BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033734
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 28 PLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
LH + + + II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+ +A ++ D+ RS+G+G+VT S+E E +A+A+++G+ LDGR I V+ R NT
Sbjct: 217 VVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNT 275
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DMNGKLLDGRVIFVDNVRPSRRYN 96
A +I ++ +RS+G+G+VT ST EEA KA+ D+NG+LL RP R
Sbjct: 126 AEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPR 185
Query: 97 TDAPLAR 103
T P R
Sbjct: 186 TFQPTYR 192
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V R +R +
Sbjct: 218 LSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQS 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ + S+GYG+V F T E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 34 ISDSFLFAATI----IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ FL TI +M +G + SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 27/86 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AF+ FG+VTE AT+I D+ RS+G+G+V+F
Sbjct: 51 LKQAFTSFGEVTE---------------------------ATVIADRETGRSRGFGFVSF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD 87
S E+ A A+ +M+GK L+GR I V+
Sbjct: 84 SCEDSANNAIKEMDGKELNGRQIRVN 109
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V R +R
Sbjct: 218 LSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG--RAQKRIERQG 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+ + ++ D+ + S+GYG+V F T+E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ + G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 99
+ ++MD RS+G+G+V + EEAQKA+ +MNGK ++GR+++V R +R
Sbjct: 218 LSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG--RAQKRIERQG 274
Query: 100 PLARQSAQSPEE 111
L R+ Q +E
Sbjct: 275 ELKRKFEQIKQE 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 40 FAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+T +M +G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
S+GYG+V F T+E A +A+ MNG LL+ R +FV + + SRR
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK-SRR 177
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSR 93
A +I D+ RSKG+G+VT S+ +E QKA+ +NG LDGR I V RP R
Sbjct: 286 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I DK RS+G+G+VT ST E + A NG +GR + V+ P
Sbjct: 130 VIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ A +I ++G +RS+GYGYV F + A+KA+ +M GK +DGR I D
Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 242
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 54 KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 98
KG+GYV FS E+A+KAL + G+ +D R + +D P R N D
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP--RPNND 350
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF E+A+ A+A MNGK +DGR I VD S
Sbjct: 37 VVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR +FV
Sbjct: 125 ILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
+ LF H ++S A ++ D+ RS+G+G+VT S+E E A+A ++G+ LDGR
Sbjct: 166 EQLFSEHGKVVS------ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 219
Query: 84 IFVD--NVRPSRRY 95
+ V+ RP R +
Sbjct: 220 VRVNVAEERPRRAF 233
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
A +I ++ +RS+G+G+VT ST EEA+KA+ +NG +DGR + V+ P
Sbjct: 84 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP 133
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGRVI V+
Sbjct: 35 SKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 97
+ +A ++ D+ RS+G+G+VT ++E E A+A+++G+ LDGR I V+ R NT
Sbjct: 256 VVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNT 314
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DMNGKLLDGRVIFVDNVRPSR 93
A +I ++ ++S+G+G+VT ST EEA+KA+ D+NG+LL RP R
Sbjct: 165 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPER 221
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +S+G+G+V+F E+AQKA+ DMNGK L+G+ IFV
Sbjct: 222 VMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPI----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ G+ + +
Sbjct: 70 DTMNFDVIKGKPVRI 84
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 87
+I D+ RS+G+G+VTFS+E+ A+ +MNGK LDGR I V+
Sbjct: 39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVN 82
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A +I D+ RSKG+G+VT+ + +E Q A+ ++G LDGR I V RP RR
Sbjct: 233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+I DK RS+G+G+VT S+ E + A NG LDGR + V+ P
Sbjct: 122 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + II D+ RS+G+G+VTF+++E ++A+ MNG+ LDGR I V+ + R
Sbjct: 32 VIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRR 86
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ + +I D+ RS+G+G+VTFS+E A+ +MNGK LDGR I V+ +
Sbjct: 34 ILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 91
+ II D+ RS+G+G+VTF E+ + A+ +MNGK LDGR I V+ +
Sbjct: 35 SKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQS 84
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF E+A+ A+ MNGK +DGR I VD S
Sbjct: 37 VVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V++ E+A KA+ +MNGK + G++IFV R ++ A L R+
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG--RAQKKVERQAELKRK 279
Query: 105 SAQSPEE 111
Q +E
Sbjct: 280 FEQLKQE 286
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPV----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ G+ I +
Sbjct: 70 DTMNFDVIKGKPIRI 84
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPI----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ G+ + +
Sbjct: 70 DTMNFDVIKGKPVRI 84
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPI----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ G+ + +
Sbjct: 70 DTMNFDVIKGKPVRI 84
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + + D RS GY YV F +A++AL MN ++ G+ + +
Sbjct: 37 ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPI----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ G+ + +
Sbjct: 70 DTMNFDVIKGKPVRI 84
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPI----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ G+ + +
Sbjct: 70 DTMNFDVIKGKPVRI 84
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 29/93 (31%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L DAF+ FG V + A +I+D+ RS+G+G+V F
Sbjct: 51 LRDAFAHFGDVVD---------------------------AKVIVDRETGRSRGFGFVNF 83
Query: 62 STEEEAQKALADMNGKLLDGRVIFVD--NVRPS 92
+ E A A+++M+GK L+GR I V+ N RPS
Sbjct: 84 NDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 24 QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 83
Q F +HY S + A ++ D RSKGYG+V F+ E E +A+A+MNG R
Sbjct: 133 QETFRVHY-----SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 84 IFVDNVRPSR 93
+ + P +
Sbjct: 188 MRISAATPKK 197
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+KGYGYV F T A++A+ M G+++ + + +
Sbjct: 271 TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRI 304
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG 81
L + +I +K + +GYG++ F + A++ L NG + G
Sbjct: 50 LVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPG 92
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKS 85
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A A+ MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-DNVRPS 92
+I D+ N+S+G+ +VTF + +A+ A DMNGK LDG+ I V ++P+
Sbjct: 39 LIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKPA 88
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+ + ++ D G N SKG+G+V + T+E A KA+A +NG +++G+ +FV + S+
Sbjct: 124 ILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK 177
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 32/48 (66%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++ D SKG+G+V ++ +EA +A+ +MNG+++ + ++V
Sbjct: 310 ITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 85
IM K +SKG+G+ F + E A+ + + NGK+ G+ I+
Sbjct: 219 IMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIY 259
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R +FV
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 320 ITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+M +SKG+G+V+F E+AQKA+ +MNGK ++G+ +FV
Sbjct: 222 VMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 12 VTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 71
VTE ++Y F P P+ + + D RS GY YV F +A++AL
Sbjct: 22 VTEAMLYEKFS--PAGPI----------LSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 72 ADMNGKLLDGRVIFV 86
MN ++ GR + +
Sbjct: 70 DTMNFDVIKGRPVRI 84
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 27/90 (30%)
Query: 2 LADAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTF 61
L AFSQFG +T+ + II D+ RS+G+G+VTF
Sbjct: 22 LEQAFSQFGDITD---------------------------SKIINDRETGRSRGFGFVTF 54
Query: 62 STEEEAQKALADMNGKLLDGRVIFVDNVRP 91
E+ + A+ MNG+ LDGR I V+ +
Sbjct: 55 KDEKSMRDAIEGMNGQELDGRNITVNEAQS 84
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
IM S+G+G+V +S EEA KA+++MNGK+LD R ++V
Sbjct: 361 IMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYV 402
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+SKG+G+V F EAQKA+ +++ G+ +FV
Sbjct: 265 KSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFV 299
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A ++ D+ RS+G+G+VT+S+ EE A+ ++G L+GR I V RP RR
Sbjct: 223 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRR 277
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN-VRPSRRYNT 97
+I DK RS+G+G+VT S++EE + A NG LDGR + V++ P +R N+
Sbjct: 118 VIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS 172
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF ++A+ A+ MNGK +DGR I VD S
Sbjct: 36 VVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKS 84
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD--NVRPSRR 94
A ++ D+ RS+G+G+VT+S+ EE A+ ++G L+GR I V RP RR
Sbjct: 217 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRR 271
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
+I DK RS+G+G+VT S++EE + A NG LDGR + V++ P +
Sbjct: 118 VIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEK 168
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++MD RSKGYG++TFS E A+KAL +NG L GR + V +V
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++MD RSKGYG++TFS E A+KAL +NG L GR + V +V
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV-DNVRPSRRYNTDAP 100
++ D+ N+S+G+ +VTF + +A+ A DMNGK LDG+ I V ++P+ + + P
Sbjct: 39 LMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKPAFKSSRWVP 96
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 89
++MD RSKGYG++TFS E A+KAL +NG L GR + V +V
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 45 IMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQ 104
+M +SKG+G+V+F + E A+KA+ +MNG+ ++G++IFV R ++ A L +
Sbjct: 221 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVG--RAQKKVERQAELKQM 278
Query: 105 SAQSPEE 111
Q E
Sbjct: 279 FEQLKRE 285
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 53 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDAPLARQSAQ 107
SKGY +V F + A +A+ +MNGKLL G +FV R R + +A L ++++
Sbjct: 136 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVG--RFKNRKDREAELRSKASE 188
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 52 RSKGYGYVTFSTEEEAQKALADMNGKLL 79
+SKG+G + FS+ E+A KA+ +MNG++L
Sbjct: 330 QSKGFGLICFSSPEDATKAMTEMNGRIL 357
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 12 VTEDLVYFYFKS-QPLFPLHYFLISDSFLFAATIIMDKGKNRSKGYGYVTFSTEEEAQKA 70
VTEDL++ F + P+ + I D+ RS GY YV F +AQKA
Sbjct: 21 VTEDLLFRKFSTVGPVLSIR-------------ICRDQVTRRSLGYAYVNFLQLADAQKA 67
Query: 71 LADMNGKLLDGRVI 84
L MN ++ G+ I
Sbjct: 68 LDTMNFDIIKGKSI 81
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 90
L + II D+ RS+G+G+VTF E+ + A+ MNG+ LDGR I V+ +
Sbjct: 34 LVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 94
++ D+ RS+G+G++TF+ E A + MNG+ LDGR I VD+ S R
Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSAR 87
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 32 FLISDSF------LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 85
+++SD+F + A +++D+ RSKGYG+V F+ E E +A+ +MNG+ R +
Sbjct: 168 YMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMR 227
Query: 86 V 86
+
Sbjct: 228 I 228
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 41 AATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG-----RVIFVDNVRPSRRY 95
+A +I +K +S+GYG++ F + A++ L NG + R+ + +R+
Sbjct: 88 SAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRF 147
Query: 96 NTDAP 100
T+ P
Sbjct: 148 QTEGP 152
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF ++A+ A+ MNGK +DGR I VD S
Sbjct: 36 VVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKS 84
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD-NVRPSRRYNT 97
+I DK RS+G+G+VT ST+EE + A NG +DGR I V+ P++R N+
Sbjct: 119 VIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENS 173
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 42 ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV--RPSRRY 95
A ++ D+ RS+G+G+VT+S+ +E A+ +NG LDGR I V RP R++
Sbjct: 237 AKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 39 LFAATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 86
+ +A +++D+ +SKG+G+V F+T EEA KA+ +MN ++++G+ ++V
Sbjct: 362 ITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 4 DAFSQFGQVTEDLVYFYFKSQPLFPLHYFLISDSFLFA-----ATIIMDKGKN-RSKGYG 57
D S+F ++ + Y K+ L+Y S LF+ +I ++K ++ +SKG+G
Sbjct: 220 DRESKFEEMKANFTNIYVKN---IDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFG 276
Query: 58 YVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 93
+V F E A KA+ ++N K ++G+ I+V + R
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKR 312
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV--IFVDNVRPSRRYNTDA 99
+ D +S GY YV + E+ +KA+ ++N ++GR I PS R + D
Sbjct: 83 VCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG 140
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 44 IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 92
++ D+ RS+G+G+VTF ++A+ A+ MNGK +DGR I VD S
Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,747,859
Number of Sequences: 539616
Number of extensions: 1519249
Number of successful extensions: 4716
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 3580
Number of HSP's gapped (non-prelim): 1177
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)