Query 033737
Match_columns 112
No_of_seqs 109 out of 1089
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.9 9E-23 3.1E-27 142.5 8.5 86 25-111 10-95 (113)
2 3s6n_G Small nuclear ribonucle 99.9 1.1E-21 3.8E-26 127.7 7.0 65 39-111 5-69 (76)
3 1h64_1 SnRNP SM-like protein; 99.9 2.7E-21 9.2E-26 125.1 8.5 64 40-111 6-69 (75)
4 1th7_A SnRNP-2, small nuclear 99.8 3.1E-21 1.1E-25 126.7 8.7 71 33-111 3-74 (81)
5 3bw1_A SMX4 protein, U6 snRNA- 99.8 4.1E-21 1.4E-25 130.2 8.8 71 40-111 12-82 (96)
6 1d3b_B Protein (small nuclear 99.8 3.1E-21 1.1E-25 128.9 8.0 72 40-111 6-79 (91)
7 1i4k_A Putative snRNP SM-like 99.8 6E-21 2.1E-25 123.8 8.3 64 40-111 6-69 (77)
8 4emk_B U6 snRNA-associated SM- 99.8 4.8E-21 1.6E-25 124.3 7.4 63 40-110 6-68 (75)
9 4emg_A Probable U6 snRNA-assoc 99.8 1E-20 3.4E-25 127.8 9.1 74 38-111 8-87 (93)
10 4emk_A U6 snRNA-associated SM- 99.8 1.5E-20 5.2E-25 127.6 9.6 65 40-111 21-86 (94)
11 3s6n_F Small nuclear ribonucle 99.8 1.1E-20 3.9E-25 125.9 8.4 69 33-110 1-70 (86)
12 1mgq_A SM-like protein; LSM, R 99.8 2.2E-20 7.6E-25 123.3 9.5 64 40-111 17-80 (83)
13 1b34_B Protein (small nuclear 99.8 1.2E-20 4E-25 132.1 7.4 93 17-111 8-108 (118)
14 1i8f_A Putative snRNP SM-like 99.8 2.4E-20 8.3E-25 122.5 8.1 63 40-111 13-75 (81)
15 1ljo_A Archaeal SM-like protei 99.8 3E-20 1E-24 120.8 8.3 63 40-110 7-70 (77)
16 3pgw_B SM B; protein-RNA compl 99.8 2.7E-20 9.3E-25 143.7 9.1 72 40-111 6-79 (231)
17 3s6n_E Small nuclear ribonucle 99.8 6.4E-20 2.2E-24 124.0 6.5 72 33-111 10-86 (92)
18 1n9r_A SMF, small nuclear ribo 99.8 1E-19 3.6E-24 123.0 7.1 63 40-110 23-86 (93)
19 2fwk_A U6 snRNA-associated SM- 99.8 6.8E-20 2.3E-24 128.8 5.1 72 40-111 29-108 (121)
20 1d3b_A Protein (small nuclear 99.8 1.4E-18 4.7E-23 113.0 8.3 62 41-110 8-69 (75)
21 4emh_A Probable U6 snRNA-assoc 99.8 9.8E-19 3.4E-23 120.8 7.8 62 42-110 20-81 (105)
22 1b34_A Protein (small nuclear 99.7 4.8E-18 1.6E-22 119.2 7.9 63 40-110 4-66 (119)
23 1m5q_A SMAP3, small nuclear ri 99.7 6.7E-17 2.3E-21 115.3 6.8 58 41-110 3-60 (130)
24 2y9a_D Small nuclear ribonucle 99.7 2.3E-16 8E-21 111.9 8.2 63 40-110 7-69 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.7 3E-08 1E-12 66.2 7.1 59 38-110 7-66 (86)
26 3ahu_A Protein HFQ; SM-like mo 96.8 0.0022 7.6E-08 41.8 5.2 46 33-78 4-53 (78)
27 3sb2_A Protein HFQ; SM-like, R 96.6 0.0025 8.6E-08 41.6 4.0 43 33-75 1-47 (79)
28 2ylb_A Protein HFQ; RNA-bindin 96.5 0.0032 1.1E-07 40.6 4.4 35 43-77 14-50 (74)
29 1kq1_A HFQ, HOST factor for Q 96.2 0.011 3.6E-07 38.4 5.4 36 43-78 12-49 (77)
30 1u1s_A HFQ protein; SM-like ba 96.2 0.0079 2.7E-07 39.6 4.7 34 43-76 12-47 (82)
31 2qtx_A Uncharacterized protein 95.9 0.015 5E-07 37.3 4.8 32 47-78 24-55 (71)
32 2y90_A Protein HFQ; RNA-bindin 95.6 0.014 4.9E-07 39.9 4.3 36 43-78 14-51 (104)
33 2vxe_A CG10686-PA; EDC3, CAR-1 95.1 0.16 5.6E-06 33.6 8.1 66 44-109 9-76 (88)
34 4a53_A EDC3; RNA binding prote 94.8 0.037 1.3E-06 38.9 4.4 37 42-79 6-44 (125)
35 2fb7_A SM-like protein, LSM-14 93.8 0.15 5.2E-06 34.2 5.6 68 42-109 13-82 (95)
36 1ycy_A Conserved hypothetical 92.4 0.19 6.5E-06 31.8 4.2 44 41-85 9-52 (71)
37 1ib8_A Conserved protein SP14. 91.4 0.29 9.8E-06 35.2 4.8 32 40-71 96-131 (164)
38 2vc8_A Enhancer of mRNA-decapp 91.0 0.39 1.3E-05 31.6 4.7 36 45-80 6-43 (84)
39 3rux_A BIRA bifunctional prote 90.1 0.37 1.3E-05 36.9 4.6 34 47-80 223-256 (270)
40 3hfo_A SSR3341 protein; HFQ, S 89.6 0.55 1.9E-05 29.8 4.4 43 35-77 6-50 (70)
41 3hfn_A ASL2047 protein; HFQ, S 88.3 0.75 2.6E-05 29.3 4.3 41 38-78 11-53 (72)
42 2xk0_A Polycomb protein PCL; t 82.5 3.3 0.00011 26.1 5.2 39 47-85 18-57 (69)
43 1y96_B Gemin7, SIP3, GEM-assoc 82.4 2.7 9.3E-05 27.5 5.0 57 41-110 22-79 (85)
44 2eay_A Biotin [acetyl-COA-carb 81.7 1.1 3.6E-05 33.4 3.1 31 47-79 187-217 (233)
45 2ej9_A Putative biotin ligase; 81.5 3.2 0.00011 30.8 5.8 32 46-78 190-221 (237)
46 1bia_A BIRA bifunctional prote 80.9 3 0.0001 32.1 5.6 33 46-79 271-303 (321)
47 2dxu_A Biotin--[acetyl-COA-car 73.5 2.6 8.8E-05 31.4 3.2 30 47-78 188-217 (235)
48 3bfm_A Biotin protein ligase-l 70.8 5.6 0.00019 29.3 4.5 28 46-78 192-219 (235)
49 3rkx_A Biotin-[acetyl-COA-carb 70.0 5 0.00017 31.2 4.2 32 46-78 277-308 (323)
50 2rm4_A CG6311-PB, DM EDC3; enh 65.3 15 0.0005 24.7 5.2 38 44-82 8-46 (103)
51 2e12_A SM-like motif, hypothet 57.3 11 0.00036 25.2 3.3 22 45-66 23-46 (101)
52 4hcz_A PHD finger protein 1; p 51.8 20 0.00069 21.8 3.7 38 47-84 6-46 (58)
53 3fb9_A Uncharacterized protein 45.0 15 0.00051 24.1 2.5 28 41-68 18-49 (90)
54 1ky9_A Protease DO, DEGP, HTRA 44.5 28 0.00096 28.0 4.6 31 49-79 111-141 (448)
55 4a8c_A Periplasmic PH-dependen 43.9 30 0.001 27.6 4.7 31 49-79 88-118 (436)
56 2qqr_A JMJC domain-containing 42.4 26 0.00088 23.9 3.5 23 47-69 8-30 (118)
57 2eqj_A Metal-response element- 41.9 35 0.0012 21.1 3.8 38 47-84 16-56 (66)
58 2m0o_A PHD finger protein 1; t 41.0 15 0.00053 23.6 2.0 38 47-84 29-69 (79)
59 1x4r_A PARP14 protein; WWE dom 39.0 2.4 8.1E-05 28.5 -2.1 20 62-81 34-53 (99)
60 3stj_A Protease DEGQ; serine p 35.0 43 0.0015 25.8 4.2 31 49-79 88-118 (345)
61 3sti_A Protease DEGQ; serine p 33.6 45 0.0015 24.5 3.9 31 49-79 88-118 (245)
62 2j3t_D Trafficking protein par 31.7 11 0.00036 28.5 0.2 62 9-70 3-68 (219)
63 3pv2_A DEGQ; trypsin fold, PDZ 31.7 40 0.0014 27.1 3.6 31 49-79 102-132 (451)
64 1sg5_A ORF, hypothetical prote 30.8 24 0.00083 22.6 1.8 25 41-65 18-42 (86)
65 3lgi_A Protease DEGS; stress-s 28.4 75 0.0026 22.7 4.3 31 49-79 77-107 (237)
66 3qx1_A FAS-associated factor 1 27.8 39 0.0013 20.6 2.4 23 49-71 8-30 (84)
67 1y8t_A Hypothetical protein RV 27.7 65 0.0022 24.1 4.0 32 48-79 63-94 (324)
68 1te0_A Protease DEGS; two doma 27.6 74 0.0025 23.8 4.3 31 50-80 67-97 (318)
69 3tjo_A Serine protease HTRA1; 27.4 80 0.0027 22.6 4.3 32 48-79 86-117 (231)
70 2wr8_A Putative uncharacterize 27.0 45 0.0016 25.4 3.0 21 58-78 171-191 (259)
71 1lcy_A HTRA2 serine protease; 26.9 77 0.0026 23.9 4.3 31 49-79 71-101 (325)
72 2zbv_A Uncharacterized conserv 26.1 48 0.0016 25.3 3.0 21 58-78 167-187 (263)
73 3tee_A Flagella basal BODY P-r 25.2 50 0.0017 24.2 2.9 22 46-67 169-190 (219)
74 4fln_A Protease DO-like 2, chl 21.6 79 0.0027 26.4 3.7 30 49-78 97-127 (539)
75 3qo6_A Protease DO-like 1, chl 21.6 1E+02 0.0035 23.5 4.1 31 49-79 77-107 (348)
76 3num_A Serine protease HTRA1; 20.3 1.5E+02 0.005 22.3 4.8 31 49-79 70-100 (332)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.88 E-value=9e-23 Score=142.54 Aligned_cols=86 Identities=44% Similarity=0.653 Sum_probs=52.8
Q ss_pred cccccccccCCCCCChhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEE
Q 033737 25 LGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGN 104 (112)
Q Consensus 25 ~~~~~~~~ms~~~~~~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvI 104 (112)
++....-...+++.+.++|.+|+|++|+|+|+|||.|+|+|.|||+||||+|++|+|++...+.. ......|.+|+++|
T Consensus 10 ~~~~~~~~~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~-~~~~~~r~lG~v~I 88 (113)
T 4emk_C 10 PGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVV 88 (113)
T ss_dssp ----------------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------CCEEEEEEEEE
T ss_pred CCCCCCCccCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCc-ccccceeEccEEEE
Confidence 33334444556678899999999999999999999999999999999999999999998753211 12247899999999
Q ss_pred eCCceec
Q 033737 105 CCDACVT 111 (112)
Q Consensus 105 RGd~iv~ 111 (112)
||++|+.
T Consensus 89 RG~nIv~ 95 (113)
T 4emk_C 89 RGTTLVL 95 (113)
T ss_dssp CTTTEEE
T ss_pred CCCeEEE
Confidence 9999973
No 2
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.85 E-value=1.1e-21 Score=127.72 Aligned_cols=65 Identities=37% Similarity=0.678 Sum_probs=49.4
Q ss_pred ChhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 39 ~~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
..+.|.+++|++|+|+|+|||.|+|+|.|||+|||++|++|.|++.+ .+.+.+|+++|||++|+.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~--------~~~~~lg~v~iRG~~I~~ 69 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS--------GQQNNIGMVVIRGNSIIM 69 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------CBSSEEECSSSEEE
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC--------CcEeEcCEEEECCCeEEE
Confidence 46789999999999999999999999999999999999999999764 246889999999999973
No 3
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.85 E-value=2.7e-21 Score=125.08 Aligned_cols=64 Identities=30% Similarity=0.360 Sum_probs=58.7
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
...|.+++|++|+|+|+|||.|+|+|.|||+|||++|++|.|++.+ ...+.+|.++|||++|+.
T Consensus 6 ~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~ 69 (75)
T 1h64_1 6 LDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG--------EVVKRYGKIVIRGDNVLA 69 (75)
T ss_dssp HHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEE
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC--------CceeECCEEEECCCEEEE
Confidence 5568999999999999999999999999999999999999999863 368999999999999973
No 4
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.85 E-value=3.1e-21 Score=126.67 Aligned_cols=71 Identities=37% Similarity=0.461 Sum_probs=61.8
Q ss_pred cCCCCCChh-hHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 33 MSGRKETVL-DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 33 ms~~~~~~~-~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
|+..+..|. .|.+++|++|+|+|+|||.|+|+|.|||+|||++|++|.|++.+ ...+.+|.++|||++|+.
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~ 74 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD--------GSGKKLGTIVIRGDNVIL 74 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS--------SCEEEEEEEEECGGGEEE
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC--------CceeECCEEEECCCEEEE
Confidence 555544444 58999999999999999999999999999999999999999854 357899999999999873
No 5
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.1e-21 Score=130.24 Aligned_cols=71 Identities=27% Similarity=0.362 Sum_probs=61.5
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
...|.+++|++|+|+|+|||.|+|+|.|||+||||+|++|+|++...+++. .....|.+|+++|||++|+.
T Consensus 12 ~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~-~~~~~r~lG~v~IRG~nVv~ 82 (96)
T 3bw1_A 12 LDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEE-LSESERRCEMVFIRGDTVTL 82 (96)
T ss_dssp HHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTC-CCEEEEEEEEEEECGGGEEE
T ss_pred HHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccc-cCcceeEcCEEEECCCEEEE
Confidence 556899999999999999999999999999999999999999987654321 12468999999999999973
No 6
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.85 E-value=3.1e-21 Score=128.85 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=59.8
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCC--CccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDP--LKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~--~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
...|.+++|++|+|+|+|||.|+|+|.|||+||||+|++|+|++....++ .......+.+|+++|||++|+.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~ 79 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEE
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEE
Confidence 45789999999999999999999999999999999999999986432211 1123578999999999999973
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.84 E-value=6e-21 Score=123.83 Aligned_cols=64 Identities=36% Similarity=0.485 Sum_probs=58.6
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
...|.+++|++|+|+|+||+.|.|+|.|||+|||++|++|.|++.+ ...+.+|.++|||++|+.
T Consensus 6 ~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~ 69 (77)
T 1i4k_A 6 LDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG--------EVVRKVGSVVIRGDTVVF 69 (77)
T ss_dssp HHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC--------CcEeECCEEEECCCEEEE
Confidence 4568999999999999999999999999999999999999999864 368899999999999873
No 8
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.84 E-value=4.8e-21 Score=124.27 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=57.4
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
...|.+++|++|+|+|+||+.|+|+|.|||+|||++|++|+|+... .+.+.+|.++|||++|+
T Consensus 6 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~ 68 (75)
T 4emk_B 6 NEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG--------KKTNVYGDAFIRGNNVL 68 (75)
T ss_dssp HHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETT--------EEEEEEEEEEEEGGGSS
T ss_pred HHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecC--------CcccEecEEEEcCCeEE
Confidence 4558999999999999999999999999999999999999998743 35789999999999986
No 9
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1e-20 Score=127.85 Aligned_cols=74 Identities=31% Similarity=0.399 Sum_probs=58.0
Q ss_pred CChhhH-HhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCC-----ccccceEeeeeEEEeCCceec
Q 033737 38 ETVLDL-AKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPL-----KTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 38 ~~~~~L-~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~-----~~~~~~r~lGlvvIRGd~iv~ 111 (112)
..|.+| ..++|++|+|+|+|||.|.|+|.|||+||||+|++|+|++...+++. ..+.+.|.+|+++|||++|+.
T Consensus 8 ~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~ 87 (93)
T 4emg_A 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVIL 87 (93)
T ss_dssp -CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEE
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEE
Confidence 446675 55599999999999999999999999999999999999987533211 122468999999999999973
No 10
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.84 E-value=1.5e-20 Score=127.64 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=57.9
Q ss_pred hhh-HHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 40 VLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~-L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
|.+ |.++++++|+|+|+|||+|+|+|.|||+||||+|+||+|+.... .+.+.+|.++|||++|+.
T Consensus 21 Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~-------~~~~~lg~v~IRG~nI~~ 86 (94)
T 4emk_A 21 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT-------GVTEKHSEMLLNGNGMCM 86 (94)
T ss_dssp HHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTT-------CCEEEEEEEEECSTTEEE
T ss_pred CHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCC-------CcEeEcCEEEEcCCEEEE
Confidence 444 78999999999999999999999999999999999999998321 358899999999999973
No 11
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.83 E-value=1.1e-20 Score=125.88 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=58.8
Q ss_pred cCCCCCChh-hHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 33 MSGRKETVL-DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 33 ms~~~~~~~-~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
||. |..|. .|.+++|++|+|+|+||+.|+|+|.|||+|||++|++|.|+... ...+.+|.++|||++|+
T Consensus 1 ms~-~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g--------~~~~~lg~v~IRG~nI~ 70 (86)
T 3s6n_F 1 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDG--------ALSGHLGEVLIRCNNVL 70 (86)
T ss_dssp --C-CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEESSEEECGGGEE
T ss_pred CCc-CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCC--------ceeeEccEEEEeCCeEE
Confidence 554 34444 48999999999999999999999999999999999999998642 25789999999999997
No 12
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.83 E-value=2.2e-20 Score=123.33 Aligned_cols=64 Identities=34% Similarity=0.468 Sum_probs=58.7
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
...|.+++|++|+|+|+||+.|.|+|.|||+|||++|+||+|++.+ ...+.+|.++|||++|+.
T Consensus 17 ~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~IRG~~I~~ 80 (83)
T 1mgq_A 17 LDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG--------EVTRRLGTVLIRGDNIVY 80 (83)
T ss_dssp THHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEE
T ss_pred HHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC--------CcccCCCEEEECCCEEEE
Confidence 4568999999999999999999999999999999999999999853 368999999999999873
No 13
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.83 E-value=1.2e-20 Score=132.14 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=55.2
Q ss_pred cccccccccccccccccCCCCCChhhHHhhc--CCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCC----
Q 033737 17 RSARVSFNLGFLKSLKMSGRKETVLDLAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPL---- 90 (112)
Q Consensus 17 ~~~~~~~~~~~~~~~~ms~~~~~~~~L~~~i--~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~---- 90 (112)
||+++..+....+..++...| ...|.+++ +++|+|+|+|||.|.|+|.|||+||||+|+||+|++...+++.
T Consensus 8 ~~~~~~~~~~~~e~~~~~~~P--l~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~ 85 (118)
T 1b34_B 8 KSEMTPEELQKREEEEFNTGP--LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 85 (118)
T ss_dssp ------------------CCH--HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC------------
T ss_pred hhhcChhhhhhhhhhhcccCh--HHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccc
Confidence 577776666667777776543 33467888 5999999999999999999999999999999999986532210
Q ss_pred --ccccceEeeeeEEEeCCceec
Q 033737 91 --KTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 91 --~~~~~~r~lGlvvIRGd~iv~ 111 (112)
......|.+|.++|||++|+.
T Consensus 86 ~~~~~~~~r~lg~v~IRG~nVv~ 108 (118)
T 1b34_B 86 KSKPVNKDRYISKMFLRGDSVIV 108 (118)
T ss_dssp -------CEEEEEEEECGGGEEE
T ss_pred cccccccccCcCeEEEcCCEEEE
Confidence 011246789999999999973
No 14
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.82 E-value=2.4e-20 Score=122.50 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=57.1
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
...|.++++++|+|+|+|||.|.|+|.|||+|||++|+||.|+ .. ...+.+|.++|||++|+.
T Consensus 13 ~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~--------~~~~~lg~v~iRG~~I~~ 75 (81)
T 1i8f_A 13 GATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-ID--------GNVYKRGTMVVRGENVLF 75 (81)
T ss_dssp HHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ET--------TEEEEEEEEEECGGGEEE
T ss_pred HHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cC--------CcccCCCEEEECCCEEEE
Confidence 4458999999999999999999999999999999999999999 32 368999999999999973
No 15
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.82 E-value=3e-20 Score=120.79 Aligned_cols=63 Identities=30% Similarity=0.428 Sum_probs=58.2
Q ss_pred hhhHHhhcCCeEEEEEcCC-eEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 40 VLDLAKFVDKGVQVKLTGG-RQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dg-r~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
...|.++++++|+|+|+|| ++++|+|.|||+|||++|++|+|+... ...+.+|.++|||++|+
T Consensus 7 ~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~nI~ 70 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE--------EKVRSLGEIVLRGNNVV 70 (77)
T ss_dssp HHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEE
T ss_pred HHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC--------CcEeECCeEEEeCCeEE
Confidence 5568999999999999999 999999999999999999999999852 36889999999999987
No 16
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.82 E-value=2.7e-20 Score=143.72 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=61.7
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCC--CccccceEeeeeEEEeCCceec
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDP--LKTTDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~--~~~~~~~r~lGlvvIRGd~iv~ 111 (112)
..+|.+|+||+|+|+|+|||+|+|+|+|||+||||||+||+|++..+.++ ..+.+++|.+|+++||||+||.
T Consensus 6 ~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~ 79 (231)
T 3pgw_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (231)
T ss_pred hHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEE
Confidence 56799999999999999999999999999999999999999998532221 2233578999999999999984
No 17
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.80 E-value=6.4e-20 Score=123.99 Aligned_cols=72 Identities=21% Similarity=0.370 Sum_probs=59.7
Q ss_pred cCCCCCChhh-HHhhcCCeEEEEE----cCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCC
Q 033737 33 MSGRKETVLD-LAKFVDKGVQVKL----TGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCD 107 (112)
Q Consensus 33 ms~~~~~~~~-L~~~i~k~V~V~L----~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd 107 (112)
|.+-+..|.+ |.++++++++|++ +|||+|+|+|.|||+||||+|+||+|+..+. ++.+.+|+++|||+
T Consensus 10 ~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~-------~~~~~lg~v~iRG~ 82 (92)
T 3s6n_E 10 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT-------KSRKQLGRIMLKGD 82 (92)
T ss_dssp ----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSS-------CCEEEEEEEEECGG
T ss_pred cceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCC-------CceeEcCeEEEeCC
Confidence 3333445666 6899999999999 9999999999999999999999999997532 35789999999999
Q ss_pred ceec
Q 033737 108 ACVT 111 (112)
Q Consensus 108 ~iv~ 111 (112)
+|+.
T Consensus 83 nV~~ 86 (92)
T 3s6n_E 83 NITL 86 (92)
T ss_dssp GEEE
T ss_pred EEEE
Confidence 9973
No 18
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.80 E-value=1e-19 Score=123.01 Aligned_cols=63 Identities=33% Similarity=0.363 Sum_probs=55.8
Q ss_pred hhhHHhhcCCeEEEEEcCC-eEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 40 VLDLAKFVDKGVQVKLTGG-RQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dg-r~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
...|.+++|++|+|+|+|| ++|+|+|.|||+||||+|++|+|+..+ .+.+.+|.++|||++|+
T Consensus 23 ~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~--------~~~~~lg~v~IRG~nI~ 86 (93)
T 1n9r_A 23 KPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG--------VSHGTLGEIFIRCNNVL 86 (93)
T ss_dssp ---CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT--------EEEEECCSEEECGGGEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC--------CeEeEcCEEEEcCCeEE
Confidence 3458999999999999999 999999999999999999999999742 35789999999999987
No 19
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.79 E-value=6.8e-20 Score=128.84 Aligned_cols=72 Identities=25% Similarity=0.390 Sum_probs=57.3
Q ss_pred hhh-HHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCC--CCCcc-----ccceEeeeeEEEeCCceec
Q 033737 40 VLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD--DPLKT-----TDQTRQLGLIGNCCDACVT 111 (112)
Q Consensus 40 ~~~-L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~--~~~~~-----~~~~r~lGlvvIRGd~iv~ 111 (112)
|.+ |.++++++|+|.|+|||.|+|+|.|||+||||+|+||+|++.+.+ +.... +...+.+|+++|||++|+.
T Consensus 29 Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~ 108 (121)
T 2fwk_A 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAM 108 (121)
T ss_dssp HHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEE
T ss_pred cHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEE
Confidence 444 689999999999999999999999999999999999999986411 10000 1127899999999999973
No 20
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.77 E-value=1.4e-18 Score=112.96 Aligned_cols=62 Identities=16% Similarity=0.043 Sum_probs=56.2
Q ss_pred hhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 41 ~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
..|++++|++|+|+|++|++|+|+|.|||+|||++|++|+|+..+ .+.+.+|.++|||++|.
T Consensus 8 ~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~--------~~~~~lg~v~IRG~nI~ 69 (75)
T 1d3b_A 8 KVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD--------GRVAQLEQVYIRGCKIR 69 (75)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT--------SCEEEEEEEEECGGGEE
T ss_pred HHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC--------CcEEEcCeEEEeCCEEE
Confidence 347899999999999999999999999999999999999998643 24789999999999986
No 21
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.77 E-value=9.8e-19 Score=120.78 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=51.2
Q ss_pred hHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 42 ~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
.|.+++|++|+|+|+||++|+|+|.|||+||||+|++|+|+..+. +..+.+|.++|||++|+
T Consensus 20 lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg-------~~~~~lg~v~IRG~nI~ 81 (105)
T 4emh_A 20 LLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDG-------DKFFRLPECYIRGNNIK 81 (105)
T ss_dssp ------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS-------CEEEEEEEEEECGGGEE
T ss_pred HHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCC-------ceeeEcCeEEEeCCeEE
Confidence 378999999999999999999999999999999999999986432 25789999999999986
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.74 E-value=4.8e-18 Score=119.15 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=57.1
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
...|.++++++|+|+|+||++|+|+|.+||+||||+|+||+|+..+ .+.+.+|.++|||++|+
T Consensus 4 ~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~--------~~~~~lg~v~IRG~nI~ 66 (119)
T 1b34_A 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN--------REPVQLETLSIRGNNIR 66 (119)
T ss_dssp HHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT--------SCCEEEEEEEECGGGEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC--------CceeEcceEEEcCCeEE
Confidence 4568999999999999999999999999999999999999998643 24689999999999996
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.67 E-value=6.7e-17 Score=115.28 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=53.5
Q ss_pred hhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 41 ~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
..|.+++|++|+|+|+||+.|.|+|.|||+||||+|+||.|+. .+.+|.++|||++|+
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------------~~~lg~v~IRG~nI~ 60 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------------GEKFNRVFIMYRYIV 60 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------------CCEEEEEEECGGGEE
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------------CCEeceEEEeCCeEE
Confidence 5689999999999999999999999999999999999999962 257899999999986
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.66 E-value=2.3e-16 Score=111.95 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred hhhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
...|.++++++|+|+|++|++|.|+|.+||+|||++|+||+|+..+. +...+|.++|||++|+
T Consensus 7 ~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g--------~~~~l~~v~IRGnnI~ 69 (126)
T 2y9a_D 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG--------RVAQLEQVYIRGSKIR 69 (126)
T ss_dssp HHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTS--------CCEEEEEEEECGGGEE
T ss_pred HHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCC--------cEeecccEEEeCCEEE
Confidence 45589999999999999999999999999999999999999986431 4688999999999986
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.74 E-value=3e-08 Score=66.23 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=48.8
Q ss_pred CChhhHHhhcCCeEEEEEcCCeEEEEEEEeec-CccceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 38 ETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYD-QLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 38 ~~~~~L~~~i~k~V~V~L~dgr~i~G~L~~fD-~~mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
.+|.++++|+||+|.|+|.||++|.|.|.+|| .-.|++|.++ ..+ .....++|.|..|.
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~~----------~~~~~~iI~G~aI~ 66 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LED----------GSMSVTGIMGHAVQ 66 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CTT----------SCEEEEEECGGGEE
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----ccC----------CeEEEEEEecceEE
Confidence 46889999999999999999999999999999 7899999998 111 11356778787664
No 26
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.82 E-value=0.0022 Score=41.83 Aligned_cols=46 Identities=30% Similarity=0.381 Sum_probs=31.7
Q ss_pred cCCCCCChhh--HHhhc--CCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 33 MSGRKETVLD--LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 33 ms~~~~~~~~--L~~~i--~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
|+.+.....+ |+.+. +.+|+|.|.+|-.++|.+.+||+|+=++-.+
T Consensus 4 ~~~~~~nlQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 4 GSMKPINIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp ------CHHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred ccccccChHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 4444455444 55554 6799999999999999999999998666543
No 27
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.56 E-value=0.0025 Score=41.65 Aligned_cols=43 Identities=26% Similarity=0.454 Sum_probs=29.9
Q ss_pred cCCCCCChhh--HHhhcC--CeEEEEEcCCeEEEEEEEeecCcccee
Q 033737 33 MSGRKETVLD--LAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLV 75 (112)
Q Consensus 33 ms~~~~~~~~--L~~~i~--k~V~V~L~dgr~i~G~L~~fD~~mNlv 75 (112)
|++++....+ |+.+.. .+|.|.|.+|-.++|.+.+||+|+=++
T Consensus 1 m~~~~~nlQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp -----CTTHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred CCccccchHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 4444444444 666644 479999999999999999999998655
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.54 E-value=0.0032 Score=40.60 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=29.8
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEeecCccceeec
Q 033737 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77 (112)
Q Consensus 43 L~~~i--~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~ 77 (112)
|+.+. ..+|+|.|.+|-.++|.+.+||+|+=++-+
T Consensus 14 L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~ 50 (74)
T 2ylb_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKN 50 (74)
T ss_dssp HHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEEC
Confidence 66665 679999999999999999999999866543
No 29
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.20 E-value=0.011 Score=38.42 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=30.2
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 43 L~~~i--~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
|+.+. ..+|.|.|.+|-.++|.+.+||+|+=++-.+
T Consensus 12 Ln~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 12 LENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 56665 6799999999999999999999998666543
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.17 E-value=0.0079 Score=39.55 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=28.4
Q ss_pred HHhhc--CCeEEEEEcCCeEEEEEEEeecCccceee
Q 033737 43 LAKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76 (112)
Q Consensus 43 L~~~i--~k~V~V~L~dgr~i~G~L~~fD~~mNlvL 76 (112)
|+.+. ..+|+|.|.+|-.++|.+.+||+|+=++-
T Consensus 12 Ln~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 12 LNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 55443 66999999999999999999999986554
No 31
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.85 E-value=0.015 Score=37.30 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.8
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
-+.+|+|.|.+|-.++|.+.|||+|+=++-.+
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 45689999999999999999999998766544
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.61 E-value=0.014 Score=39.85 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=29.4
Q ss_pred HHhhcCC--eEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 43 LAKFVDK--GVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 43 L~~~i~k--~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
|+.+..+ +|.|.|.+|-.++|++.+||+|+=++-++
T Consensus 14 Ln~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC
Confidence 6666544 89999999999999999999998665543
No 33
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=95.12 E-value=0.16 Score=33.63 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=48.6
Q ss_pred HhhcCCeEEEEEcCCeEEEEEEEeecCc-cceeecceEEEeecCCCC-CccccceEeeeeEEEeCCce
Q 033737 44 AKFVDKGVQVKLTGGRQVTGTLKGYDQL-LNLVLDEAVEFLRDADDP-LKTTDQTRQLGLIGNCCDAC 109 (112)
Q Consensus 44 ~~~i~k~V~V~L~dgr~i~G~L~~fD~~-mNlvL~~a~E~~~~~~~~-~~~~~~~r~lGlvvIRGd~i 109 (112)
..|+|+++.+..+.+-+|+|+|...|.. .-+.|.++.-+-...... .+.-....-+..++.||..|
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDI 76 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDI 76 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTE
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCc
Confidence 3589999999999999999999999955 688999987775432211 11112334568899999876
No 34
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=94.77 E-value=0.037 Score=38.95 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=31.2
Q ss_pred hHHhhcCCeEEEEEcCCeEEEEEEEeecCccceee--cce
Q 033737 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL--DEA 79 (112)
Q Consensus 42 ~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL--~~a 79 (112)
...+|+|+.|.|+|+||..++|++..+|.- +|.| .+|
T Consensus 6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a 44 (125)
T 4a53_A 6 SVADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLA 44 (125)
T ss_dssp CHHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEET
T ss_pred cHHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccc
Confidence 467899999999999999999999999843 4555 665
No 35
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=93.78 E-value=0.15 Score=34.23 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=46.9
Q ss_pred hHHhhcCCeEEEEEcCCeEEEEEEEeecCc-cceeecceEEEeecCCC-CCccccceEeeeeEEEeCCce
Q 033737 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQL-LNLVLDEAVEFLRDADD-PLKTTDQTRQLGLIGNCCDAC 109 (112)
Q Consensus 42 ~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~-mNlvL~~a~E~~~~~~~-~~~~~~~~r~lGlvvIRGd~i 109 (112)
.-..|+|+++.+..+.+-+|+|+|...|.. .-+.|.++.-+-..... +.+.-....-+..++.||..|
T Consensus 13 ~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDI 82 (95)
T 2fb7_A 13 GGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDI 82 (95)
T ss_dssp ---CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTE
T ss_pred ccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCc
Confidence 346799999999999999999999999954 67888887665433211 111112333467888999876
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=92.40 E-value=0.19 Score=31.76 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=34.0
Q ss_pred hhHHhhcCCeEEEEEcCCeEEEEEEEeecCccceeecceEEEeec
Q 033737 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRD 85 (112)
Q Consensus 41 ~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~E~~~~ 85 (112)
..|.++.|+||-+.......|+|+|.-||.-. +.|.|+..+.-.
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GN 52 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGN 52 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcc
Confidence 34899999999999999999999999999874 678888877543
No 37
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=91.43 E-value=0.29 Score=35.15 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=27.6
Q ss_pred hhhHHhhcCCeEEEEE----cCCeEEEEEEEeecCc
Q 033737 40 VLDLAKFVDKGVQVKL----TGGRQVTGTLKGYDQL 71 (112)
Q Consensus 40 ~~~L~~~i~k~V~V~L----~dgr~i~G~L~~fD~~ 71 (112)
+.++.+++|+.|.|++ .+.+.++|+|.++|.-
T Consensus 96 ~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 96 KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 5568899999999999 4559999999999865
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=91.04 E-value=0.39 Score=31.58 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=33.6
Q ss_pred hhcCCeEEEEEcCCe-EEEEEEEeecCc-cceeecceE
Q 033737 45 KFVDKGVQVKLTGGR-QVTGTLKGYDQL-LNLVLDEAV 80 (112)
Q Consensus 45 ~~i~k~V~V~L~dgr-~i~G~L~~fD~~-mNlvL~~a~ 80 (112)
+|+|+.|.+...++- .|+|.+..+|.. .+|.|.++.
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 699999999999998 999999999987 689999994
No 39
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=90.13 E-value=0.37 Score=36.88 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=30.5
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCccceeecceE
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~ 80 (112)
+|++|++.+.+|..+.|+..|+|....|+|+...
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~~ 256 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGG 256 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEETT
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEECC
Confidence 6899999988899999999999999999997543
No 40
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=89.64 E-value=0.55 Score=29.79 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCCCChhhHHhhcC--CeEEEEEcCCeEEEEEEEeecCccceeec
Q 033737 35 GRKETVLDLAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVLD 77 (112)
Q Consensus 35 ~~~~~~~~L~~~i~--k~V~V~L~dgr~i~G~L~~fD~~mNlvL~ 77 (112)
.+-.+...|++|+- ..|.|+|.+|..++|.+.-+|++.=++-+
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~ 50 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVD 50 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEc
Confidence 33344566888864 58999999999999999999998766554
No 41
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=88.26 E-value=0.75 Score=29.29 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=32.5
Q ss_pred CChhhHHhhcC--CeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 38 ETVLDLAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 38 ~~~~~L~~~i~--k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
.+...|++|+. ..|.|+|.+|..++|++.-+|.+.=++.++
T Consensus 11 PsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~ 53 (72)
T 3hfn_A 11 PSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADE 53 (72)
T ss_dssp HHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC-
T ss_pred CcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcC
Confidence 34566888876 488999999999999999999987555543
No 42
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=82.48 E-value=3.3 Score=26.14 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=29.3
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCcccee-ecceEEEeec
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLV-LDEAVEFLRD 85 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~mNlv-L~~a~E~~~~ 85 (112)
+|..|.++-+||+.|-|+++...+.-=+| .+|-.|.+..
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 88999999999999999997766554333 3566666654
No 43
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=82.44 E-value=2.7 Score=27.54 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=42.2
Q ss_pred hhHHhhcCCeEEEEEcCCeEEEEEEEeecCc-cceeecceEEEeecCCCCCccccceEeeeeEEEeCCcee
Q 033737 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQL-LNLVLDEAVEFLRDADDPLKTTDQTRQLGLIGNCCDACV 110 (112)
Q Consensus 41 ~~L~~~i~k~V~V~L~dgr~i~G~L~~fD~~-mNlvL~~a~E~~~~~~~~~~~~~~~r~lGlvvIRGd~iv 110 (112)
..|....|++|.+.|.++.+..|++.|+|.. .|+..++-.- .-..+...++|+..|+
T Consensus 22 r~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~T-------------PiGv~~eAlLR~~Dii 79 (85)
T 1y96_B 22 RSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQT-------------PIGVQAEALLRCSDII 79 (85)
T ss_dssp HHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECC-------------TTCCEEEEEEEGGGEE
T ss_pred HHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCC-------------CcccchhhhhhcCCEE
Confidence 3456778999999999999999999999955 6777665221 1123567788887664
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=81.66 E-value=1.1 Score=33.42 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.6
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
+|++|++...++ +.|+..|+|....|+++..
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEEC
Confidence 789999976554 9999999999999999753
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=81.52 E-value=3.2 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=28.4
Q ss_pred hcCCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 46 ~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
++|++|++...++..+.|+..|+|....|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 379999999888877999999999999998 64
No 46
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=80.88 E-value=3 Score=32.14 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=28.2
Q ss_pred hcCCeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 46 ~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
++|++|++... +..+.|+..|+|....|+++..
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC
Confidence 37899999865 5689999999999999999753
No 47
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=73.46 E-value=2.6 Score=31.40 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
+|++|++...++ +.|+..|+|....|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 699999987776 999999999999999975
No 48
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=70.83 E-value=5.6 Score=29.28 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.6
Q ss_pred hcCCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 46 ~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
++|++|++ +| +.|+..|+|....|+++.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 37899999 45 999999999999999975
No 49
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=69.96 E-value=5 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=26.8
Q ss_pred hcCCeEEEEEcCCeEEEEEEEeecCccceeecc
Q 033737 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 46 ~i~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
++|++|++... +..+.|+..|+|....|+|+.
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 37899999764 567999999999999999964
No 50
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=65.32 E-value=15 Score=24.73 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred HhhcCCeEEEEEcCCe-EEEEEEEeecCccceeecceEEE
Q 033737 44 AKFVDKGVQVKLTGGR-QVTGTLKGYDQLLNLVLDEAVEF 82 (112)
Q Consensus 44 ~~~i~k~V~V~L~dgr-~i~G~L~~fD~~mNlvL~~a~E~ 82 (112)
.+|+|+-|.|.-.+.- .|+|.+...|+ -+|.|.+|..-
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrN 46 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRN 46 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEET
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhc
Confidence 5899999999999886 99999999996 44999887653
No 51
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=57.30 E-value=11 Score=25.19 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=17.9
Q ss_pred hhcC--CeEEEEEcCCeEEEEEEE
Q 033737 45 KFVD--KGVQVKLTGGRQVTGTLK 66 (112)
Q Consensus 45 ~~i~--k~V~V~L~dgr~i~G~L~ 66 (112)
..++ .+|++.|.||+.+.|++-
T Consensus 23 ~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 23 KLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HTSCTTCEEEEEETTSCEEEEEES
T ss_pred HhhCCeeEEEEEEcCCCeEeeeec
Confidence 3444 499999999999999963
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.81 E-value=20 Score=21.77 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCcc---ceeecceEEEee
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLL---NLVLDEAVEFLR 84 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~m---NlvL~~a~E~~~ 84 (112)
.|..|.+.-+||+.|-|++..+|+.. =+..+|-.+.+.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 46789999999999999999998763 233344444443
No 53
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=45.02 E-value=15 Score=24.13 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.3
Q ss_pred hhHHhhcCCeEEEEEcCCeE----EEEEEEee
Q 033737 41 LDLAKFVDKGVQVKLTGGRQ----VTGTLKGY 68 (112)
Q Consensus 41 ~~L~~~i~k~V~V~L~dgr~----i~G~L~~f 68 (112)
.+|..++|++|.++.+.||. -+|+|...
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 35889999999999999974 67888765
No 54
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=44.46 E-value=28 Score=27.97 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.1
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.+.|...+|.|=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3789999999999999999999988876554
No 55
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=43.87 E-value=30 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.+.|...+|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4799999999999999999999988876554
No 56
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=42.45 E-value=26 Score=23.95 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.2
Q ss_pred cCCeEEEEEcCCeEEEEEEEeec
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYD 69 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD 69 (112)
+|.+|..+-++||.|.|++.+..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 78999999999999999998864
No 57
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=41.86 E-value=35 Score=21.14 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=28.9
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCc-c--ceeecceEEEee
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQL-L--NLVLDEAVEFLR 84 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~-m--NlvL~~a~E~~~ 84 (112)
.|..|+..-.||+.|.|++..+|+. . =+...|..+++.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 6889999999999999999999975 2 233355555554
No 58
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=40.95 E-value=15 Score=23.58 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.1
Q ss_pred cCCeEEEEEcCCeEEEEEEEeecCcc---ceeecceEEEee
Q 033737 47 VDKGVQVKLTGGRQVTGTLKGYDQLL---NLVLDEAVEFLR 84 (112)
Q Consensus 47 i~k~V~V~L~dgr~i~G~L~~fD~~m---NlvL~~a~E~~~ 84 (112)
.|.-|.++-+||+.|-|+++-+|... =+..+|-.+.+.
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 78999999999999999999998653 233455555544
No 59
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.00 E-value=2.4 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.3
Q ss_pred EEEEEeecCccceeecceEE
Q 033737 62 TGTLKGYDQLLNLVLDEAVE 81 (112)
Q Consensus 62 ~G~L~~fD~~mNlvL~~a~E 81 (112)
-|++.+||+-.|+.|++|..
T Consensus 34 ~~~~~~FDk~TNl~LEeA~~ 53 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAWK 53 (99)
T ss_dssp SSCEEECCTTHHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHHH
Confidence 45689999999999999873
No 60
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=35.02 E-value=43 Score=25.85 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.5
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.+.|....|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3789999999999999999999888766544
No 61
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=33.60 E-value=45 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=25.9
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.+.|....|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4789999999999999999999887766544
No 62
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=31.75 E-value=11 Score=28.46 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=36.3
Q ss_pred eEEEEEEeccc-ccccccccccccccCCCCCChhhH-HhhcCCeEEEEE--cCCeEEEEEEEeecC
Q 033737 9 AVSFFIVCRSA-RVSFNLGFLKSLKMSGRKETVLDL-AKFVDKGVQVKL--TGGRQVTGTLKGYDQ 70 (112)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~~~~~~~ms~~~~~~~~L-~~~i~k~V~V~L--~dgr~i~G~L~~fD~ 70 (112)
-+||||+.||. |-=--.+...+.+..++=.-|+++ .++.++|+.|.. +||...-.++.+.+.
T Consensus 3 iy~~yi~~~~~~liy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ng 68 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAING 68 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC----CEEEEECSSCSSEEEECSSSEEEEECCCTTCCTTCEEEEETT
T ss_pred EEEEEEEecCCceEEecccCCCCcceeeeccCCcceeeeeccceeEEeecccCCccccceeeecCC
Confidence 47999999996 322222222333333332335565 357889998854 788777777777654
No 63
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=31.73 E-value=40 Score=27.08 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.1
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.+.|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4789999999999999999999988876554
No 64
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=30.75 E-value=24 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.2
Q ss_pred hhHHhhcCCeEEEEEcCCeEEEEEE
Q 033737 41 LDLAKFVDKGVQVKLTGGRQVTGTL 65 (112)
Q Consensus 41 ~~L~~~i~k~V~V~L~dgr~i~G~L 65 (112)
.++.=..+.+++++|+||..++|+.
T Consensus 18 LElAc~~~~~l~l~l~dGe~~~g~a 42 (86)
T 1sg5_A 18 LELACQHHLMLTLELKDGEKLQAKA 42 (86)
T ss_dssp HHHHHTTTTCEEEECTTTCCEEESS
T ss_pred HHHHHHcCCeEEEEEeCCCEEEEEE
Confidence 4455567899999999999998854
No 65
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=28.42 E-value=75 Score=22.68 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=26.2
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.+|+.+.+++.++|....|-|=..
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999887766443
No 66
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=27.78 E-value=39 Score=20.64 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=19.1
Q ss_pred CeEEEEEcCCeEEEEEEEeecCc
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQL 71 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~ 71 (112)
.+|.|++.||..+++++..-|.-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl 30 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKL 30 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBH
T ss_pred EEEEEECCCCCEEEEEeCCCCCH
Confidence 37889999999999999876643
No 67
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=27.67 E-value=65 Score=24.14 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 48 ~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
..++.|.+.||+.+.+++.++|...+|-|=..
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 45899999999999999999999888776544
No 68
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=27.58 E-value=74 Score=23.84 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=26.2
Q ss_pred eEEEEEcCCeEEEEEEEeecCccceeecceE
Q 033737 50 GVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (112)
Q Consensus 50 ~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a~ 80 (112)
.+.|.+.+|+.+.+++.++|...+|-|=...
T Consensus 67 ~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~ 97 (318)
T 1te0_A 67 QIIVALQDGRVFEALLVGSDSLTDLAVLIIK 97 (318)
T ss_dssp EEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred EEEEEeCCCCEEEEEEEEeCCCceEEEEEEe
Confidence 5889999999999999999998887765443
No 69
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=27.37 E-value=80 Score=22.58 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 48 ~k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
...+.|.+.+|+.+.+++.++|....|-|=..
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 35789999999999999999999877766544
No 70
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=27.03 E-value=45 Score=25.41 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.8
Q ss_pred CeEEEEEEEeecCccceeecc
Q 033737 58 GRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 58 gr~i~G~L~~fD~~mNlvL~~ 78 (112)
+..+.|.+.-+|.|.|++.+=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456899999999999998764
No 71
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=26.87 E-value=77 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=26.0
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.++|....|-|=..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 3688999999999999999998877766544
No 72
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=26.07 E-value=48 Score=25.30 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=17.8
Q ss_pred CeEEEEEEEeecCccceeecc
Q 033737 58 GRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 58 gr~i~G~L~~fD~~mNlvL~~ 78 (112)
+..+.|.+.-+|.|.|++.+=
T Consensus 167 ~~~i~g~V~~iD~FGN~iTnI 187 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTNI 187 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456899999999999998654
No 73
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=25.20 E-value=50 Score=24.23 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=18.6
Q ss_pred hcCCeEEEEEcCCeEEEEEEEe
Q 033737 46 FVDKGVQVKLTGGRQVTGTLKG 67 (112)
Q Consensus 46 ~i~k~V~V~L~dgr~i~G~L~~ 67 (112)
.+|..|+|++..|+.+.|+..+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 4788899999889999998765
No 74
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=21.61 E-value=79 Score=26.42 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=25.1
Q ss_pred CeEEEEEc-CCeEEEEEEEeecCccceeecc
Q 033737 49 KGVQVKLT-GGRQVTGTLKGYDQLLNLVLDE 78 (112)
Q Consensus 49 k~V~V~L~-dgr~i~G~L~~fD~~mNlvL~~ 78 (112)
..+.|++. ||+.+.+++++.|....|-|=.
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 46888885 9999999999999988876643
No 75
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=21.59 E-value=1e+02 Score=23.49 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=26.3
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
.++.|.+.||+.+.+++.++|....|-|=..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 4789999999999999999999887766544
No 76
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=20.28 E-value=1.5e+02 Score=22.29 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.1
Q ss_pred CeEEEEEcCCeEEEEEEEeecCccceeecce
Q 033737 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (112)
Q Consensus 49 k~V~V~L~dgr~i~G~L~~fD~~mNlvL~~a 79 (112)
..+.|.+.+|+.+.+++.++|....|-|=..
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 4688999999999999999999887766443
Done!