHH-HHHh-CCCcchhhHHHHHHHHHHHhhccee
Q 033728 3 GGGGNVGAVLTQL-IFFK-GSKYSKETGITLMGVMIICCTLPIM 44 (112)
Q Consensus 3 GAGGNvGaVl~~~-lF~~-~~~y~~~~g~~~mGi~ii~~tl~v~ 44 (112)
.++.++|+++... +... ...+.+...+++++++.+++.+++.
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred hccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 4566777777662 2211 1223444477777776666555443
No 52
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=20.39 E-value=80 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=27.6
Q ss_pred cccCccHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhhccee
Q 033728 2 TGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIM 44 (112)
Q Consensus 2 VGAGGNvGaVl~~~lF~~~~~y~~~~g~~~mGi~ii~~tl~v~ 44 (112)
+.+.||+|+++..++.-.--. +....|..++++.+++.+.+.
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 456789999877776643111 334478888888777776653
No 53
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.26 E-value=62 Score=23.73 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.2
Q ss_pred CcccCccHHHHHHHHHHHh
Q 033728 1 MTGGGGNVGAVLTQLIFFK 19 (112)
Q Consensus 1 IVGAGGNvGaVl~~~lF~~ 19 (112)
|+||+|.+|..+...|-..
T Consensus 7 VtGasg~iG~~ia~~l~~~ 25 (257)
T PRK09291 7 ITGAGSGFGREVALRLARK 25 (257)
T ss_pred EeCCCCHHHHHHHHHHHHC
Confidence 6899999999998887754
Done!