Query 033736
Match_columns 112
No_of_seqs 101 out of 179
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lif_A Core protein P21; signa 84.6 0.2 6.8E-06 25.2 0.0 20 8-27 3-22 (27)
2 2kix_A BM2 protein; channel, t 47.4 4.8 0.00016 20.4 0.3 13 98-110 2-14 (33)
3 3mk7_C Cytochrome C oxidase, C 30.1 21 0.0007 26.6 1.5 25 8-32 2-26 (311)
4 1v54_I STA, cytochrome C oxida 27.2 63 0.0021 19.5 3.1 39 70-108 19-67 (73)
5 1gng_X Frattide, glycogen synt 24.3 20 0.0007 19.0 0.4 10 97-106 9-18 (39)
6 4afj_X Proto-oncogene FRAT1; t 22.8 20 0.00068 18.1 0.2 9 99-107 2-10 (30)
7 2knc_A Integrin alpha-IIB; tra 19.5 1.2E+02 0.004 17.2 3.1 34 1-34 3-36 (54)
8 1eys_H Photosynthetic reaction 18.2 97 0.0033 23.0 3.2 20 70-89 12-31 (259)
9 2uwq_A Apoptosis-stimulating o 17.3 34 0.0011 21.4 0.4 9 100-108 65-73 (86)
10 1rzh_H Reaction center protein 17.1 1.1E+02 0.0037 22.8 3.2 20 70-89 13-32 (260)
No 1
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=84.61 E-value=0.2 Score=25.17 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHhhhhhhhh
Q 033736 8 SQLFPIFILTIMALPLVPYT 27 (112)
Q Consensus 8 g~~fpyFvlt~l~lvLiP~T 27 (112)
|--|++|+|+++++.++|..
T Consensus 3 gcsfsiFlLaLlscLt~Pas 22 (27)
T 2lif_A 3 GFPFSIFLLALLSCITVPVS 22 (27)
Confidence 55789999999999999975
No 2
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=47.37 E-value=4.8 Score=20.44 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=10.1
Q ss_pred cchhhhhhhhccc
Q 033736 98 FVKILTMSAWSFC 110 (112)
Q Consensus 98 fDPYeIL~~~~~~ 110 (112)
-.|+.|||.-||.
T Consensus 2 lep~qilsi~sfi 14 (33)
T 2kix_A 2 LEPFQILSISSFI 14 (33)
T ss_dssp CTTTHHHHHHHHH
T ss_pred CchhHHHHHHHHH
Confidence 4699999987764
No 3
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=30.12 E-value=21 Score=26.56 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHhhhhhhhhhhhhh
Q 033736 8 SQLFPIFILTIMALPLVPYTILKLC 32 (112)
Q Consensus 8 g~~fpyFvlt~l~lvLiP~T~~~l~ 32 (112)
+++|.+|+..+....++-+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (311)
T 3mk7_C 2 STFWSGYIALLTLGTIVALFWLIFA 26 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888866666666655554443
No 4
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=27.23 E-value=63 Score=19.45 Aligned_cols=39 Identities=5% Similarity=0.061 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc------cc-cccch---hhhhhhhc
Q 033736 70 SNLSLVLLWVIMIILIYYIKSTSR------EV-NMFVK---ILTMSAWS 108 (112)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~~~~~------~~-~~fDP---YeIL~~~~ 108 (112)
++++..++-.+.+..+++....++ +- +.||| ||-+..-|
T Consensus 19 ~~i~~a~~lsl~~~~~~k~~v~~pRK~aYadFYknYD~~k~ferMk~aG 67 (73)
T 1v54_I 19 FHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAG 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHcc
Confidence 555555555555555555522222 33 78999 88776544
No 5
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=24.25 E-value=20 Score=19.05 Aligned_cols=10 Identities=0% Similarity=-0.459 Sum_probs=6.7
Q ss_pred ccchhhhhhh
Q 033736 97 MFVKILTMSA 106 (112)
Q Consensus 97 ~fDPYeIL~~ 106 (112)
.=|||+.|.-
T Consensus 9 ~ddP~~lLQ~ 18 (39)
T 1gng_X 9 DDDPHRLLQQ 18 (39)
T ss_dssp --CHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3599999864
No 6
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=22.77 E-value=20 Score=18.05 Aligned_cols=9 Identities=0% Similarity=-0.260 Sum_probs=5.2
Q ss_pred chhhhhhhh
Q 033736 99 VKILTMSAW 107 (112)
Q Consensus 99 DPYeIL~~~ 107 (112)
|||+.|.-.
T Consensus 2 Dph~lLQqL 10 (30)
T 4afj_X 2 DPHRLLQQL 10 (30)
T ss_dssp --CHHHHHH
T ss_pred CHHHHHHHH
Confidence 899998643
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.53 E-value=1.2e+02 Score=17.17 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=17.4
Q ss_pred CCccccCCCchhHHHHHHHhhhhhhhhhhhhhcc
Q 033736 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHA 34 (112)
Q Consensus 1 ~~~YDE~g~~fpyFvlt~l~lvLiP~T~~~l~~~ 34 (112)
|++=+++=..|.+.+..+.++.++.+-...++|.
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444455666655555555555444455443
No 8
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=18.24 E-value=97 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.713 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033736 70 SNLSLVLLWVIMIILIYYIK 89 (112)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~ 89 (112)
--++|-+.|+.|+.|+|...
T Consensus 12 a~~~~~~fw~ffa~li~yl~ 31 (259)
T 1eys_H 12 AQITIWAFWLFFFGLIIYLR 31 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44677789999999998874
No 9
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=17.26 E-value=34 Score=21.39 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=5.6
Q ss_pred hhhhhhhhc
Q 033736 100 KILTMSAWS 108 (112)
Q Consensus 100 PYeIL~~~~ 108 (112)
|++||++||
T Consensus 65 ~l~~l~~WG 73 (86)
T 2uwq_A 65 MFDVLQRFG 73 (86)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 566666665
No 10
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=17.06 E-value=1.1e+02 Score=22.84 Aligned_cols=20 Identities=30% Similarity=0.873 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033736 70 SNLSLVLLWVIMIILIYYIK 89 (112)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~ 89 (112)
--++|-+.|+.|+.|+|...
T Consensus 13 Aq~~l~~Fw~ffa~Li~yL~ 32 (260)
T 1rzh_H 13 ASLAIYSFWIFLAGLIYYLQ 32 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44667789999999998874
Done!