BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033737
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium
discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+RDA+DPL TTD+
Sbjct: 8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67
Query: 96 TRQLGLI 102
R LGL+
Sbjct: 68 KRFLGLV 74
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLK 91
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYK 63
Query: 92 TTDQTRQLGLI 102
T+ TRQLGL+
Sbjct: 64 LTEDTRQLGLV 74
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLK 91
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYK 63
Query: 92 TTDQTRQLGLI 102
T+ TRQLGL+
Sbjct: 64 LTEDTRQLGLV 74
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR+ +D K T
Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPED-GKLTGA 79
Query: 96 TRQLGLI 102
R+LGL+
Sbjct: 80 IRKLGLV 86
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT--- 92
++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD T
Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELI 82
Query: 93 TDQTRQLGL 101
+ R+LGL
Sbjct: 83 SKNARKLGL 91
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDA 86
+L K++DK + +KL G R+V+G L+G+D +N+V+DEAVE+ +D
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDG 52
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
DL K++DK +Q+KL R VTGTL+G+DQ +NLV+D VE
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 I 102
+
Sbjct: 60 V 60
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 I 102
+
Sbjct: 60 V 60
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1
Length = 76
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 I 102
+
Sbjct: 60 V 60
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=2
SV=2
Length = 76
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF DK +KL GGR V G L+G+D +NLV+DE VE + T+ Q + +G+
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
Query: 102 I 102
+
Sbjct: 60 V 60
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD 85
++ K++DK + +KL GGR VTG L+G+D +N+VLD+ VE +D
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKD 51
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K++DK + + + G R+V G L+GYD LN+VLD+A+E + +DP QLGL
Sbjct: 6 ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPA----NNHQLGL 59
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L K++DK +Q+ L R + GTL+G+DQ +NLV+D VE
Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE 48
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
DL K++D+ V V+L G R+V G L+GYD LN+VL++++E
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE 47
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
MS R VL+ A ++ V V+L GGR+ G L+GYD +NLVLD A E LK
Sbjct: 1 MSQRPLDVLNEA--LNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEE--------LKE 50
Query: 93 TDQTRQLGLI 102
+ +R+LG I
Sbjct: 51 NEASRKLGTI 60
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD 87
M+ K+ DL K +DK + +KL G R V G L+G+D +N+ L + VE + +
Sbjct: 1 MTFGKQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTE 55
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD 87
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E LRD +
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE-LRDGE 52
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
ET LDL K +D+ V +KL G R + GTL+ +D N+VL +AVE
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQL 99
LDL + +D+ V VKL G R++ G L YD+ LN+VL +A E + DD + TD+ + L
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDD--EETDKDKAL 68
Query: 100 GLI 102
I
Sbjct: 69 KTI 71
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD 87
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E LR+ +
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE-LREGE 52
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
+ LA F+++ VQV GR V G+LKG+D NL+L ++ E + D ++T
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMET 52
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD 87
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E LR+ +
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE-LREGE 52
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 45 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD 88
K +++ V + L R+ GTL G+D +N++L++AVE+L D +D
Sbjct: 14 KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPED 57
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD 87
M R +L+ A ++ V V+L G R+ G L+GYD +NLVLDEA E L+D +
Sbjct: 1 MGNRPLDILNDA--LNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEA-EELKDGE 52
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 82
+VD V VKL G ++ G LK YDQ LN++L +A E
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEI 52
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 82
L + + V V+L GGR+ GTL GYD +NLVL +A E
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEI 48
>sp|Q75BR7|LSM6_ASHGO U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=LSM6 PE=3 SV=1
Length = 85
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPL 90
L+ + K V VKL G GTL+ D +N+ L +A E+ +P+
Sbjct: 17 LSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPV 64
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 34 SGRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR 84
G E LDL + +D+ + VK+ R++ G L YDQ LN++L + E ++
Sbjct: 6 EGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIK 57
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++ V +KL G R+ G LK +D +NLVL++A E L+ + TR+LG +
Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE--------LEDGEVTRRLGTV 69
>sp|Q6GQ67|LMD1A_XENLA LSM domain-containing protein 1-A OS=Xenopus laevis GN=lsmd1-a PE=3
SV=1
Length = 113
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD-PLKTTDQTRQLGL 101
L +++ +++++T GR + G D+ N++L A EFLR +D P++ + R LGL
Sbjct: 33 LESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPVR---EPRVLGL 89
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>sp|A4IGZ4|LSMD1_XENTR LSM domain-containing protein 1 OS=Xenopus tropicalis GN=lsmd1 PE=3
SV=2
Length = 113
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD-PLKTTDQTRQLGL 101
L +++ +++++T GR + G D+ N++L A EFLR +D P++ + R LGL
Sbjct: 33 LESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPVR---EPRVLGL 89
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLG 100
L++ + V V+L G + G L+ D +N+VLDE EF+ DQ R G
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFV--------GGDQARNYG 70
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 58 GRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
G ++ G + G+D+ +N+V+DEAVE ++ D + ++ LG I
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKI 80
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
L + + V + + G R+ +G L+GYD +N+VL A E +
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEII 54
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL 83
L + + V + + G R+ +G L+GYD +N+VL A E +
Sbjct: 14 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEII 54
>sp|Q8SQH7|LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1830 PE=3 SV=1
Length = 70
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76
L ++ + V+VK G TGTL+G+D+ +NL+L
Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML 41
>sp|Q6NU60|LMD1B_XENLA LSM domain-containing protein 1-B OS=Xenopus laevis GN=lsmd1-b
PE=3 SV=1
Length = 111
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD 87
L +++ +++++T GR + G D+ N++L A EFLR +D
Sbjct: 33 LESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSD 77
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L +VD+ V V L G+++ G L+ +DQ NL+L +E
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 81
L ++ K V V GR + GTL+G DQ +N+VL++ E
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHE 42
>sp|B0V5S5|MNME_ACIBY tRNA modification GTPase MnmE OS=Acinetobacter baumannii (strain
AYE) GN=mnmE PE=3 SV=1
Length = 454
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 29 KSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD 88
+ + ++G T+ D A + G V+ G R+ ++ D LL LV D L DD
Sbjct: 260 EKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLL-LVYD-----LNQGDD 313
Query: 89 PLKTTDQ-------TRQLGLIGNCCD 107
PLK + R+L LIGN CD
Sbjct: 314 PLKLAQEYFSEHIEPRRLMLIGNKCD 339
>sp|A3M8Y8|MNME_ACIBT tRNA modification GTPase MnmE OS=Acinetobacter baumannii (strain
ATCC 17978 / NCDC KC 755) GN=mnmE PE=3 SV=2
Length = 454
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 29 KSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD 88
+ + ++G T+ D A + G V+ G R+ ++ D LL LV D L DD
Sbjct: 260 EKISLNGLPITLTDTAGLRETGDIVEKEGIRRAIKEIEQADLLL-LVYD-----LNQGDD 313
Query: 89 PLKTTDQ-------TRQLGLIGNCCD 107
PLK + R+L LIGN CD
Sbjct: 314 PLKLAQEYFSEHIEPRRLMLIGNKCD 339
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
MSG ++ + ++++ ++V + GR + G +D+ +N+V+ +A EF R +
Sbjct: 1 MSGMPKSS-KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKED 59
Query: 93 TDQTRQLGLI 102
++ R LG+I
Sbjct: 60 REEKRTLGMI 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,385,192
Number of Sequences: 539616
Number of extensions: 1281382
Number of successful extensions: 3892
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3829
Number of HSP's gapped (non-prelim): 88
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)