BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033738
MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS
TPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF

High Scoring Gene Products

Symbol, full name Information P value
AT2G18900 protein from Arabidopsis thaliana 2.8e-31
AT3G26480 protein from Arabidopsis thaliana 7.4e-22
wdr75
WD repeat domain 75
gene_product from Danio rerio 1.6e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033738
        (112 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2044480 - symbol:AT2G18900 "AT2G18900" species...   353  2.8e-31   1
TAIR|locus:2079266 - symbol:AT3G26480 "AT3G26480" species...   265  7.4e-22   1
ZFIN|ZDB-GENE-030616-5 - symbol:wdr75 "WD repeat domain 7...   113  1.6e-05   1


>TAIR|locus:2044480 [details] [associations]
            symbol:AT2G18900 "AT2G18900" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006606 "protein import into
            nucleus" evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
            InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
            SMART:SM00320 EMBL:CP002685 Gene3D:2.130.10.10 SUPFAM:SSF50978
            KO:K14552 IPI:IPI00523231 RefSeq:NP_179480.2 UniGene:At.27854
            ProteinModelPortal:F4IRI1 SMR:F4IRI1 PRIDE:F4IRI1
            EnsemblPlants:AT2G18900.1 GeneID:816406 KEGG:ath:AT2G18900
            OMA:ELNLKLW Uniprot:F4IRI1
        Length = 804

 Score = 353 (129.3 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 67/103 (65%), Positives = 77/103 (74%)

Query:     1 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHXXXXXXXXXXXXX 60
             M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH             
Sbjct:     1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60

Query:    61 XXXXKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
                 KIL YCWTASLD TI++WDFS PELLKTID + PI+SMV
Sbjct:    61 SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMV 103


>TAIR|locus:2079266 [details] [associations]
            symbol:AT3G26480 "AT3G26480" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR017986
            InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
            PROSITE:PS50294 SMART:SM00320 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
            PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319 EMBL:AP001298
            KO:K14552 IPI:IPI00532643 RefSeq:NP_189279.1 UniGene:At.53507
            ProteinModelPortal:Q9LIM7 SMR:Q9LIM7 PaxDb:Q9LIM7 PRIDE:Q9LIM7
            EnsemblPlants:AT3G26480.1 GeneID:822253 KEGG:ath:AT3G26480
            TAIR:At3g26480 HOGENOM:HOG000030672 InParanoid:Q9LIM7 OMA:LLCTANT
            PhylomeDB:Q9LIM7 ProtClustDB:CLSN2684859 Genevestigator:Q9LIM7
            Uniprot:Q9LIM7
        Length = 764

 Score = 265 (98.3 bits), Expect = 7.4e-22, P = 7.4e-22
 Identities = 51/103 (49%), Positives = 69/103 (66%)

Query:     1 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHXXXXXXXXXXXXX 60
             MIRGGR+ ++S PAFS D K+LL+CT+NTVS++S +TGL+I+SLE H             
Sbjct:     1 MIRGGRNNITSAPAFSKDAKKLLLCTANTVSVYSVATGLKITSLEDHTAPVTSVIVDPSS 60

Query:    61 XXXXKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMV 103
                 + +SYCWT+SLD  I+ W+FS P+LLK  D   PI S+V
Sbjct:    61 D---ETVSYCWTSSLDGKIRIWEFSAPKLLKIFDTHLPIHSLV 100


>ZFIN|ZDB-GENE-030616-5 [details] [associations]
            symbol:wdr75 "WD repeat domain 75" species:7955
            "Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
            InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
            SMART:SM00320 ZFIN:ZDB-GENE-030616-5 GO:GO:0005730
            Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
            InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR011047
            SUPFAM:SSF50998 EMBL:AL591593 EMBL:AL672145 EMBL:AL672118
            EMBL:AL731861 KO:K14552 EMBL:AL672166 EMBL:BC045446 IPI:IPI00769290
            RefSeq:NP_956384.1 UniGene:Dr.122686 ProteinModelPortal:Q7ZVR1
            STRING:Q7ZVR1 Ensembl:ENSDART00000059667 GeneID:368478
            KEGG:dre:368478 CTD:84128 GeneTree:ENSGT00390000006303
            HOGENOM:HOG000043113 HOVERGEN:HBG061237 InParanoid:Q7ZVR1
            NextBio:20812957 ArrayExpress:Q7ZVR1 Bgee:Q7ZVR1 Uniprot:Q7ZVR1
        Length = 832

 Score = 113 (44.8 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 32/109 (29%), Positives = 56/109 (51%)

Query:     1 MIRGGRSYVS-SPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHXXXXXXXXXXX 58
             ++R G S ++  PP  S+D  R ++C S ++V ++ST T   + +L+GH           
Sbjct:     9 VVRCGGSKINFRPPIISHD-SRFVLCVSGDSVKVYSTRTEEWLHNLQGHNNQVTGIAFNP 67

Query:    59 XXXXXXKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKK 107
                   ++ S C   S D T+K WDF    L+KT  + +P++S+   +K
Sbjct:    68 ANQL--QVYS-C---SADGTVKLWDFIDGILIKTFVIGYPLYSLYVSEK 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112        95   0.00091  102 3  11 22  0.48    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  106 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.67u 0.11s 9.78t   Elapsed:  00:00:01
  Total cpu time:  9.67u 0.11s 9.78t   Elapsed:  00:00:01
  Start:  Fri May 10 02:18:16 2013   End:  Fri May 10 02:18:17 2013

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