BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033730
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6CX31|EAF7_KLULA Chromatin modification-related protein EAF7 OS=Kluyveromyces
          lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
          1267 / NRRL Y-1140 / WM37) GN=EAF7 PE=3 SV=1
          Length = 402

 Score = 34.7 bits (78), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 18/75 (24%)

Query: 22 SQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR--------------RFDRHFA 67
          S+VE E+RL + + ++ P    GIH+HF +  L+E L +                D+ F+
Sbjct: 15 SKVE-EIRLFKWMMLFKPA---GIHKHFHMVCLLERLNKPDQYPIKLLQSDKGSSDKVFS 70

Query: 68 PDEVLQLLDRFYNLD 82
           ++V + L R+YNL+
Sbjct: 71 GEDVWEQLSRYYNLE 85


>sp|B1XYQ4|Y4239_LEPCP UPF0250 protein Lcho_4239 OS=Leptothrix cholodnii (strain ATCC
          51168 / LMG 8142 / SP-6) GN=Lcho_4239 PE=3 SV=1
          Length = 91

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 15/60 (25%)

Query: 17 LPKEQSQVELELRLLEALEVYP---PVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQ 73
          +P+EQS +E           YP   P+K+ G H    L  ++E +  RFD  FAPD V Q
Sbjct: 4  IPREQSLIE-----------YPSAFPIKVMGAHVPGFLEAIVE-IALRFDPAFAPDSVEQ 51


>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
           OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
          Length = 637

 Score = 29.3 bits (64), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 29  RLLEALEVYPP-VKLRGIHRHF-VLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKP 86
           R   ++EVY   VK+    R F  ++GL+E +R+   +   P+  + L+ RF + DM+K 
Sbjct: 142 RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK 201

Query: 87  DDEEME 92
             E ++
Sbjct: 202 AIEVLD 207


>sp|Q47RV1|IF2_THEFY Translation initiation factor IF-2 OS=Thermobifida fusca (strain
           YX) GN=infB PE=3 SV=1
          Length = 955

 Score = 28.9 bits (63), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 68  PDEVLQLL--DRFYNLDMLKPDDEEMEIL 94
           PDE LQLL  +  Y ++++ P+DE+ E+L
Sbjct: 401 PDETLQLLGEELNYTVEVVSPEDEDRELL 429


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,465,251
Number of Sequences: 539616
Number of extensions: 1653375
Number of successful extensions: 4426
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4419
Number of HSP's gapped (non-prelim): 14
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)