Query 033730
Match_columns 112
No_of_seqs 102 out of 122
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqq_A RSGI RUH-037, DNAJ homo 89.6 2.3 7.8E-05 27.3 7.5 68 14-95 3-70 (72)
2 2cq8_A 10-formyltetrahydrofola 76.4 15 0.00052 25.1 7.5 42 30-74 33-84 (110)
3 2cu7_A KIAA1915 protein; nucle 75.3 3.3 0.00011 25.7 3.6 29 11-39 1-29 (72)
4 2dim_A Cell division cycle 5-l 74.5 3.6 0.00012 25.3 3.6 30 11-40 1-30 (70)
5 1x41_A Transcriptional adaptor 72.5 4.1 0.00014 24.5 3.4 26 14-39 3-28 (60)
6 4i4d_A Peptide synthetase NRPS 61.3 7.2 0.00025 24.6 3.0 44 28-74 22-73 (93)
7 2elk_A SPCC24B10.08C protein; 60.8 11 0.00038 22.5 3.7 26 14-39 4-29 (58)
8 2yum_A ZZZ3 protein, zinc fing 60.8 9.3 0.00032 23.6 3.4 27 13-39 2-28 (75)
9 2d9a_A B-MYB, MYB-related prot 59.7 10 0.00035 22.4 3.4 27 13-39 2-28 (60)
10 1dny_A Non-ribosomal peptide s 55.8 35 0.0012 21.3 5.8 44 27-73 19-70 (91)
11 2ltp_A Nuclear receptor corepr 52.9 4 0.00014 26.7 0.0 65 9-85 6-70 (89)
12 1fex_A TRF2-interacting telome 46.2 34 0.0011 20.8 4.2 35 21-77 4-38 (59)
13 2yus_A SWI/SNF-related matrix- 43.9 33 0.0011 21.9 4.1 54 16-84 15-68 (79)
14 3kf9_B MLCK2, myosin light cha 43.0 19 0.00064 18.8 2.2 16 46-61 5-20 (22)
15 2yqk_A Arginine-glutamic acid 42.7 32 0.0011 20.9 3.7 28 11-38 1-28 (63)
16 2cjj_A Radialis; plant develop 39.4 21 0.00071 23.8 2.6 23 16-38 5-27 (93)
17 2hzd_A Transcriptional enhance 39.3 82 0.0028 20.8 5.7 56 19-77 6-70 (82)
18 1irz_A ARR10-B; helix-turn-hel 37.6 72 0.0025 20.1 4.8 56 13-78 1-56 (64)
19 1x58_A Hypothetical protein 49 34.7 32 0.0011 21.7 2.8 53 15-77 4-57 (62)
20 3tej_A Enterobactin synthase c 32.4 51 0.0017 24.4 4.1 45 27-74 16-68 (329)
21 2y0n_E MALE-specific lethal 1 30.9 19 0.00066 22.6 1.3 10 97-106 45-54 (56)
22 1x9f_A Globin IV, extracellula 28.5 64 0.0022 21.9 3.8 31 44-76 106-139 (151)
23 1d8j_A General transcription f 27.9 64 0.0022 21.4 3.5 28 50-77 12-43 (81)
24 1x9f_B Erythrocruorin, globin 27.3 67 0.0023 21.5 3.7 38 35-76 94-134 (145)
25 1yhu_A Hemoglobin A1 chain; gl 26.8 70 0.0024 21.6 3.7 32 44-76 98-132 (145)
26 2din_A Cell division cycle 5-l 26.6 60 0.0021 19.3 3.0 24 15-38 5-28 (66)
27 3sjm_A Telomeric repeat-bindin 25.9 46 0.0016 20.3 2.4 23 18-40 10-32 (64)
28 2fe3_A Peroxide operon regulat 25.3 74 0.0025 21.6 3.6 23 52-75 25-47 (145)
29 1mzb_A Ferric uptake regulatio 25.2 61 0.0021 21.7 3.1 37 48-85 34-70 (136)
30 1yhu_C Hemoglobin B1A chain; g 25.0 81 0.0028 21.2 3.8 32 44-77 104-138 (148)
31 2liu_A CURA; holo state, trans 23.8 1.2E+02 0.0043 18.1 5.8 43 30-73 29-79 (99)
32 2o03_A Probable zinc uptake re 23.4 56 0.0019 21.7 2.6 53 25-86 11-63 (131)
33 2cqr_A RSGI RUH-043, DNAJ homo 22.4 1.5E+02 0.0052 18.6 4.4 23 16-38 15-37 (73)
34 1yhu_D Hemoglobin B2 chain; gl 22.2 1E+02 0.0034 20.7 3.8 32 44-77 103-137 (149)
35 1x9f_D Globin C, hemoglobin ch 21.7 67 0.0023 21.3 2.8 32 44-76 98-132 (140)
36 1lhs_A Myoglobin; oxygen stora 21.5 1.2E+02 0.004 20.5 4.1 32 44-75 98-134 (153)
37 2xig_A Ferric uptake regulatio 21.5 85 0.0029 21.5 3.3 23 52-75 30-52 (150)
38 1out_A Hemoglobin I; heme, oxy 21.5 1.2E+02 0.0042 20.3 4.1 29 47-75 98-130 (143)
39 1spg_A Hemoglobin; carbon mono 21.3 1.2E+02 0.0042 20.3 4.1 32 44-75 95-131 (144)
40 4ets_A Ferric uptake regulatio 21.1 77 0.0026 22.2 3.1 23 53-76 37-59 (162)
41 1gvd_A MYB proto-oncogene prot 21.0 65 0.0022 18.2 2.3 22 18-39 2-23 (52)
42 2csf_A DNA-binding protein SAT 21.0 60 0.0021 22.5 2.4 33 54-86 52-84 (101)
43 3mkb_A Hemoglobin subunit alph 21.0 1.2E+02 0.004 20.6 4.0 31 44-75 92-127 (140)
44 1guu_A C-MYB, MYB proto-oncoge 20.5 68 0.0023 18.1 2.2 22 18-39 2-23 (52)
45 1ity_A TRF1; helix-turn-helix, 20.2 88 0.003 18.8 2.9 24 16-39 7-30 (69)
46 2ys8_A RAB-related GTP-binding 20.1 1.2E+02 0.0041 19.1 3.6 23 11-34 1-23 (90)
No 1
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=89.62 E-value=2.3 Score=27.27 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=42.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCCCCCcccccc
Q 033730 14 ASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEI 93 (112)
Q Consensus 14 ~ss~~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Lde~~E~~~~ 93 (112)
.|+..+..||.|+...|-+|+..|. . |.-..+..| +++| || |.++|.++-..+-+...+ + .-.+|+
T Consensus 3 ~~~~~~~~WT~eE~k~fe~al~~~p-~---~t~~RW~~I--A~~l----gR--t~~eV~~~y~~L~~d~~~-~-~G~vp~ 68 (72)
T 2cqq_A 3 SGSSGAPEWTEEDLSQLTRSMVKFP-G---GTPGRWEKI--AHEL----GR--SVTDVTTKAKQLKDSVTC-S-PGMVSG 68 (72)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSC-T---TCTTHHHHH--HHHH----TS--CHHHHHHHHHHHHHSCCC-C-SCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-C---CCCcHHHHH--HHHh----CC--CHHHHHHHHHHHHHhcCc-c-CCCCCC
Confidence 3455566899999999999998885 4 544444433 3334 44 888888887776444222 2 344566
Q ss_pred CC
Q 033730 94 LN 95 (112)
Q Consensus 94 ~~ 95 (112)
|+
T Consensus 69 P~ 70 (72)
T 2cqq_A 69 PS 70 (72)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 2
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.44 E-value=15 Score=25.12 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHhh-CCCCCCCCchhHHHHHH--------HHHHHHhhcC-CCCChHHHHHH
Q 033730 30 LLEALEV-YPPVKLRGIHRHFVLYG--------LMEFLRRRFD-RHFAPDEVLQL 74 (112)
Q Consensus 30 Lf~a~~~-~kPv~~~GihKHF~M~~--------I~e~l~~~~~-r~~~~~~IW~k 74 (112)
+.+.+.+ ..+| |++-.|--++ +..+|++.++ ..++..+|.++
T Consensus 33 iW~~vL~~~~~i---~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~ 84 (110)
T 2cq8_A 33 VWQRILPKVLEV---EDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMA 84 (110)
T ss_dssp HHHHHCSSCSCC---CTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHC
T ss_pred HHHHHhCCCCCC---CCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhC
Confidence 5566777 7889 9999998554 7888898888 88887776643
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.27 E-value=3.3 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.037 Sum_probs=24.5
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhhCCC
Q 033730 11 PSSASSLPKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 11 ~~s~ss~~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
+|+.+...+..||.|.+..|++++..|-+
T Consensus 1 gs~~p~~~~~~WT~eEd~~l~~~~~~~G~ 29 (72)
T 2cu7_A 1 GSSGSSGYSVKWTIEEKELFEQGLAKFGR 29 (72)
T ss_dssp CCCCCSSCCCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHCc
Confidence 36677888899999999999999998754
No 4
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.53 E-value=3.6 Score=25.32 Aligned_cols=30 Identities=23% Similarity=-0.045 Sum_probs=25.8
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhhCCCC
Q 033730 11 PSSASSLPKEQSQVELELRLLEALEVYPPV 40 (112)
Q Consensus 11 ~~s~ss~~k~~~~~e~E~~Lf~a~~~~kPv 40 (112)
+||++.+.+..||.|....|++++..|-+.
T Consensus 1 gss~~~~k~~~Wt~eED~~L~~~v~~~G~~ 30 (70)
T 2dim_A 1 GSSGSSGKGGVWRNTEDEILKAAVMKYGKN 30 (70)
T ss_dssp CCSCSCSTTCCCCHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCcC
Confidence 478888888999999999999999988653
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=72.48 E-value=4.1 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=22.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhhCCC
Q 033730 14 ASSLPKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 14 ~ss~~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
++++.+..||.|.+..|++++..|-+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~ 28 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF 28 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc
Confidence 45778889999999999999988754
No 6
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=61.25 E-value=7.2 Score=24.57 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCCCCCCchhHHHHH--------HHHHHHHhhcCCCCChHHHHHH
Q 033730 28 LRLLEALEVYPPVKLRGIHRHFVLY--------GLMEFLRRRFDRHFAPDEVLQL 74 (112)
Q Consensus 28 ~~Lf~a~~~~kPv~~~GihKHF~M~--------~I~e~l~~~~~r~~~~~~IW~k 74 (112)
..++..+.+...+ |.+..|.-+ -+..++++.+|..++..+|+++
T Consensus 22 ~~i~~~vL~~~~i---~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~ 73 (93)
T 4i4d_A 22 AAIWAETLGRDSV---GPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLET 73 (93)
T ss_dssp HHHHHHHHTCSCC---CTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHhCCCCC---CCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcC
Confidence 3456667788888 999888533 3788999999999999999875
No 7
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=60.85 E-value=11 Score=22.48 Aligned_cols=26 Identities=31% Similarity=0.165 Sum_probs=21.0
Q ss_pred CCCCCcccccHHHHHHHHHHHhhCCC
Q 033730 14 ASSLPKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 14 ~ss~~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
.-++.+..||.|.+..|++++..|-+
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~ 29 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGL 29 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc
Confidence 33455678999999999999998854
No 8
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.76 E-value=9.3 Score=23.64 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHhhCCC
Q 033730 13 SASSLPKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 13 s~ss~~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
|.++..+..||.|....|++++..|-+
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~ 28 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPP 28 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 345777889999999999999999875
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=59.67 E-value=10 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=22.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHhhCCC
Q 033730 13 SASSLPKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 13 s~ss~~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
|++++.+..||.|.+..|++++..|-+
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~ 28 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQ 28 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 455778889999999999999998865
No 10
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=55.83 E-value=35 Score=21.34 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCCCCCCchhHHH--------HHHHHHHHHhhcCCCCChHHHHH
Q 033730 27 ELRLLEALEVYPPVKLRGIHRHFV--------LYGLMEFLRRRFDRHFAPDEVLQ 73 (112)
Q Consensus 27 E~~Lf~a~~~~kPv~~~GihKHF~--------M~~I~e~l~~~~~r~~~~~~IW~ 73 (112)
=.+++..+.+...+ |++..|. .+-+..++++.+|..++..+|++
T Consensus 19 l~~i~~~vL~~~~i---~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~ 70 (91)
T 1dny_A 19 LAEIWERVLGVSGI---GILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFA 70 (91)
T ss_dssp HHHHHHHHHTCSSC---CSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_pred HHHHHHHHhCCCCC---CCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHc
Confidence 34566777788888 8888874 34577889999999999988875
No 11
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=52.85 E-value=4 Score=26.67 Aligned_cols=65 Identities=12% Similarity=-0.021 Sum_probs=41.3
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCCC
Q 033730 9 APPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLK 85 (112)
Q Consensus 9 ~~~~s~ss~~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Ld 85 (112)
++++..+++.+..||.|.+..|++++..| |- .+.. |+.+|-.+.+. .+..-|..+-.-++|+.+-
T Consensus 6 ~~~~~~p~~~~~~WT~eEd~~l~~~~~~~------G~--~W~~--IA~~l~gRt~~--q~k~r~~~~lrk~~l~~~~ 70 (89)
T 2ltp_A 6 HHSSGRENLYFQGWTEEEMGTAKKGLLEH------GR--NWSA--IARMVGSKTVS--QCKNFYFNYKKRQNLDEIL 70 (89)
Confidence 34444556667789999999999998776 43 2444 44556544443 3345577666666776554
No 12
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=46.20 E-value=34 Score=20.78 Aligned_cols=35 Identities=3% Similarity=0.063 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 033730 21 QSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDR 77 (112)
Q Consensus 21 ~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t 77 (112)
.-|.|+...|+..|..+.+. +..++-..||+.|..
T Consensus 4 ~FT~edD~~L~~~v~~~~~~----------------------~~~~~Gn~iwk~la~ 38 (59)
T 1fex_A 4 AFTDADDVAILTYVKENARS----------------------PSSVTGNALWKAMEK 38 (59)
T ss_dssp CCCHHHHHHHHHHHHHTCCS----------------------TTTTTSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccc----------------------cCCCccHHHHHHHHH
Confidence 45889999999999999876 344556667777765
No 13
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=43.89 E-value=33 Score=21.90 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=34.9
Q ss_pred CCCcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCC
Q 033730 16 SLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDML 84 (112)
Q Consensus 16 s~~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~L 84 (112)
+..+..||.|.+..|++++..|- +.+. .|+++|. .=+..++-.+-..+|--+..
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G--------~~W~--~IA~~v~-----~RT~~qcr~r~~~~~i~d~~ 68 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK--------DDWN--KVSEHVG-----SRTQDECILHFLRLPIEDPY 68 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS--------SCHH--HHHHHHS-----SCCHHHHHHHHTTSCCCCSS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC--------CCHH--HHHHHcC-----CCCHHHHHHHHHHhcccccc
Confidence 34567899999999999999874 2233 3445553 24566777776666544433
No 14
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=43.03 E-value=19 Score=18.80 Aligned_cols=16 Identities=6% Similarity=0.283 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhh
Q 033730 46 HRHFVLYGLMEFLRRR 61 (112)
Q Consensus 46 hKHF~M~~I~e~l~~~ 61 (112)
-|||..++-..+|++.
T Consensus 5 kK~f~av~Aanrl~k~ 20 (22)
T 3kf9_B 5 KKNFIAVSAANRFKKI 20 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3899999999999864
No 15
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.66 E-value=32 Score=20.90 Aligned_cols=28 Identities=25% Similarity=0.129 Sum_probs=20.3
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHhhCC
Q 033730 11 PSSASSLPKEQSQVELELRLLEALEVYP 38 (112)
Q Consensus 11 ~~s~ss~~k~~~~~e~E~~Lf~a~~~~k 38 (112)
+||.+.+....||.|.-..+.+|+..|-
T Consensus 1 ~~~~p~~~~~~WT~eE~~~Fe~~l~~yG 28 (63)
T 2yqk_A 1 GSSGSSGIEKCWTEDEVKRFVKGLRQYG 28 (63)
T ss_dssp CCCCCCCCCCSCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCCcCHHHHHHHHHHHHHhC
Confidence 3666677777888887777777777764
No 16
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=39.42 E-value=21 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=18.1
Q ss_pred CCCcccccHHHHHHHHHHHhhCC
Q 033730 16 SLPKEQSQVELELRLLEALEVYP 38 (112)
Q Consensus 16 s~~k~~~~~e~E~~Lf~a~~~~k 38 (112)
...+..||.|.+..|.+|+..|.
T Consensus 5 ~~~~~~WT~eEd~~L~~al~~~~ 27 (93)
T 2cjj_A 5 RGSGRPWSAKENKAFERALAVYD 27 (93)
T ss_dssp ---CCSCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Confidence 44467899999999999999985
No 17
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=39.31 E-value=82 Score=20.85 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=42.0
Q ss_pred cccccHHHHHHHHHHHhhCCCCCCCCchhH-H--------HHHHHHHHHHhhcCCCCChHHHHHHHHh
Q 033730 19 KEQSQVELELRLLEALEVYPPVKLRGIHRH-F--------VLYGLMEFLRRRFDRHFAPDEVLQLLDR 77 (112)
Q Consensus 19 k~~~~~e~E~~Lf~a~~~~kPv~~~GihKH-F--------~M~~I~e~l~~~~~r~~~~~~IW~kL~t 77 (112)
...|.++.|.++..|+..|.|- |-.|- . +=-.|++++...+|+.=+-+.|=.||.-
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~---g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPC---GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSS---SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCC---CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 4578999999999999999999 76653 1 1235889988888877776666555543
No 18
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=37.62 E-value=72 Score=20.05 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=37.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhh
Q 033730 13 SASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRF 78 (112)
Q Consensus 13 s~ss~~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~ 78 (112)
||+.-+...||+|+-.+++.|+...- ..+ =.=-.|.+.|+ -...+...|=.||..|
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG------~~~-AtPk~Il~~M~---v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG------VER-AVPKKILDLMN---VDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC------TTT-CCHHHHHHHHC---CTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC------CCC-CCcHHHHHHcC---CCCCCHHHHHHHHHHH
Confidence 45667778999999999999997643 111 00014666665 2457888887777653
No 19
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=34.74 E-value=32 Score=21.69 Aligned_cols=53 Identities=13% Similarity=-0.021 Sum_probs=34.5
Q ss_pred CCCCcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCC-CCChHHHHHHHHh
Q 033730 15 SSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDR-HFAPDEVLQLLDR 77 (112)
Q Consensus 15 ss~~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r-~~~~~~IW~kL~t 77 (112)
.+-++..||.|.+-.|++++.+| |- |..-|.-.-.+ .-+| .|.+++-|..|..
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~------G~--~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTM------GN--HWNSILWSFPF--QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHH------CS--CHHHHHHHSCC--CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------hH--hHHHHHHhCCC--ccCcccchHHHHHHHHHh
Confidence 35577899999999999999887 53 34433321111 1233 5778888887754
No 20
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=32.45 E-value=51 Score=24.44 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCCCCCCchhHHHHHH--------HHHHHHhhcCCCCChHHHHHH
Q 033730 27 ELRLLEALEVYPPVKLRGIHRHFVLYG--------LMEFLRRRFDRHFAPDEVLQL 74 (112)
Q Consensus 27 E~~Lf~a~~~~kPv~~~GihKHF~M~~--------I~e~l~~~~~r~~~~~~IW~k 74 (112)
=..++..+.+..++ |++..|.-++ +..+|++.+|..+++.+|+++
T Consensus 16 l~~~~~~~l~~~~i---~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~ 68 (329)
T 3tej_A 16 IAAAFSSLLGCDVQ---DADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVA 68 (329)
T ss_dssp HHHHHHHHHTC-CC---STTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHC
T ss_pred HHHHHHHHhCCCCC---CCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 35677888899899 9998885443 788899999999999888853
No 21
>2y0n_E MALE-specific lethal 1 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Mus musculus}
Probab=30.85 E-value=19 Score=22.56 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=7.6
Q ss_pred CCCccCChhh
Q 033730 97 EEDFCLPQSY 106 (112)
Q Consensus 97 e~dF~LP~~e 106 (112)
..+|+|||..
T Consensus 45 ~s~FsLPW~~ 54 (56)
T 2y0n_E 45 PQNFELPWLD 54 (56)
T ss_dssp CCCCCCTTC-
T ss_pred cccccCcccc
Confidence 5699999953
No 22
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=28.49 E-value=64 Score=21.93 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.1
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChHHHHHHHH
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPDEVLQLLD 76 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~~IW~kL~ 76 (112)
||- .||..+ ||...|...+| .++.+ -|+++=
T Consensus 106 gV~p~~f~~~~~~ll~~l~~~lg-~~t~e-AW~k~~ 139 (151)
T 1x9f_A 106 GVTKEYFRGIGEAFARVLPQVLS-CFNVD-AWNRCF 139 (151)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCS-SCCHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC-CCCHH-HHHHHH
Confidence 443 589988 69999999999 99976 998863
No 23
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=27.94 E-value=64 Score=21.37 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhh----cCCCCChHHHHHHHHh
Q 033730 50 VLYGLMEFLRRR----FDRHFAPDEVLQLLDR 77 (112)
Q Consensus 50 ~M~~I~e~l~~~----~~r~~~~~~IW~kL~t 77 (112)
.|.-|+++|+++ -+...|.++|.++++.
T Consensus 12 ~lakiV~~mK~rh~~g~~~PltL~EILde~~~ 43 (81)
T 1d8j_A 12 VLAKIVNYMKTRHQRGDTHPLTLDEILDETQH 43 (81)
T ss_dssp HHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhccCCCCCccHHHHHHHHhc
Confidence 355699999974 4677999999999873
No 24
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=27.34 E-value=67 Score=21.50 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=28.8
Q ss_pred hhCCCCCCCCch-hHHHHH--HHHHHHHhhcCCCCChHHHHHHHH
Q 033730 35 EVYPPVKLRGIH-RHFVLY--GLMEFLRRRFDRHFAPDEVLQLLD 76 (112)
Q Consensus 35 ~~~kPv~~~Gih-KHF~M~--~I~e~l~~~~~r~~~~~~IW~kL~ 76 (112)
.+|+.. ||- .||..+ ||...|...+|..++. .-|+++=
T Consensus 94 ~~H~~~---gV~p~~f~~~~~~Ll~~l~~~lg~~~t~-~AW~~~~ 134 (145)
T 1x9f_B 94 VQHEGR---KIPDNYFDAFKTAILHVVAAQLGRCYDR-EAWDACI 134 (145)
T ss_dssp HHHTTS---CCCHHHHHHHHHHHHHHHHHHHTTSCCH-HHHHHHH
T ss_pred HHHhhc---CCCHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHH
Confidence 445544 554 488887 7999999999988888 8998864
No 25
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=26.79 E-value=70 Score=21.56 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=26.2
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChHHHHHHHH
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPDEVLQLLD 76 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~~IW~kL~ 76 (112)
||- .||..+ ||...|...+|..++. .-|+++=
T Consensus 98 gV~p~~f~~~~~~ll~~l~~~lg~~~t~-~AW~~~~ 132 (145)
T 1yhu_A 98 TIDPVNFVVFRKALIATVAGTFGVCFDV-PAWQGCY 132 (145)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHCTTCCH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCH-HHHHHHH
Confidence 554 489988 6999999999998987 8998863
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.62 E-value=60 Score=19.34 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.8
Q ss_pred CCCCcccccHHHHHHHHHHHhhCC
Q 033730 15 SSLPKEQSQVELELRLLEALEVYP 38 (112)
Q Consensus 15 ss~~k~~~~~e~E~~Lf~a~~~~k 38 (112)
++..+..||.|.+..|++++..+-
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g 28 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMP 28 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC
Confidence 466778899999999999987654
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=25.92 E-value=46 Score=20.28 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.4
Q ss_pred CcccccHHHHHHHHHHHhhCCCC
Q 033730 18 PKEQSQVELELRLLEALEVYPPV 40 (112)
Q Consensus 18 ~k~~~~~e~E~~Lf~a~~~~kPv 40 (112)
-|..||.|.+..|.++|..|-+-
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~ 32 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG 32 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHccCCC
Confidence 45689999999999999998653
No 28
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.26 E-value=74 Score=21.55 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=10.8
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHH
Q 033730 52 YGLMEFLRRRFDRHFAPDEVLQLL 75 (112)
Q Consensus 52 ~~I~e~l~~~~~r~~~~~~IW~kL 75 (112)
.+|.+.|.+. +.++++++|++.|
T Consensus 25 ~~Il~~L~~~-~~~~sa~ei~~~l 47 (145)
T 2fe3_A 25 HAILEYLVNS-MAHPTADDIYKAL 47 (145)
T ss_dssp HHHHHHHHHC-SSCCCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Confidence 3444444432 3455555555554
No 29
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.22 E-value=61 Score=21.70 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCCC
Q 033730 48 HFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLK 85 (112)
Q Consensus 48 HF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Ld 85 (112)
|+..--|.+.|++. +..++..-|.+.|..|-+...+.
T Consensus 34 ~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 34 HMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp SBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 45555666666554 34566666666666666555554
No 30
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=25.02 E-value=81 Score=21.19 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=25.1
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChHHHHHHHHh
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPDEVLQLLDR 77 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~~IW~kL~t 77 (112)
||- .||..+ ||...|...+| .++.+ -|+++=.
T Consensus 104 ~V~p~~f~~~~~~Ll~~l~~~lg-~~t~e-AW~~~~~ 138 (148)
T 1yhu_C 104 GVTGAGFQLMATVLMESLPQVVE-GFNPD-AWASCLA 138 (148)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHSS-SCCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC-CCCHH-HHHHHHH
Confidence 443 388888 79999999999 89875 9988643
No 31
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=23.83 E-value=1.2e+02 Score=18.10 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=26.8
Q ss_pred HHHHHhhCCCCCCCCchhHHHH--------HHHHHHHHhhcCCCCChHHHHH
Q 033730 30 LLEALEVYPPVKLRGIHRHFVL--------YGLMEFLRRRFDRHFAPDEVLQ 73 (112)
Q Consensus 30 Lf~a~~~~kPv~~~GihKHF~M--------~~I~e~l~~~~~r~~~~~~IW~ 73 (112)
.+..+.+..+ .-.+.+..|.= +-|...+++.+|..++...+|+
T Consensus 29 ~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~ 79 (99)
T 2liu_A 29 QLAEALYTEE-SEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYD 79 (99)
T ss_dssp HHHHHTTSCG-GGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHCcCH-HHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHh
Confidence 3444455422 11256666643 3477888888999998888874
No 32
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.36 E-value=56 Score=21.74 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCCCC
Q 033730 25 ELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKP 86 (112)
Q Consensus 25 e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Lde 86 (112)
.+-.++|+.+... ++|+..--|.+.|++. +..++..-|.+.|..|-+...+..
T Consensus 11 ~qR~~Il~~l~~~--------~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 11 RQRAAISTLLETL--------DDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHC--------CSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCEEE
Confidence 3445556666432 2356677788888765 567888888888888877777764
No 33
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.38 E-value=1.5e+02 Score=18.57 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.4
Q ss_pred CCCcccccHHHHHHHHHHHhhCC
Q 033730 16 SLPKEQSQVELELRLLEALEVYP 38 (112)
Q Consensus 16 s~~k~~~~~e~E~~Lf~a~~~~k 38 (112)
...+..||.|....|.+|+..|.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g 37 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYP 37 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHcC
Confidence 34567899999999999999986
No 34
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=22.20 E-value=1e+02 Score=20.75 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=25.1
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChHHHHHHHHh
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPDEVLQLLDR 77 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~~IW~kL~t 77 (112)
||- .||..+ ||...|...+| .++. +-|+++=.
T Consensus 103 gV~p~~f~~~~~~Ll~~l~~~lg-~~t~-~AW~~~~~ 137 (149)
T 1yhu_D 103 GVTKGGFSAIAQSFLRVMPQVAS-CFNP-DAWSRCFN 137 (149)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHSS-SCCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC-CCCH-HHHHHHHH
Confidence 444 388888 79999999999 8887 69988643
No 35
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=21.66 E-value=67 Score=21.30 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.2
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChHHHHHHHH
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPDEVLQLLD 76 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~~IW~kL~ 76 (112)
||- .||..+ ||...|...+|..++. .-|+++=
T Consensus 98 gV~p~~f~~~~~~Ll~~l~~~lg~~~t~-~AW~~~~ 132 (140)
T 1x9f_D 98 NLKPEFFDIFLKHLLHVLGDRLGTHFDF-GAWHDCV 132 (140)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHGGGCCH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHH
Confidence 443 488887 6899998888888888 9998863
No 36
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=21.55 E-value=1.2e+02 Score=20.54 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=25.6
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChH--HHHHHH
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPD--EVLQLL 75 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~--~IW~kL 75 (112)
||- .||.++ ||...|...+|..++.+ .-|+++
T Consensus 98 ~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~ 134 (153)
T 1lhs_A 98 KIPVKYLEFICEIIVKVIAEKHPSDFGADSQAAMKKA 134 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHH
Confidence 554 489988 79999999999988865 678875
No 37
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.52 E-value=85 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=10.9
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHH
Q 033730 52 YGLMEFLRRRFDRHFAPDEVLQLL 75 (112)
Q Consensus 52 ~~I~e~l~~~~~r~~~~~~IW~kL 75 (112)
.+|.+.|.+. +.++++++|++.|
T Consensus 30 ~~IL~~l~~~-~~~~sa~ei~~~l 52 (150)
T 2xig_A 30 EEVVSVLYRS-GTHLSPEEITHSI 52 (150)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Confidence 3444444433 3355555555555
No 38
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=21.48 E-value=1.2e+02 Score=20.32 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=24.1
Q ss_pred hHHHHH--HHHHHHHhhcCCCCChH--HHHHHH
Q 033730 47 RHFVLY--GLMEFLRRRFDRHFAPD--EVLQLL 75 (112)
Q Consensus 47 KHF~M~--~I~e~l~~~~~r~~~~~--~IW~kL 75 (112)
.||..+ ||..-|...+|..++.+ .-|+++
T Consensus 98 ~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~ 130 (143)
T 1out_A 98 GNFKILSHNILVTLAIHFPSDFTPEVHIAVDKF 130 (143)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccCCHHHHHHHHHH
Confidence 489888 79999999999989875 678875
No 39
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=21.29 E-value=1.2e+02 Score=20.32 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=25.7
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCChH--HHHHHH
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAPD--EVLQLL 75 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~~--~IW~kL 75 (112)
||- .||..+ ||..-|...+|..++.+ .-|+++
T Consensus 95 ~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~ 131 (144)
T 1spg_A 95 RVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKF 131 (144)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHH
Confidence 543 489988 79999999999989875 678875
No 40
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.08 E-value=77 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=11.2
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHH
Q 033730 53 GLMEFLRRRFDRHFAPDEVLQLLD 76 (112)
Q Consensus 53 ~I~e~l~~~~~r~~~~~~IW~kL~ 76 (112)
+|.+.|.+. ++++|+++|++.|.
T Consensus 37 ~IL~~L~~~-~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 37 VLLKTLYHS-DTHYTPESLYMEIK 59 (162)
T ss_dssp HHHHHHHSC-CSCBCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHH
Confidence 344444332 35555555555554
No 41
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=21.02 E-value=65 Score=18.19 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.1
Q ss_pred CcccccHHHHHHHHHHHhhCCC
Q 033730 18 PKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 18 ~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
.+..||.|.+..|++++..|-+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGP 23 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc
Confidence 4667899999999999988754
No 42
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.99 E-value=60 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHhhcCccCCCC
Q 033730 54 LMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKP 86 (112)
Q Consensus 54 I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Lde 86 (112)
+++-|+..-+..--...+|.+|.+|||-=-|-+
T Consensus 52 LSelLR~~enPkP~~~~lW~~Lk~m~nWL~Lpe 84 (101)
T 2csf_A 52 LCELLRWKENPSPENRTLWENLCTIRRFLNLPQ 84 (101)
T ss_dssp HHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHhcccCCCcchhhHHHHHHHHHHHHcCCH
Confidence 445454333444456789999999998766654
No 43
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=20.98 E-value=1.2e+02 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=24.9
Q ss_pred Cch-hHHHHH--HHHHHHHhhcCCCCCh--HHHHHHH
Q 033730 44 GIH-RHFVLY--GLMEFLRRRFDRHFAP--DEVLQLL 75 (112)
Q Consensus 44 Gih-KHF~M~--~I~e~l~~~~~r~~~~--~~IW~kL 75 (112)
||- -||.++ ||..-|...+| .++. ..-|+++
T Consensus 92 ~V~p~~f~~l~~~Ll~~l~~~lg-~ft~ev~~AW~k~ 127 (140)
T 3mkb_A 92 LVDPSNFPMLSECILVTLATHLA-EFSPATHCAVDKL 127 (140)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC-cCCHHHHHHHHHH
Confidence 444 499998 79999999999 9986 4778875
No 44
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=20.47 E-value=68 Score=18.07 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=18.0
Q ss_pred CcccccHHHHHHHHHHHhhCCC
Q 033730 18 PKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 18 ~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
.+..||.|.+..|++++..|-+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGT 23 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCC
Confidence 3567899999999999988755
No 45
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=20.24 E-value=88 Score=18.78 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.7
Q ss_pred CCCcccccHHHHHHHHHHHhhCCC
Q 033730 16 SLPKEQSQVELELRLLEALEVYPP 39 (112)
Q Consensus 16 s~~k~~~~~e~E~~Lf~a~~~~kP 39 (112)
...+..||.|.+..|++++..|-+
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~ 30 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGE 30 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
Confidence 445678999999999999998743
No 46
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.14 E-value=1.2e+02 Score=19.06 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=12.3
Q ss_pred CCCCCCCCcccccHHHHHHHHHHH
Q 033730 11 PSSASSLPKEQSQVELELRLLEAL 34 (112)
Q Consensus 11 ~~s~ss~~k~~~~~e~E~~Lf~a~ 34 (112)
+||+||-....++.++- ..++.|
T Consensus 1 gs~g~s~~~~~~s~~~~-~~~~~~ 23 (90)
T 2ys8_A 1 GSSGSSGSSASFTKEQA-DAIRRI 23 (90)
T ss_dssp CCCCCCCCCCCCCHHHH-HHHHHH
T ss_pred CCCCCCccccCCCHHHH-HHHHHH
Confidence 46676666665555443 334444
Done!