BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033738
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 70 CWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111
C +AS+D TI+ WD EL+ T+ + ++R F V
Sbjct: 325 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLV 366
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 15 FSNDVKRLLVCTSN-TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCWTA 73
FS D +R+ C ++ T+ +F TG ++ ++ H + T
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD-------RFIATC 681
Query: 74 SLDETIKYWDFSTPELLKTID 94
S+D+ +K W+ T EL+ T D
Sbjct: 682 SVDKKVKIWNSMTGELVHTYD 702
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 65 KILSYCWTASLDETIKYWDFSTPELLKTIDVK 96
K+L+ C S D T+K WD ++ K+I+VK
Sbjct: 762 KLLASC---SADGTLKLWDATSANERKSINVK 790
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 71 WTASLDETIKYWDFSTPELLKTIDVKFPIFSM 102
WT LD T++ WD L+ D IFS+
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 70 CWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111
C +AS D TI+ WD EL T+ + ++R F V
Sbjct: 325 CISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLV 366
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 11 SPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILS 68
S A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 72 SDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV---- 126
Query: 69 YCWTASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 127 ---SGSFDESVRIWDVKTGKCLKTL 148
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 11 SPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILS 68
S A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 72 SDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV---- 126
Query: 69 YCWTASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 127 ---SGSFDESVRIWDVKTGKCLKTL 148
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 11 SPPAFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILS 68
S A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 72 SDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV---- 126
Query: 69 YCWTASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 127 ---SGSFDESVRIWDVKTGKCLKTL 148
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 89 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 140
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTL 162
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 78 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 129
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTL 151
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 77 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 128
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTL 150
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 75 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 126
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T LKT+
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTL 148
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 78 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 129
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTL 151
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 241
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 71 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 122
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTL 144
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 72 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 123
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTL 145
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 73 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 124
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTL 146
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTID 94
Y +AS D TIK W+ ST E ++T++
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLN 293
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 72 TASLDETIKYWDFSTPELLKTI 93
T S D T++ WD +T E+L T+
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTL 209
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTID-----VKFPIF 100
Y TAS D TIK WD+ T + T++ V F +F
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 29 TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCWTASLDETIKYWDFSTPE 88
T+ I+ T +++LEGH L + S D T+K W+ ST +
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFH-------PTLPIIISGSEDGTLKIWNSSTYK 261
Query: 89 LLKTIDV 95
+ KT++V
Sbjct: 262 VEKTLNV 268
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 72 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 123
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTL 145
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 96 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 147
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTL 169
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 68 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 119
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTL 141
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 78 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 129
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTL 151
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD T+K WD+S + LKT + K+ IF+
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 94 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 145
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T + LKT+
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTL 167
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 72 TASLDETIKYWD---------FSTPELLKTIDVKFPIFSMVRGKKGFAVF 112
T S D+T+K+WD PE DV +P+ + ++G V+
Sbjct: 146 TGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVY 195
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 66 ILSYCW--------TASLDETIKYWDFSTPELLKTIDVKFPI 99
+L CW TAS D+T K WD S+ + ++ P+
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 22 LLVCTSNT-VSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCWTASLDETIK 80
L C+ ++ S++ + G ++ +L+GH YC T S D +IK
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-------FTKYCVTGSADYSIK 99
Query: 81 YWDFSTPELLKTIDVKFPI 99
WD S + + T P+
Sbjct: 100 LWDVSNGQCVATWKSPVPV 118
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 29 TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCWTASLDETIKYWDFSTPE 88
T+ ++ TG +L+GH K+L+ C S D TIK WDF E
Sbjct: 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSG----KLLASC---SADMTIKLWDFQGFE 183
Query: 89 LLKTI 93
++T+
Sbjct: 184 CIRTM 188
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+AS D TIK WD+ T + +T+
Sbjct: 125 SASEDATIKVWDYETGDFERTL 146
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 14 AFSNDVKRLLVCTSN--TVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCW 71
A+S+D LLV S+ T+ I+ S+G + +L+GH
Sbjct: 75 AWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV------- 126
Query: 72 TASLDETIKYWDFSTPELLKTI 93
+ S DE+++ WD T LKT+
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTL 148
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTI----DVKFPIFS 101
Y A+LD +K WD+S + LKT + K+ IF+
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 72 TASLDETIKYWDFSTPELLKTIDV 95
+AS D+TIK W+ +T ++ KTI V
Sbjct: 256 SASADKTIKIWNVATLKVEKTIPV 279
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTID-----VKFPIF 100
Y TAS D TIK WD+ T + T++ V F +F
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTID-----VKFPIF 100
Y TAS D TIK WD+ T + T++ V F +F
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 69 YCWTASLDETIKYWDFSTPELLKTID-----VKFPIF 100
Y TAS D TIK WD+ T + T++ V F +F
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 28 NTVSIFSTSTGLQISSLEGHXXXXXXXXXXXXXXXXXKILSYCWTASLDETIKYWDFSTP 87
+TV I+ TG + +L+G ++ T+S D T+K WD T
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK------NFVITSSDDGTVKLWDLKTG 392
Query: 88 ELLKTI 93
E ++ +
Sbjct: 393 EFIRNL 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,510,872
Number of Sequences: 62578
Number of extensions: 61909
Number of successful extensions: 219
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 85
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)