Query 033732
Match_columns 112
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 09:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1htr.1 b.50.1.2 (P:,B:) Pepsi 32.6 6.3 0.00046 27.3 0.8 17 36-52 1-17 (372)
2 d3psga_ b.50.1.2 (A:) Pepsin(o 19.1 16 0.0011 25.4 0.8 17 37-53 1-17 (370)
3 d2dt6a1 a.217.1.1 (A:48-110) S 14.6 30 0.0022 19.8 1.2 20 9-28 20-39 (63)
4 d1jb0a_ f.29.1.1 (A:) Apoprote 11.4 32 0.0023 29.2 0.8 21 54-74 390-410 (743)
5 d1ipaa2 d.79.3.3 (A:1-105) Rrm 10.8 42 0.0031 19.3 1.0 13 38-50 1-13 (105)
6 d1jb0b_ f.29.1.1 (B:) Apoprote 10.5 35 0.0026 28.9 0.8 21 54-74 383-403 (739)
7 d1dmta_ d.92.1.4 (A:) Neutral 10.2 26 0.0019 25.4 -0.2 36 49-84 628-681 (696)
8 d2h1ca1 c.120.1.1 (A:1-138) Tr 8.8 61 0.0044 18.7 1.2 21 48-71 102-122 (138)
9 d1kqfb2 f.23.22.1 (B:246-290) 8.4 83 0.006 17.7 1.7 12 52-63 19-30 (45)
10 d1gg4a1 c.59.1.1 (A:313-447) U 8.4 48 0.0035 20.4 0.6 12 63-74 12-23 (135)
No 1
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens), progastricsin (pepsinogen C) [TaxId: 9606]}
Probab=32.58 E-value=6.3 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=14.6
Q ss_pred ceeeeccCCCchhhHHH
Q 033732 36 PLIRIGLRKNPVVRDRL 52 (112)
Q Consensus 36 pLIRIglrk~PvLRdrL 52 (112)
.+|||+|+|.+.+|.+|
T Consensus 1 ~~~~ipl~k~~~~r~~~ 17 (372)
T g1htr.1 1 AVVKVPLKKFKSIRETM 17 (372)
T ss_dssp CCEEEEEEECCCHHHHH
T ss_pred CEEEEeeeechhHHHHH
Confidence 37999999999999876
No 2
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=19.13 E-value=16 Score=25.38 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=13.7
Q ss_pred eeeeccCCCchhhHHHH
Q 033732 37 LIRIGLRKNPVVRDRLF 53 (112)
Q Consensus 37 LIRIglrk~PvLRdrLF 53 (112)
+|||+|+|.+.+|.++-
T Consensus 1 ~v~ipl~k~~~~r~~~~ 17 (370)
T d3psga_ 1 LVKVPLVRKKSLRQNLI 17 (370)
T ss_dssp CEEEEEEECCCHHHHHH
T ss_pred CEEEecccCccHHHHHH
Confidence 58999998888888753
No 3
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.64 E-value=30 Score=19.83 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=15.7
Q ss_pred hHHHHHhhccCCCCceehhh
Q 033732 9 QQEAVMRKQNNGPPYKFLVP 28 (112)
Q Consensus 9 ~~e~v~rr~~r~~p~kfLvP 28 (112)
-.+.++.|+.+.|.|.||-|
T Consensus 20 fE~~l~~~e~~np~F~FL~~ 39 (63)
T d2dt6a1 20 FEARIRQNEINNPKFNFLNP 39 (63)
T ss_dssp HHHHHHHHSTTCGGGGGGST
T ss_pred HHHHHHHhccCCCcCcCCCC
Confidence 35566778888999999976
No 4
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus [TaxId: 32046]}
Probab=11.36 E-value=32 Score=29.24 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhceeccccccc
Q 033732 54 TAVLAGAFAHGFYLVYPLFYS 74 (112)
Q Consensus 54 ~~vLagAFaHG~YLlt~~Y~~ 74 (112)
+-.+.||||||+-.+-.-||-
T Consensus 390 gflivGAfAH~aIF~VRDYdp 410 (743)
T d1jb0a_ 390 GFLVVGGAAHGAIFMVRDYDP 410 (743)
T ss_dssp HHHHHHHHHHHHHHHHHTCCG
T ss_pred hhhhhcccccceeeeeeccCc
Confidence 456789999999887777764
No 5
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.76 E-value=42 Score=19.29 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=8.9
Q ss_pred eeeccCCCchhhH
Q 033732 38 IRIGLRKNPVVRD 50 (112)
Q Consensus 38 IRIglrk~PvLRd 50 (112)
+||..+.||.+++
T Consensus 1 ~~ItS~~N~~iK~ 13 (105)
T d1ipaa2 1 MRITSTANPRIKE 13 (105)
T ss_dssp CEECCTTSHHHHH
T ss_pred CcccCCCCHHHHH
Confidence 4677778877543
No 6
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]}
Probab=10.54 E-value=35 Score=28.94 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhceeccccccc
Q 033732 54 TAVLAGAFAHGFYLVYPLFYS 74 (112)
Q Consensus 54 ~~vLagAFaHG~YLlt~~Y~~ 74 (112)
+-.+.||||||+-.+-.-||-
T Consensus 383 gflivGAfAHaaIF~VRDYdp 403 (739)
T d1jb0b_ 383 GFLMVGAFAHGAIFLVRDYDP 403 (739)
T ss_dssp HHHHHHHHHHHHHHHHHTCCS
T ss_pred hhhhhcccccceeEEeeccCc
Confidence 456789999999877766764
No 7
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.21 E-value=26 Score=25.45 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhh------------------ceeccccccchhhhccchhh
Q 033732 49 RDRLFTAVLAGAFAHG------------------FYLVYPLFYSIDCFAGQFNC 84 (112)
Q Consensus 49 RdrLF~~vLagAFaHG------------------~YLlt~~Y~~~d~~~~~~~~ 84 (112)
.+.||+..-|-.++-. -+-+|-.-.|++.|+.-|+|
T Consensus 628 ~~QLFFi~~a~~~C~~~~~~~~~~~~~~~~h~p~~~RvN~~L~n~~eFa~aF~C 681 (696)
T d1dmta_ 628 HKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHC 681 (696)
T ss_dssp HHHHHHHHHHHHTCEEECHHHHHHHHHHCSSCCHHHHHHHHHHTCHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHccCCHHHHHHHhccCCCCcHHHHhHHHHhcCHHHHHhcCC
Confidence 5899999999998832 13366678899999999999
No 8
>d2h1ca1 c.120.1.1 (A:1-138) Trafficking protein B {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.78 E-value=61 Score=18.74 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhhhceecccc
Q 033732 48 VRDRLFTAVLAGAFAHGFYLVYPL 71 (112)
Q Consensus 48 LRdrLF~~vLagAFaHG~YLlt~~ 71 (112)
..|.+ ..|.|..||..|+|.-
T Consensus 102 ~~D~~---IaA~Ai~~~~~LvT~N 122 (138)
T d2h1ca1 102 AADGY---IAATAKQHSLTVATRD 122 (138)
T ss_dssp HHHHH---HHHHHHHHTCEEECSC
T ss_pred hHHHH---HHHHHHHcCCEEEECC
Confidence 45654 4567999999999963
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.44 E-value=83 Score=17.74 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhh
Q 033732 52 LFTAVLAGAFAH 63 (112)
Q Consensus 52 LF~~vLagAFaH 63 (112)
-|+++.+++|.|
T Consensus 19 ~~~~~~~~~~fH 30 (45)
T d1kqfb2 19 GFIATFAGLIFH 30 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 467777788877
No 10
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=8.35 E-value=48 Score=20.44 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=10.4
Q ss_pred hhceeccccccc
Q 033732 63 HGFYLVYPLFYS 74 (112)
Q Consensus 63 HG~YLlt~~Y~~ 74 (112)
.|..++.|+||+
T Consensus 12 ~g~~iIdDsYNA 23 (135)
T d1gg4a1 12 ENQLLLDDSYNA 23 (135)
T ss_dssp TTEEEEECCSCC
T ss_pred CCcEEEecCCcC
Confidence 578899999986
Done!