STRING 9.05 
  AT2G18900 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT2G18900
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repeat family protein; FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- transducin family protein / WD-40 repeat family protein (TAIR-AT3G26480.1); Has 3365 Blast hits to 22 [...] (804 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
NRPA2
NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; Encodes a subunit of [...] (1178 aa)
       0.692
AT1G15440
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (900 aa)
      0.690
AT3G10530
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (536 aa)
       0.686
APUM24
APUM24 (Arabidopsis Pumilio 24); RNA binding / binding; Arabidopsis Pumilio 24 (APUM24); FUNCTI [...] (641 aa)
       0.675
AT3G06530
binding; binding; FUNCTIONS IN- binding; LOCATED IN- chloroplast, vacuole; EXPRESSED IN- 22 pla [...] (2152 aa)
       0.659
AT4G04940
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (910 aa)
      0.641
AT1G18850
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (399 aa)
       0.629
AT2G40360
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (753 aa)
       0.625
AT4G05410
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (504 aa)
       0.615
AT3G18600
DEAD/DEAH box helicase, putative; DEAD/DEAH box helicase, putative; FUNCTIONS IN- helicase acti [...] (568 aa)
       0.615
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: very high (>100%)
Permalink