Query 033738
Match_columns 112
No_of_seqs 176 out of 1653
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 05:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 99.9 3.6E-23 7.8E-28 130.8 9.6 103 1-111 530-634 (707)
2 KOG0271 Notchless-like WD40 re 99.9 3.5E-23 7.7E-28 123.1 8.5 97 2-106 111-210 (480)
3 KOG0271 Notchless-like WD40 re 99.9 5.3E-23 1.1E-27 122.3 8.9 102 2-111 363-466 (480)
4 KOG0272 U4/U6 small nuclear ri 99.9 2E-23 4.4E-28 124.9 6.8 102 2-111 257-360 (459)
5 KOG0266 WD40 repeat-containing 99.9 6E-21 1.3E-25 119.5 13.6 102 2-111 199-303 (456)
6 KOG0266 WD40 repeat-containing 99.9 7.1E-21 1.5E-25 119.1 12.0 104 1-112 241-350 (456)
7 PTZ00421 coronin; Provisional 99.9 1.9E-20 4.1E-25 117.7 13.0 103 2-111 71-183 (493)
8 KOG0286 G-protein beta subunit 99.9 1.7E-20 3.6E-25 108.5 10.7 101 2-111 141-244 (343)
9 KOG0286 G-protein beta subunit 99.9 1.3E-20 2.8E-25 108.9 10.2 103 2-112 182-289 (343)
10 KOG0272 U4/U6 small nuclear ri 99.9 4.2E-21 9E-26 115.1 8.3 102 2-111 299-403 (459)
11 KOG0273 Beta-transducin family 99.8 2.7E-20 5.7E-25 113.1 10.9 108 2-111 355-467 (524)
12 KOG0263 Transcription initiati 99.8 1.9E-20 4.2E-25 118.7 9.6 102 2-111 489-592 (707)
13 KOG0279 G protein beta subunit 99.8 1.2E-19 2.7E-24 104.2 10.5 99 5-111 147-248 (315)
14 KOG0279 G protein beta subunit 99.8 2E-19 4.4E-24 103.3 11.2 98 2-108 59-160 (315)
15 PTZ00420 coronin; Provisional 99.8 5.4E-19 1.2E-23 112.3 14.1 103 2-111 70-182 (568)
16 KOG0284 Polyadenylation factor 99.8 3.8E-20 8.2E-25 110.8 6.5 103 2-112 175-280 (464)
17 PTZ00421 coronin; Provisional 99.8 5E-18 1.1E-22 107.0 13.5 102 2-111 121-226 (493)
18 KOG0291 WD40-repeat-containing 99.8 3.3E-18 7.2E-23 109.0 12.1 101 3-111 347-450 (893)
19 KOG0302 Ribosome Assembly prot 99.8 2.4E-18 5.2E-23 102.5 10.0 100 2-109 253-360 (440)
20 KOG0643 Translation initiation 99.8 9.9E-18 2.2E-22 96.2 11.9 103 1-111 5-108 (327)
21 KOG0319 WD40-repeat-containing 99.8 1.5E-18 3.3E-23 110.0 9.0 103 1-111 500-604 (775)
22 KOG0282 mRNA splicing factor [ 99.8 6.8E-19 1.5E-23 107.1 6.2 102 2-111 210-314 (503)
23 KOG0273 Beta-transducin family 99.8 1E-17 2.2E-22 102.0 11.2 102 2-111 397-508 (524)
24 KOG0285 Pleiotropic regulator 99.8 1.7E-18 3.7E-23 102.8 7.5 103 1-111 146-250 (460)
25 KOG0283 WD40 repeat-containing 99.8 2.3E-18 4.9E-23 110.0 8.5 101 2-111 365-466 (712)
26 KOG0295 WD40 repeat-containing 99.8 5.5E-18 1.2E-22 100.5 9.4 109 2-112 231-350 (406)
27 KOG0645 WD40 repeat protein [G 99.8 2.6E-17 5.6E-22 94.6 11.6 103 1-111 100-210 (312)
28 KOG0316 Conserved WD40 repeat- 99.8 8.1E-18 1.8E-22 95.3 9.2 103 1-111 12-116 (307)
29 KOG0315 G-protein beta subunit 99.8 2.3E-17 5E-22 94.0 10.1 96 2-105 211-309 (311)
30 KOG0318 WD40 repeat stress pro 99.8 3.3E-17 7.1E-22 101.1 11.4 85 2-94 186-274 (603)
31 KOG0265 U5 snRNP-specific prot 99.8 1.2E-17 2.6E-22 97.0 8.7 103 2-111 86-189 (338)
32 KOG0645 WD40 repeat protein [G 99.8 6.2E-17 1.3E-21 93.0 11.4 102 3-112 58-166 (312)
33 KOG0285 Pleiotropic regulator 99.8 2.3E-17 4.9E-22 98.1 9.8 100 2-109 231-332 (460)
34 KOG0295 WD40 repeat-containing 99.7 5.9E-17 1.3E-21 96.2 10.7 102 2-111 273-391 (406)
35 KOG1273 WD40 repeat protein [G 99.7 2.9E-17 6.2E-22 96.3 9.2 93 9-109 26-119 (405)
36 KOG0289 mRNA splicing factor [ 99.7 4.3E-17 9.4E-22 98.7 10.0 95 9-111 350-447 (506)
37 KOG0293 WD40 repeat-containing 99.7 1.6E-17 3.5E-22 100.1 7.7 103 1-111 219-327 (519)
38 KOG0283 WD40 repeat-containing 99.7 1.7E-17 3.7E-22 106.0 8.1 97 4-109 265-422 (712)
39 KOG0319 WD40-repeat-containing 99.7 9.5E-17 2.1E-21 102.1 10.9 100 4-111 461-562 (775)
40 KOG0284 Polyadenylation factor 99.7 7E-18 1.5E-22 101.3 5.3 103 1-111 217-321 (464)
41 KOG0315 G-protein beta subunit 99.7 1.2E-16 2.6E-21 91.1 9.7 101 2-111 79-182 (311)
42 KOG0276 Vesicle coat complex C 99.7 1.2E-17 2.5E-22 105.0 6.0 105 1-111 135-242 (794)
43 cd00200 WD40 WD40 domain, foun 99.7 7.2E-16 1.6E-20 90.0 12.4 102 2-111 5-108 (289)
44 PTZ00420 coronin; Provisional 99.7 9.3E-16 2E-20 97.8 13.6 101 2-111 121-229 (568)
45 KOG0973 Histone transcription 99.7 1.1E-16 2.3E-21 104.8 9.3 103 2-112 125-235 (942)
46 KOG1407 WD40 repeat protein [F 99.7 1.9E-16 4.1E-21 90.8 9.1 102 2-111 185-287 (313)
47 KOG0275 Conserved WD40 repeat- 99.7 1.4E-17 3E-22 98.3 4.5 99 5-111 212-321 (508)
48 KOG0305 Anaphase promoting com 99.7 1.3E-16 2.7E-21 99.3 8.9 103 2-111 297-402 (484)
49 KOG0291 WD40-repeat-containing 99.7 3E-16 6.5E-21 100.3 10.5 102 2-111 388-535 (893)
50 KOG0264 Nucleosome remodeling 99.7 1.7E-16 3.7E-21 95.9 8.8 103 2-111 223-331 (422)
51 KOG0306 WD40-repeat-containing 99.7 1E-16 2.2E-21 102.4 8.3 103 2-112 546-650 (888)
52 KOG0265 U5 snRNP-specific prot 99.7 3.5E-16 7.6E-21 91.0 9.5 94 2-103 43-139 (338)
53 KOG0282 mRNA splicing factor [ 99.7 3.2E-17 7E-22 100.0 5.2 102 2-111 254-357 (503)
54 KOG0296 Angio-associated migra 99.7 1.2E-15 2.7E-20 90.6 11.5 102 2-111 60-163 (399)
55 KOG0264 Nucleosome remodeling 99.7 1.4E-15 2.9E-20 92.1 9.8 103 2-111 268-388 (422)
56 KOG0640 mRNA cleavage stimulat 99.7 2.9E-16 6.2E-21 92.2 6.6 102 2-111 108-231 (430)
57 KOG0296 Angio-associated migra 99.7 2.5E-15 5.3E-20 89.4 10.5 103 2-112 102-206 (399)
58 KOG2394 WD40 protein DMR-N9 [G 99.7 7.5E-16 1.6E-20 95.5 8.7 92 7-106 291-384 (636)
59 KOG0292 Vesicle coat complex C 99.7 1.4E-15 3E-20 99.1 10.2 102 2-111 47-150 (1202)
60 cd00200 WD40 WD40 domain, foun 99.7 8E-15 1.7E-19 85.6 12.5 102 3-112 174-277 (289)
61 KOG0277 Peroxisomal targeting 99.7 1.6E-15 3.4E-20 86.8 9.0 100 2-108 143-246 (311)
62 KOG0303 Actin-binding protein 99.7 1.2E-15 2.5E-20 91.8 8.8 103 2-111 77-188 (472)
63 KOG0275 Conserved WD40 repeat- 99.7 3.5E-17 7.6E-22 96.6 2.3 99 5-111 262-363 (508)
64 KOG0973 Histone transcription 99.7 1.5E-15 3.3E-20 99.6 9.9 101 3-111 66-186 (942)
65 KOG0316 Conserved WD40 repeat- 99.6 3.4E-15 7.5E-20 84.8 9.1 77 2-86 55-132 (307)
66 KOG0310 Conserved WD40 repeat- 99.6 8.6E-15 1.9E-19 89.6 11.4 103 2-111 106-211 (487)
67 KOG0294 WD40 repeat-containing 99.6 4.2E-15 9.2E-20 87.1 9.5 102 2-111 79-183 (362)
68 KOG1539 WD repeat protein [Gen 99.6 5.7E-15 1.2E-19 95.3 10.5 101 3-111 490-632 (910)
69 KOG0277 Peroxisomal targeting 99.6 2.9E-15 6.3E-20 85.8 8.1 101 2-109 100-203 (311)
70 KOG0267 Microtubule severing p 99.6 4.3E-16 9.4E-21 99.2 5.1 102 2-111 66-169 (825)
71 KOG1446 Histone H3 (Lys4) meth 99.6 1.1E-14 2.5E-19 85.0 10.3 101 2-112 96-203 (311)
72 PLN00181 protein SPA1-RELATED; 99.6 3.3E-14 7.1E-19 94.6 13.8 97 7-111 533-633 (793)
73 KOG0293 WD40 repeat-containing 99.6 2.2E-15 4.7E-20 91.2 7.4 102 2-112 265-370 (519)
74 KOG0276 Vesicle coat complex C 99.6 8.8E-15 1.9E-19 92.4 10.0 100 2-108 93-195 (794)
75 KOG0278 Serine/threonine kinas 99.6 3.5E-14 7.6E-19 81.4 11.3 103 2-110 139-281 (334)
76 KOG0647 mRNA export protein (c 99.6 1.2E-14 2.5E-19 84.9 9.4 94 3-103 69-163 (347)
77 KOG0313 Microtubule binding pr 99.6 7.6E-15 1.6E-19 87.8 8.5 101 2-112 256-361 (423)
78 KOG0308 Conserved WD40 repeat- 99.6 1.8E-14 4E-19 91.1 10.5 101 4-112 169-271 (735)
79 KOG1407 WD40 repeat protein [F 99.6 1E-14 2.3E-19 83.8 8.5 103 2-111 16-121 (313)
80 KOG2096 WD40 repeat protein [G 99.6 2.6E-14 5.7E-19 84.3 10.3 106 1-111 81-243 (420)
81 PF08662 eIF2A: Eukaryotic tra 99.6 6.3E-14 1.4E-18 79.3 11.6 94 7-112 60-159 (194)
82 KOG0270 WD40 repeat-containing 99.6 9.4E-15 2E-19 88.7 8.4 101 3-110 240-343 (463)
83 KOG0292 Vesicle coat complex C 99.6 5.2E-15 1.1E-19 96.5 7.3 101 3-111 6-108 (1202)
84 PLN00181 protein SPA1-RELATED; 99.6 6.6E-14 1.4E-18 93.1 12.7 101 3-111 480-591 (793)
85 KOG0318 WD40 repeat stress pro 99.6 5.5E-14 1.2E-18 87.2 11.2 102 2-111 143-250 (603)
86 KOG0289 mRNA splicing factor [ 99.6 5.9E-14 1.3E-18 85.4 11.0 101 3-111 300-404 (506)
87 KOG1007 WD repeat protein TSSC 99.6 1.4E-14 3E-19 84.4 7.9 100 5-111 169-273 (370)
88 KOG0278 Serine/threonine kinas 99.6 4.4E-15 9.5E-20 85.0 5.5 99 5-111 99-199 (334)
89 KOG0294 WD40 repeat-containing 99.6 3.5E-14 7.5E-19 83.4 9.1 101 2-110 39-141 (362)
90 KOG0269 WD40 repeat-containing 99.6 9.1E-15 2E-19 93.8 6.9 103 2-111 129-235 (839)
91 KOG0647 mRNA export protein (c 99.6 1.1E-13 2.4E-18 80.9 10.5 96 6-109 27-126 (347)
92 KOG0267 Microtubule severing p 99.6 5.8E-15 1.2E-19 94.2 5.6 102 2-111 150-253 (825)
93 KOG0639 Transducin-like enhanc 99.6 3.6E-15 7.8E-20 92.3 4.5 92 13-111 515-607 (705)
94 KOG1446 Histone H3 (Lys4) meth 99.6 2.9E-13 6.3E-18 79.3 12.0 97 4-110 12-154 (311)
95 KOG1273 WD40 repeat protein [G 99.6 1.6E-13 3.5E-18 80.9 10.7 107 1-111 60-211 (405)
96 KOG1009 Chromatin assembly com 99.6 2.6E-14 5.6E-19 86.1 7.4 102 2-111 61-180 (434)
97 KOG0646 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 84.6 10.1 105 2-112 119-233 (476)
98 KOG0269 WD40 repeat-containing 99.6 4.6E-14 1E-18 90.7 8.8 98 5-110 175-277 (839)
99 KOG0772 Uncharacterized conser 99.5 4.3E-14 9.4E-19 87.6 7.6 103 2-112 264-380 (641)
100 KOG0313 Microtubule binding pr 99.5 2.1E-13 4.6E-18 81.7 10.2 100 3-111 190-315 (423)
101 KOG0274 Cdc4 and related F-box 99.5 4.7E-13 1E-17 85.3 11.9 94 2-105 245-340 (537)
102 KOG0640 mRNA cleavage stimulat 99.5 8.8E-14 1.9E-18 82.0 7.8 99 6-112 216-321 (430)
103 KOG0310 Conserved WD40 repeat- 99.5 5.4E-13 1.2E-17 81.9 11.1 100 4-111 194-294 (487)
104 KOG0306 WD40-repeat-containing 99.5 1.8E-13 3.9E-18 88.0 9.1 99 6-112 508-608 (888)
105 KOG0772 Uncharacterized conser 99.5 3.4E-14 7.3E-19 88.1 5.6 97 8-112 319-425 (641)
106 KOG0641 WD40 repeat protein [G 99.5 6.4E-13 1.4E-17 75.6 10.2 101 2-111 179-288 (350)
107 KOG0288 WD40 repeat protein Ti 99.5 5.1E-13 1.1E-17 80.9 10.4 97 7-111 342-446 (459)
108 KOG0300 WD40 repeat-containing 99.5 1.1E-13 2.5E-18 81.8 7.2 101 2-110 268-371 (481)
109 KOG1274 WD40 repeat protein [G 99.5 5.2E-13 1.1E-17 87.2 10.5 102 2-111 134-247 (933)
110 KOG0281 Beta-TrCP (transducin 99.5 1.4E-14 3E-19 86.4 3.0 94 1-106 315-410 (499)
111 KOG0281 Beta-TrCP (transducin 99.5 1.7E-13 3.6E-18 81.9 7.2 101 1-104 232-368 (499)
112 KOG0301 Phospholipase A2-activ 99.5 1.5E-12 3.2E-17 83.1 11.6 100 1-111 174-274 (745)
113 KOG1034 Transcriptional repres 99.5 6.9E-13 1.5E-17 78.5 9.2 101 5-112 88-197 (385)
114 KOG1034 Transcriptional repres 99.5 3.5E-13 7.5E-18 79.7 8.0 78 2-87 131-213 (385)
115 KOG0305 Anaphase promoting com 99.5 1.7E-12 3.6E-17 81.3 11.2 103 2-112 339-447 (484)
116 KOG0303 Actin-binding protein 99.5 4.5E-13 9.7E-18 80.9 8.2 99 2-109 127-229 (472)
117 KOG0308 Conserved WD40 repeat- 99.5 1.1E-12 2.4E-17 83.3 10.2 102 2-111 113-228 (735)
118 KOG0302 Ribosome Assembly prot 99.5 3.9E-13 8.6E-18 80.7 7.6 76 3-85 299-378 (440)
119 KOG2110 Uncharacterized conser 99.5 5.1E-12 1.1E-16 75.7 12.1 92 13-111 135-233 (391)
120 KOG2139 WD40 repeat protein [G 99.5 2E-12 4.3E-17 77.6 10.1 97 7-111 196-295 (445)
121 KOG1063 RNA polymerase II elon 99.5 3.4E-13 7.4E-18 85.9 7.3 102 2-111 521-633 (764)
122 KOG0643 Translation initiation 99.4 1.5E-12 3.3E-17 75.3 8.7 99 4-110 145-245 (327)
123 KOG1524 WD40 repeat-containing 99.4 7.9E-13 1.7E-17 82.7 7.4 99 2-109 100-240 (737)
124 KOG1445 Tumor-specific antigen 99.4 2.4E-13 5.2E-18 86.6 5.2 80 1-88 672-753 (1012)
125 KOG0274 Cdc4 and related F-box 99.4 3.1E-12 6.8E-17 81.7 10.1 94 2-107 287-382 (537)
126 KOG0268 Sof1-like rRNA process 99.4 5.7E-13 1.2E-17 79.7 6.3 56 2-58 62-119 (433)
127 KOG4283 Transcription-coupled 99.4 5.7E-12 1.2E-16 74.0 9.5 98 7-111 144-261 (397)
128 KOG0300 WD40 repeat-containing 99.4 6.2E-12 1.3E-16 74.7 9.6 101 1-110 309-412 (481)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 4.1E-11 9E-16 71.3 13.4 96 8-111 32-129 (300)
130 KOG0301 Phospholipase A2-activ 99.4 3.9E-12 8.4E-17 81.2 9.0 95 2-109 136-232 (745)
131 KOG0299 U3 snoRNP-associated p 99.4 1.2E-12 2.6E-17 80.1 6.3 86 4-97 200-286 (479)
132 KOG0639 Transducin-like enhanc 99.4 2E-12 4.3E-17 80.5 7.3 98 6-111 465-566 (705)
133 KOG1445 Tumor-specific antigen 99.4 8.2E-13 1.8E-17 84.2 4.7 98 7-111 628-735 (1012)
134 KOG1310 WD40 repeat protein [G 99.4 4.6E-12 1E-16 79.6 7.2 79 2-86 46-126 (758)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 9.1E-11 2E-15 69.8 12.6 97 9-112 159-264 (300)
136 KOG1332 Vesicle coat complex C 99.3 3.9E-12 8.4E-17 72.8 6.1 100 3-109 8-115 (299)
137 KOG0646 WD40 repeat protein [G 99.3 1.4E-11 3.1E-16 75.6 8.7 94 6-107 81-185 (476)
138 KOG0644 Uncharacterized conser 99.3 3.7E-13 8.1E-18 87.6 1.9 98 2-107 186-285 (1113)
139 KOG1539 WD repeat protein [Gen 99.3 1.3E-11 2.9E-16 80.3 8.4 75 2-85 572-648 (910)
140 KOG0288 WD40 repeat protein Ti 99.3 3.3E-11 7.1E-16 73.3 9.2 106 2-111 215-356 (459)
141 KOG0299 U3 snoRNP-associated p 99.3 2.2E-11 4.7E-16 74.7 8.5 102 2-111 138-259 (479)
142 KOG4283 Transcription-coupled 99.3 3.7E-11 8.1E-16 70.7 9.1 102 4-111 99-203 (397)
143 KOG1274 WD40 repeat protein [G 99.3 3E-11 6.5E-16 79.2 9.5 97 6-110 96-202 (933)
144 KOG0650 WD40 repeat nucleolar 99.3 7.8E-11 1.7E-15 74.7 10.8 59 1-61 395-454 (733)
145 KOG0649 WD40 repeat protein [G 99.3 4.6E-11 1E-15 68.7 9.0 79 8-94 116-195 (325)
146 KOG0322 G-protein beta subunit 99.3 6.9E-12 1.5E-16 72.5 5.7 69 8-84 253-322 (323)
147 PRK05137 tolB translocation pr 99.3 6.5E-11 1.4E-15 74.5 10.4 101 3-111 198-304 (435)
148 KOG1063 RNA polymerase II elon 99.3 1.2E-11 2.5E-16 79.2 7.0 97 2-106 568-674 (764)
149 PRK01742 tolB translocation pr 99.3 1.3E-10 2.8E-15 73.0 11.7 100 3-111 200-306 (429)
150 KOG0290 Conserved WD40 repeat- 99.3 2.5E-11 5.5E-16 71.1 7.7 98 3-107 193-346 (364)
151 KOG1538 Uncharacterized conser 99.3 4.2E-11 9.2E-16 77.1 8.8 91 8-107 14-104 (1081)
152 KOG1332 Vesicle coat complex C 99.3 4.8E-11 1E-15 68.5 7.9 100 2-107 52-160 (299)
153 KOG2048 WD40 repeat protein [G 99.3 4.6E-11 1E-15 76.2 8.6 99 5-112 153-261 (691)
154 KOG2096 WD40 repeat protein [G 99.3 5.5E-11 1.2E-15 70.6 8.2 101 2-111 274-388 (420)
155 PRK03629 tolB translocation pr 99.3 1.5E-10 3.3E-15 72.7 10.6 101 5-111 197-301 (429)
156 KOG2919 Guanine nucleotide-bin 99.3 2.9E-11 6.3E-16 71.8 6.6 98 2-107 246-351 (406)
157 KOG2445 Nuclear pore complex c 99.3 4.2E-10 9.2E-15 66.5 11.0 100 3-108 10-124 (361)
158 KOG0290 Conserved WD40 repeat- 99.2 2E-10 4.3E-15 67.5 9.4 97 5-108 149-254 (364)
159 KOG0771 Prolactin regulatory e 99.2 2.8E-11 6.2E-16 73.3 6.1 74 13-94 150-224 (398)
160 KOG1007 WD repeat protein TSSC 99.2 1.5E-10 3.3E-15 67.9 8.7 102 4-112 212-346 (370)
161 PRK04922 tolB translocation pr 99.2 2.7E-10 5.8E-15 71.7 10.4 102 4-111 201-306 (433)
162 KOG2048 WD40 repeat protein [G 99.2 7.5E-10 1.6E-14 70.9 11.8 102 2-111 64-169 (691)
163 KOG0641 WD40 repeat protein [G 99.2 7.8E-10 1.7E-14 63.2 10.7 94 7-108 232-331 (350)
164 KOG3914 WD repeat protein WDR4 99.2 6.1E-11 1.3E-15 71.7 6.5 84 3-95 148-233 (390)
165 KOG0307 Vesicle coat complex C 99.2 2.2E-11 4.9E-16 81.1 5.1 100 3-109 113-219 (1049)
166 KOG1036 Mitotic spindle checkp 99.2 3.3E-10 7.2E-15 66.7 9.3 93 6-108 13-106 (323)
167 PF08662 eIF2A: Eukaryotic tra 99.2 6.3E-10 1.4E-14 63.1 10.1 78 6-94 100-187 (194)
168 KOG1036 Mitotic spindle checkp 99.2 4.8E-10 1E-14 66.0 9.6 91 5-105 53-144 (323)
169 KOG0268 Sof1-like rRNA process 99.2 3E-11 6.4E-16 72.6 4.4 95 10-112 233-331 (433)
170 KOG0771 Prolactin regulatory e 99.2 6.4E-10 1.4E-14 67.6 9.6 100 3-111 183-339 (398)
171 KOG2111 Uncharacterized conser 99.2 3.7E-10 8.1E-15 66.8 8.3 77 2-86 177-257 (346)
172 KOG1408 WD40 repeat protein [F 99.2 3.6E-10 7.9E-15 73.4 8.7 96 8-111 598-698 (1080)
173 KOG1009 Chromatin assembly com 99.2 8.1E-11 1.8E-15 71.4 5.5 76 2-85 119-195 (434)
174 KOG0321 WD40 repeat-containing 99.2 6E-11 1.3E-15 75.5 5.1 77 3-86 97-176 (720)
175 KOG2055 WD40 repeat protein [G 99.2 3.8E-10 8.3E-15 69.6 7.9 97 7-111 345-450 (514)
176 PRK02889 tolB translocation pr 99.2 1.3E-09 2.8E-14 68.5 10.5 100 4-112 193-299 (427)
177 KOG1963 WD40 repeat protein [G 99.1 9.6E-10 2.1E-14 71.9 9.9 98 5-110 204-306 (792)
178 PRK00178 tolB translocation pr 99.1 1.5E-09 3.3E-14 68.3 10.5 101 5-111 197-301 (430)
179 KOG1408 WD40 repeat protein [F 99.1 3.1E-10 6.7E-15 73.7 7.4 100 4-111 76-180 (1080)
180 KOG0649 WD40 repeat protein [G 99.1 1.9E-09 4.2E-14 62.2 9.8 94 2-106 152-256 (325)
181 KOG2110 Uncharacterized conser 99.1 9E-10 2E-14 66.3 8.5 77 2-86 169-249 (391)
182 KOG2394 WD40 protein DMR-N9 [G 99.1 2.1E-10 4.5E-15 72.0 6.0 98 7-112 220-348 (636)
183 KOG4378 Nuclear protein COP1 [ 99.1 8.4E-10 1.8E-14 69.0 8.4 93 13-111 170-265 (673)
184 KOG1272 WD40-repeat-containing 99.1 2.9E-10 6.2E-15 70.3 6.1 94 7-108 252-346 (545)
185 KOG4328 WD40 protein [Function 99.1 7E-10 1.5E-14 68.4 7.6 103 2-111 230-384 (498)
186 KOG0270 WD40 repeat-containing 99.1 3.1E-09 6.6E-14 65.3 10.2 100 2-109 282-386 (463)
187 KOG0307 Vesicle coat complex C 99.1 4.9E-10 1.1E-14 75.0 7.3 94 9-109 209-309 (1049)
188 PRK04792 tolB translocation pr 99.1 3.4E-09 7.3E-14 67.1 10.8 98 6-111 217-320 (448)
189 PRK05137 tolB translocation pr 99.1 5.2E-09 1.1E-13 66.0 11.5 99 5-111 244-348 (435)
190 PF00400 WD40: WD domain, G-be 99.1 9E-10 2E-14 46.5 5.7 38 39-83 2-39 (39)
191 KOG2111 Uncharacterized conser 99.1 4.9E-09 1.1E-13 62.2 10.4 85 20-111 149-241 (346)
192 KOG4378 Nuclear protein COP1 [ 99.1 4.1E-09 9E-14 66.0 10.4 97 3-108 205-305 (673)
193 KOG0322 G-protein beta subunit 99.1 4.5E-10 9.8E-15 65.2 5.7 99 4-110 203-307 (323)
194 KOG2919 Guanine nucleotide-bin 99.1 4.5E-09 9.7E-14 62.8 9.7 95 12-112 163-266 (406)
195 PRK03629 tolB translocation pr 99.1 1.3E-08 2.8E-13 64.2 12.4 97 7-111 243-345 (429)
196 TIGR02800 propeller_TolB tol-p 99.1 4.2E-09 9E-14 65.9 10.0 99 5-111 188-292 (417)
197 KOG2106 Uncharacterized conser 99.1 1.1E-08 2.4E-13 64.2 11.5 56 48-111 447-506 (626)
198 KOG2106 Uncharacterized conser 99.1 4.5E-09 9.7E-14 65.9 9.8 97 3-111 365-462 (626)
199 KOG0650 WD40 repeat nucleolar 99.0 1.8E-09 3.8E-14 68.8 7.7 62 42-110 394-455 (733)
200 PRK01029 tolB translocation pr 99.0 7.6E-09 1.6E-13 65.2 10.3 99 9-112 283-386 (428)
201 KOG1523 Actin-related protein 99.0 2.5E-09 5.4E-14 63.6 7.4 102 2-111 51-161 (361)
202 KOG1188 WD40 repeat protein [G 99.0 3.9E-09 8.5E-14 63.2 8.1 100 2-108 66-223 (376)
203 KOG2445 Nuclear pore complex c 99.0 3.8E-09 8.3E-14 62.6 7.8 90 2-100 219-336 (361)
204 KOG0974 WD-repeat protein WDR6 99.0 4.7E-09 1E-13 70.0 9.0 96 2-108 171-270 (967)
205 KOG4547 WD40 repeat-containing 99.0 1.4E-08 3E-13 64.2 10.7 94 4-107 100-195 (541)
206 KOG0642 Cell-cycle nuclear pro 99.0 3.3E-09 7.2E-14 66.9 7.9 80 2-89 340-430 (577)
207 KOG4227 WD40 repeat protein [G 99.0 5.7E-09 1.2E-13 63.9 8.6 101 2-110 52-163 (609)
208 KOG0280 Uncharacterized conser 99.0 7.3E-09 1.6E-13 61.1 8.7 99 3-108 162-265 (339)
209 PF02239 Cytochrom_D1: Cytochr 99.0 1.8E-08 4E-13 62.3 10.8 86 20-112 6-93 (369)
210 COG2319 FOG: WD40 repeat [Gene 99.0 3.1E-08 6.8E-13 60.5 11.9 102 2-110 151-255 (466)
211 KOG2055 WD40 repeat protein [G 99.0 2.1E-08 4.7E-13 62.2 10.7 91 13-111 309-402 (514)
212 PRK04922 tolB translocation pr 99.0 3.4E-08 7.3E-13 62.4 12.0 97 7-112 248-351 (433)
213 PF00400 WD40: WD domain, G-be 99.0 9.6E-10 2.1E-14 46.4 3.5 32 2-34 7-39 (39)
214 KOG1523 Actin-related protein 99.0 1.9E-08 4E-13 60.0 9.8 98 6-111 10-115 (361)
215 KOG0642 Cell-cycle nuclear pro 99.0 4.7E-09 1E-13 66.2 7.6 98 4-109 292-409 (577)
216 KOG4497 Uncharacterized conser 99.0 2.1E-08 4.5E-13 60.3 9.9 97 8-111 50-148 (447)
217 KOG1538 Uncharacterized conser 99.0 6.2E-09 1.3E-13 67.5 8.1 98 2-108 49-188 (1081)
218 COG4946 Uncharacterized protei 98.9 3.9E-08 8.5E-13 61.7 10.2 101 4-112 399-504 (668)
219 PRK04792 tolB translocation pr 98.9 7.7E-08 1.7E-12 61.0 11.6 96 9-112 264-365 (448)
220 KOG4328 WD40 protein [Function 98.9 1E-08 2.3E-13 63.4 7.4 99 5-111 321-435 (498)
221 PRK01742 tolB translocation pr 98.9 2.5E-08 5.5E-13 62.9 9.0 93 9-111 250-347 (429)
222 PRK02889 tolB translocation pr 98.9 5.7E-08 1.2E-12 61.3 10.4 98 5-112 282-386 (427)
223 PRK04043 tolB translocation pr 98.9 8.9E-08 1.9E-12 60.3 11.0 98 9-112 190-292 (419)
224 KOG3881 Uncharacterized conser 98.9 1.8E-08 3.9E-13 61.3 7.3 92 7-106 248-341 (412)
225 COG2319 FOG: WD40 repeat [Gene 98.9 2.5E-07 5.5E-12 56.6 12.6 101 2-111 194-299 (466)
226 PRK00178 tolB translocation pr 98.9 1.9E-07 4.1E-12 58.9 11.9 97 8-112 244-346 (430)
227 PRK01029 tolB translocation pr 98.8 2.3E-07 5E-12 58.6 11.6 96 7-108 327-426 (428)
228 PRK11028 6-phosphogluconolacto 98.8 1.6E-07 3.5E-12 57.3 10.5 93 13-112 85-190 (330)
229 KOG2139 WD40 repeat protein [G 98.8 1.3E-07 2.9E-12 57.4 9.6 99 6-112 140-254 (445)
230 TIGR02800 propeller_TolB tol-p 98.8 2.8E-07 6.2E-12 57.8 11.4 99 6-112 233-337 (417)
231 PF02239 Cytochrom_D1: Cytochr 98.8 5.5E-07 1.2E-11 55.9 12.3 90 13-109 42-140 (369)
232 KOG1587 Cytoplasmic dynein int 98.8 3.9E-08 8.5E-13 63.4 7.4 101 4-111 396-501 (555)
233 KOG2315 Predicted translation 98.8 1.9E-07 4.1E-12 59.2 10.1 95 6-112 270-370 (566)
234 PF11768 DUF3312: Protein of u 98.8 1.4E-07 3.1E-12 60.1 9.4 71 6-86 259-330 (545)
235 KOG2321 WD40 repeat protein [G 98.8 1.6E-07 3.5E-12 60.0 9.5 94 6-107 175-282 (703)
236 KOG0644 Uncharacterized conser 98.8 3.8E-09 8.3E-14 69.7 2.4 72 2-85 228-300 (1113)
237 KOG1524 WD40 repeat-containing 98.8 5.2E-08 1.1E-12 61.9 7.2 88 3-111 183-271 (737)
238 PRK11028 6-phosphogluconolacto 98.7 2.5E-06 5.5E-11 52.1 12.0 98 7-112 35-141 (330)
239 KOG0321 WD40 repeat-containing 98.6 1.7E-07 3.7E-12 60.4 6.6 93 13-112 55-160 (720)
240 KOG2315 Predicted translation 98.6 4.1E-07 8.9E-12 57.8 7.8 89 7-106 312-410 (566)
241 KOG4497 Uncharacterized conser 98.6 1.2E-06 2.6E-11 52.9 9.3 91 13-111 324-417 (447)
242 KOG0974 WD-repeat protein WDR6 98.6 7.7E-07 1.7E-11 59.9 9.0 85 16-107 142-229 (967)
243 KOG1963 WD40 repeat protein [G 98.6 1.4E-06 3E-11 57.8 9.5 92 9-104 18-109 (792)
244 KOG4227 WD40 repeat protein [G 98.6 2.6E-06 5.6E-11 52.7 9.8 98 5-110 104-208 (609)
245 KOG3881 Uncharacterized conser 98.6 2E-06 4.3E-11 52.7 9.3 92 13-111 208-305 (412)
246 KOG1188 WD40 repeat protein [G 98.5 1E-06 2.3E-11 53.1 7.7 65 21-91 42-108 (376)
247 COG4946 Uncharacterized protei 98.5 9E-06 2E-10 51.5 11.8 99 4-111 357-458 (668)
248 PRK04043 tolB translocation pr 98.5 4.3E-06 9.3E-11 52.9 10.1 95 9-111 235-333 (419)
249 KOG1272 WD40-repeat-containing 98.5 1.9E-07 4E-12 58.3 3.6 97 7-111 210-308 (545)
250 KOG1310 WD40 repeat protein [G 98.5 4.1E-07 8.8E-12 58.1 5.0 79 2-87 89-180 (758)
251 KOG2321 WD40 repeat protein [G 98.5 1.4E-06 2.9E-11 56.0 7.2 97 9-112 231-329 (703)
252 KOG4640 Anaphase-promoting com 98.5 2.5E-06 5.4E-11 55.2 8.3 85 13-105 26-114 (665)
253 KOG1645 RING-finger-containing 98.4 1.9E-06 4.2E-11 53.1 7.2 78 2-87 189-268 (463)
254 TIGR02658 TTQ_MADH_Hv methylam 98.4 2.8E-05 6E-10 48.1 11.2 77 28-112 27-120 (352)
255 PF10282 Lactonase: Lactonase, 98.3 7.4E-05 1.6E-09 46.2 12.5 94 13-112 92-207 (345)
256 KOG2314 Translation initiation 98.3 7.5E-06 1.6E-10 52.6 7.5 90 13-111 216-320 (698)
257 KOG1240 Protein kinase contain 98.3 1.4E-05 3E-10 55.5 9.0 77 2-86 1044-1129(1431)
258 KOG1334 WD40 repeat protein [G 98.3 9.5E-07 2.1E-11 55.6 3.2 76 2-85 387-466 (559)
259 PF08450 SGL: SMP-30/Gluconola 98.2 0.0002 4.4E-09 42.1 12.6 95 9-112 136-241 (246)
260 KOG1517 Guanine nucleotide bin 98.2 1.2E-05 2.6E-10 55.2 7.9 95 3-107 1251-1362(1387)
261 PF07433 DUF1513: Protein of u 98.2 0.00011 2.4E-09 44.5 11.2 95 13-112 56-178 (305)
262 PF10282 Lactonase: Lactonase, 98.2 0.00017 3.8E-09 44.6 12.5 94 13-112 197-307 (345)
263 KOG2695 WD40 repeat protein [G 98.2 6.5E-06 1.4E-10 50.1 5.6 85 5-97 297-388 (425)
264 COG0823 TolB Periplasmic compo 98.2 2.3E-05 5E-10 49.7 8.0 92 13-111 243-340 (425)
265 KOG4714 Nucleoporin [Nuclear s 98.1 4.2E-06 9E-11 49.2 4.0 72 8-86 181-255 (319)
266 smart00320 WD40 WD40 repeats. 98.1 1.8E-05 3.8E-10 31.9 5.0 37 40-83 4-40 (40)
267 KOG1587 Cytoplasmic dynein int 98.1 6.3E-05 1.4E-09 49.1 9.4 74 7-86 243-324 (555)
268 KOG1912 WD40 repeat protein [G 98.1 2.3E-05 5.1E-10 52.4 7.3 92 13-106 21-119 (1062)
269 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.00037 8.1E-09 43.3 12.0 94 14-112 200-315 (352)
270 KOG0280 Uncharacterized conser 98.1 0.00014 3.1E-09 43.6 9.4 89 13-107 127-221 (339)
271 COG2706 3-carboxymuconate cycl 98.1 0.00031 6.7E-09 43.0 11.0 96 9-112 147-259 (346)
272 COG0823 TolB Periplasmic compo 98.1 2.6E-05 5.6E-10 49.5 6.8 97 8-112 194-297 (425)
273 KOG1334 WD40 repeat protein [G 98.1 2.7E-05 5.8E-10 49.4 6.6 102 2-109 138-245 (559)
274 KOG1409 Uncharacterized conser 98.0 1.6E-05 3.4E-10 48.4 4.5 78 2-87 193-272 (404)
275 KOG1064 RAVE (regulator of V-A 98.0 5.1E-06 1.1E-10 59.6 2.7 74 3-94 2333-2407(2439)
276 PLN02919 haloacid dehalogenase 98.0 0.00055 1.2E-08 48.3 12.3 92 13-111 745-873 (1057)
277 COG2706 3-carboxymuconate cycl 98.0 0.00039 8.5E-09 42.6 10.2 93 13-112 94-206 (346)
278 KOG4547 WD40 repeat-containing 98.0 0.00026 5.5E-09 45.7 9.8 85 20-111 71-159 (541)
279 smart00320 WD40 WD40 repeats. 98.0 1.5E-05 3.3E-10 32.1 3.3 32 2-34 8-40 (40)
280 KOG0309 Conserved WD40 repeat- 98.0 2E-05 4.4E-10 52.4 5.1 97 1-105 109-210 (1081)
281 KOG4532 WD40-like repeat conta 97.9 0.00044 9.6E-09 41.2 9.7 77 13-94 209-291 (344)
282 KOG1517 Guanine nucleotide bin 97.9 0.00023 5.1E-09 49.3 9.6 63 18-86 1220-1288(1387)
283 PF11768 DUF3312: Protein of u 97.8 0.00013 2.9E-09 47.1 6.8 57 47-111 258-314 (545)
284 PF07433 DUF1513: Protein of u 97.8 0.0015 3.2E-08 39.8 10.7 92 13-111 10-113 (305)
285 KOG4190 Uncharacterized conser 97.8 4.1E-05 9E-10 49.7 4.3 79 2-90 731-817 (1034)
286 KOG2041 WD40 repeat protein [G 97.8 9.8E-05 2.1E-09 49.4 6.1 96 8-111 16-130 (1189)
287 PF08450 SGL: SMP-30/Gluconola 97.8 0.0018 3.9E-08 38.1 11.4 91 13-112 45-149 (246)
288 KOG4532 WD40-like repeat conta 97.8 0.0012 2.7E-08 39.4 9.6 92 9-108 161-262 (344)
289 KOG1240 Protein kinase contain 97.7 0.00053 1.2E-08 48.2 8.8 86 6-95 1195-1283(1431)
290 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.00034 7.4E-09 43.5 7.1 87 16-111 1-115 (353)
291 COG5354 Uncharacterized protei 97.7 0.0011 2.3E-08 42.7 9.1 96 5-111 273-374 (561)
292 KOG1354 Serine/threonine prote 97.7 6.2E-05 1.3E-09 46.1 3.6 103 3-112 161-288 (433)
293 PLN02919 haloacid dehalogenase 97.7 0.0016 3.4E-08 46.1 10.6 70 13-89 809-892 (1057)
294 PRK02888 nitrous-oxide reducta 97.7 0.0011 2.3E-08 44.1 9.1 69 9-86 323-405 (635)
295 KOG1912 WD40 repeat protein [G 97.7 0.00084 1.8E-08 45.4 8.6 101 2-106 51-165 (1062)
296 KOG2695 WD40 repeat protein [G 97.6 0.00015 3.3E-09 44.4 4.5 82 7-96 253-343 (425)
297 KOG3617 WD40 and TPR repeat-co 97.6 6.9E-05 1.5E-09 50.9 3.2 69 9-85 62-131 (1416)
298 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.0035 7.5E-08 40.0 10.3 90 4-95 305-408 (415)
299 COG3386 Gluconolactonase [Carb 97.6 0.0059 1.3E-07 37.5 10.9 95 8-111 164-270 (307)
300 PF15492 Nbas_N: Neuroblastoma 97.5 0.0058 1.3E-07 36.7 10.1 97 13-111 49-162 (282)
301 KOG2314 Translation initiation 97.5 0.00088 1.9E-08 43.6 7.2 98 7-111 446-552 (698)
302 KOG1832 HIV-1 Vpr-binding prot 97.5 0.00021 4.5E-09 49.0 4.3 78 2-86 1097-1176(1516)
303 KOG3621 WD40 repeat-containing 97.5 0.00086 1.9E-08 44.6 7.0 92 13-112 39-140 (726)
304 PF12894 Apc4_WD40: Anaphase-p 97.5 0.001 2.2E-08 29.1 5.0 33 49-89 12-44 (47)
305 PF02897 Peptidase_S9_N: Proly 97.4 0.0052 1.1E-07 39.0 10.0 93 13-112 129-242 (414)
306 PRK13616 lipoprotein LpqB; Pro 97.4 0.0034 7.4E-08 41.8 9.0 93 8-111 351-462 (591)
307 PF08553 VID27: VID27 cytoplas 97.4 0.0037 8E-08 42.8 8.9 85 20-112 544-634 (794)
308 PF15492 Nbas_N: Neuroblastoma 97.3 0.0096 2.1E-07 35.8 9.4 67 13-86 3-74 (282)
309 COG3490 Uncharacterized protei 97.3 0.0092 2E-07 36.3 9.2 94 14-112 120-241 (366)
310 KOG3617 WD40 and TPR repeat-co 97.3 0.00068 1.5E-08 46.4 4.6 94 9-111 17-116 (1416)
311 KOG1275 PAB-dependent poly(A) 97.3 0.00053 1.1E-08 47.0 4.1 68 16-92 184-261 (1118)
312 COG5354 Uncharacterized protei 97.2 0.0024 5.2E-08 41.2 6.6 93 7-109 33-144 (561)
313 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0014 3E-08 28.7 4.1 29 7-36 12-41 (47)
314 PRK02888 nitrous-oxide reducta 97.2 0.013 2.9E-07 39.2 9.8 92 13-112 198-336 (635)
315 KOG3914 WD repeat protein WDR4 97.2 0.00039 8.5E-09 43.1 2.6 42 2-45 190-232 (390)
316 KOG1354 Serine/threonine prote 97.2 0.0058 1.3E-07 37.9 7.4 73 7-87 273-361 (433)
317 KOG4714 Nucleoporin [Nuclear s 97.1 0.00048 1E-08 40.9 2.3 87 15-107 140-234 (319)
318 KOG0309 Conserved WD40 repeat- 97.1 0.00085 1.8E-08 45.2 3.5 91 13-109 164-258 (1081)
319 KOG1645 RING-finger-containing 97.1 0.0018 3.9E-08 40.7 4.7 74 30-109 175-248 (463)
320 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.017 3.6E-07 34.8 8.3 72 19-97 63-135 (354)
321 KOG2079 Vacuolar assembly/sort 97.0 0.0043 9.2E-08 43.5 6.5 50 6-56 130-180 (1206)
322 COG3391 Uncharacterized conser 97.0 0.04 8.6E-07 34.9 10.9 93 13-112 121-222 (381)
323 KOG2066 Vacuolar assembly/sort 96.9 0.013 2.9E-07 39.9 8.1 74 19-107 49-123 (846)
324 KOG2066 Vacuolar assembly/sort 96.9 0.017 3.7E-07 39.4 8.5 83 18-105 82-169 (846)
325 KOG4640 Anaphase-promoting com 96.9 0.0044 9.6E-08 41.0 5.4 54 5-58 60-115 (665)
326 PF04762 IKI3: IKI3 family; I 96.8 0.033 7.1E-07 39.3 9.4 88 12-108 261-360 (928)
327 TIGR03300 assembly_YfgL outer 96.8 0.041 8.8E-07 34.6 9.2 70 19-97 279-350 (377)
328 PF04053 Coatomer_WDAD: Coatom 96.7 0.072 1.6E-06 34.6 10.0 36 75-111 124-159 (443)
329 PF14583 Pectate_lyase22: Olig 96.7 0.053 1.1E-06 34.4 8.9 91 5-104 34-130 (386)
330 COG5170 CDC55 Serine/threonine 96.7 0.0025 5.4E-08 39.0 3.1 101 4-111 170-295 (460)
331 KOG2079 Vacuolar assembly/sort 96.6 0.0092 2E-07 42.0 5.8 71 20-97 100-172 (1206)
332 KOG1064 RAVE (regulator of V-A 96.5 0.016 3.4E-07 43.2 6.6 72 6-85 2208-2281(2439)
333 PRK13616 lipoprotein LpqB; Pro 96.5 0.087 1.9E-06 35.5 9.6 91 9-111 399-511 (591)
334 KOG1920 IkappaB kinase complex 96.5 0.03 6.6E-07 40.0 7.6 94 13-111 201-304 (1265)
335 PF04053 Coatomer_WDAD: Coatom 96.5 0.041 8.9E-07 35.7 7.8 79 19-107 117-207 (443)
336 KOG4499 Ca2+-binding protein R 96.4 0.084 1.8E-06 31.5 10.2 86 13-105 163-262 (310)
337 KOG2041 WD40 repeat protein [G 96.4 0.011 2.4E-07 40.2 5.2 59 2-61 67-128 (1189)
338 KOG1275 PAB-dependent poly(A) 96.4 0.017 3.7E-07 40.2 6.0 100 2-111 213-327 (1118)
339 PF06433 Me-amine-dh_H: Methyl 96.4 0.057 1.2E-06 33.7 7.6 79 13-97 243-332 (342)
340 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.032 6.9E-07 34.9 6.6 32 7-39 43-74 (353)
341 COG3391 Uncharacterized conser 96.3 0.14 3E-06 32.6 11.5 93 13-112 79-175 (381)
342 KOG4190 Uncharacterized conser 96.2 0.035 7.5E-07 36.9 6.4 104 2-111 780-891 (1034)
343 PRK10115 protease 2; Provision 96.2 0.23 5.1E-06 34.1 11.8 66 13-87 132-209 (686)
344 TIGR02276 beta_rpt_yvtn 40-res 96.1 0.029 6.4E-07 23.3 5.4 30 17-46 1-32 (42)
345 PF10168 Nup88: Nuclear pore c 96.1 0.15 3.2E-06 35.2 9.1 74 9-87 87-181 (717)
346 KOG2395 Protein involved in va 96.0 0.083 1.8E-06 34.9 7.3 83 21-111 397-486 (644)
347 PF04762 IKI3: IKI3 family; I 96.0 0.11 2.4E-06 36.9 8.3 67 7-82 76-147 (928)
348 KOG0882 Cyclophilin-related pe 96.0 0.019 4.2E-07 36.9 4.3 81 5-93 143-239 (558)
349 KOG3621 WD40 repeat-containing 95.9 0.062 1.3E-06 36.4 6.4 67 13-86 82-155 (726)
350 PF13360 PQQ_2: PQQ-like domai 95.9 0.1 2.2E-06 30.4 6.9 68 17-93 34-102 (238)
351 PF15390 DUF4613: Domain of un 95.8 0.18 3.9E-06 33.9 8.2 99 5-111 55-170 (671)
352 PF12657 TFIIIC_delta: Transcr 95.7 0.17 3.6E-06 28.5 9.3 35 50-85 87-121 (173)
353 PF06977 SdiA-regulated: SdiA- 95.6 0.24 5.2E-06 29.7 11.4 100 4-112 19-133 (248)
354 TIGR03300 assembly_YfgL outer 95.6 0.3 6.5E-06 30.8 9.3 67 19-94 65-132 (377)
355 KOG1409 Uncharacterized conser 95.6 0.15 3.2E-06 32.0 6.8 75 2-84 20-97 (404)
356 KOG1832 HIV-1 Vpr-binding prot 95.5 0.051 1.1E-06 38.2 5.3 64 40-110 1093-1157(1516)
357 COG3204 Uncharacterized protei 95.5 0.3 6.5E-06 30.1 10.0 100 4-112 83-196 (316)
358 PF14783 BBS2_Mid: Ciliary BBS 95.5 0.15 3.3E-06 26.6 7.6 31 72-104 20-50 (111)
359 PF10313 DUF2415: Uncharacteri 95.5 0.072 1.6E-06 22.8 4.3 29 8-37 2-34 (43)
360 PF14783 BBS2_Mid: Ciliary BBS 95.3 0.18 3.9E-06 26.3 11.0 58 16-84 11-70 (111)
361 PF04841 Vps16_N: Vps16, N-ter 95.2 0.48 1E-05 30.6 8.9 64 13-85 34-109 (410)
362 COG5170 CDC55 Serine/threonine 95.1 0.057 1.2E-06 33.4 4.0 78 9-95 224-320 (460)
363 PF11715 Nup160: Nucleoporin N 95.0 0.51 1.1E-05 31.5 8.6 26 69-94 232-257 (547)
364 PF02897 Peptidase_S9_N: Proly 95.0 0.15 3.2E-06 32.6 5.9 56 53-112 128-185 (414)
365 PF10313 DUF2415: Uncharacteri 95.0 0.12 2.5E-06 22.2 5.0 35 49-87 1-35 (43)
366 PF13360 PQQ_2: PQQ-like domai 94.9 0.4 8.6E-06 27.9 7.4 61 27-95 2-64 (238)
367 PF08553 VID27: VID27 cytoplas 94.8 0.29 6.2E-06 34.2 7.1 63 13-84 583-646 (794)
368 PRK11138 outer membrane biogen 94.8 0.63 1.4E-05 29.7 9.3 27 69-95 337-363 (394)
369 PF08596 Lgl_C: Lethal giant l 94.6 0.73 1.6E-05 29.7 10.4 38 47-92 85-122 (395)
370 PF10647 Gmad1: Lipoprotein Lp 94.5 0.57 1.2E-05 28.1 10.2 93 8-111 25-126 (253)
371 TIGR02604 Piru_Ver_Nterm putat 94.4 0.79 1.7E-05 29.1 9.6 33 78-111 165-198 (367)
372 KOG0882 Cyclophilin-related pe 94.3 0.3 6.5E-06 31.8 5.9 100 4-109 51-157 (558)
373 KOG2444 WD40 repeat protein [G 93.9 0.26 5.6E-06 29.1 4.8 59 20-85 115-177 (238)
374 TIGR02276 beta_rpt_yvtn 40-res 93.9 0.21 4.5E-06 20.6 5.9 35 70-104 7-41 (42)
375 TIGR02171 Fb_sc_TIGR02171 Fibr 93.3 0.44 9.4E-06 33.8 5.7 67 5-75 348-422 (912)
376 PF07569 Hira: TUP1-like enhan 93.3 0.98 2.1E-05 26.6 9.2 67 14-88 17-98 (219)
377 KOG4499 Ca2+-binding protein R 93.2 0.82 1.8E-05 27.5 6.0 45 13-57 217-262 (310)
378 PF10647 Gmad1: Lipoprotein Lp 93.1 1.1 2.5E-05 26.9 11.0 99 8-111 67-180 (253)
379 KOG1920 IkappaB kinase complex 93.1 1.7 3.7E-05 32.0 8.3 68 7-83 69-137 (1265)
380 PF06977 SdiA-regulated: SdiA- 92.9 1.3 2.8E-05 26.7 8.7 62 43-111 16-79 (248)
381 KOG2727 Rab3 GTPase-activating 92.8 0.43 9.4E-06 34.0 5.1 79 13-94 327-415 (1244)
382 KOG1008 Uncharacterized conser 92.3 0.24 5.1E-06 33.7 3.4 71 8-85 197-275 (783)
383 PF07569 Hira: TUP1-like enhan 92.0 1.6 3.4E-05 25.8 6.4 22 69-90 24-45 (219)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.8 2.8 6E-05 28.2 8.6 29 69-97 474-502 (527)
385 KOG1008 Uncharacterized conser 91.4 0.04 8.7E-07 37.1 -0.7 87 13-108 160-255 (783)
386 KOG2444 WD40 repeat protein [G 91.4 2 4.2E-05 25.7 7.5 71 20-96 71-143 (238)
387 PRK11138 outer membrane biogen 91.4 2.6 5.6E-05 27.0 8.2 66 19-94 120-187 (394)
388 PF12234 Rav1p_C: RAVE protein 90.4 4.4 9.5E-05 28.1 11.4 77 27-111 50-143 (631)
389 PF05096 Glu_cyclase_2: Glutam 90.3 2.8 6.1E-05 25.6 9.0 91 14-112 134-246 (264)
390 PF03088 Str_synth: Strictosid 90.0 1.2 2.6E-05 22.4 4.0 39 73-111 33-71 (89)
391 COG3490 Uncharacterized protei 89.7 3.4 7.4E-05 25.8 9.2 92 13-111 73-176 (366)
392 PF11715 Nup160: Nucleoporin N 89.6 1 2.2E-05 30.2 4.5 30 13-42 220-254 (547)
393 PF14870 PSII_BNR: Photosynthe 89.5 3.6 7.9E-05 25.7 10.1 94 7-110 145-246 (302)
394 KOG4460 Nuclear pore complex, 89.1 4.7 0.0001 27.4 6.9 73 13-89 109-202 (741)
395 KOG2377 Uncharacterized conser 88.8 5.3 0.00012 26.7 8.0 54 6-60 66-124 (657)
396 PF05694 SBP56: 56kDa selenium 88.4 4.8 0.0001 26.6 6.6 54 7-61 312-386 (461)
397 PF04841 Vps16_N: Vps16, N-ter 88.0 5.5 0.00012 25.9 11.5 55 48-109 216-272 (410)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 87.9 3.2 6.8E-05 27.2 5.7 44 47-97 306-349 (415)
399 COG5167 VID27 Protein involved 87.9 5.4 0.00012 27.1 6.7 43 69-111 575-618 (776)
400 KOG4649 PQQ (pyrrolo-quinoline 87.8 4.7 0.0001 24.9 10.3 74 13-95 16-91 (354)
401 KOG1916 Nuclear protein, conta 87.5 4.1 8.9E-05 29.6 6.2 76 14-90 242-328 (1283)
402 PF07676 PD40: WD40-like Beta 87.4 1.3 2.8E-05 18.0 5.5 15 47-61 7-21 (39)
403 PF08596 Lgl_C: Lethal giant l 87.1 6.3 0.00014 25.6 7.7 84 21-111 228-321 (395)
404 PF07995 GSDH: Glucose / Sorbo 87.0 5.7 0.00012 25.0 10.6 46 13-59 7-59 (331)
405 PF00780 CNH: CNH domain; Int 86.9 4.9 0.00011 24.2 7.0 61 16-86 4-65 (275)
406 PF01731 Arylesterase: Arylest 86.3 2.5 5.5E-05 21.1 3.7 27 9-36 56-84 (86)
407 KOG2395 Protein involved in va 85.1 8.8 0.00019 26.2 6.6 42 20-61 442-484 (644)
408 KOG2247 WD40 repeat-containing 85.1 0.18 4E-06 33.2 -0.7 90 13-110 80-173 (615)
409 PF03178 CPSF_A: CPSF A subuni 84.9 7.2 0.00016 24.2 9.0 81 19-108 98-184 (321)
410 PF15390 DUF4613: Domain of un 84.7 11 0.00024 26.1 7.3 66 13-86 118-187 (671)
411 COG3386 Gluconolactonase [Carb 84.3 7.9 0.00017 24.3 8.9 87 13-111 30-125 (307)
412 smart00564 PQQ beta-propeller 84.2 1.8 3.8E-05 16.7 3.7 23 70-92 9-31 (33)
413 KOG3630 Nuclear pore complex, 83.9 2.1 4.5E-05 31.6 3.7 94 13-112 106-214 (1405)
414 COG3204 Uncharacterized protei 83.3 7.7 0.00017 24.3 5.5 59 45-110 82-142 (316)
415 TIGR03606 non_repeat_PQQ dehyd 83.2 11 0.00024 25.1 11.7 52 8-60 31-90 (454)
416 PF14269 Arylsulfotran_2: Aryl 82.2 9.7 0.00021 23.7 7.2 38 9-47 146-184 (299)
417 PF01011 PQQ: PQQ enzyme repea 81.8 2.7 5.9E-05 17.1 4.4 26 72-97 5-30 (38)
418 KOG3630 Nuclear pore complex, 81.2 8.6 0.00019 28.8 5.7 88 13-109 161-256 (1405)
419 KOG3616 Selective LIM binding 80.9 8.7 0.00019 27.6 5.6 65 8-83 16-81 (1636)
420 KOG1916 Nuclear protein, conta 79.7 2.4 5.3E-05 30.6 2.8 59 18-84 194-264 (1283)
421 KOG2114 Vacuolar assembly/sort 79.2 22 0.00047 25.8 9.6 80 6-94 171-252 (933)
422 PF12234 Rav1p_C: RAVE protein 78.7 20 0.00043 25.1 8.3 39 73-111 47-89 (631)
423 PF06433 Me-amine-dh_H: Methyl 78.3 15 0.00033 23.5 8.9 68 13-90 100-171 (342)
424 PF05096 Glu_cyclase_2: Glutam 77.5 14 0.0003 22.7 10.0 82 13-102 50-135 (264)
425 cd00216 PQQ_DH Dehydrogenases 77.5 19 0.0004 24.1 8.3 68 20-95 62-138 (488)
426 PF05694 SBP56: 56kDa selenium 75.7 21 0.00046 23.9 10.3 84 16-106 138-254 (461)
427 PRK13684 Ycf48-like protein; P 74.6 19 0.00041 22.8 9.9 94 8-110 174-273 (334)
428 PF14761 HPS3_N: Hermansky-Pud 74.5 16 0.00034 21.8 6.4 52 15-74 23-78 (215)
429 PF14761 HPS3_N: Hermansky-Pud 74.2 16 0.00035 21.8 7.3 39 74-112 35-75 (215)
430 PF13449 Phytase-like: Esteras 73.6 20 0.00043 22.6 10.1 52 53-112 89-162 (326)
431 KOG2114 Vacuolar assembly/sort 71.6 37 0.0008 24.8 10.5 94 8-109 127-227 (933)
432 cd00216 PQQ_DH Dehydrogenases 70.9 29 0.00062 23.3 8.0 29 69-97 408-436 (488)
433 PF00780 CNH: CNH domain; Int 70.0 21 0.00046 21.5 9.1 90 9-106 38-148 (275)
434 PF14870 PSII_BNR: Photosynthe 69.2 26 0.00056 22.1 10.8 57 48-111 144-201 (302)
435 PF13570 PQQ_3: PQQ-like domai 68.5 7.7 0.00017 15.8 3.3 20 18-37 20-40 (40)
436 PF10584 Proteasome_A_N: Prote 66.1 2.1 4.5E-05 15.7 0.1 8 103-110 7-14 (23)
437 COG5167 VID27 Protein involved 62.8 49 0.0011 23.0 6.4 43 19-61 573-616 (776)
438 KOG2280 Vacuolar assembly/sort 62.7 24 0.00051 25.3 4.4 48 29-85 65-112 (829)
439 PF01436 NHL: NHL repeat; Int 62.0 9.1 0.0002 14.3 4.2 9 52-60 5-13 (28)
440 PF05787 DUF839: Bacterial pro 60.3 42 0.00092 23.0 5.2 15 98-112 503-517 (524)
441 TIGR02608 delta_60_rpt delta-6 58.8 12 0.00027 16.9 1.9 14 13-26 6-19 (55)
442 PF10168 Nup88: Nuclear pore c 56.7 29 0.00064 24.8 4.1 31 7-38 147-181 (717)
443 TIGR02604 Piru_Ver_Nterm putat 56.2 52 0.0011 21.2 9.6 51 9-60 16-83 (367)
444 PF03178 CPSF_A: CPSF A subuni 54.8 50 0.0011 20.6 7.0 57 28-94 62-125 (321)
445 COG3823 Glutamine cyclotransfe 53.6 48 0.001 20.1 7.0 25 19-43 56-83 (262)
446 KOG2247 WD40 repeat-containing 53.5 14 0.0003 25.1 2.1 48 13-60 123-171 (615)
447 COG4257 Vgb Streptogramin lyas 53.5 56 0.0012 20.7 7.8 91 13-112 67-163 (353)
448 smart00135 LY Low-density lipo 52.8 17 0.00036 14.5 4.1 28 8-36 10-39 (43)
449 PF12341 DUF3639: Protein of u 51.6 16 0.00035 13.9 3.6 14 69-82 13-26 (27)
450 TIGR03074 PQQ_membr_DH membran 50.4 97 0.0021 22.6 8.0 26 72-97 697-722 (764)
451 PF08801 Nucleoporin_N: Nup133 49.1 74 0.0016 20.9 5.8 28 9-37 192-220 (422)
452 PF12768 Rax2: Cortical protei 49.1 64 0.0014 20.2 8.5 55 28-89 16-76 (281)
453 smart00036 CNH Domain found in 48.8 65 0.0014 20.2 7.7 60 18-84 12-72 (302)
454 KOG4441 Proteins containing BT 47.4 95 0.0021 21.6 7.2 22 69-90 478-504 (571)
455 KOG3616 Selective LIM binding 43.8 56 0.0012 24.0 3.9 29 51-86 17-45 (1636)
456 TIGR02171 Fb_sc_TIGR02171 Fibr 43.6 1.4E+02 0.003 22.4 8.5 61 21-86 320-386 (912)
457 KOG1900 Nuclear pore complex, 43.4 1.6E+02 0.0035 23.1 6.5 71 8-86 180-273 (1311)
458 PF13418 Kelch_4: Galactose ox 42.2 31 0.00067 14.5 2.4 25 15-39 9-40 (49)
459 PF12566 DUF3748: Protein of u 41.0 24 0.00053 18.8 1.5 21 14-34 74-95 (122)
460 KOG1983 Tomosyn and related SN 40.8 1.4E+02 0.0031 22.6 5.6 21 69-89 248-268 (993)
461 COG1770 PtrB Protease II [Amin 40.4 1.4E+02 0.003 21.5 10.0 49 11-61 132-186 (682)
462 PF14779 BBS1: Ciliary BBSome 39.2 95 0.0021 19.3 6.7 56 20-82 196-255 (257)
463 KOG1898 Splicing factor 3b, su 39.2 1.8E+02 0.0039 22.4 7.5 48 48-96 582-629 (1205)
464 COG3211 PhoX Predicted phospha 37.1 99 0.0021 21.7 4.1 15 98-112 555-569 (616)
465 TIGR03075 PQQ_enz_alc_DH PQQ-d 37.1 1.4E+02 0.003 20.6 8.3 69 20-94 121-198 (527)
466 TIGR03074 PQQ_membr_DH membran 36.9 1.7E+02 0.0037 21.5 9.9 72 19-94 194-287 (764)
467 PF14583 Pectate_lyase22: Olig 36.7 1.3E+02 0.0028 20.0 12.7 92 13-108 86-199 (386)
468 PF13983 YsaB: YsaB-like lipop 36.5 33 0.00071 16.4 1.4 11 13-23 63-73 (77)
469 PHA02713 hypothetical protein; 35.6 1.5E+02 0.0033 20.6 7.4 20 69-88 354-378 (557)
470 PF14781 BBS2_N: Ciliary BBSom 35.3 82 0.0018 17.4 8.5 70 13-89 4-85 (136)
471 cd01211 GAPCenA GAPCenA Phosph 35.2 79 0.0017 17.2 4.8 22 72-93 46-67 (125)
472 PRK14751 tetracycline resistan 35.0 31 0.00068 12.9 1.0 11 74-84 12-22 (28)
473 PF07995 GSDH: Glucose / Sorbo 34.8 1.2E+02 0.0027 19.3 7.5 55 19-80 271-330 (331)
474 KOG3535 Adaptor protein Disabl 34.2 1.5E+02 0.0032 20.1 5.8 54 28-88 101-154 (557)
475 PF08954 DUF1900: Domain of un 32.2 93 0.002 17.1 4.9 18 70-87 26-43 (136)
476 TIGR03032 conserved hypothetic 31.4 1.5E+02 0.0032 19.2 10.3 29 79-107 284-315 (335)
477 PF14339 DUF4394: Domain of un 29.4 1.4E+02 0.0031 18.3 8.5 74 7-88 27-106 (236)
478 cd06919 Asp_decarbox Aspartate 29.3 98 0.0021 16.5 2.8 18 77-94 41-58 (111)
479 PRK05449 aspartate alpha-decar 28.6 1.1E+02 0.0023 16.7 2.8 18 77-94 42-59 (126)
480 KOG2109 WD40 repeat protein [G 28.6 83 0.0018 22.6 2.8 33 2-35 311-345 (788)
481 COG4590 ABC-type uncharacteriz 26.0 2.3E+02 0.005 19.7 8.3 29 7-36 221-249 (733)
482 KOG2467 Glycine/serine hydroxy 25.6 89 0.0019 20.8 2.5 20 18-37 340-360 (477)
483 PF14269 Arylsulfotran_2: Aryl 25.2 1.9E+02 0.004 18.3 5.4 39 51-96 146-184 (299)
484 COG1520 FOG: WD40-like repeat 24.7 2E+02 0.0043 18.5 9.4 73 13-93 106-179 (370)
485 PF15644 Tox-PL: Papain fold t 24.6 1.2E+02 0.0025 15.8 2.8 21 19-39 88-109 (111)
486 KOG0918 Selenium-binding prote 23.9 2.4E+02 0.0052 19.1 8.8 34 5-39 310-345 (476)
487 PF14727 PHTB1_N: PTHB1 N-term 23.8 2.4E+02 0.0051 19.0 6.5 56 20-83 146-202 (418)
488 cd01215 Dab Disabled (Dab) Pho 23.4 1.5E+02 0.0032 16.5 6.7 48 29-82 63-110 (139)
489 smart00415 HSF heat shock fact 23.1 98 0.0021 15.9 2.0 14 13-26 22-35 (105)
490 KOG0183 20S proteasome, regula 23.0 55 0.0012 19.7 1.2 10 14-23 10-19 (249)
491 PF07533 BRK: BRK domain; Int 23.0 83 0.0018 13.6 1.5 17 74-90 3-19 (46)
492 PF06739 SBBP: Beta-propeller 22.6 76 0.0016 12.9 2.3 17 9-26 15-31 (38)
493 KOG4656 Copper chaperone for s 22.4 41 0.00088 20.1 0.6 24 13-36 161-184 (247)
494 PF03646 FlaG: FlaG protein; 22.2 1.1E+02 0.0023 15.7 2.1 18 29-46 69-86 (107)
495 PF13964 Kelch_6: Kelch motif 21.7 86 0.0019 13.2 2.7 22 17-38 10-38 (50)
496 COG4831 Roadblock/LC7 domain [ 21.5 1E+02 0.0023 15.9 1.8 14 13-26 18-31 (109)
497 COG4247 Phy 3-phytase (myo-ino 21.3 2.3E+02 0.0049 18.0 3.5 28 16-44 64-92 (364)
498 PF00447 HSF_DNA-bind: HSF-typ 21.3 1.1E+02 0.0023 15.6 1.9 13 13-25 19-31 (103)
499 PRK10115 protease 2; Provision 21.1 3.3E+02 0.0072 19.7 12.6 68 13-84 177-254 (686)
500 KOG1520 Predicted alkaloid syn 21.0 2.7E+02 0.0058 18.6 7.3 104 7-112 115-234 (376)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=3.6e-23 Score=130.78 Aligned_cols=103 Identities=25% Similarity=0.436 Sum_probs=97.4
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
++.||.+.|.| +.|+|+.+++++|+ |.+|++||..+|..++.|.+|.++|.++++||+|. ++++++.|+.|
T Consensus 530 ifaghlsDV~c-v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr-------~LaSg~ed~~I 601 (707)
T KOG0263|consen 530 IFAGHLSDVDC-VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR-------YLASGDEDGLI 601 (707)
T ss_pred hhcccccccce-EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-------eEeecccCCcE
Confidence 46899999998 99999999999999 99999999999999999999999999999999996 88999999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+||+.+|+.+..+..|. .+.++.|+.+|..+
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEE
Confidence 999999999998888877 99999999999876
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-23 Score=123.06 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=89.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||.+.|.+ +.|+|+|..|++|+ |.++++||+.+..+....++|...|.|++|+||+. .+++++.||.|+
T Consensus 111 ~~GH~e~Vl~-~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-------~iASG~~dg~I~ 182 (480)
T KOG0271|consen 111 IAGHGEAVLS-VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-------KIASGSKDGSIR 182 (480)
T ss_pred cCCCCCcEEE-EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-------hhhccccCCeEE
Confidence 6799999998 99999999999998 99999999999988999999999999999999995 777999999999
Q ss_pred EEeCCCCceE-EEEecCC-CEEEEEEcC
Q 033738 81 YWDFSTPELL-KTIDVKF-PIFSMVRGK 106 (112)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~-~v~~~~~~~ 106 (112)
+||.++|+.+ ..+..|. ++.+++|.|
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecc
Confidence 9999988664 6677777 999999986
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.3e-23 Score=122.35 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=95.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
..||...|.. +.||||++++++++ |.+|++|+.++|+.+..|.+|-+.|..++|+.|.+ ++++++.|.+++
T Consensus 363 mtgHq~lVn~-V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-------LlVS~SkDsTLK 434 (480)
T KOG0271|consen 363 MTGHQALVNH-VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-------LLVSGSKDSTLK 434 (480)
T ss_pred hhchhhheee-EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-------EEEEcCCCceEE
Confidence 3689999998 99999999999999 99999999999999999999999999999999986 778999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+|++++.+....+++|. .|+++.|+|||..+
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 99999999989999877 99999999999865
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2e-23 Score=124.86 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=96.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|+||...|.. ++|+|+|++|++++ |.+=++||+.++..+....+|...|.+++|.++|. ++++|+.|..-+
T Consensus 257 l~gH~~RVs~-VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-------L~~tGGlD~~~R 328 (459)
T KOG0272|consen 257 LEGHLARVSR-VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-------LAATGGLDSLGR 328 (459)
T ss_pred hhcchhhhee-eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-------eeeccCccchhh
Confidence 6789999998 99999999999999 99999999999988888899999999999999994 888999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+||+++|+++..+.+|. +|.++.|+|+|..+
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~l 360 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHL 360 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEE
Confidence 99999999999999988 99999999999875
No 5
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6e-21 Score=119.48 Aligned_cols=102 Identities=27% Similarity=0.383 Sum_probs=94.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeC-CCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFST-STGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|...|.. ++|+|+++.+++++ |.++++||+ ..+..++.+.+|...|++++|+|++. .+++++.|+++
T Consensus 199 l~~h~~~v~~-~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-------~i~Sgs~D~tv 270 (456)
T KOG0266|consen 199 LSGHTRGVSD-VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-------LLVSGSDDGTV 270 (456)
T ss_pred ccccccceee-eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-------EEEEecCCCcE
Confidence 3679999998 99999999999999 899999999 55678899999999999999999995 77899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++||++++++...+..|. .+.+++|+++++.+
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence 999999999999999998 99999999999876
No 6
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=7.1e-21 Score=119.15 Aligned_cols=104 Identities=30% Similarity=0.448 Sum_probs=92.9
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+++||...|++ ++|+|+|+.+++|+ |++|++||+++++....+..|...|.+++|++++. ++++++.|+.+
T Consensus 241 ~l~gH~~~v~~-~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-------~l~s~s~d~~i 312 (456)
T KOG0266|consen 241 TLKGHSTYVTS-VAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-------LLVSASYDGTI 312 (456)
T ss_pred EecCCCCceEE-EEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC-------EEEEcCCCccE
Confidence 36899999998 99999999999999 99999999999999999999999999999999995 77789999999
Q ss_pred EEEeCCCCc--eEEEEecCC---CEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPE--LLKTIDVKF---PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~~---~v~~~~~~~~~~~~~ 112 (112)
++||+.++. +...+..+. ++.++.|+|++.+++
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 999999998 555655443 489999999999874
No 7
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=1.9e-20 Score=117.73 Aligned_cols=103 Identities=21% Similarity=0.303 Sum_probs=89.5
Q ss_pred ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738 2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 72 (112)
+.||.+.|.+ ++|+| +++.|++++ |+.|++||+..+ ..+..+.+|...|.+++|+|++. .++++
T Consensus 71 l~GH~~~V~~-v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~------~iLaS 143 (493)
T PTZ00421 71 LLGQEGPIID-VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM------NVLAS 143 (493)
T ss_pred EeCCCCCEEE-EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC------CEEEE
Confidence 5789999998 99999 889999998 999999998754 23567788999999999999863 26779
Q ss_pred eecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 73 ASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 73 ~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++.|+.|++||+.+++.+..+..+. .|.+++|+|+|..+
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lL 183 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLL 183 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEE
Confidence 9999999999999998888887766 89999999999876
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=108.45 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=91.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.||++++.+ +.|-+|++ |++++ |.++.+||+++++.+..|.+|.+.|.+++++| +++ .+++++-|+..
T Consensus 141 l~gHtgylSc-C~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-------tFvSg~cD~~a 211 (343)
T KOG0286|consen 141 LAGHTGYLSC-CRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-------TFVSGGCDKSA 211 (343)
T ss_pred ecCccceeEE-EEEcCCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-------eEEecccccce
Confidence 6899999998 88988655 55665 99999999999999999999999999999999 564 77899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++||++.+.+.+++..|. .|++++|.|+|.-+
T Consensus 212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred eeeeccCcceeEeecccccccceEEEccCCCee
Confidence 999999999999999987 99999999999754
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=108.91 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=95.4
Q ss_pred ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|.||.+.|.+ ++++| +++.+++|+ |...++||++.+.....|.+|+..|+.+.|.|++. -+++|+.|++.
T Consensus 182 f~GH~gDV~s-lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-------afatGSDD~tc 253 (343)
T KOG0286|consen 182 FHGHTGDVMS-LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-------AFATGSDDATC 253 (343)
T ss_pred ecCCcccEEE-EecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-------eeeecCCCcee
Confidence 6799999998 99999 899999998 99999999999999999999999999999999995 68899999999
Q ss_pred EEEeCCCCceEEEEecCC---CEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKF---PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~ 112 (112)
|+||++....+..+.... ++++++|+..|+++|
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence 999999988888887654 899999999999886
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=4.2e-21 Score=115.11 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=93.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
.+||...|.+ ++|.+||.++++|+ |..-++||++++.++-.+.+|..+|..++|+|+|. .++||+.|++++
T Consensus 299 QEGHs~~v~~-iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-------~lATgs~Dnt~k 370 (459)
T KOG0272|consen 299 QEGHSKGVFS-IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-------HLATGSSDNTCK 370 (459)
T ss_pred hcccccccce-eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce-------EEeecCCCCcEE
Confidence 3689999998 99999999999999 99999999999999999999999999999999994 678999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcC-CCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGK-KGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~ 111 (112)
+||++....+.++..|. -|..+.|.| .|.+|
T Consensus 371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred EeeecccccceecccccchhhheEecccCCeEE
Confidence 99999988899999888 899999998 44443
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.85 E-value=2.7e-20 Score=113.05 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=95.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCc---cceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPA---TKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~d~ 77 (112)
+.||.+.|.+ +.|+|.|.+|++++ |+++++|..........+..|...+..+.|+|+++.. ..-. .+++++.|+
T Consensus 355 ~~GH~g~V~a-lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~-~l~sas~ds 432 (524)
T KOG0273|consen 355 FIGHHGEVNA-LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL-MLASASFDS 432 (524)
T ss_pred eecccCceEE-EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCc-eEEEeecCC
Confidence 6789999998 99999999999999 8999999988777888999999999999999976411 1112 678999999
Q ss_pred cEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 78 TIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++++||+..|.++.++..|. +|++++|+|+|+++
T Consensus 433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred eEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999997776 99999999999986
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.84 E-value=1.9e-20 Score=118.65 Aligned_cols=102 Identities=23% Similarity=0.309 Sum_probs=96.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
++||..+|.+ +.|+|-|-++++++ |++-++|......+.+.+.+|.+.|.|+.|+|+.. |+++|+.|.++|
T Consensus 489 y~GH~~PVwd-V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~-------Y~aTGSsD~tVR 560 (707)
T KOG0263|consen 489 YKGHLAPVWD-VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN-------YVATGSSDRTVR 560 (707)
T ss_pred ecCCCcceee-EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc-------ccccCCCCceEE
Confidence 5789999998 99999999999999 99999999998888999999999999999999994 999999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+||..+|..++.+.+|. +|.+++|+|+|.++
T Consensus 561 lWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 561 LWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred EEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 99999999999999987 99999999999987
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-19 Score=104.23 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=89.1
Q ss_pred CCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 5 GRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 5 h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
|.+.|.+ ++|+|+ ...+++++ |++|++||+++-+....+.+|.+.++.+++||||. ++++|+.|+.+.+
T Consensus 147 ~~~WVsc-vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-------lcasGgkdg~~~L 218 (315)
T KOG0279|consen 147 HREWVSC-VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-------LCASGGKDGEAML 218 (315)
T ss_pred CcCcEEE-EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-------EEecCCCCceEEE
Confidence 3677888 999998 46788888 99999999998887889999999999999999995 7889999999999
Q ss_pred EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
||++.++++..+.....|.+++|+|+-..|
T Consensus 219 wdL~~~k~lysl~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 219 WDLNEGKNLYSLEAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred EEccCCceeEeccCCCeEeeEEecCCceeE
Confidence 999999999999888899999999986554
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=2e-19 Score=103.35 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=87.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|+||...|.. +..++||++.++++ |+.+++||+.+++..+.|.+|...|.+++++++.+ .+++++.|.++.
T Consensus 59 ~~GHsH~v~d-v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-------qivSGSrDkTik 130 (315)
T KOG0279|consen 59 LTGHSHFVSD-VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-------QIVSGSRDKTIK 130 (315)
T ss_pred eeccceEecc-eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-------eeecCCCcceee
Confidence 6899999998 99999999999999 99999999999999999999999999999999994 566999999999
Q ss_pred EEeCCCCceEEEEecC--C-CEEEEEEcCCC
Q 033738 81 YWDFSTPELLKTIDVK--F-PIFSMVRGKKG 108 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~ 108 (112)
+|+.. |.+..++..+ . +|.+++|+|+.
T Consensus 131 lwnt~-g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 131 LWNTL-GVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred eeeec-ccEEEEEecCCCcCcEEEEEEcCCC
Confidence 99987 5565555443 3 89999999984
No 15
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=5.4e-19 Score=112.34 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=87.0
Q ss_pred ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCc--------eeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738 2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGL--------QISSLEGHTAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
+.+|.+.|.+ ++|+|+ ++.|++++ |+.|++||+.++. ....+.+|...|.+++|+|++. .+++
T Consensus 70 L~gH~~~V~~-lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~------~iLa 142 (568)
T PTZ00420 70 LKGHTSSILD-LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY------YIMC 142 (568)
T ss_pred EcCCCCCEEE-EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC------eEEE
Confidence 5789999998 999997 78999998 9999999997532 2335677889999999999885 2456
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++.|+.+++||+++++.+..+..+..+.+++|+|+|..+
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL 182 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE
Confidence 8999999999999999887777666689999999999876
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.82 E-value=3.8e-20 Score=110.81 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=92.8
Q ss_pred ccCCC-CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGR-SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~-~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+++|. ..|.+ ++|+|+...+++++ |++|++||....+....+.+|.-.|.+++|+|... .+++++.|..|
T Consensus 175 ~~ahh~eaIRd-lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-------LiasgskDnlV 246 (464)
T KOG0284|consen 175 IQAHHAEAIRD-LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-------LIASGSKDNLV 246 (464)
T ss_pred hhHhhhhhhhe-eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-------eeEEccCCcee
Confidence 34554 88998 99999999999998 89999999988877788899999999999999884 78899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
++||.++|.|+.++..|. .|..+.|+|++++|.
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll 280 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL 280 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence 999999999999998887 999999999998763
No 17
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=5e-18 Score=106.98 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=86.7
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|...|.+ ++|+|++ +.|++++ |+.|++||+++++....+..|...|.+++|+|++. ++++++.|+.+
T Consensus 121 L~gH~~~V~~-l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-------lLatgs~Dg~I 192 (493)
T PTZ00421 121 LQGHTKKVGI-VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-------LLCTTSKDKKL 192 (493)
T ss_pred ecCCCCcEEE-EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-------EEEEecCCCEE
Confidence 5689999998 9999986 6888888 99999999999888888888999999999999995 77899999999
Q ss_pred EEEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 111 (112)
++||+++++.+..+..|. ....+.|.+++..+
T Consensus 193 rIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 193 NIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999998888877665 34456777766544
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=3.3e-18 Score=109.05 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=91.6
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+||...+.+ ++++|||+++++|+ |+.|++||.+++-++..|..|...|+.+.|+..+. .+++.+.||+++.
T Consensus 347 QgH~~~i~~-l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-------~llssSLDGtVRA 418 (893)
T KOG0291|consen 347 QGHSDRITS-LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-------VLLSSSLDGTVRA 418 (893)
T ss_pred cccccceee-EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-------EEEEeecCCeEEe
Confidence 679999998 99999999999999 89999999999999999999999999999999995 6679999999999
Q ss_pred EeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 111 (112)
||+..++..+++..+. ...+++..|.|..+
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 9999999999998877 45677777878765
No 19
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=2.4e-18 Score=102.48 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=83.9
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
|.+|+..|.. +.|||.. ..|++++ |++|++||++.+.. ....+.|.+.|+.+.|+.... ++++|+.||
T Consensus 253 f~gH~~SVED-LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-------lLasG~DdG 324 (440)
T KOG0302|consen 253 FTGHTKSVED-LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-------LLASGGDDG 324 (440)
T ss_pred ccccccchhh-hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-------eeeecCCCc
Confidence 5679999998 9999976 5667777 99999999988622 223377899999999998874 788999999
Q ss_pred cEEEEeCCC---CceEEEEecCC-CEEEEEEcCCCc
Q 033738 78 TIKYWDFST---PELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 78 ~i~~~~~~~---~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
.+++||++. +.++..++.|. +|+++.|+|...
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC
Confidence 999999875 67888999887 999999998654
No 20
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.79 E-value=9.9e-18 Score=96.23 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=96.0
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+++||...+.. ++++.+|.+|.+++ |....+|-..+|+.+..+.+|.+.|++++..-+.. .+++++.|.++
T Consensus 5 ~l~GHERplTq-iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~-------~liTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQ-IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK-------HLITGSADQTA 76 (327)
T ss_pred ccccCccccce-EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc-------eeeecccccee
Confidence 47899999998 99999999999999 99999999888999999999999999999988774 67799999999
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++||+++|+++.+++.+.+|..+.|+++|+++
T Consensus 77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLI 108 (327)
T ss_pred EEEEcCCCcEEEEeecCCeeEEEeeccCCcEE
Confidence 99999999999999999999999999999875
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=1.5e-18 Score=109.99 Aligned_cols=103 Identities=25% Similarity=0.315 Sum_probs=95.5
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+|.||+..|.+ +.|+|..+.+++++ |++|++|.+++..++..+.+|...|..+.|-.++. .+++++.||.+
T Consensus 500 vLsGH~RGvw~-V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~-------qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWC-VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK-------QLISAGADGLI 571 (775)
T ss_pred EeeCCccceEE-EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc-------EEEeccCCCcE
Confidence 47899999998 99999999999999 99999999999999999999999999999998884 66699999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++|+++++.|+.++..|. .|++++-+|.+.++
T Consensus 572 KlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 572 KLWNIKTNECEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred EEEeccchhhhhhhhhccceeEEEeecCcccee
Confidence 999999999999999988 99999998887654
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.78 E-value=6.8e-19 Score=107.13 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=93.3
Q ss_pred ccCCCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+.||+..|.+ +.|.| .+.+|++++ |+.|++|++-. +++++.+.+|..+|..++|++++. -+++++.|+.
T Consensus 210 ~~gH~kgvsa-i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-------~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSA-IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-------SFLSASFDRF 281 (503)
T ss_pred ccCCccccch-hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-------eeeeeeccee
Confidence 6799999998 99999 788999999 99999999865 788999999999999999999995 6669999999
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++||.++|+++..+.....++++.|+|++..+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNI 314 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcE
Confidence 999999999999999998899999999998433
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.78 E-value=1e-17 Score=102.01 Aligned_cols=102 Identities=23% Similarity=0.349 Sum_probs=92.2
Q ss_pred ccCCCCCcCCCeEEcCCC---------CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738 2 IRGGRSYVSSPPAFSNDV---------KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~---------~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
|++|...++. +.|+|+| ..+++++ |.+|++||+..+.++..|..|+.+|.+++|+|+++ |++
T Consensus 397 l~~Hskei~t-~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~-------ylA 468 (524)
T KOG0273|consen 397 LQAHSKEIYT-IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR-------YLA 468 (524)
T ss_pred hhhhccceee-EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCc-------EEE
Confidence 5678888887 9999976 3466776 99999999999999999999999999999999995 899
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+|+.|+.+.+|+.++++..+.......|..++|+-+|+++
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKL 508 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEE
Confidence 9999999999999999999998888899999999999765
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.77 E-value=1.7e-18 Score=102.77 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=94.6
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+++||.+.|.+ +++.|..+++++|+ |+++++||+.+++....+.+|...|..+++|+..+ |+.+++.|+++
T Consensus 146 Vi~gHlgWVr~-vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp-------YlFs~gedk~V 217 (460)
T KOG0285|consen 146 VISGHLGWVRS-VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP-------YLFSAGEDKQV 217 (460)
T ss_pred hhhhccceEEE-EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc-------eEEEecCCCee
Confidence 47899999998 99999999999999 99999999999998889999999999999999986 88899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+.||++..+.++...+|. .|++++.+|.-..|
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl 250 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVL 250 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeE
Confidence 999999999988888876 89999999876554
No 25
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.3e-18 Score=109.95 Aligned_cols=101 Identities=20% Similarity=0.317 Sum_probs=89.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
++||.+.|.+ +.||.++ +|++++ |.+|++|++....+++.|. |...|+|++|+|..+ .|+++|+-|+.+|
T Consensus 365 f~GHt~DILD-lSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD------ryFiSGSLD~KvR 435 (712)
T KOG0283|consen 365 FKGHTADILD-LSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD------RYFISGSLDGKVR 435 (712)
T ss_pred hhccchhhee-cccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC------CcEeecccccceE
Confidence 6899999999 9998754 666777 9999999999888888876 889999999999765 4888999999999
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
||++...+.+.....+.-|++++|.|+|++.
T Consensus 436 iWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 436 LWSISDKKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred EeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence 9999988888777777899999999999864
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=5.5e-18 Score=100.46 Aligned_cols=109 Identities=24% Similarity=0.270 Sum_probs=94.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCcccee----E-----EEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKIL----S-----YCW 71 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~-----~~~ 71 (112)
+.+|.+.|.. ++.+.||..+++++ |.++++|-..++++...+..|+.+|.+++|.|... ..-+. + ++.
T Consensus 231 ~~~h~ewvr~-v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 231 FPGHSEWVRM-VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YPSISEATGSTNGGQVLG 308 (406)
T ss_pred ccCchHhEEE-EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-CcchhhccCCCCCccEEE
Confidence 6788888887 99999999999999 99999999999988889999999999999988542 00000 0 667
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
+++.|++|++||+.+|.++.++..|. +|..++|+|.|++|+
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE
Confidence 88999999999999999999999988 999999999999985
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=94.56 Aligned_cols=103 Identities=25% Similarity=0.328 Sum_probs=89.9
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD 76 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 76 (112)
+|+||.+.|.+ ++|+++|++|++++ |.+|.+|.+... .+...+.+|...|..+.|+|... ++++++.|
T Consensus 100 ~lEGHEnEVK~-Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-------lL~S~SYD 171 (312)
T KOG0645|consen 100 TLEGHENEVKC-VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-------LLFSCSYD 171 (312)
T ss_pred eeeccccceeE-EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-------eeEEeccC
Confidence 37899999998 99999999999999 999999998743 45678889999999999999885 78899999
Q ss_pred CcEEEEeCC---CCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 77 ETIKYWDFS---TPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 77 ~~i~~~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+|++|+.. +-.+.+++..+. .|++++|++.|..+
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence 999999766 236788888887 99999999998654
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=8.1e-18 Score=95.27 Aligned_cols=103 Identities=16% Similarity=0.273 Sum_probs=93.9
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+|..++++|.. ++++-||++.++++ |.++++|+...+..++.+.+|..+|..++.+.+.. -+++++.|..+
T Consensus 12 ~l~~~qgaV~a-vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-------kf~s~GgDk~v 83 (307)
T KOG0316|consen 12 ILDCAQGAVRA-VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-------KFASCGGDKAV 83 (307)
T ss_pred eecccccceEE-EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-------ccccCCCCceE
Confidence 36778999998 99999999998887 99999999999999999999999999999988883 66799999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+||+.+|+..+.+..|. .|+.++|+.+...+
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV 116 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence 999999999999999988 99999999887655
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=2.3e-17 Score=93.98 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=84.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
++.|.+++.. +.+|||+++|++++ |.++++|+.+.. +....+++|+..++.++||.++. |+++++.|+..
T Consensus 211 ~~ah~~~il~-C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~-------YlvTassd~~~ 282 (311)
T KOG0315|consen 211 FQAHNGHILR-CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE-------YLVTASSDHTA 282 (311)
T ss_pred eecccceEEE-EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCcc-------EEEecCCCCce
Confidence 5779999997 99999999999998 999999999876 44567788999999999999995 89999999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEc
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRG 105 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~ 105 (112)
++|+++.++.+.....|. ...+++.+
T Consensus 283 rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eecccccCceeeecCCcccccEEEEee
Confidence 999999999999988876 66666554
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.76 E-value=3.3e-17 Score=101.09 Aligned_cols=85 Identities=31% Similarity=0.451 Sum_probs=74.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc---ccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE---GHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
+..|...|.+ ++++|||.++++.+ |+.+.+||-.+++.+..+. .|.+.|.+++|+||+. .+++++.|.
T Consensus 186 ~r~HskFV~~-VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-------~~~T~SaDk 257 (603)
T KOG0318|consen 186 FREHSKFVNC-VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-------QFLTVSADK 257 (603)
T ss_pred ccccccceee-EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-------eEEEecCCc
Confidence 3568889998 99999999999998 9999999999999888887 7999999999999994 667999999
Q ss_pred cEEEEeCCCCceEEEEe
Q 033738 78 TIKYWDFSTPELLKTID 94 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~ 94 (112)
++++||+.+.++++++.
T Consensus 258 t~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWP 274 (603)
T ss_pred eEEEEEeeccceEEEee
Confidence 99999988776655544
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.75 E-value=1.2e-17 Score=96.96 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=88.9
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+++|.++|.. +.|.+|++.+++++ |.+++.||.++|+.++.++.|..-|+.+.-+.-+. -.+.+++.|++++
T Consensus 86 lkgHsgAVM~-l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~------~lv~SgsdD~t~k 158 (338)
T KOG0265|consen 86 LKGHSGAVME-LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP------QLVCSGSDDGTLK 158 (338)
T ss_pred eccccceeEe-eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC------eEEEecCCCceEE
Confidence 6899999999 99999999999998 99999999999999999999999888887444443 2556899999999
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+||++++.+++++.....++++.|..++..+
T Consensus 159 l~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEeecccchhhccccceeEEEEEecccccce
Confidence 9999999999888777788899998777544
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.2e-17 Score=93.01 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=88.3
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
.+|+..|.. ++|+|.|++|++++ |.++.+|.-.. .+++..+.+|+.+|.+++|+++|. +++++++|..+
T Consensus 58 ~~hkrsVRs-vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-------~LATCSRDKSV 129 (312)
T KOG0645|consen 58 DGHKRSVRS-VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-------YLATCSRDKSV 129 (312)
T ss_pred ccchheeee-eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-------EEEEeeCCCeE
Confidence 368899997 99999999999999 99999997654 367788999999999999999996 99999999999
Q ss_pred EEEeCCCC---ceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTP---ELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
-+|....+ ++...+..|. .|..+.|+|....||
T Consensus 130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 99988744 5777787777 899999999766653
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.75 E-value=2.3e-17 Score=98.08 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=90.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||...|.+ ++.+|.-..|++++ |..+++||+++...+..+.+|..+|..+.+.|..+ .+++++.|++|+
T Consensus 231 YhGHlS~V~~-L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------qvit~S~D~tvr 302 (460)
T KOG0285|consen 231 YHGHLSGVYC-LDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------QVITGSHDSTVR 302 (460)
T ss_pred hccccceeEE-EeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-------ceEEecCCceEE
Confidence 4689999998 99999999999999 99999999999999999999999999999988775 566999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
+||++.|+...++..|. .+.+++.+|...
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~ 332 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKEN 332 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchh
Confidence 99999999988888877 899999998654
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=5.9e-17 Score=96.16 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=88.3
Q ss_pred ccCCCCCcCCCeEEcCCC---------------CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccc
Q 033738 2 IRGGRSYVSSPPAFSNDV---------------KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATK 65 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~---------------~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 65 (112)
+.+|.-.|.+ ++|.|.. +.+.+++ |++|++||++++.++..+.+|...|..++|+|.|.
T Consensus 273 lR~hEh~vEc-i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk---- 347 (406)
T KOG0295|consen 273 LREHEHPVEC-IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK---- 347 (406)
T ss_pred hhccccceEE-EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe----
Confidence 4567767776 7776532 4778888 99999999999999999999999999999999996
Q ss_pred eeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 66 ILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 66 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|++++..|+++++||+++++|..++..|. -+.++.|+.+..++
T Consensus 348 ---yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 348 ---YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ---EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 88899999999999999999999998877 89999998776554
No 35
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-17 Score=96.32 Aligned_cols=93 Identities=24% Similarity=0.228 Sum_probs=85.4
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 87 (112)
..+ +.|++-|.+|+.|. ||.+.+||+.+....+.+..|..+|++++||++|+ .+++++.|..+.+||+..|
T Consensus 26 a~~-~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-------~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AEC-CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-------KLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cce-EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-------EeeeecCCceeEEEeccCC
Confidence 455 89999999999998 99999999999887788999999999999999995 5669999999999999999
Q ss_pred ceEEEEecCCCEEEEEEcCCCc
Q 033738 88 ELLKTIDVKFPIFSMVRGKKGF 109 (112)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~ 109 (112)
.++..+...++|+...|+|...
T Consensus 98 s~l~rirf~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKR 119 (405)
T ss_pred CceeEEEccCccceeeeccccC
Confidence 9999999999999999998654
No 36
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.74 E-value=4.3e-17 Score=98.65 Aligned_cols=95 Identities=24% Similarity=0.335 Sum_probs=85.3
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 87 (112)
+.+ ..|+|||..+.+|. |+.+++||+..+.....|.+|.++|..++|+.+|. |+++++.|+.+++||++.-
T Consensus 350 ~ts-~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-------~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 350 YTS-AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-------WLATAADDGSVKLWDLRKL 421 (506)
T ss_pred eEE-eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce-------EEEEEecCCeEEEEEehhh
Confidence 444 89999999999999 99999999999888899999999999999999994 7889999999999999988
Q ss_pred ceEEEEecCC--CEEEEEEcCCCcEe
Q 033738 88 ELLKTIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 88 ~~~~~~~~~~--~v~~~~~~~~~~~~ 111 (112)
+...++..+. .+.++.|.+.|.++
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeE
Confidence 7777776655 69999999999876
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.6e-17 Score=100.13 Aligned_cols=103 Identities=23% Similarity=0.354 Sum_probs=89.2
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD 76 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 76 (112)
+|+.|++.|.- +.||++|++||+++ |.+.-+|++..- +....+.+|..+|..+.||||.+ ++++|+.+
T Consensus 219 il~~htdEVWf-l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-------yLlaCg~~ 290 (519)
T KOG0293|consen 219 ILQDHTDEVWF-LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-------YLLACGFD 290 (519)
T ss_pred hHhhCCCcEEE-EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-------eEEecCch
Confidence 46789999998 99999999999999 998888886432 34577889999999999999996 88899999
Q ss_pred CcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCcEe
Q 033738 77 ETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGFAV 111 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 111 (112)
..+.+||..+|.+...++.. ..+.+.+|.|||..+
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~ 327 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF 327 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCcee
Confidence 99999999999998887765 389999999999754
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.7e-17 Score=106.03 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--------------------------------C------------
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--------------------------------G------------ 38 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--------------------------------~------------ 38 (112)
+|.+.|.+ +.||+||++||+|+ |+.|++|.+.. .
T Consensus 265 ah~gaIw~-mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWA-MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEE-EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 79999998 99999999999999 99999997643 0
Q ss_pred ----------------ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEE
Q 033738 39 ----------------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSM 102 (112)
Q Consensus 39 ----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~ 102 (112)
+++..+.+|.+.|..+.|+.++ ++++++-|.++|+|++....|+..+.+..-|+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--------fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--------FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--------eeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 1345567899999999999988 7789999999999999999999999988899999
Q ss_pred EEcCCCc
Q 033738 103 VRGKKGF 109 (112)
Q Consensus 103 ~~~~~~~ 109 (112)
+|+|-..
T Consensus 416 aFnPvDD 422 (712)
T KOG0283|consen 416 AFNPVDD 422 (712)
T ss_pred EecccCC
Confidence 9999543
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=9.5e-17 Score=102.07 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=92.1
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
.|...|++ ++++|+..++++|+ |.+.++|+++.......+.+|...++++.|+|... .+++++.|.++++|
T Consensus 461 aHdKdIN~-Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-------~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 461 AHDKDINC-VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-------LLATCSGDKTVKIW 532 (775)
T ss_pred hhcccccc-eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-------eeEeccCCceEEEE
Confidence 47888998 99999999999999 99999999998888899999999999999999875 67899999999999
Q ss_pred eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+.+..|+.++.+|. .|....|-.+|+.+
T Consensus 533 ~is~fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 533 SISTFSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred EeccceeeeeecCccceeEeeeeeeCCcEE
Confidence 999999999999887 89989998887755
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.73 E-value=7e-18 Score=101.28 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=93.8
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+|.||...|.+ ++|+|.-.++++++ |..|++||.+++.++..+..|...|..+.|+++++ ++++++.|..+
T Consensus 217 vL~GHgwdVks-vdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-------~Llt~skD~~~ 288 (464)
T KOG0284|consen 217 VLRGHGWDVKS-VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-------WLLTGSKDQSC 288 (464)
T ss_pred eeccCCCCcce-eccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-------eeEEccCCceE
Confidence 36789999998 99999999999999 89999999999999999999999999999999995 88899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+++|+++.+.++.++.|. .+.++.|+|-.+-|
T Consensus 289 kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 289 KVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred EEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 999999888888888777 99999999865544
No 41
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=91.13 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=85.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.+|+..|.. +.|..+|+.+++|+ ||++++||++...+.+.+. +..+|+++..+|+.. -++++..+|.|+
T Consensus 79 ~e~h~kNVta-VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-------eLis~dqsg~ir 149 (311)
T KOG0315|consen 79 FEGHTKNVTA-VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-------ELISGDQSGNIR 149 (311)
T ss_pred EeccCCceEE-EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-------eEEeecCCCcEE
Confidence 6789999997 99999999999999 9999999999866555555 569999999999883 556999999999
Q ss_pred EEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 111 (112)
+||+.+..+...+..+. +++++...|||.++
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence 99999877765554333 89999999999876
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.2e-17 Score=105.00 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=92.5
Q ss_pred CccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 1 MIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+++||..+|.+ ++|.|. .+.+++++ |++|++|.+.+..+...+.+|+..|+|+.+-+.++ + -++++++.|..
T Consensus 135 tfeGH~HyVMq-v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd--k---pylIsgaDD~t 208 (794)
T KOG0276|consen 135 TFEGHEHYVMQ-VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD--K---PYLISGADDLT 208 (794)
T ss_pred EEcCcceEEEE-EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC--c---ceEEecCCCce
Confidence 37899999998 999995 58999999 99999999988888889999999999999987652 0 16779999999
Q ss_pred EEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+++||++++.|++++.+|. .|..+.|+|.-..+
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 9999999999999999987 89999999876544
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.71 E-value=7.2e-16 Score=90.03 Aligned_cols=102 Identities=30% Similarity=0.441 Sum_probs=89.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+++|.+.|.+ ++|+|+++.+++++ ++.+++|+..+++....+..+...+..+.|+|++. ++++++.++.++
T Consensus 5 ~~~h~~~i~~-~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~~~~i~ 76 (289)
T cd00200 5 LKGHTGGVTC-VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT-------YLASGSSDKTIR 76 (289)
T ss_pred hcccCCCEEE-EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC-------EEEEEcCCCeEE
Confidence 6789999998 99999999999998 89999999988877777778888888999999984 677899999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+||+.+++.+..+..+. .+.++.|+|+++++
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence 99999887777777666 89999999987654
No 44
>PTZ00420 coronin; Provisional
Probab=99.71 E-value=9.3e-16 Score=97.84 Aligned_cols=101 Identities=7% Similarity=0.040 Sum_probs=80.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEE-EEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRL-LVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|...|.+ ++|+|++..+ ++++ |+.|++||+.+++....+. +...+.+++|+|++. ++++++.|+.+
T Consensus 121 L~gH~~~V~s-Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-------lLat~s~D~~I 191 (568)
T PTZ00420 121 LKGHKKKISI-IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-------LLSGTCVGKHM 191 (568)
T ss_pred eecCCCcEEE-EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-------EEEEEecCCEE
Confidence 4678899998 9999998754 6777 9999999999887666554 557799999999995 67788999999
Q ss_pred EEEeCCCCceEEEEecCC-CE-----EEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PI-----FSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v-----~~~~~~~~~~~~ 111 (112)
++||+++++.+..+..|. .+ ....|++++.++
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~I 229 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYI 229 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEE
Confidence 999999999888887765 32 222345676654
No 45
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.71 E-value=1.1e-16 Score=104.83 Aligned_cols=103 Identities=26% Similarity=0.286 Sum_probs=90.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|.+|.+.|.+ ++|+|++.+|++++ |++|.+|+..+.+.+..+.+|.+.|..+.|.|.|. |+++-+.|++++
T Consensus 125 l~~H~~DV~D-v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-------y~ASqsdDrtik 196 (942)
T KOG0973|consen 125 LRGHDSDVLD-VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-------YFASQSDDRTLK 196 (942)
T ss_pred EecCCCccce-eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC-------eeeeecCCceEE
Confidence 6789999999 99999999999999 99999999999988999999999999999999996 999999999999
Q ss_pred EEeCCCCceEEEEecC-------CCEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPELLKTIDVK-------FPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~ 112 (112)
+|+..+-.....+..+ .-...+.|+|||++|.
T Consensus 197 vwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 197 VWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred EEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 9997664444444322 2578899999999873
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=1.9e-16 Score=90.78 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=93.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+++|...-.| +.|+|+|+++++|+ |..+.+||++.--+.+.+..+.-+|..+.|+.+++ ++++++.|..|-
T Consensus 185 i~AH~snCic-I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~-------~lASaSEDh~ID 256 (313)
T KOG1407|consen 185 IKAHPSNCIC-IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR-------MLASASEDHFID 256 (313)
T ss_pred cccCCcceEE-EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc-------eeeccCccceEE
Confidence 5788877777 99999999999999 99999999988878888998999999999999996 888999999999
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+-+.++|..+..++...+...++|+|....|
T Consensus 257 IA~vetGd~~~eI~~~~~t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 257 IAEVETGDRVWEIPCEGPTFTVAWHPKRPLL 287 (313)
T ss_pred eEecccCCeEEEeeccCCceeEEecCCCcee
Confidence 9999999999999988899999999987654
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=98.29 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=83.3
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee--------eccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS--------SLEGHTAPVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
....+.| ..|+|||++|++|+ ||.|.+|+..+|+.-+ ++--+...|.|+.|+.|.. .+++|+-
T Consensus 212 ~KSh~Ec-A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-------MlAsGsq 283 (508)
T KOG0275|consen 212 QKSHVEC-ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-------MLASGSQ 283 (508)
T ss_pred cccchhh-eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-------HhhccCc
Confidence 3566777 99999999999999 9999999998876432 2233677899999999984 6779999
Q ss_pred CCcEEEEeCCCCceEEEEe-cCC-CEEEEEEcCCCcEe
Q 033738 76 DETIKYWDFSTPELLKTID-VKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 76 d~~i~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~ 111 (112)
||.|++|.+++|.|++.+. .|. .|.++.|+.|+..+
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sqi 321 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQI 321 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchh
Confidence 9999999999999999987 455 99999999988654
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-16 Score=99.25 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=91.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee--cCCc
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS--LDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~ 78 (112)
+.+|...|-. ++|++|++.+++|+ |+.+.+||....+++..+..|.+.|..++|+|-.. .++|+|+ .|+.
T Consensus 297 ~~~H~qeVCg-Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~------~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 297 LQGHRQEVCG-LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS------GLLATGGGSADRC 369 (484)
T ss_pred hhcccceeee-eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc------CceEEcCCCcccE
Confidence 5679989987 99999999999999 99999999977778889999999999999999765 3556664 6899
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
|++||..+|..+..+.....|.++.|++..+.+
T Consensus 370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi 402 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKEL 402 (484)
T ss_pred EEEEEcCCCcEecccccCCceeeEEEcCCCCEE
Confidence 999999999999999999999999999988654
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=3e-16 Score=100.35 Aligned_cols=102 Identities=22% Similarity=0.378 Sum_probs=78.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC--------------------------------------------
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-------------------------------------------- 36 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~-------------------------------------------- 36 (112)
|..|+..|.. +.|+..|+.+++.+ ||+|+.||+.
T Consensus 388 FteHts~Vt~-v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 388 FTEHTSGVTA-VQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred eccCCCceEE-EEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 4556666665 66666666666666 6666666554
Q ss_pred CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC-ceEEEEecCCCEEEEEEcCCCcEe
Q 033738 37 TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 37 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+|+.+..+.+|+++|.+++|+|.+. .++++++|.+|++||+-.. ..+.++.....+..++|.|+|+.+
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~~~~-------~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSPDGS-------LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred cCeeeehhcCCCCcceeeEEccccC-------eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeE
Confidence 5556677789999999999999995 7889999999999998643 355667767799999999999865
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=1.7e-16 Score=95.93 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=86.0
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCC--CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
+.+|...|.. ++|++-. .++++++ |+.+.+||+++ .+.......|.+++.|++|+|-+. .++++++.|+
T Consensus 223 ~~~h~~~VeD-V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~------~ilAT~S~D~ 295 (422)
T KOG0264|consen 223 FSGHEDVVED-VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE------FILATGSADK 295 (422)
T ss_pred eecCCcceeh-hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC------ceEEeccCCC
Confidence 6789999998 9999965 6667777 89999999994 455567778999999999999875 3678999999
Q ss_pred cEEEEeCCC-CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 78 TIKYWDFST-PELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 78 ~i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++++||+++ ..++.++..|. .|..+.|+|..+.+
T Consensus 296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred cEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence 999999997 35677777777 99999999987654
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1e-16 Score=102.38 Aligned_cols=103 Identities=22% Similarity=0.301 Sum_probs=95.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|.||.-+|.+ +.+|||++.++||+ |..|++|-++-|.+-+.+..|+..|.++.|-|+.. .+.+++.|+.++
T Consensus 546 LYGHkLPV~s-mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~-------~FFt~gKD~kvK 617 (888)
T KOG0306|consen 546 LYGHKLPVLS-MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH-------LFFTCGKDGKVK 617 (888)
T ss_pred ecccccceeE-EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce-------eEEEecCcceEE
Confidence 6899999998 99999999999999 99999999999999999999999999999999874 567999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
-||-.+-++++++..|. .+++++..|+|.+++
T Consensus 618 qWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred eechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 99988888999998877 999999999998763
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.70 E-value=3.5e-16 Score=90.99 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=81.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|.+.|.. +.|+|+|..|++++ |..|.+|+.. .-+....+++|.+.|..+.|.++++ .+++++.|.++
T Consensus 43 l~gh~geI~~-~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s-------~i~S~gtDk~v 114 (338)
T KOG0265|consen 43 LPGHKGEIYT-IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS-------HILSCGTDKTV 114 (338)
T ss_pred cCCCcceEEE-EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC-------EEEEecCCceE
Confidence 5789999998 99999999999999 9999999964 3445667789999999999999994 67799999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEE
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMV 103 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~ 103 (112)
+.||.++|++++.++.|. -++++.
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred EEEecccceeeehhccccceeeecC
Confidence 999999999999998887 444443
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.70 E-value=3.2e-17 Score=99.99 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=88.9
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||...|.+ ++|+++|..+++++ |+.+++||+++|+++..+.. ...+.|+.++|++. ..+++|+.|+.|+
T Consensus 254 f~gH~k~Vrd-~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~------n~fl~G~sd~ki~ 325 (503)
T KOG0282|consen 254 FKGHRKPVRD-ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQ------NIFLVGGSDKKIR 325 (503)
T ss_pred hhcchhhhhh-hhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCC------cEEEEecCCCcEE
Confidence 6789999998 99999999999999 99999999999998887763 45568999999984 2667999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.||+++++.++....|. .+..+.|-++|+.+
T Consensus 326 ~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred EEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 99999999888877776 88889998888764
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.69 E-value=1.2e-15 Score=90.64 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=91.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|+.|++.|++ ++.+|+.+++++|+ |..-++|++.++.....+.+|...|.++.|+.++. ++++++-+|.++
T Consensus 60 F~~H~~svFa-vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt-------lLATGdmsG~v~ 131 (399)
T KOG0296|consen 60 FDKHTDSVFA-VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT-------LLATGDMSGKVL 131 (399)
T ss_pred hhhcCCceEE-EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce-------EEEecCCCccEE
Confidence 6789999998 99999889999998 89999999999998899999999999999999994 899999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+|+..+|.....+.+.. .+.-+.|+|.+..+
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL 163 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEE
Confidence 99999998887776444 77888999977765
No 55
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=1.4e-15 Score=92.12 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=82.5
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
.++|.+.+.+ ++|+|-+ ..||+++ |++|.+||++.. +++..+.+|...|.++.|+|... .++++++.|+.
T Consensus 268 ~~ah~~~vn~-~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e------tvLASSg~D~r 340 (422)
T KOG0264|consen 268 VKAHSAEVNC-VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE------TVLASSGTDRR 340 (422)
T ss_pred ccccCCceeE-EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC------ceeEecccCCc
Confidence 3679999998 9999965 6778888 999999999874 56788999999999999999876 47789999999
Q ss_pred EEEEeCCCC--------------ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTP--------------ELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~--------------~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+.+||+..- +.+..-.+|. .|..+.|+|+...+
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE
Confidence 999998631 1223334454 78889999887643
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.67 E-value=2.9e-16 Score=92.19 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=83.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC------------C------ceeeeccccCCceEEEEEecCCCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST------------G------LQISSLEGHTAPVTTVIVVPASTP 62 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~ 62 (112)
++.|.....+ .+|+|||.++++|+ |.+|+++|++. + ..++.+-.|..+|+++.|+|...
T Consensus 108 lt~HK~~cR~-aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 108 LTSHKSPCRA-AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred Eeecccceee-eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 4568888887 99999999999999 99999999861 0 13566777889999999999984
Q ss_pred ccceeEEEEeeecCCcEEEEeCCCCc---eEEEEecCCCEEEEEEcCCCcEe
Q 033738 63 ATKILSYCWTASLDETIKYWDFSTPE---LLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 63 ~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++++++.|++++++|+.+.. ..+.+....+|.++.|+|.|+++
T Consensus 186 ------ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 186 ------ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFL 231 (430)
T ss_pred ------eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceE
Confidence 78899999999999998643 33344444599999999999976
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.67 E-value=2.5e-15 Score=89.40 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=89.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||.+.|.+ +.|+.||.+|++|. +|.|++|...++.....+...-..+.=+.|+|.++ +++.|+.||.+.
T Consensus 102 ltgHKDSVt~-~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-------illAG~~DGsvW 173 (399)
T KOG0296|consen 102 LTGHKDSVTC-CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-------ILLAGSTDGSVW 173 (399)
T ss_pred ecCCCCceEE-EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc-------EEEeecCCCcEE
Confidence 5789999998 99999999999999 99999999999877767664555666778999886 778999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
+|.+.++...+.+.+|. ++++=.|.|+|+.++
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 99999877778888877 999999999998763
No 58
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=7.5e-16 Score=95.53 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
+.+.. .+|+|||++|++.+ ||.++++|..+.+.....+..-+...|++||||++ |+++++.|-.+.+|.+.
T Consensus 291 g~in~-f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-------yIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 291 GSINE-FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-------YIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ccccc-eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-------EEEecCCcceEEEEEec
Confidence 46776 99999999999999 99999999998877777777788899999999996 88999999999999999
Q ss_pred CCceEEEEecCC-CEEEEEEcC
Q 033738 86 TPELLKTIDVKF-PIFSMVRGK 106 (112)
Q Consensus 86 ~~~~~~~~~~~~-~v~~~~~~~ 106 (112)
+++.+..-..|. +|..++|.|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 999988888877 999999985
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.4e-15 Score=99.05 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=94.6
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|.+|.+.|.. +.|+|.+.++++|+ |-.|++|+..+.+++..+.+|-..|..+.|++.-+ ++++++.|.+|+
T Consensus 47 FdeHdGpVRg-v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP-------WIlSASDDQTIr 118 (1202)
T KOG0292|consen 47 FDEHDGPVRG-VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP-------WILSASDDQTIR 118 (1202)
T ss_pred hhccCCccce-eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc-------eEEEccCCCeEE
Confidence 5689999998 99999999999999 79999999999999999999999999999999986 888999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+|+-.+++++..+.+|. -|-|..|+|....+
T Consensus 119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred EEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 99999999999999998 89999999966544
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.66 E-value=8e-15 Score=85.62 Aligned_cols=102 Identities=29% Similarity=0.416 Sum_probs=86.6
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
..|...+.+ +.|+|+++.+++++ ++.+++||+..++....+..+...+.++.|+|++. ++++++.++.+++
T Consensus 174 ~~~~~~i~~-~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~i~i 245 (289)
T cd00200 174 TGHTGEVNS-VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-------LLASGSEDGTIRV 245 (289)
T ss_pred ecCccccce-EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc-------EEEEEcCCCcEEE
Confidence 456678887 99999998888888 89999999998887777777888999999999863 6667777999999
Q ss_pred EeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
||+.++.....+..+. .+.++.|+|+++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 9999888888877665 899999999987653
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.6e-15 Score=86.83 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=83.4
Q ss_pred ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.||...|.. ..|+|. ++.+++++ |+.+++||++.......+..|..++.++.|+.-.+ ..+++++.|+.|
T Consensus 143 f~gh~~~Iy~-a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~------~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 143 FNGHNSCIYQ-AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH------NVLATGGVDNLV 215 (311)
T ss_pred ecCCccEEEE-EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC------cEEEecCCCceE
Confidence 6789999998 999996 57888888 99999999976444455888999999999998665 467899999999
Q ss_pred EEEeCCCC-ceEEEEecCC-CEEEEEEcCCC
Q 033738 80 KYWDFSTP-ELLKTIDVKF-PIFSMVRGKKG 108 (112)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~-~v~~~~~~~~~ 108 (112)
+.||++.- .++..+..|. .|+.+.|+|..
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcch
Confidence 99999873 5677777777 99999999864
No 62
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=1.2e-15 Score=91.75 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=88.3
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 72 (112)
+-||++.|.. ++|+|.. +.+++|+ |.+|.+|.+... +....+.+|...|.-++|+|... ..+++
T Consensus 77 v~GHt~~vLD-i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~------NVLls 149 (472)
T KOG0303|consen 77 VCGHTAPVLD-IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP------NVLLS 149 (472)
T ss_pred ccCccccccc-cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch------hhHhh
Confidence 4689999999 9999965 6777888 899999998643 34567789999999999999876 35569
Q ss_pred eecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 73 ASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 73 ~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++.|..+.+||+.+|+.+.++.++.-|+++.|+.+|..+
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLL 188 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCcee
Confidence 999999999999999999888866699999999999875
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.5e-17 Score=96.64 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=91.0
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
+...|.| +.|+.|...+++|+ ||.|++|.+.+|.+++.|. .|...|+++.|+.|+. .+++++.|.++++-
T Consensus 262 md~aVlc-i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-------qiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 262 MDDAVLC-ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-------QILSASFDQTVRIH 333 (508)
T ss_pred cccceEE-EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-------hhhcccccceEEEe
Confidence 4567888 99999999999999 9999999999999999987 7999999999999993 55699999999999
Q ss_pred eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+++|+++..+++|+ .|+...|.++|..+
T Consensus 334 GlKSGK~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 334 GLKSGKCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred ccccchhHHHhcCccccccceEEcCCCCeE
Confidence 999999999999998 89999999999876
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.66 E-value=1.5e-15 Score=99.59 Aligned_cols=101 Identities=25% Similarity=0.272 Sum_probs=89.5
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-------C-----------ceeeeccccCCceEEEEEecCCCCc
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-------G-----------LQISSLEGHTAPVTTVIVVPASTPA 63 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~ 63 (112)
..|.+.|.| ++|+|||++||+|+ |..|.+|+-.. + +....+.+|.+.|..++|+|++.
T Consensus 66 ~~h~~sv~C-VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-- 142 (942)
T KOG0973|consen 66 DDHDGSVNC-VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-- 142 (942)
T ss_pred ccccCceeE-EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--
Confidence 468899998 99999999999999 78899998762 0 24566778999999999999984
Q ss_pred cceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 64 TKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 64 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++++++.|++|.+||..+.+.+.++..|. .|-.+.|.|-|+++
T Consensus 143 -----~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 143 -----LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF 186 (942)
T ss_pred -----EEEEecccceEEEEccccceeeeeeecccccccceEECCccCee
Confidence 89999999999999999999999999988 89999999999986
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=3.4e-15 Score=84.79 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=69.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||...|.. ++.+.|...+++++ |..+.+||+++|+..+.+.+|.+.|+.++|+.+. +.+++++.|..++
T Consensus 55 YsghG~EVlD-~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-------SVv~SgsfD~s~r 126 (307)
T KOG0316|consen 55 YSGHGHEVLD-AALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-------SVVASGSFDSSVR 126 (307)
T ss_pred ecCCCceeee-ccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-------eEEEeccccceeE
Confidence 4678888998 89999999999887 9999999999999999999999999999999887 4778999999999
Q ss_pred EEeCCC
Q 033738 81 YWDFST 86 (112)
Q Consensus 81 ~~~~~~ 86 (112)
+||.++
T Consensus 127 ~wDCRS 132 (307)
T KOG0316|consen 127 LWDCRS 132 (307)
T ss_pred EEEccc
Confidence 999764
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=8.6e-15 Score=89.60 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=86.7
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+++|+.++.. ..|+|.+ ..+++|+ |+.+++||+.+......+.+|+..|.+.+|+|..+ -++++|+.||.|
T Consensus 106 ~~ah~apv~~-~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~------hivvtGsYDg~v 178 (487)
T KOG0310|consen 106 LYAHQAPVHV-TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAND------HIVVTGSYDGKV 178 (487)
T ss_pred HhhccCceeE-EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCC------eEEEecCCCceE
Confidence 5789999997 9999976 5566777 68999999998876557889999999999999864 366799999999
Q ss_pred EEEeCCCC-ceEEEEecCCCEEEEEEcCCCcEe
Q 033738 80 KYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++||.+.. ..+..+..+.+|.++.+-|.|..|
T Consensus 179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLI 211 (487)
T ss_pred EEEEeccCCceeEEecCCCceeeEEEcCCCCEE
Confidence 99999876 677777777799999999997765
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.2e-15 Score=87.14 Aligned_cols=102 Identities=14% Similarity=0.240 Sum_probs=89.7
Q ss_pred ccCCCCCcCCCeEEcCCCC--EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSNDVK--RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~--~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+-.|.+.+++ +.|.++.. .|++|+ ||.|.+|+......+..+++|.+.|+.++++|.+. +.++.+.|+.
T Consensus 79 ll~Hagsita-L~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-------LALsVg~D~~ 150 (362)
T KOG0294|consen 79 LLSHAGSITA-LKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-------LALSVGGDQV 150 (362)
T ss_pred eeccccceEE-EEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-------eEEEEcCCce
Confidence 4468899998 99998874 888888 89999999999988999999999999999999996 6679999999
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++||+-.|+....+........+.|+|.|.++
T Consensus 151 lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF 183 (362)
T ss_pred eeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence 999999999888888777766679999999854
No 68
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.64 E-value=5.7e-15 Score=95.34 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=87.8
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-----------------------------------------e
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----------------------------------------Q 40 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~-----------------------------------------~ 40 (112)
+.|.+.|.+ ++...-++.+++++ +|.+++||..... .
T Consensus 490 ~ah~~~V~g-la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 490 PAHKGEVTG-LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred ccccCceeE-EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 468888887 88887788888888 8999999986432 2
Q ss_pred eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 41 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.+.+.+|.+.++.++|||+++ ++++++.|++|++||+.++.++-.+..+.++.++.|+|+|.++
T Consensus 569 vR~f~gh~nritd~~FS~Dgr-------WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGR-------WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFL 632 (910)
T ss_pred hHHhhccccceeeeEeCCCCc-------EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEE
Confidence 355667999999999999996 8889999999999999999999999999999999999999986
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.9e-15 Score=85.76 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=84.5
Q ss_pred ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
++.|...|.. +.|++- ++.+++++ |++|++|+...++.+..+.+|...|...+|+|... ..+++++.|+.+
T Consensus 100 ~kEH~~EV~S-vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~------nlfas~Sgd~~l 172 (311)
T KOG0277|consen 100 FKEHKREVYS-VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP------NLFASASGDGTL 172 (311)
T ss_pred HHhhhhheEE-eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC------CeEEEccCCceE
Confidence 5789999997 999985 56677778 99999999998888999999999999999999875 477899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
++||++.......+..|. .+.++.|+.-..
T Consensus 173 ~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred EEEEecCCCceeEEEeccceeEeecccccCC
Confidence 999998654444477777 888888886443
No 70
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.3e-16 Score=99.18 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=93.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|++|...|.+ +.|+++..+|++|+ +|+|++||+..++.++.+.+|...+..++|+|-+. |.++++.|..+.
T Consensus 66 ~~~hespIeS-l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~-------~~a~gStdtd~~ 137 (825)
T KOG0267|consen 66 LTGHESPIES-LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE-------FFASGSTDTDLK 137 (825)
T ss_pred eeccCCccee-eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE-------Eeccccccccce
Confidence 5789999998 99999999999998 89999999999988899999999999999999984 888999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+||.+...|...+..|. -+..+.|+|+|+++
T Consensus 138 iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 138 IWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV 169 (825)
T ss_pred ehhhhccCceeeecCCcceeEEEeecCCCcee
Confidence 99999888999998876 67888999999875
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-14 Score=85.02 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=79.9
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|.||...|.. ++.+|-+..+++++ |++|++||++..++...+..... ..+++.|.|- +++.+...+.|+
T Consensus 96 F~GH~~~V~s-L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL-------ifA~~~~~~~Ik 165 (311)
T KOG1446|consen 96 FPGHKKRVNS-LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL-------IFALANGSELIK 165 (311)
T ss_pred cCCCCceEEE-EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc-------EEEEecCCCeEE
Confidence 6899999998 99999999999999 99999999998777666653333 4578999993 677777777999
Q ss_pred EEeCCC--CceEEEEecC----CCEEEEEEcCCCcEeC
Q 033738 81 YWDFST--PELLKTIDVK----FPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~--~~~~~~~~~~----~~v~~~~~~~~~~~~~ 112 (112)
+||++. +.+..++... .....+.|+|+|++++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 999985 3444454433 2788999999999863
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.63 E-value=3.3e-14 Score=94.57 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=81.5
Q ss_pred CCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEEEEe
Q 033738 7 SYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 7 ~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
..+.+ ++|++. ++.+++++ |+.|++||+.+++.+..+..|.+.|.+++|+| ++. ++++++.|+.+++||
T Consensus 533 ~~v~~-l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~-------~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 533 SKLSG-ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT-------LLASGSDDGSVKLWS 604 (793)
T ss_pred Cceee-EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCC-------EEEEEcCCCEEEEEE
Confidence 45666 889874 68888888 99999999998888888899999999999997 553 778999999999999
Q ss_pred CCCCceEEEEecCCCEEEEEEc-CCCcEe
Q 033738 84 FSTPELLKTIDVKFPIFSMVRG-KKGFAV 111 (112)
Q Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 111 (112)
++++.++..+..+..+.++.|+ ++|..+
T Consensus 605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 605 INQGVSIGTIKTKANICCVQFPSESGRSL 633 (793)
T ss_pred CCCCcEEEEEecCCCeEEEEEeCCCCCEE
Confidence 9999888888777788899985 455544
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=2.2e-15 Score=91.16 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=83.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.||...|.. +.||||.++|++++ +..+++||..+|.....+.. +...+.+++|.||+. .+++|+.|+.+
T Consensus 265 lvgh~~~V~y-i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-------~~V~Gs~dr~i 336 (519)
T KOG0293|consen 265 LVGHSQPVSY-IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-------RFVTGSPDRTI 336 (519)
T ss_pred eecccCceEE-EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-------eeEecCCCCcE
Confidence 5689999998 99999999999988 88899999999987666653 346688999999995 67799999999
Q ss_pred EEEeCCCCceEEEEecCC--CEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~ 112 (112)
..||+. |+....+.+-. .|.+++.++||++++
T Consensus 337 ~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 337 IMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred EEecCC-cchhhcccccccceeEEEEEcCCCcEEE
Confidence 999987 55555554432 689999999998764
No 74
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.8e-15 Score=92.39 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=90.6
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|++|.+++.+ ++.+|...++++++ |-.|++||.+.. .+...+.+|...|.+++|.|+.. +.+++++.|+++
T Consensus 93 FeAH~DyIR~-iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~------ntFaS~sLDrTV 165 (794)
T KOG0276|consen 93 FEAHSDYIRS-IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP------NTFASASLDRTV 165 (794)
T ss_pred eeccccceee-eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc------cceeeeeccccE
Confidence 6789999998 99999999999999 799999998764 56678999999999999999886 477899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCC
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKG 108 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 108 (112)
++|.+.+..+..++.+|. .|+++.|-+.|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCC
Confidence 999999999999999887 99999998766
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.62 E-value=3.5e-14 Score=81.41 Aligned_cols=103 Identities=23% Similarity=0.355 Sum_probs=80.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE------------
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS------------ 68 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------ 68 (112)
+.+|++.|.. +-|....+.++++. |+.||+||.+++..+..+.. ..+|+++.++++++ ++.
T Consensus 139 ~~ghtg~Ir~-v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~----ilTia~gssV~Fwda 212 (334)
T KOG0278|consen 139 ISGHTGGIRT-VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGR----ILTIAYGSSVKFWDA 212 (334)
T ss_pred hcCCCCccee-EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCC----EEEEecCceeEEecc
Confidence 4679999998 99998888888877 89999999999876665542 34566666666663 221
Q ss_pred -------------------------EEEeeecCCcEEEEeCCCCceEEEE-ecCC-CEEEEEEcCCCcE
Q 033738 69 -------------------------YCWTASLDETIKYWDFSTPELLKTI-DVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 69 -------------------------~~~~~~~d~~i~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~ 110 (112)
++++++.|..++.||+.+|+.+... ++|. +|.++.|+|+|+.
T Consensus 213 ksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 213 KSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence 6778888889999999998887775 5554 9999999999974
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=1.2e-14 Score=84.92 Aligned_cols=94 Identities=21% Similarity=0.372 Sum_probs=79.4
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
..|.+.|.+ ++|+.||..+++++ |+.+++||+.+++ ...+..|.++|..+.|-+... . ..++++++|.++++
T Consensus 69 ~~~~~PvL~-v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~--~---~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 69 QSHDGPVLD-VCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN--Y---QCLVTGSWDKTLKF 141 (347)
T ss_pred hccCCCeEE-EEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC--c---ceeEecccccceee
Confidence 357889998 99999999999998 9999999999984 778888999999999987652 1 14679999999999
Q ss_pred EeCCCCceEEEEecCCCEEEEE
Q 033738 82 WDFSTPELLKTIDVKFPIFSMV 103 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~ 103 (112)
||.+...++.++..+..++++.
T Consensus 142 WD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 142 WDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred cccCCCCeeeeeeccceeeehh
Confidence 9999998888888776666543
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.61 E-value=7.6e-15 Score=87.79 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=83.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||++.|.. +.|++ ...+++++ |.+|+.||+.++.....+.. ....++++.+|... ++++++.|..++
T Consensus 256 l~GHt~~Vs~-V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~-------Ll~~gssdr~ir 325 (423)
T KOG0313|consen 256 LEGHTEPVSS-VVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK-------LLASGSSDRHIR 325 (423)
T ss_pred ecccccceee-EEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc-------eeeecCCCCcee
Confidence 6899999998 99988 66677777 99999999999987777765 35678999999874 778999999999
Q ss_pred EEeCCCCc---eEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPE---LLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~---~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
+||.+++. ..+++..|. .|.++.|+|...++|
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence 99998752 345566666 999999999887654
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.8e-14 Score=91.07 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=90.2
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
|+...+++ ++.++.|..+++|+ .+.+++||.++.+.+..+.+|...|..+-.+++|. .+++++.|++|++|
T Consensus 169 G~k~siYS-LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-------~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 169 GPKDSIYS-LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-------RLLSASSDGTIRLW 240 (735)
T ss_pred CCccceee-eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-------eEeecCCCceEEee
Confidence 67788887 99999998888888 89999999999988888999999999999999994 56699999999999
Q ss_pred eCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
|+...+|+.++..|. .|+++..+|+-..+|
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 999999999998887 899998887766554
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.61 E-value=1e-14 Score=83.75 Aligned_cols=103 Identities=24% Similarity=0.285 Sum_probs=85.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee--eccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS--SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+++|...+.. ++|+.+|..|++++ |+++++|++...+... ...+|.+.|-.++|+|..+ ..+++++.|.+
T Consensus 16 ~~~~~~~v~S-v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~------d~~atas~dk~ 88 (313)
T KOG1407|consen 16 LQGHVQKVHS-VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP------DLFATASGDKT 88 (313)
T ss_pred hhhhhhcceE-EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC------cceEEecCCce
Confidence 3578888887 99999999999999 9999999998664333 3457888888999998875 36679999999
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++||.+.+++...+.....-..+.|+|+|+++
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 999999999999988877655568999999875
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.6e-14 Score=84.31 Aligned_cols=106 Identities=25% Similarity=0.401 Sum_probs=76.8
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce-----eeeccccCCceEEEEEecCCCCccceeE------
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ-----ISSLEGHTAPVTTVIVVPASTPATKILS------ 68 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~------ 68 (112)
+|+||.+.|.+ ++|+.||+.|++++ |+.|++|+++.... ++.-. ..+..+.+.|+||.+ ..++.
T Consensus 81 ~LKgH~~~vt~-~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~--s~vv~~~~g~~ 156 (420)
T KOG2096|consen 81 VLKGHKKEVTD-VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCK--SVVVSVKRGNK 156 (420)
T ss_pred hhhccCCceee-eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcc--eEEEEEccCCE
Confidence 37899999998 99999999999998 99999999875321 11100 111234555555553 22211
Q ss_pred --------------------------------------------EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEE
Q 033738 69 --------------------------------------------YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMV 103 (112)
Q Consensus 69 --------------------------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~ 103 (112)
++++++.|..|.+|+++ |+.+..+.... ..+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 78899999999999998 88888887655 666677
Q ss_pred EcCCCcEe
Q 033738 104 RGKKGFAV 111 (112)
Q Consensus 104 ~~~~~~~~ 111 (112)
.+|+|+++
T Consensus 236 vSP~GRFi 243 (420)
T KOG2096|consen 236 VSPDGRFI 243 (420)
T ss_pred eCCCCcEE
Confidence 88888875
No 81
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=6.3e-14 Score=79.28 Aligned_cols=94 Identities=17% Similarity=0.309 Sum_probs=72.3
Q ss_pred CCcCCCeEEcCCCCEEEEE--c-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec---CCcEE
Q 033738 7 SYVSSPPAFSNDVKRLLVC--T-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL---DETIK 80 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~ 80 (112)
+.|.+ ++|+|+|+.++.. . +..+.+||++ ++.+..+. ...+..+.|+|+|+ +++.++. .|.+.
T Consensus 60 ~~I~~-~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~-------~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 60 GPIHD-VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR-------FLVLAGFGNLNGDLE 128 (194)
T ss_pred CceEE-EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC-------EEEEEEccCCCcEEE
Confidence 45887 9999999887644 3 5799999997 55566654 45678899999996 5556653 46799
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+||.++.+.+...... .+..+.|+|+|+++.
T Consensus 129 ~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 129 FWDVRKKKKISTFEHS-DATDVEWSPDGRYLA 159 (194)
T ss_pred EEECCCCEEeeccccC-cEEEEEEcCCCCEEE
Confidence 9999988887666533 678899999999873
No 82
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=9.4e-15 Score=88.69 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=83.7
Q ss_pred cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
++|++.|.. +.|+..- +.|++|+ |.+|++||+.++++...+.-|.+.|.+++|+|... .++++|+.|+++.
T Consensus 240 ~gHTdavl~-Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p------~~LLsGs~D~~V~ 312 (463)
T KOG0270|consen 240 SGHTDAVLA-LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP------SVLLSGSYDGTVA 312 (463)
T ss_pred ccchHHHHH-HHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc------eEEEeccccceEE
Confidence 478889887 8888764 6778888 99999999999999889988999999999999886 5778999999999
Q ss_pred EEeCCC-CceEEEEecCCCEEEEEEcCCCcE
Q 033738 81 YWDFST-PELLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
+.|.+. +..-..++....|..++|+|....
T Consensus 313 l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 313 LKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred eeeccCccccCceEEeccceEEEEecCCCce
Confidence 999984 344455666667888888876543
No 83
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.2e-15 Score=96.50 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=91.6
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+.....|.. ++|+|...+++++- .|.|++||.+.+..+..|..|+++|..++|+|..+ ++++|+.|-.|++
T Consensus 6 EskSsRvKg-lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-------lFVSGGDDykIkV 77 (1202)
T KOG0292|consen 6 ESKSSRVKG-LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-------LFVSGGDDYKIKV 77 (1202)
T ss_pred hcccccccc-eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-------eEEecCCccEEEE
Confidence 445677887 99999999999997 89999999999999999999999999999999997 8899999999999
Q ss_pred EeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|++.+.+|+.++.+|. -|+.+.|++.-.+|
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI 108 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceE
Confidence 9999999999998887 88888888876654
No 84
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.59 E-value=6.6e-14 Score=93.13 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=79.2
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----c----eeeeccccCCceEEEEEecCCCCccceeEEEEee
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----L----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
..|.+.|.+ ++|+|+|+++++++ |+.|++|+.... . ....+. +...+.+++|++... .+++++
T Consensus 480 ~~~~~~V~~-i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~------~~las~ 551 (793)
T PLN00181 480 LNSSNLVCA-IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIK------SQVASS 551 (793)
T ss_pred cCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCC------CEEEEE
Confidence 347888887 99999999999998 999999997532 1 111222 345688999987532 267799
Q ss_pred ecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcC-CCcEe
Q 033738 74 SLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGK-KGFAV 111 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~ 111 (112)
+.|+.+++||+.+++.+..+..|. .|++++|+| ++.++
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 999999999999998888888776 899999997 56654
No 85
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.59 E-value=5.5e-14 Score=87.17 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=88.3
Q ss_pred ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.||...+.. +.|-|... ++++++ |+.+.+|+-...+-...+..|..-|.+++++||+. .+++.+.|+.+
T Consensus 143 i~GhSr~ins-~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-------~Fat~gsDgki 214 (603)
T KOG0318|consen 143 ITGHSRRINS-VDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-------RFATAGSDGKI 214 (603)
T ss_pred eeccceeEee-eeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC-------eEEEecCCccE
Confidence 5789999997 99999875 566777 89999999776666677788999999999999995 88899999999
Q ss_pred EEEeCCCCceEEEEe---cCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTID---VKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~~ 111 (112)
.+||-.+|+.+..+. .|. .+++++|+||+..+
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 999999999998887 454 89999999999765
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.59 E-value=5.9e-14 Score=85.37 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=88.2
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc--CCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
..|.+.|.. +..+|.|.+|++++ |+...+.|++++..+...... +-.+++.+|+|||- ++.++..|+.+
T Consensus 300 ~~h~~~V~~-ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-------ifgtgt~d~~v 371 (506)
T KOG0289|consen 300 RPHEEPVTG-LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-------IFGTGTPDGVV 371 (506)
T ss_pred cccccccee-eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-------EEeccCCCceE
Confidence 458889998 99999999999999 899999999999877655432 33478999999994 78899999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++||+.++..+..+..|. +|..+.|+.+|.++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~L 404 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL 404 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEE
Confidence 999999999999999887 99999999999876
No 87
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.59 E-value=1.4e-14 Score=84.41 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=81.3
Q ss_pred CCCCcCCCeEEcC--CCCEEEEEcCCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 5 GRSYVSSPPAFSN--DVKRLLVCTSNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 5 h~~~v~~~~~~~~--~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
|....+. -+|+| ||+.+++.+|+++..||+++.+....+ ..|...|..+.|+|+.. .++++++.|+.+++
T Consensus 169 ~~~~fts-g~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq------~~lvt~gDdgyvri 241 (370)
T KOG1007|consen 169 MRHSFTS-GAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQ------HILVTCGDDGYVRI 241 (370)
T ss_pred ccceecc-cccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCce------EEEEEcCCCccEEE
Confidence 3445555 78998 678999999999999999987665555 46888899999999874 47789999999999
Q ss_pred EeCCC-CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 82 WDFST-PELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
||.+. ..+++.+..|. +|++++|+|.-..+
T Consensus 242 WD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 242 WDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EeccCCCccccccCCCceEEEEEEecCccceE
Confidence 99985 56788888888 99999999976543
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.58 E-value=4.4e-15 Score=85.04 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=86.1
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
|...|.. ++|+.|.+.|++|+ +.-++++|++.. .+...+.+|.+.|..+.|..... -+++...|+.+|+|
T Consensus 99 hkhivk~-~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~-------~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 99 HKHIVKA-VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK-------CILSSADDKTVRLW 170 (334)
T ss_pred hhheeee-EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc-------eEEeeccCCceEEE
Confidence 6666776 99999999999999 899999999875 45678889999999999987663 33366999999999
Q ss_pred eCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 83 DFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
|.+++..++.+....+|.++.++++|+++
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRIL 199 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEE
Confidence 99999999999999999999999999876
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=3.5e-14 Score=83.40 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=86.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
++.|.+.+.+ ++. ++.++++|+ |.+|++||+++...+..+..|.+.++++.|.+.-. .+ .++++..||.|.
T Consensus 39 ~~aH~~sita-vAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~s----hLlS~sdDG~i~ 110 (362)
T KOG0294|consen 39 FSAHAGSITA-LAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KS----HLLSGSDDGHII 110 (362)
T ss_pred ccccccceeE-EEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hh----heeeecCCCcEE
Confidence 4668888876 666 578999998 99999999999888888888999999999987652 02 455999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 110 (112)
+|+...-+++..++.|. .|+.++.+|.|+.
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKL 141 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCce
Confidence 99999888999999887 8999999999875
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=9.1e-15 Score=93.79 Aligned_cols=103 Identities=11% Similarity=0.147 Sum_probs=87.9
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|..|...+.+ +.|++-. ..|++|+ ||.|+.||++..+....+.+....|..+.|+|... .+++++...|.+
T Consensus 129 f~EH~Rs~~~-ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~------~~F~s~~dsG~l 201 (839)
T KOG0269|consen 129 FNEHERSANK-LDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG------NKFASIHDSGYL 201 (839)
T ss_pred hhhhccceee-eeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC------ceEEEecCCceE
Confidence 5679999998 9999865 7888998 99999999998877777877778899999999765 377899999999
Q ss_pred EEEeCCC-CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFST-PELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++||++. .++..++..|. +|.++.|+|++.+|
T Consensus 202 qlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 202 QLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred EEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 9999986 45667777776 99999999988876
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.57 E-value=1.1e-13 Score=80.92 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCC-Ccee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 6 RSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTST-GLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 6 ~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
.+.|.+ ++|||. ...+++++ |++||+|+++. +... +....+.+++.+++|+.++. .+++++.|+.+++
T Consensus 27 ~DsIS~-l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-------kVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISA-LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-------KVFSGGCDKQAKL 98 (347)
T ss_pred ccchhe-eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-------eEEeeccCCceEE
Confidence 456777 999995 45555777 99999999876 3322 34456899999999999994 5569999999999
Q ss_pred EeCCCCceEEEEecCCCEEEEEEcCCCc
Q 033738 82 WDFSTPELLKTIDVKFPIFSMVRGKKGF 109 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 109 (112)
||+.+++....-.+..+|..+.|-+...
T Consensus 99 wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 99 WDLASGQVSQVAAHDAPVKTCHWVPGMN 126 (347)
T ss_pred EEccCCCeeeeeecccceeEEEEecCCC
Confidence 9999996654444444898888866543
No 92
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.8e-15 Score=94.20 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=88.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.+|...+.. ++|+|+|++++.++ |..+++||+..|+....|..|++.+..+.++|..- ++++|+.|++++
T Consensus 150 ~~s~~~vv~~-l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~-------Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 150 YKSHTRVVDV-LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV-------LLAPGSSDRTVR 221 (825)
T ss_pred ecCCcceeEE-EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhh-------hhccCCCCceee
Confidence 4567778887 99999999999999 79999999999998999999999999999999873 677999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+||+++-+.+....... .|.+..|+|++..+
T Consensus 222 f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 222 FWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred eeccceeEEeeccCCccCCceeeeecCCceee
Confidence 99998766665555444 89999999998765
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.57 E-value=3.6e-15 Score=92.30 Aligned_cols=92 Identities=24% Similarity=0.416 Sum_probs=82.4
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
++++||.+...++. ||.|.+||+.....++.|.+|...+.|+.++++|. -+-+|+.|.++|-||++++..+.
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-------klWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-------KLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc-------eeecCCCccceeehhhhhhhhhh
Confidence 78899998777665 99999999998888999999999999999999994 56699999999999999998887
Q ss_pred EEecCCCEEEEEEcCCCcEe
Q 033738 92 TIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~~~ 111 (112)
.....+.|.++.++|.++++
T Consensus 588 qhdF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 588 QHDFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred hhhhhhhheecccCCCccce
Confidence 77777789999999998876
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.9e-13 Score=79.25 Aligned_cols=97 Identities=21% Similarity=0.405 Sum_probs=76.1
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-------------------------------------------
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL------------------------------------------- 39 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~------------------------------------------- 39 (112)
.-.+.+.+ +.|+++|+.+++++ |.++++||..+++
T Consensus 12 ~~~~~i~s-l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 12 ETNGKINS-LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred cCCCceeE-EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 34567887 99999999999987 7899999987543
Q ss_pred -eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738 40 -QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 40 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 110 (112)
.++-|.+|...|..++.+|.++ .+++++.|+++++||++..+|.-.+.... ++ .+|.|+|-+
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d-------~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLi 154 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDD-------TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLI 154 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCC-------eEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcE
Confidence 3566788999999999999885 67799999999999999877765554433 33 466776643
No 95
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.6e-13 Score=80.89 Aligned_cols=107 Identities=18% Similarity=0.284 Sum_probs=82.1
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE-----------
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS----------- 68 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------- 68 (112)
+|.+|..+|.+ ++||+||+.|++++ |..+.+||+..|.+...+. ...+|+...|+|... ++.+.
T Consensus 60 ~lsaH~~pi~s-l~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~--n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 60 MLSAHVRPITS-LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKR--NKCVATIMEESPVVID 135 (405)
T ss_pred hhhccccceeE-EEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccC--CeEEEEEecCCcEEEE
Confidence 46789999997 99999999999999 9999999999887665554 345566666665543 22221
Q ss_pred -------------------------------EEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738 69 -------------------------------YCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 69 -------------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 111 (112)
|+++|...|.+.++|..+-+++..++... .+..+.++..|+.+
T Consensus 136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL 211 (405)
T ss_pred ecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence 78889999999999999888887776544 77778887777654
No 96
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=2.6e-14 Score=86.09 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=87.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC--------C--------CceeeeccccCCceEEEEEecCCCCcc
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--------T--------GLQISSLEGHTAPVTTVIVVPASTPAT 64 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 64 (112)
|..|...|++ ++|+|+|+.|++|+ ++.+.+|-.. + ......+.+|...+..++|+|++.
T Consensus 61 Ls~H~~aVN~-vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--- 136 (434)
T KOG1009|consen 61 LSRHTRAVNV-VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--- 136 (434)
T ss_pred ccCCcceeEE-EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---
Confidence 6789999998 99999999999999 6999999765 2 112345567888999999999995
Q ss_pred ceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 65 KILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 65 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
++++++-|..+++||+..|........|. .++.++|.|-++++
T Consensus 137 ----~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 137 ----FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred ----eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence 78899999999999999999999988887 89999999987764
No 97
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=84.57 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=90.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC---------CCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS---------TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
+.+|...|++ +.|+.||..+++++ ||.|.+|.+- +.++.+.+..|..+|+.+...+.+. . ..++
T Consensus 119 ~~aHYQ~ITc-L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~----~-~rl~ 192 (476)
T KOG0646|consen 119 LSAHYQSITC-LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT----N-ARLY 192 (476)
T ss_pred HHhhccceeE-EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc----c-ceEE
Confidence 4679999998 99999999999999 9999999763 2345678889999999999887652 1 3677
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+++.|+++++||+..|..+.++..+..+.+++..|.+..+|
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY 233 (476)
T ss_pred EecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE
Confidence 99999999999999999999999999999999999887665
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=4.6e-14 Score=90.66 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 5 GRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 5 h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
-.+.|.+ +.|+|. +..++++. .|.+++||++.. +...++..|.++|.|+.|+|+.. ++++||.|+++++
T Consensus 175 nSESiRD-V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-------~lATGGRDK~vki 246 (839)
T KOG0269|consen 175 NSESIRD-VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-------WLATGGRDKMVKI 246 (839)
T ss_pred cchhhhc-eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-------eeeecCCCccEEE
Confidence 3456787 999985 57888887 699999999865 45578889999999999999874 8899999999999
Q ss_pred EeCCCCc--eEEEEecCCCEEEEEEcCCCcE
Q 033738 82 WDFSTPE--LLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 82 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
||..+++ ...++....++..+.|-|+-.+
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccc
Confidence 9998653 4556666669999999998654
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.54 E-value=4.3e-14 Score=87.65 Aligned_cols=103 Identities=19% Similarity=0.320 Sum_probs=75.9
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc-eeeecc-----ccCCceEEEEEecCCCCccceeEEEEee
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL-QISSLE-----GHTAPVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
.+||...+.+ .+|+|+. +.+++++ |+++++||++..+ ....++ +..-+++.++|++++. .++++
T Consensus 264 TKGHia~lt~-g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-------~iAag 335 (641)
T KOG0772|consen 264 TKGHIAELTC-GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-------LIAAG 335 (641)
T ss_pred cCCceeeeec-cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-------hhhhc
Confidence 3789999998 9999986 5677777 9999999987542 233332 2233568999999996 67899
Q ss_pred ecCCcEEEEeCCCCc--eEE-EEecC---CCEEEEEEcCCCcEeC
Q 033738 74 SLDETIKYWDFSTPE--LLK-TIDVK---FPIFSMVRGKKGFAVF 112 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~--~~~-~~~~~---~~v~~~~~~~~~~~~~ 112 (112)
+.||.|.+|+..... +.. .-..| ..++++.|+++|++|.
T Consensus 336 c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 336 CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 999999999975421 111 22223 2799999999999863
No 100
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.54 E-value=2.1e-13 Score=81.74 Aligned_cols=100 Identities=27% Similarity=0.391 Sum_probs=85.1
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-------------------------CceeeeccccCCceEEEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-------------------------GLQISSLEGHTAPVTTVIV 56 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~ 56 (112)
.||...|.+ ++..++|..+++++ |..+.+|+..+ +.++..+.+|..+|..+.|
T Consensus 190 ~GHk~~V~s-Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDS-VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeE-EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 489999997 99999999999999 99999999321 1245667789999999999
Q ss_pred ecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 57 VPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++.+ .+.+++.|++|+.||+.++.....+.......++.++|..+.|
T Consensus 269 ~d~~--------v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 269 SDAT--------VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLL 315 (423)
T ss_pred cCCC--------ceEeecccceEEEEEeecccceeeeecCcceeEeeccccccee
Confidence 9855 5669999999999999999999888888889999988876654
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.53 E-value=4.7e-13 Score=85.35 Aligned_cols=94 Identities=26% Similarity=0.341 Sum_probs=82.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||.+.|.+ +++...+..+++|+ |.++++||..++++...+.+|...+.++...+. ++++|+.|.+++
T Consensus 245 l~GH~g~V~~-l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~---------~~~sgs~D~tVk 314 (537)
T KOG0274|consen 245 LVGHFGGVWG-LAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF---------LLVSGSRDNTVK 314 (537)
T ss_pred ccCCCCCcee-EEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc---------eEeeccCCceEE
Confidence 6789999998 99987789999999 999999999999999999999998888866433 456789999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEc
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRG 105 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~ 105 (112)
+|++.++.++.++..|. +|.++..+
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec
Confidence 99999999999998655 89988877
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.53 E-value=8.8e-14 Score=81.97 Aligned_cols=99 Identities=28% Similarity=0.282 Sum_probs=84.2
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
...|.+ +.|+|.|.+|+.|. ...+++||+++.++...- .+|.+.|+++.+++.++ ++++++.||.|++
T Consensus 216 ~~~vrs-iSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-------lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 216 TEPVRS-ISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-------LYVTASKDGAIKL 287 (430)
T ss_pred cceeee-EeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-------EEEEeccCCcEEe
Confidence 456777 99999999999999 589999999988765433 35788999999999995 8889999999999
Q ss_pred EeCCCCceEEEEec---CCCEEEEEEcCCCcEeC
Q 033738 82 WDFSTPELLKTIDV---KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 82 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~ 112 (112)
||--+++|+.++.. .+.|.+..|..+|++++
T Consensus 288 wDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 288 WDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred eccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 99988999988853 23899999999999874
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=5.4e-13 Score=81.92 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=86.3
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
.|..+|.. +.+-|.|..+++++...+++||+.+|. .+.....|...|+|+++..++. -+++++-|+.+++|
T Consensus 194 nhg~pVe~-vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-------rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 194 NHGCPVES-VLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-------RLLSGSLDRHVKVF 265 (487)
T ss_pred cCCCceee-EEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-------eEeecccccceEEE
Confidence 36777887 889999999999999999999998654 4455556999999999998873 55599999999999
Q ss_pred eCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 83 DFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
|+.+.+.+..+..+.+|.+++.+|+++.+
T Consensus 266 d~t~~Kvv~s~~~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 266 DTTNYKVVHSWKYPGPVLSIAVSPDDQTV 294 (487)
T ss_pred EccceEEEEeeecccceeeEEecCCCceE
Confidence 99999999999999999999999988754
No 104
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=1.8e-13 Score=87.99 Aligned_cols=99 Identities=27% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
.+.|.+ +++||||++|+.+= |++|++|-+++-+-...+-+|.-||.++..+|+.. .++||+.|..+++|.+
T Consensus 508 ~ddvL~-v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-------livTgSADKnVKiWGL 579 (888)
T KOG0306|consen 508 EDDVLC-VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-------LIVTGSADKNVKIWGL 579 (888)
T ss_pred cccEEE-EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC-------eEEeccCCCceEEecc
Confidence 356777 99999999999998 99999999999888888999999999999999995 7789999999999999
Q ss_pred CCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 85 STPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 85 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
.=|.|-+.+..|. .|.++.|.|....+|
T Consensus 580 dFGDCHKS~fAHdDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 580 DFGDCHKSFFAHDDSVMSVQFLPKTHLFF 608 (888)
T ss_pred ccchhhhhhhcccCceeEEEEcccceeEE
Confidence 9999999888887 899999999766543
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.51 E-value=3.4e-14 Score=88.10 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=73.7
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC--c-eeeeccccCC--ceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--L-QISSLEGHTA--PVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~--~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
.+.. ++|++||+++++|. ||+|.+|+.... . ....-..|.. .++++.||++++ ++++-+.|..+++
T Consensus 319 ~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-------~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 319 PVTS-CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-------YLLSRGFDDTLKV 390 (641)
T ss_pred Ccee-eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-------hhhhccCCCceee
Confidence 3454 89999999999998 999999997532 1 1223345655 899999999995 7789999999999
Q ss_pred EeCCCC-ceEEEEec---CCCEEEEEEcCCCcEeC
Q 033738 82 WDFSTP-ELLKTIDV---KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 82 ~~~~~~-~~~~~~~~---~~~v~~~~~~~~~~~~~ 112 (112)
||++.- +++..... ..+-+.++|+|+.+.|+
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence 999874 45544432 22677889999988764
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=6.4e-13 Score=75.58 Aligned_cols=101 Identities=12% Similarity=0.190 Sum_probs=83.9
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--c-----CCceEEEEEecCCCCccceeEEEEee
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--H-----TAPVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
+.||++.+.. -++-+|-.+++|+ |.+|++||++-..++..+.. | ...|..++..|.++ +++++
T Consensus 179 ~sghtghila--lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-------ll~sg 249 (350)
T KOG0641|consen 179 LSGHTGHILA--LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-------LLASG 249 (350)
T ss_pred ecCCcccEEE--EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-------eeeec
Confidence 5688988875 4566788899999 99999999987766655532 2 24688999999996 77899
Q ss_pred ecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 74 SLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
-.|....+||++.+++++.+..|. .+.++.|+|...++
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl 288 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL 288 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE
Confidence 999999999999999999998887 99999999987765
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.51 E-value=5.1e-13 Score=80.86 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=80.1
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc----cCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+.|.. +..+++|..+.+.+ |..+.++|+++.+....+.. -....+.+.|||++. |+++|+.||.+++
T Consensus 342 g~vtS-l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~-------YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 342 GRVTS-LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS-------YVAAGSADGSVYI 413 (459)
T ss_pred cceee-EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc-------eeeeccCCCcEEE
Confidence 47776 99999998888888 99999999998765544432 122367889999995 9999999999999
Q ss_pred EeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKF---PIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~ 111 (112)
|++.++++...+.... .+.++.|+|.|..+
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 9999999988887644 59999999999865
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=1.1e-13 Score=81.84 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=89.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|+||.+.|.+ ..|-..|+.+++++ |.+-.+||++++..+..+.+|..+.+.+.-+|..+ ++++.+.|.+.+
T Consensus 268 ltgH~~vV~a-~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-------LVvTsSrDtTFR 339 (481)
T KOG0300|consen 268 LTGHRAVVSA-CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-------LVVTSSRDTTFR 339 (481)
T ss_pred eeccccceEe-hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-------EEEEeccCceeE
Confidence 6889999998 99999999999999 99999999999999999999999999888889885 677999999999
Q ss_pred EEeCCCC-ceEEEEecCC-CEEEEEEcCCCcE
Q 033738 81 YWDFSTP-ELLKTIDVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~ 110 (112)
+||++.. ..+..+.+|. .|+++.|+.+.+.
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v 371 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV 371 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecCCce
Confidence 9999854 4567777777 8999999877654
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.2e-13 Score=87.16 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=83.6
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-------c-CCceEEEEEecCCCCccceeEEEEe
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-------H-TAPVTTVIVVPASTPATKILSYCWT 72 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~~~~~~~~~~ 72 (112)
+.+|.+.|.+ +.++|.+++|++.+ ||.|++|+++++.....+.. . ...+..++|+|++. .++.
T Consensus 134 lrgh~apVl~-l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-------~la~ 205 (933)
T KOG1274|consen 134 LRGHDAPVLQ-LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-------TLAV 205 (933)
T ss_pred ecccCCceee-eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-------eEEe
Confidence 6789999998 99999999999998 99999999998765444432 1 23456789999974 5668
Q ss_pred eecCCcEEEEeCCCCceEEEEecCC---CEEEEEEcCCCcEe
Q 033738 73 ASLDETIKYWDFSTPELLKTIDVKF---PIFSMVRGKKGFAV 111 (112)
Q Consensus 73 ~~~d~~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~ 111 (112)
.+.|+.|.+|+....+....+.... .+..+.|+|+|+||
T Consensus 206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 8889999999999888887776533 58899999999987
No 110
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.50 E-value=1.4e-14 Score=86.41 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=80.1
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+|.||...|.. +.|+ .+++++++ |.++++|++.+.+.++.+.+|...+-|+++ .++ ++++|+.|.+|
T Consensus 315 VLvGHrAaVNv-Vdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~r-------lvVSGSSDntI 382 (499)
T KOG0281|consen 315 VLVGHRAAVNV-VDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDR-------LVVSGSSDNTI 382 (499)
T ss_pred HHhhhhhheee-eccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCe-------EEEecCCCceE
Confidence 36789988886 7664 56999998 999999999999999999999988888766 453 67799999999
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEcC
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRGK 106 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 106 (112)
++||+..|.+++.+.+|. -|.++.|..
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhheeecC
Confidence 999999999999998887 788888763
No 111
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.49 E-value=1.7e-13 Score=81.91 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=68.0
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCC----CCcccee--------
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS----TPATKIL-------- 67 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~-------- 67 (112)
+|.||++.|.| +.+ +.+.+++|+ |.+|++||.++++++..+..|...|..+.|+..- ..++.+.
T Consensus 232 ~L~GHtGSVLC-Lqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 232 ILTGHTGSVLC-LQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred hhhcCCCcEEe-eec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCch
Confidence 37899999986 665 567889998 9999999999998777776666666665554321 0000000
Q ss_pred ----------------------EEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEE
Q 033738 68 ----------------------SYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVR 104 (112)
Q Consensus 68 ----------------------~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~ 104 (112)
-|+++++.|+++++|++.++++++++.+|. .+-++.+
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY 368 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY 368 (499)
T ss_pred HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc
Confidence 066677777777777777777777777665 5544443
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.49 E-value=1.5e-12 Score=83.11 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=84.6
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+|.||++.|.. +++-+++.++-++.||.|+.|++ +++.+....+|+..+.++....++. .+++++.|++++
T Consensus 174 tf~gHtD~VRg-L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~-------~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 174 TFSGHTDCVRG-LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG-------LIVSTGEDRTLR 244 (745)
T ss_pred hhccchhheee-eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC-------eEEEecCCceEE
Confidence 37899999998 99998877765556999999999 5778888899999999999666653 778999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+|+.. ++.+.+..+. .++++.+-++|..+
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgDIv 274 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGDIV 274 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCCEE
Confidence 99975 7888888887 89999888888754
No 113
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.48 E-value=6.9e-13 Score=78.48 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=84.3
Q ss_pred CCCCcCCCeEEcCCC----CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 5 GRSYVSSPPAFSNDV----KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 5 h~~~v~~~~~~~~~~----~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|.+.... ++|+-|- .+++.++ -|.|++.|..+++....+.+|++.|+.+.+.|+.+ .++++++.|..+
T Consensus 88 ~~Esfyt-csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~------qlvls~SkD~sv 160 (385)
T KOG1034|consen 88 HDESFYT-CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP------QLVLSASKDHSV 160 (385)
T ss_pred CCcceEE-EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC------cEEEEecCCceE
Confidence 4455555 7776543 3566666 69999999999998999999999999999999986 367799999999
Q ss_pred EEEeCCCCceEEEEec---CC-CEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDV---KF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~-~v~~~~~~~~~~~~~ 112 (112)
|+|++++..|+..+.+ |. .|.++.|+++|.+|.
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeee
Confidence 9999999999998864 44 899999999998763
No 114
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.48 E-value=3.5e-13 Score=79.71 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=68.9
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeec---cccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSL---EGHTAPVTTVIVVPASTPATKILSYCWTASLD 76 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 76 (112)
+.||.+.|.. +++.|+. +++++++ |.+|++|++++..++..+ .+|...|.++.|++++. ++++++.|
T Consensus 131 ~~ghG~sINe-ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-------~i~ScGmD 202 (385)
T KOG1034|consen 131 YRGHGGSINE-IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-------RIASCGMD 202 (385)
T ss_pred eeccCccchh-hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-------eeeccCCc
Confidence 4689999998 9999986 7888998 999999999999877665 56889999999999996 88899999
Q ss_pred CcEEEEeCCCC
Q 033738 77 ETIKYWDFSTP 87 (112)
Q Consensus 77 ~~i~~~~~~~~ 87 (112)
.++.+|++...
T Consensus 203 hslk~W~l~~~ 213 (385)
T KOG1034|consen 203 HSLKLWRLNVK 213 (385)
T ss_pred ceEEEEecChh
Confidence 99999998743
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.7e-12 Score=81.27 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=84.8
Q ss_pred ccCCCCCcCCCeEEcCC-CCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe-eecC
Q 033738 2 IRGGRSYVSSPPAFSND-VKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT-ASLD 76 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~-~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~d 76 (112)
+.+|...|.. ++|+|- ...||+|+ |+.|++||..++..+..+.. ...|..+.|++..+ . ++.+ |..+
T Consensus 339 ~~~H~aAVKA-~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~k---E---i~sthG~s~ 410 (484)
T KOG0305|consen 339 FTEHTAAVKA-LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYK---E---LLSTHGYSE 410 (484)
T ss_pred EeccceeeeE-eeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCC---E---EEEecCCCC
Confidence 4679999998 999996 47788875 79999999999988877663 56799999999874 2 3333 4456
Q ss_pred CcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 77 ETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
..|.+|++.+.+.+..+..|. .|..++++|||+.++
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 789999999988888888888 999999999998763
No 116
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.48 E-value=4.5e-13 Score=80.90 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=80.9
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|.||...|.- +.|+|.- +.|++++ |..|.+|++.+++.+..+. |...|.++.|+.+|. ++++.+.|..|
T Consensus 127 L~gH~rrVg~-V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-------~l~TtckDKkv 197 (472)
T KOG0303|consen 127 LYGHQRRVGL-VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-------LLCTTCKDKKV 197 (472)
T ss_pred EeecceeEEE-EeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc-------eeeeeccccee
Confidence 6899999987 9999975 5666666 9999999999998887877 999999999999994 78899999999
Q ss_pred EEEeCCCCceEEEEecCC--CEEEEEEcCCCc
Q 033738 80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKGF 109 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 109 (112)
|+||.++++.+..-..|. ....+.|-.+|.
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 999999998887765443 333344555554
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=1.1e-12 Score=83.27 Aligned_cols=102 Identities=14% Similarity=0.283 Sum_probs=85.4
Q ss_pred ccCCCCCcCCCeEE-cCCCCEEEEEc-CCeEEEEeCCCCce--e--------eecc-ccCCceEEEEEecCCCCccceeE
Q 033738 2 IRGGRSYVSSPPAF-SNDVKRLLVCT-SNTVSIFSTSTGLQ--I--------SSLE-GHTAPVTTVIVVPASTPATKILS 68 (112)
Q Consensus 2 ~~~h~~~v~~~~~~-~~~~~~l~~~~-~~~v~~~~~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 68 (112)
+..|.++|.+ ++. .++...+++|+ |+.|.+||++++.. + ..+. ++...+.+++..+.+ .
T Consensus 113 ir~H~DYVkc-la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-------t 184 (735)
T KOG0308|consen 113 IRTHKDYVKC-LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-------T 184 (735)
T ss_pred hhcccchhee-eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-------e
Confidence 4579999998 998 77888899999 99999999987621 1 2222 566778999999988 3
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+++|+..+.+++||.++++.+..+.+|. .|..+..++||..+
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ 228 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL 228 (735)
T ss_pred EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeE
Confidence 78899999999999999999998998887 99999999999654
No 118
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.47 E-value=3.9e-13 Score=80.68 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC---CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST---GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+.|.+.|.. +.|+.+-.+|++|+ ||++++||++. ++++..++-|..+|++++|+|... +.+++++.|.+
T Consensus 299 kAh~sDVNV-ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------s~iaasg~D~Q 371 (440)
T KOG0302|consen 299 KAHNSDVNV-ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------SVIAASGEDNQ 371 (440)
T ss_pred eccCCceee-EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------ceEEeccCCCc
Confidence 678899998 99999888899998 79999999975 456678999999999999999876 57779999999
Q ss_pred EEEEeCC
Q 033738 79 IKYWDFS 85 (112)
Q Consensus 79 i~~~~~~ 85 (112)
+.+||+.
T Consensus 372 itiWDls 378 (440)
T KOG0302|consen 372 ITIWDLS 378 (440)
T ss_pred EEEEEee
Confidence 9999975
No 119
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=5.1e-12 Score=75.69 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=78.5
Q ss_pred eEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc-EEEEeCCCCc
Q 033738 13 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET-IKYWDFSTPE 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~ 88 (112)
++.++++.+++.-+ .|.|.+||+.+-+....+..|.+.+-+++|+++|. ++++++..|+ ||++.+.+|+
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-------llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-------LLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-------EEEEeccCceEEEEEEcCCcc
Confidence 44445556887665 39999999998888889999999999999999995 8889998886 7899999999
Q ss_pred eEEEEecCC---CEEEEEEcCCCcEe
Q 033738 89 LLKTIDVKF---PIFSMVRGKKGFAV 111 (112)
Q Consensus 89 ~~~~~~~~~---~v~~~~~~~~~~~~ 111 (112)
.+..++-+. .+.+++|+|++++|
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeE
Confidence 999987654 78999999999876
No 120
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2e-12 Score=77.56 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=76.6
Q ss_pred CCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
..|.. +.|.+||..+++++ +..+.+||.+++..+.......+.+..+.||||++ ++.++.-|+..++|+.
T Consensus 196 ~pVts-mqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd-------~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 196 NPVTS-MQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD-------VLFAATCDAVFRLWQE 267 (445)
T ss_pred ceeeE-EEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC-------EEEEecccceeeeehh
Confidence 57776 99999999999998 69999999998875554444566788999999996 7779999999999965
Q ss_pred CC-CceEEEEecCCCEEEEEEcCCCcEe
Q 033738 85 ST-PELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 85 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.. ..+.+..-....|+..+|+|+|..+
T Consensus 268 ~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 268 NQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred cccceecceeccCCceeeeeecCCCCEE
Confidence 43 3333333344489999999999865
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=3.4e-13 Score=85.94 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=85.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-C-----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-S-----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
|.||...|++ ++.+|+|+++++++ . ..|++|+..+......+..|.-.|+.++|||+++ ++++.+.
T Consensus 521 LYGHGyEv~~-l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-------~LLsvsR 592 (764)
T KOG1063|consen 521 LYGHGYEVYA-LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-------YLLSVSR 592 (764)
T ss_pred hccCceeEEE-EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-------EEEEeec
Confidence 5789999998 99999999999886 2 5799999988777778999999999999999996 8889999
Q ss_pred CCcEEEEeCCCCce----EEEEecCC-CEEEEEEcCCCcEe
Q 033738 76 DETIKYWDFSTPEL----LKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 76 d~~i~~~~~~~~~~----~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|+++.+|...+... ....+.|. .|++..|+|++.++
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred CceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence 99999998654321 22245566 78999999999864
No 122
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.45 E-value=1.5e-12 Score=75.29 Aligned_cols=99 Identities=23% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
.+...+.. +-|+|-++.|++|. +|.|..||++++... ..-..|...++.++++++.. ++++++.|.+-++
T Consensus 145 t~~skit~-a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-------~FiT~s~Dttakl 216 (327)
T KOG0643|consen 145 TPDSKITS-ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-------YFITGSKDTTAKL 216 (327)
T ss_pred CCccceee-eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-------eEEecccCcccee
Confidence 34456666 88999999999998 899999999997544 45567888999999999994 8899999999999
Q ss_pred EeCCCCceEEEEecCCCEEEEEEcCCCcE
Q 033738 82 WDFSTPELLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
||.++-++++++....|+++.+++|..+.
T Consensus 217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred eeccceeeEEEeeecccccceecccccce
Confidence 99999999999999999999999996544
No 123
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=7.9e-13 Score=82.74 Aligned_cols=99 Identities=22% Similarity=0.156 Sum_probs=75.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----------------------------------------ce
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----------------------------------------LQ 40 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----------------------------------------~~ 40 (112)
+.+|.+.+.+ -+|+|||..|++++ ||.|++|.-... ..
T Consensus 100 v~AH~~A~~~-gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k 178 (737)
T KOG1524|consen 100 ISAHAAAISS-GRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK 178 (737)
T ss_pred hhhhhhhhhh-cccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc
Confidence 4678899997 99999999999998 999999964310 01
Q ss_pred eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738 41 ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 41 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
+-.++.|++-|.++.|++..+ ++++++.|=..++||.. |..+..-..+. ++++++|+|+..
T Consensus 179 ~i~WkAHDGiiL~~~W~~~s~-------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 179 IIRWRAHDGLVLSLSWSTQSN-------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred eeEEeccCcEEEEeecCcccc-------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccc
Confidence 234456888888889988874 78899999999999975 55555555444 788888888743
No 124
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.43 E-value=2.4e-13 Score=86.60 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=71.1
Q ss_pred CccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 1 MIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+|++|.+.|.. ++|+|-. +.|++++ |-+|++||+++++....+.+|.+.|..++|||+|+ .+++.+.||+
T Consensus 672 ~lt~h~eKI~s-lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-------~~AtVcKDg~ 743 (1012)
T KOG1445|consen 672 ILTIHGEKITS-LRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-------RIATVCKDGT 743 (1012)
T ss_pred eeecccceEEE-EEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc-------ceeeeecCce
Confidence 47889999997 9999964 6778888 99999999999988889999999999999999996 6779999999
Q ss_pred EEEEeCCCCc
Q 033738 79 IKYWDFSTPE 88 (112)
Q Consensus 79 i~~~~~~~~~ 88 (112)
+++|+.++++
T Consensus 744 ~rVy~Prs~e 753 (1012)
T KOG1445|consen 744 LRVYEPRSRE 753 (1012)
T ss_pred EEEeCCCCCC
Confidence 9999987653
No 125
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.43 E-value=3.1e-12 Score=81.67 Aligned_cols=94 Identities=28% Similarity=0.409 Sum_probs=80.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.||.+.+.+ +. -.+..+++|+ |.+|++|+++++..+..+.+|.++|.++... +. ++++++.|+.|+
T Consensus 287 l~gh~stv~~-~~--~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-------~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 287 LQGHTSSVRC-LT--IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-------LLVSGSYDGTVK 354 (537)
T ss_pred ecCCCceEEE-EE--ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-------EEEEEecCceEE
Confidence 5778887765 43 4456677777 9999999999999999998899999999987 42 778999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCC
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKK 107 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 107 (112)
+||+.+++++..+..|. +|+++.+.+.
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~ 382 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE 382 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc
Confidence 99999999999999988 9999977663
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.43 E-value=5.7e-13 Score=79.73 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=45.2
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP 58 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 58 (112)
|.||.+.|.+ ++=+|.. ..+++|+ ||.|++||+....+...+..|.+.|..+++..
T Consensus 62 L~gHrdGV~~-lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 62 LDGHRDGVSC-LAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred ccccccccch-hhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc
Confidence 5789999998 9999987 7888998 99999999987766667777776666665544
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.41 E-value=5.7e-12 Score=74.01 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=75.3
Q ss_pred CCcCCCeEEcCCC---CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 7 SYVSSPPAFSNDV---KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 7 ~~v~~~~~~~~~~---~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
+.|.. -++||-. .++++|. +-.|++.|+++|...+.+.+|...|.++.|+|... -++++++.||.+++|
T Consensus 144 ~~VYs-hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e------~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 144 GKVYS-HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE------WVLATGSADGAIRLW 216 (397)
T ss_pred ceeeh-hhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce------eEEEecCCCceEEEE
Confidence 45554 6677742 4556666 78999999999999999999999999999999875 357799999999999
Q ss_pred eCCCC-ceEEEEecC--------------C-CEEEEEEcCCCcEe
Q 033738 83 DFSTP-ELLKTIDVK--------------F-PIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~-~~~~~~~~~--------------~-~v~~~~~~~~~~~~ 111 (112)
|++.. .|...+..+ . .+..++|+.+|.++
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 99854 444444332 2 57888998888654
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=6.2e-12 Score=74.66 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=82.8
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+|.||...... ++-+|..+++++.+ |.+.++||.+. ...+..|.+|...|+...|..+. -+++++.|.+
T Consensus 309 ~LtGHd~ELtH-cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--------~vVSgSDDrT 379 (481)
T KOG0300|consen 309 ILTGHDSELTH-CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--------RVVSGSDDRT 379 (481)
T ss_pred cccCcchhccc-cccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC--------ceeecCCCce
Confidence 37889888887 88899999999999 99999999874 34567889999999999998887 4569999999
Q ss_pred EEEEeCCCC-ceEEEEecCCCEEEEEEcCCCcE
Q 033738 79 IKYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 79 i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
+++||+++. .++.++...++++.++.+..+..
T Consensus 380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPI 412 (481)
T ss_pred EEEeeeccccCcceeeecCCccceeEeecCCce
Confidence 999999874 46777777777777777665544
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.41 E-value=4.1e-11 Score=71.26 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=73.0
Q ss_pred CcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 8 YVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
.+.. +.|+|+++.++ ++. ++.+++||..+++....+..+.. +..++++|+++ .+++++..++.+++||+.
T Consensus 32 ~~~~-l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~------~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 32 RPRG-ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGK------ILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CCCc-eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCC------EEEEEcCCCCeEEEEECC
Confidence 3565 89999998764 555 79999999998876666654433 46788999985 234456678999999999
Q ss_pred CCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 86 TPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++.+..+..+..+..++|+|+|+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEE
Confidence 88877777655567889999999865
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.40 E-value=3.9e-12 Score=81.25 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=79.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
++||+..|.. +..-|++ .+++|+ |..|++|.- ++.++.+.+|...|..+++-++. .++++++||.|+
T Consensus 136 l~gH~asVWA-v~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--------~flScsNDg~Ir 203 (745)
T KOG0301|consen 136 LQGHTASVWA-VASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--------HFLSCSNDGSIR 203 (745)
T ss_pred cCCcchheee-eeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--------CeEeecCCceEE
Confidence 6789999987 8888877 777887 999999965 66788999999999999998886 466999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
+|++ +|+++.....|. -++++...+++.
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 9999 688888888877 788888444433
No 131
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.40 E-value=1.2e-12 Score=80.08 Aligned_cols=86 Identities=21% Similarity=0.294 Sum_probs=72.0
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
+|...+.+ +++++||++|++|+ |..+.+|+.++.+.+..+++|.+.|.+++|-.... -+++++.|+.+++|
T Consensus 200 ~h~keil~-~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~-------~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 200 GHVKEILT-LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS-------ELYSASADRSVKVW 271 (479)
T ss_pred cccceeEE-EEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc-------ceeeeecCCceEEE
Confidence 67788887 99999999999999 99999999999998999999999999999976552 45599999999999
Q ss_pred eCCCCceEEEEecCC
Q 033738 83 DFSTPELLKTIDVKF 97 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~ 97 (112)
++....-+.++.+|+
T Consensus 272 ~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQ 286 (479)
T ss_pred ehhHhHHHHHHhCCc
Confidence 987654444444443
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.40 E-value=2e-12 Score=80.49 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=80.1
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
.+++.. +.+.|||+.|++|+ -.++.+||+.... ....+....-....++.+||.+ ..+++..||.|.+|
T Consensus 465 dnyiRS-ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDak-------vcFsccsdGnI~vw 536 (705)
T KOG0639|consen 465 DNYIRS-CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-------VCFSCCSDGNIAVW 536 (705)
T ss_pred ccceee-eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-------eeeeeccCCcEEEE
Confidence 356776 89999999999999 6899999997643 2234444334456888999985 66799999999999
Q ss_pred eCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 83 DFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|+.+...++.+.+|. .+.++..+++|..|
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtkl 566 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKL 566 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCcee
Confidence 999999999999987 89999999999765
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.37 E-value=8.2e-13 Score=84.24 Aligned_cols=98 Identities=21% Similarity=0.340 Sum_probs=80.9
Q ss_pred CCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 7 SYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 7 ~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
..|.+ +.|.| |.+.|+.++ |+.|++|.+..+ .....++.|...|+.+.|+|-.. ..+++++.|.
T Consensus 628 t~vtD-l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa------dvLa~asyd~ 700 (1012)
T KOG1445|consen 628 TLVTD-LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA------DVLAVASYDS 700 (1012)
T ss_pred ceeee-cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh------hHhhhhhccc
Confidence 35676 88998 668888887 899999998653 23356678889999999999753 2566999999
Q ss_pred cEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 78 TIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+|++||+.++.....+..|. .+..++|+|+|+.+
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 99999999998888888887 99999999999865
No 134
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.6e-12 Score=79.60 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=67.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|+||++.|.+ +.|+.+|.+|++|+ |..+.+||....+.+..+ ++|...|.++.|-|... + .+++++..|..|
T Consensus 46 L~GH~GCVN~-LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn--n---riv~sgAgDk~i 119 (758)
T KOG1310|consen 46 LTGHTGCVNC-LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN--N---RIVLSGAGDKLI 119 (758)
T ss_pred hccccceecc-eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC--C---eEEEeccCcceE
Confidence 6899999998 99999999999999 799999998776666655 57999999999998753 2 255699999999
Q ss_pred EEEeCCC
Q 033738 80 KYWDFST 86 (112)
Q Consensus 80 ~~~~~~~ 86 (112)
+++|+..
T Consensus 120 ~lfdl~~ 126 (758)
T KOG1310|consen 120 KLFDLDS 126 (758)
T ss_pred EEEeccc
Confidence 9999874
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.35 E-value=9.1e-11 Score=69.79 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=70.0
Q ss_pred cCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCceeeeccccC-----C--ceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 9 VSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQISSLEGHT-----A--PVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
... +.|+|+++.++.+ . ++.+++||+++++....+..+. . ....++++|+++ ..+++.+.++.+
T Consensus 159 ~~~-~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~------~~~~~~~~~~~i 231 (300)
T TIGR03866 159 PRF-AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK------TAFVALGPANRV 231 (300)
T ss_pred ccE-EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC------EEEEEcCCCCeE
Confidence 344 7899999988655 4 7999999999887655543211 1 224678999985 123344556789
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
.+||.++++.......+..+.+++|+|+|+++|
T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred EEEECCCCcEEEEEEeCCCcceEEECCCCCEEE
Confidence 999999888776665555888999999998774
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.9e-12 Score=72.85 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=78.5
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEe-cCCCCccceeEEEEeeecCC
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVV-PASTPATKILSYCWTASLDE 77 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~d~ 77 (112)
++|.+.|.. ....--|++|++++ |++|+++..+.. +.+..+.+|.++|..++|. |.-. .++++++.|+
T Consensus 8 t~H~D~IHd-a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G------~iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHD-AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG------TILASCSYDG 80 (299)
T ss_pred hhhhhhhhH-hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC------cEeeEeecCc
Confidence 568888887 77777899999998 999999998763 4567889999999999995 4432 4888999999
Q ss_pred cEEEEeCCCCceEEE--EecCC-CEEEEEEcCCCc
Q 033738 78 TIKYWDFSTPELLKT--IDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~--~~~~~-~v~~~~~~~~~~ 109 (112)
.+.+|...+|+-.+. ...|. .|++++|.|.+.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey 115 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY 115 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeeccccccc
Confidence 999999988743322 23344 889998888654
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=75.59 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=79.0
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
.+.+.+ +.-+|+|.+|+.|+ .+.+++|.+.+|..+..+..|...++++.|+.|+. ++++++.||.+.+|.+
T Consensus 81 Pg~v~a-l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-------~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHA-LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-------HIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceee-eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-------EEEecCCCccEEEEEE
Confidence 356776 88999999999998 89999999999998899999999999999999994 7889999999999975
Q ss_pred C---------CCceEEEEecCC-CEEEEEEcCC
Q 033738 85 S---------TPELLKTIDVKF-PIFSMVRGKK 107 (112)
Q Consensus 85 ~---------~~~~~~~~~~~~-~v~~~~~~~~ 107 (112)
. +-+++..+..|. +|+++...+.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCC
Confidence 3 234566677776 8888876554
No 138
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.34 E-value=3.7e-13 Score=87.64 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=89.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|.||.+.|.| ..+...|.++++|+ |..+++|...++.++..+.+|.+.++.++.+... ..+++++.|..|+
T Consensus 186 LlgH~naVyc-a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-------~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 186 LLGHRNAVYC-AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-------TMIAAASNDKVIR 257 (1113)
T ss_pred HHhhhhheee-eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-------hhhhhcccCceEE
Confidence 4689999998 99999999999999 7999999999999999999999999999988776 3677999999999
Q ss_pred EEeCCCCceEEEEecCC-CEEEEEEcCC
Q 033738 81 YWDFSTPELLKTIDVKF-PIFSMVRGKK 107 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 107 (112)
+|.+.++.++..+.+|. .|++++|+|-
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~ 285 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPR 285 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCcc
Confidence 99999999999999887 9999999974
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=80.30 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=65.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i 79 (112)
|.||.+.+++ ++|||||++|++++ |++|++||+.++..+..+. -..+...+.++|+++ ++++...| .-|
T Consensus 572 f~gh~nritd-~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD-------~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 572 FWGHGNRITD-MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGD-------FLATVHVDQNGI 642 (910)
T ss_pred hhccccceee-eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCC-------EEEEEEecCceE
Confidence 5799999998 99999999999999 9999999999998887665 346678999999996 88899888 569
Q ss_pred EEEeCC
Q 033738 80 KYWDFS 85 (112)
Q Consensus 80 ~~~~~~ 85 (112)
++|--.
T Consensus 643 ylWsNk 648 (910)
T KOG1539|consen 643 YLWSNK 648 (910)
T ss_pred EEEEch
Confidence 999533
No 140
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.32 E-value=3.3e-11 Score=73.27 Aligned_cols=106 Identities=16% Similarity=0.362 Sum_probs=78.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE------------
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS------------ 68 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------ 68 (112)
|.|..+.+.. +.+.+++..+++++ |+.+++|++...+....+.+|...|+++.+..... .+++
T Consensus 215 LaGs~g~it~-~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 215 LAGSLGNITS-IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDL 290 (459)
T ss_pred hhccCCCcce-eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhh
Confidence 4566677887 99999998888887 99999999999888889999998888887765442 1111
Q ss_pred -----------------------EEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 69 -----------------------YCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 69 -----------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.++++-.|+.|++||.+.+.+....+.+..|.++..+++|..+
T Consensus 291 ~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~l 356 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLEL 356 (459)
T ss_pred hhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEE
Confidence 2344555667777777777777777766677777777777544
No 141
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.32 E-value=2.2e-11 Score=74.73 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=84.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCcee----ee------------c--cccCCceEEEEEecCCCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI----SS------------L--EGHTAPVTTVIVVPASTP 62 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~----~~------------~--~~~~~~v~~~~~~~~~~~ 62 (112)
+..|.-.+.+ +.++||..+.++++ +++|.-|++.+++.. .. . +.|...+.+++.+++++
T Consensus 138 ~~~H~~s~~~-vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 138 IGKHQLSVTS-VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eccccCcceE-EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 3568888887 99999999999999 999999998776522 00 0 25667889999999996
Q ss_pred ccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 63 ATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 63 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|+++++.|..+.+|+.++.+.+..+..|. .|.+++|-.....+
T Consensus 216 ------ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 216 ------YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred ------EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccce
Confidence 99999999999999999999999999888 89999886554443
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.32 E-value=3.7e-11 Score=70.68 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=82.0
Q ss_pred CCCCCcCCCeEEcCCCCE-EEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 4 GGRSYVSSPPAFSNDVKR-LLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~-l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+|.-.|.. +-|-|-..- +.+++ |.++++||.++.+....|+ -++.|...+++|-.. .- ++++++..+..+++
T Consensus 99 ~Hky~iss-~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~---sH-cLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 99 GHKYAISS-AIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM---SH-CLIAAGTRDVQVRL 172 (397)
T ss_pred cceeeeee-eEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh---cc-eEEEEecCCCcEEE
Confidence 56667776 889986554 44556 9999999999887666665 456688888988642 11 36789999999999
Q ss_pred EeCCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.|+.+|.....+.+|. .|.++.|+|..+++
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~v 203 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWV 203 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeE
Confidence 9999999999999988 99999999998876
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=3e-11 Score=79.24 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=82.3
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
+-.+.+ ++++.+|+.++.|+ |-.|++.+.........+.+|.++|.++.++|.+. ++++..-||.+++||+
T Consensus 96 tlp~r~-~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~-------fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 96 TLPIRD-LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN-------FLAVSSCDGKVQIWDL 167 (933)
T ss_pred eccceE-EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC-------EEEEEecCceEEEEEc
Confidence 445666 89999999999999 89999999988878889999999999999999995 8889999999999999
Q ss_pred CCCceEEEEec---------CCCEEEEEEcCCCcE
Q 033738 85 STPELLKTIDV---------KFPIFSMVRGKKGFA 110 (112)
Q Consensus 85 ~~~~~~~~~~~---------~~~v~~~~~~~~~~~ 110 (112)
.++.+..++.. ...+..++|+|+|..
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 99877665542 125778899999543
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=7.8e-11 Score=74.70 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=52.8
Q ss_pred CccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCC
Q 033738 1 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 61 (112)
++.||++.|.+ +...|.|.+|++|+ ||+|++|.+.++.++..+.- .+.|.+++|+|...
T Consensus 395 vyrGHtg~Vr~-iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 395 VYRGHTGLVRS-ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSD 454 (733)
T ss_pred eEeccCCeEEE-EEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCC
Confidence 36799999998 99999999999999 89999999999999887763 46799999999875
No 145
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4.6e-11 Score=68.67 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=64.4
Q ss_pred CcCCCeEEcCCCCEEEEE-cCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 8 YVSSPPAFSNDVKRLLVC-TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
.|+. +.+.|..+.++.+ +|+.++.||+++|+..+.+++|...+.++.-..... -+++++.||++|+||.++
T Consensus 116 eINa-m~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-------qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 116 EINA-MWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-------QILSGAEDGTVRVWDTKT 187 (325)
T ss_pred ccce-eEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-------ceeecCCCccEEEEeccc
Confidence 4565 7788876555544 599999999999998899999999999987743332 455999999999999999
Q ss_pred CceEEEEe
Q 033738 87 PELLKTID 94 (112)
Q Consensus 87 ~~~~~~~~ 94 (112)
++++.++.
T Consensus 188 ~k~v~~ie 195 (325)
T KOG0649|consen 188 QKHVSMIE 195 (325)
T ss_pred cceeEEec
Confidence 99988775
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.31 E-value=6.9e-12 Score=72.54 Aligned_cols=69 Identities=26% Similarity=0.290 Sum_probs=63.3
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
.+.. +++-||++.+++++ |+.+++|..++.+++..++-|.+.|++++|+|+.. ++++++.|.+|.+|++
T Consensus 253 Gv~g-vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-------lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 253 GVSG-VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-------LMAAASKDARISLWKL 322 (323)
T ss_pred Cccc-eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-------hhhhccCCceEEeeec
Confidence 3555 88999999999999 99999999999999999999999999999999974 7889999999999986
No 147
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.5e-11 Score=74.46 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=70.5
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-- 76 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-- 76 (112)
..|...+.. ++|+|||+.|+..+ +..|++||+.+++. ..+....+.+...+|+|+++ +++ ++.+.+
T Consensus 198 t~~~~~v~~-p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~---~la---~~~~~~g~ 269 (435)
T PRK05137 198 TDGSSLVLT-PRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR---KVV---MSLSQGGN 269 (435)
T ss_pred ecCCCCeEe-eEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC---EEE---EEEecCCC
Confidence 445667776 99999999988765 36899999988753 44444555667889999995 232 344444
Q ss_pred CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 77 ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
..|++||+.++................|+|||+.+
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred ceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence 45888899877654433333356678999999865
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.31 E-value=1.2e-11 Score=79.18 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=76.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc----eeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD 76 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 76 (112)
|++|.-.|.. ++|||||++|++.+ |.++.+|...... .....+.|..-|+.+.|+|++. +++|+++|
T Consensus 568 L~~HsLTVT~-l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-------~FaTaSRD 639 (764)
T KOG1063|consen 568 LEGHSLTVTR-LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-------YFATASRD 639 (764)
T ss_pred ecccceEEEE-EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-------eeEEecCC
Confidence 6789889998 99999999999999 9999999875321 2234677888899999999996 78999999
Q ss_pred CcEEEEeCCCC--ceEEE---EecCCCEEEEEEcC
Q 033738 77 ETIKYWDFSTP--ELLKT---IDVKFPIFSMVRGK 106 (112)
Q Consensus 77 ~~i~~~~~~~~--~~~~~---~~~~~~v~~~~~~~ 106 (112)
..+.+|...+. +.+.. .+....|+++++.|
T Consensus 640 K~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 640 KKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred ceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 99999988766 33322 23334788887765
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.3e-10 Score=73.00 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=65.7
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe-eecCC
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT-ASLDE 77 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~d~ 77 (112)
..|...+.. ++|+|||+.+++.+ + ..|++||+.+++.. .+....+.....+|+|+++ .++. ...++
T Consensus 200 t~~~~~v~~-p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~-------~La~~~~~~g 270 (429)
T PRK01742 200 NRSSQPLMS-PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGS-------RLAFASSKDG 270 (429)
T ss_pred ccCCCcccc-ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCC-------EEEEEEecCC
Confidence 456667777 99999999998776 2 47999999877532 2222222334689999995 3333 34566
Q ss_pred cE--EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 78 TI--KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 78 ~i--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.. ++||..++...........+.++.|+|+|+.+
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSI 306 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEE
Confidence 54 45577666554333333367889999999865
No 150
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.30 E-value=2.5e-11 Score=71.14 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc-----------------------------------------
Q 033738 3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL----------------------------------------- 39 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~----------------------------------------- 39 (112)
-+|...|.. ++|..++ +.+++.+ ||++++||++..+
T Consensus 193 IAHDKEV~D-Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 193 IAHDKEVYD-IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EecCcceeE-EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 358889998 9999876 5677777 9999999997321
Q ss_pred -------eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc------eEEEEecCCCEEEEEEcC
Q 033738 40 -------QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE------LLKTIDVKFPIFSMVRGK 106 (112)
Q Consensus 40 -------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------~~~~~~~~~~v~~~~~~~ 106 (112)
.+..+..|++.|+.++|.|... +.+.+++.|.+..+||+.+.. ++........|+.+.|++
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~------~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSS------SHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS 345 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCC------ceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence 2456678999999999999886 355599999999999987532 233334455888899985
Q ss_pred C
Q 033738 107 K 107 (112)
Q Consensus 107 ~ 107 (112)
.
T Consensus 346 ~ 346 (364)
T KOG0290|consen 346 S 346 (364)
T ss_pred c
Confidence 3
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.29 E-value=4.2e-11 Score=77.11 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=72.5
Q ss_pred CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738 8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 87 (112)
.|.. ++|.|||..|+.+.+..+.+||.+.|..+..+++|...|.+++|+.+|. .+++|+.|..+.+|+..-
T Consensus 14 ci~d-~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-------rFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CIND-IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-------RFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chhe-eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCc-------eeccCCCceeEEEecccc-
Confidence 5777 9999999999888889999999999999999999999999999999996 788999999999998542
Q ss_pred ceEEEEecCCCEEEEEEcCC
Q 033738 88 ELLKTIDVKFPIFSMVRGKK 107 (112)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~ 107 (112)
+-+........++++.|+|-
T Consensus 85 EG~LkYSH~D~IQCMsFNP~ 104 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSFNPI 104 (1081)
T ss_pred cceeeeccCCeeeEeecCch
Confidence 11122222235555555553
No 152
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.8e-11 Score=68.49 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=77.5
Q ss_pred ccCCCCCcCCCeEEcC--CCCEEEEEc-CCeEEEEeCCCCc--eeeeccccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738 2 IRGGRSYVSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD 76 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~--~~~~l~~~~-~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 76 (112)
|.||.++|.. ++|.. -|..|++++ |+.|.+|.-..++ .......|...|++++|.|.+. - ..+++++.|
T Consensus 52 L~Gh~GPVwq-v~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----g-l~LacasSD 125 (299)
T KOG1332|consen 52 LTGHSGPVWK-VAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----G-LLLACASSD 125 (299)
T ss_pred ecCCCCCeeE-EeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc----c-eEEEEeeCC
Confidence 6899999998 99865 589999999 9999999987663 2345567899999999999873 1 257899999
Q ss_pred CcEEEEeCCCC--ceEEE-EecCC-CEEEEEEcCC
Q 033738 77 ETIKYWDFSTP--ELLKT-IDVKF-PIFSMVRGKK 107 (112)
Q Consensus 77 ~~i~~~~~~~~--~~~~~-~~~~~-~v~~~~~~~~ 107 (112)
|.|.+.+++.. ..... ...|. .|++++|.|.
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99999988753 22222 23344 8999999986
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=4.6e-11 Score=76.20 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc----c----cCCceEEEEEecCCCCccceeEEEEeeec
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE----G----HTAPVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~----~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
.++++.+ ++|+|++..+++|+ ||.|++||..++......+ . ...-|+++.+-.++ .+++|..
T Consensus 153 q~sRvLs-lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------tI~sgDS 223 (691)
T KOG2048|consen 153 QKSRVLS-LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------TIASGDS 223 (691)
T ss_pred ccceEEE-EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--------cEEEecC
Confidence 3577887 99999999999999 9999999998876554221 1 22235666665555 6679999
Q ss_pred CCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 76 DETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 76 d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
.|.+.+||...|..++.+..+. .|.+++-.++++++|
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 9999999999999888888776 899999988877664
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=5.5e-11 Score=70.63 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=76.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----c---eeeec----cccCCceEEEEEecCCCCccceeEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----L---QISSL----EGHTAPVTTVIVVPASTPATKILSY 69 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~---~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~ 69 (112)
|+||...|.. ++|+++.+.+++.+ ||+.++||++-. + .++.. ....+....++++|.+. .
T Consensus 274 LkGH~saV~~-~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-------~ 345 (420)
T KOG2096|consen 274 LKGHQSAVLA-AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-------S 345 (420)
T ss_pred eccchhheee-eeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-------E
Confidence 6899999998 99999999999999 999999998631 1 11111 12234445889999995 2
Q ss_pred EEeeecCCcEEEEeCCCCceEEEEec-CC-CEEEEEEcCCCcEe
Q 033738 70 CWTASLDETIKYWDFSTPELLKTIDV-KF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~~ 111 (112)
++.+....++++..++|+....+.. |. .+.+++|+++|+++
T Consensus 346 -lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 346 -LAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred -EEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 2455566899999988877666543 44 89999999999886
No 155
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.5e-10 Score=72.71 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+...+.. ++|+|||+.|+..+ +..+.+|++.+++. ..+....+.....+|+|++. +++ +......+..|+
T Consensus 197 ~~~~~~~-p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~---~La-~~~~~~g~~~I~ 270 (429)
T PRK03629 197 SPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS---KLA-FALSKTGSLNLY 270 (429)
T ss_pred CCCceee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECCCCC---EEE-EEEcCCCCcEEE
Confidence 3445666 99999999988654 35799999987753 33332333345689999995 232 222222334699
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+||+.+++.......+..+..+.|+|+|+.|
T Consensus 271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred EEECCCCCEEEccCCCCCcCceEECCCCCEE
Confidence 9999888765554444467789999999865
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.26 E-value=2.9e-11 Score=71.78 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=73.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCC-ceeeeccccCC---ceEEEEEecCCCCccceeEEEEeeec
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTG-LQISSLEGHTA---PVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~-~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
+-||.+-|+. +.|.++|+.|.+|. +..|..||++.. .++..+..|.. .--.....|++. ++++++.
T Consensus 246 lggh~gGvTh-L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-------~LasG~t 317 (406)
T KOG2919|consen 246 LGGHGGGVTH-LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-------ILASGDT 317 (406)
T ss_pred ecccCCCeee-EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-------eeeccCC
Confidence 4579999998 99999999999998 799999999864 34445554433 112335567775 7889999
Q ss_pred CCcEEEEeCCC-CceEEEEecCC-CEEEEEEcCC
Q 033738 76 DETIKYWDFST-PELLKTIDVKF-PIFSMVRGKK 107 (112)
Q Consensus 76 d~~i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~ 107 (112)
||.|++||+++ |..+..+..+. .++.++++|-
T Consensus 318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred CccEEEEecCCCCCcccccccccccccceecCcc
Confidence 99999999987 66566655554 6777777764
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4.2e-10 Score=66.49 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=74.9
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
.+|.+.+.+ +.|.+-|+++++++ |+++++||.+.. .+....+.|.+.|..+.|.+..- . -.+++++.|+
T Consensus 10 s~h~Dlihd-Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf--G---qvvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHD-VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF--G---QVVATCSYDR 83 (361)
T ss_pred cCCcceeee-eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc--c---ceEEEEecCC
Confidence 578888998 99999999999998 999999996432 45567788999999999965431 0 2678999999
Q ss_pred cEEEEeCCC------C-c--eEEEEecCC-CEEEEEEcCCC
Q 033738 78 TIKYWDFST------P-E--LLKTIDVKF-PIFSMVRGKKG 108 (112)
Q Consensus 78 ~i~~~~~~~------~-~--~~~~~~~~~-~v~~~~~~~~~ 108 (112)
++.+|.-.. + + ...++.... .|+.+.|.|.-
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence 999996521 1 1 122333333 89999998853
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.25 E-value=2e-10 Score=67.51 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=73.6
Q ss_pred CCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCce---eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 5 GRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQ---ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 5 h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+...++. ..|+. |-+++.+++ |.++-+||++++.. ..++-.|..+|..++|...+. ..+++.+.||.+
T Consensus 149 ~~aPlTS-FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~------~~FASvgaDGSv 221 (364)
T KOG0290|consen 149 FCAPLTS-FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR------DVFASVGADGSV 221 (364)
T ss_pred cCCcccc-cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc------ceEEEecCCCcE
Confidence 3455665 88875 557888888 99999999998633 467778999999999998664 377899999999
Q ss_pred EEEeCCCCceEEEEec----CCCEEEEEEcCCC
Q 033738 80 KYWDFSTPELLKTIDV----KFPIFSMVRGKKG 108 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~ 108 (112)
|++|++..+....+-. +.+...++|++..
T Consensus 222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999997655444322 2267777887654
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.8e-11 Score=73.33 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=64.2
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
++++++|..+++++ ||.+|+|+..+...+.....|.+.|.++.|+||+. .+++.+.| ..++|+..+|.++.
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-------~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-------FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-------EEEEecCC-ceEEEEeccCchhh
Confidence 89999999999998 99999999777666667778899999999999995 67788888 99999999996665
Q ss_pred EEe
Q 033738 92 TID 94 (112)
Q Consensus 92 ~~~ 94 (112)
...
T Consensus 222 ~~t 224 (398)
T KOG0771|consen 222 RKT 224 (398)
T ss_pred hcC
Confidence 544
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.24 E-value=1.5e-10 Score=67.92 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCCCcCCCeEEcCCCCE-EEEEc-CCeEEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 4 GGRSYVSSPPAFSNDVKR-LLVCT-SNTVSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~-l~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+|...|.. +.|+|+.+. |++++ |+.|++||.+. ..++..+.+|...|+++.|+|... -++++++.|..+.
T Consensus 212 AHgq~vrd-lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd------qLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 212 AHGQRVRD-LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD------QLILSGGSDSAVN 284 (370)
T ss_pred hhcceeee-ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc------eEEEecCCCceeE
Confidence 57777887 999999865 56666 79999999976 456688899999999999999765 2566999999999
Q ss_pred EEeCCCC-----------------------------ceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 81 YWDFSTP-----------------------------ELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~-----------------------------~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
+|....- ..+.++..|. .|++++|+....++|
T Consensus 285 Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 285 LSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred EEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 9853210 0123444454 899999997766654
No 161
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.7e-10 Score=71.69 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
.+...+.. ++|+|||+.|+..+ + ..+++||+.+++. ..+....+.....+|+|+++ +++ +..+...+..|
T Consensus 201 ~~~~~v~~-p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~---~l~-~~~s~~g~~~I 274 (433)
T PRK04922 201 RSAEPILS-PAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGR---RLA-LTLSRDGNPEI 274 (433)
T ss_pred cCCCcccc-ccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCC---EEE-EEEeCCCCceE
Confidence 44556776 99999999998776 2 4799999987753 33333334445789999995 332 22222334469
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++||+.+++.............++|+|+|+.+
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 99999888754433322345678999999865
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=7.5e-10 Score=70.88 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=80.2
Q ss_pred ccCCCC-CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRS-YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~-~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.|+.+ .+.. ++|++.++++-++.+|.|..||+.++++........+.++.++.+|.+. .++.++.||.++
T Consensus 64 i~g~~drsIE~-L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~-------~l~IgcddGvl~ 135 (691)
T KOG2048|consen 64 IHGPEDRSIES-LAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT-------ILAIGCDDGVLY 135 (691)
T ss_pred EecCCCCceee-EEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccc-------eEEeecCCceEE
Confidence 456554 4555 9999656555444599999999999999999999999999999999984 667888999888
Q ss_pred EEeCCCCceEEEEec---CCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDV---KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~ 111 (112)
.++...+........ .+.+.++.|+|++..+
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 888877766544432 3489999999998754
No 163
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=7.8e-10 Score=63.25 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=76.3
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
..|.. +++.|.|++|++|. |.++-+||++.++.+..+..|...|.++.|+|... |+++++.|..|++-|+.
T Consensus 232 savaa-v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-------yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 232 SAVAA-VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-------YLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ceeEE-EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-------EEEEecccceEEEeecc
Confidence 45665 89999999999998 99999999999999999999999999999999985 88899999999999886
Q ss_pred CC----ceEEEEecCC-CEEEEEEcCCC
Q 033738 86 TP----ELLKTIDVKF-PIFSMVRGKKG 108 (112)
Q Consensus 86 ~~----~~~~~~~~~~-~v~~~~~~~~~ 108 (112)
.. .++.....|. .+-.+.|+|..
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCcc
Confidence 31 2233333343 56667888764
No 164
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=6.1e-11 Score=71.67 Aligned_cols=84 Identities=24% Similarity=0.346 Sum_probs=70.3
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
-||-..+.+ ++|+||+++++++. |+.|++-.......+..+ .+|..-|..++.-++. .+++++.|++++
T Consensus 148 lGhvSml~d-VavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--------~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLD-VAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--------LLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhhe-eeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--------eeeecCCCCcEE
Confidence 578889998 99999999999999 999999877655455544 4688889999987776 467999999999
Q ss_pred EEeCCCCceEEEEec
Q 033738 81 YWDFSTPELLKTIDV 95 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (112)
+||+.+|+++.++..
T Consensus 219 ~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 219 LWDITSGKLLDTCDL 233 (390)
T ss_pred EEecccCCcccccch
Confidence 999999998866654
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.2e-11 Score=81.14 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=78.4
Q ss_pred cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
..|++.|.. +.|++.. +.|++|+ +|.|.+||++..+...... .....|.+++|+..-. -++++++.+|+
T Consensus 113 ~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq------hILAS~s~sg~ 185 (1049)
T KOG0307|consen 113 SKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS------HILASGSPSGR 185 (1049)
T ss_pred cccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh------HHhhccCCCCC
Confidence 569999998 9999976 5888888 8999999998754433331 1356789999987652 25568999999
Q ss_pred EEEEeCCCCceEEEEecCC---CEEEEEEcCCCc
Q 033738 79 IKYWDFSTPELLKTIDVKF---PIFSMVRGKKGF 109 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 109 (112)
..+||++..+.+..+..+. .+..+.|+|+..
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 9999999888777776655 488999999874
No 166
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=3.3e-10 Score=66.69 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=72.5
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
.+.|.. +.|+|.++.|+.++ ||++++||..... +.....+++++.+++|.++. .+++++.||.|+.+|+
T Consensus 13 ~d~IS~-v~f~~~~~~LLvssWDgslrlYdv~~~~-l~~~~~~~~plL~c~F~d~~--------~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISS-VKFSPSSSDLLVSSWDGSLRLYDVPANS-LKLKFKHGAPLLDCAFADES--------TIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceee-EEEcCcCCcEEEEeccCcEEEEeccchh-hhhheecCCceeeeeccCCc--------eEEEeccCceEEEEEe
Confidence 456776 99999887777777 9999999998664 44444588999999998865 5669999999999999
Q ss_pred CCCceEEEEecCCCEEEEEEcCCC
Q 033738 85 STPELLKTIDVKFPIFSMVRGKKG 108 (112)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~ 108 (112)
.++.....-.+..++.++.+++..
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccC
Confidence 988765554444588888887543
No 167
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=6.3e-10 Score=63.13 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=58.2
Q ss_pred CCCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec------
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL------ 75 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (112)
...+.. +.|+|+|++++.++ .|.+.+||.++.+.+.... + ..+..++|+|+|+ +++++..
T Consensus 100 ~~~~n~-i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr-------~~~ta~t~~r~~~ 169 (194)
T PF08662_consen 100 TQPRNT-ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGR-------YLATATTSPRLRV 169 (194)
T ss_pred CCCceE-EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCC-------EEEEEEeccceec
Confidence 455666 99999999999886 3789999999877766654 2 3468999999996 5555543
Q ss_pred CCcEEEEeCCCCceEEEEe
Q 033738 76 DETIKYWDFSTPELLKTID 94 (112)
Q Consensus 76 d~~i~~~~~~~~~~~~~~~ 94 (112)
|..+++|++. |+.+....
T Consensus 170 dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 170 DNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred cccEEEEEec-CeEeEecc
Confidence 6788999985 66655443
No 168
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=4.8e-10 Score=66.04 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=70.5
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
|..++.+ ++|.+ ...+++|+ |+.|+++|+.+++ ...+..|..++.++..++... -++++++|++|++||
T Consensus 53 ~~~plL~-c~F~d-~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~-------~vIsgsWD~~ik~wD 122 (323)
T KOG1036|consen 53 HGAPLLD-CAFAD-ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVG-------CVISGSWDKTIKFWD 122 (323)
T ss_pred cCCceee-eeccC-CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCC-------eEEEcccCccEEEEe
Confidence 6778887 88876 45566777 9999999999885 556667999999999997663 566999999999999
Q ss_pred CCCCceEEEEecCCCEEEEEEc
Q 033738 84 FSTPELLKTIDVKFPIFSMVRG 105 (112)
Q Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~ 105 (112)
.+.......+.....|.++...
T Consensus 123 ~R~~~~~~~~d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 123 PRNKVVVGTFDQGKKVYCMDVS 144 (323)
T ss_pred ccccccccccccCceEEEEecc
Confidence 9875555555555566666543
No 169
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.19 E-value=3e-11 Score=72.58 Aligned_cols=95 Identities=8% Similarity=0.139 Sum_probs=77.1
Q ss_pred CCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738 10 SSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 10 ~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 87 (112)
.. ++|+|++-.+.+++ |..++.+|++.- .++....+|.+.|..++|+|.|. -+++++.|.+|++|....+
T Consensus 233 N~-IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~-------EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 233 NT-ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ-------EFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cc-eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc-------hhccccccceEEEeecCCC
Confidence 44 89999777777888 899999998763 45677788999999999999995 5669999999999999877
Q ss_pred ceEEEEec--CCCEEEEEEcCCCcEeC
Q 033738 88 ELLKTIDV--KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 88 ~~~~~~~~--~~~v~~~~~~~~~~~~~ 112 (112)
..-..... .+.|.++.|+-|.++++
T Consensus 305 ~SRdiYhtkRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 305 HSRDIYHTKRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred cchhhhhHhhhheeeEEEEeccccEEE
Confidence 65444332 23899999999988874
No 170
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=6.4e-10 Score=67.63 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=77.8
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-------------------------------------
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL------------------------------------- 44 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~------------------------------------- 44 (112)
..|...|.+ +.|+|||+.|++.+ | ..++|+.+++..+...
T Consensus 183 ~~~~~eV~D-L~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 183 IAHHAEVKD-LDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred HhhcCcccc-ceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeE
Confidence 457889998 99999999999998 6 9999999876110000
Q ss_pred ------c-----------ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec-CC-CEEEEEEc
Q 033738 45 ------E-----------GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV-KF-PIFSMVRG 105 (112)
Q Consensus 45 ------~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~-~v~~~~~~ 105 (112)
. .....+.+++.+++|+ +++-++.||.+.+++..+-+++...+. |. .|+.+.|+
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcCCCc-------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEc
Confidence 0 0123578899999996 888999999999999988777776654 44 89999999
Q ss_pred CCCcEe
Q 033738 106 KKGFAV 111 (112)
Q Consensus 106 ~~~~~~ 111 (112)
|+.+++
T Consensus 334 Pdsr~~ 339 (398)
T KOG0771|consen 334 PDSRYL 339 (398)
T ss_pred CCcCcc
Confidence 998764
No 171
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=3.7e-10 Score=66.82 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=66.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CC-eEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SN-TVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~-~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
+.+|...+.+ ++++-+|..+++++ .| -||+||..+|..+..+.. ....+.+++|||+.. +++..+..|
T Consensus 177 I~AH~s~Iac-v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-------~LavsSdKg 248 (346)
T KOG2111|consen 177 INAHDSDIAC-VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-------WLAVSSDKG 248 (346)
T ss_pred EEcccCceeE-EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-------EEEEEcCCC
Confidence 5789999998 99999999999999 54 579999999988887764 345689999999994 888999999
Q ss_pred cEEEEeCCC
Q 033738 78 TIKYWDFST 86 (112)
Q Consensus 78 ~i~~~~~~~ 86 (112)
+++++.++.
T Consensus 249 TlHiF~l~~ 257 (346)
T KOG2111|consen 249 TLHIFSLRD 257 (346)
T ss_pred eEEEEEeec
Confidence 999998764
No 172
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=3.6e-10 Score=73.36 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=83.6
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc---cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG---HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
.+++ +++.|..+++++++ |..|++|++++++..+.|++ +++..-.+...|.+ .|+++.+.|.++.++|
T Consensus 598 TlYD-m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-------iY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 598 TLYD-MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-------IYLATSCSDKTLCFVD 669 (1080)
T ss_pred eEEE-eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-------cEEEEeecCCceEEEE
Confidence 4566 88899999999998 99999999999998888875 45566678888998 4999999999999999
Q ss_pred CCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 84 FSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
+.+|+++.+..+|+ .|+.+.|.+|=+.|
T Consensus 670 f~sgEcvA~m~GHsE~VTG~kF~nDCkHl 698 (1080)
T KOG1408|consen 670 FVSGECVAQMTGHSEAVTGVKFLNDCKHL 698 (1080)
T ss_pred eccchhhhhhcCcchheeeeeecccchhh
Confidence 99999999999988 89999999876544
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.17 E-value=8.1e-11 Score=71.40 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=66.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.+|...+.. ++|+||++++++++ |+.+++||+..|.....+..|...+..++|.|-.. ++++-+.|+..+
T Consensus 119 lr~h~~diyd-L~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q-------yv~s~s~dr~~~ 190 (434)
T KOG1009|consen 119 LRGHRDDIYD-LAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ-------YVASKSSDRHPE 190 (434)
T ss_pred ecccccchhh-hhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh-------hhhhhccCcccc
Confidence 4578899998 99999999999999 99999999999998899999999999999999874 677878877666
Q ss_pred EEeCC
Q 033738 81 YWDFS 85 (112)
Q Consensus 81 ~~~~~ 85 (112)
.+.+.
T Consensus 191 ~~~~~ 195 (434)
T KOG1009|consen 191 GFSAK 195 (434)
T ss_pred eeeee
Confidence 55543
No 174
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.17 E-value=6e-11 Score=75.49 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=66.9
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee--ccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS--LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
..|.+.|.+ +.|-|....|++++ |.+++.||++..+.... +.+|++.|..++|.|... ..+++|+.|+.+
T Consensus 97 ~aH~nAifD-l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~------~vF~tGgRDg~i 169 (720)
T KOG0321|consen 97 LAHKNAIFD-LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP------AVFCTGGRDGEI 169 (720)
T ss_pred ccccceeEe-eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCC------cceeeccCCCcE
Confidence 468999998 99999667788887 99999999998876655 789999999999999886 578899999999
Q ss_pred EEEeCCC
Q 033738 80 KYWDFST 86 (112)
Q Consensus 80 ~~~~~~~ 86 (112)
.+||++.
T Consensus 170 llWD~R~ 176 (720)
T KOG0321|consen 170 LLWDCRC 176 (720)
T ss_pred EEEEEec
Confidence 9999863
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.8e-10 Score=69.62 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCc-eEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAP-VTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
+.|.. ++|+.|++.|+..+ +|.|.+||++...+++.+...++- -+.++.++++. |+++|+..|.+.+||.
T Consensus 345 G~v~~-~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-------ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 345 GVVSD-FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-------YLATGSDSGIVNIYDG 416 (514)
T ss_pred cEEee-EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-------eEEeccCcceEEEecc
Confidence 45666 89999998777666 899999999988888877643221 24677778884 8999999999999996
Q ss_pred CC------CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 85 ST------PELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 85 ~~------~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+ .+++..+..-. .|.++.|+|+++.+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 53 23444443322 89999999998765
No 176
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.3e-09 Score=68.54 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=65.5
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
.+.+.+.. ++|+|||+.|+..+ + ..|.+||+.+++.. .+....+.....+|+|++. + ++++.+.++..
T Consensus 193 ~~~~~v~~-p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~---~---la~~~~~~g~~ 264 (427)
T PRK02889 193 SSPEPIIS-PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR---T---LAVALSRDGNS 264 (427)
T ss_pred cCCCCccc-ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC---E---EEEEEccCCCc
Confidence 45566776 99999999998775 2 46999999887643 3333334556889999995 2 22355666665
Q ss_pred EEE--eCCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 80 KYW--DFSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~--~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
.+| |...+. ...+..+. ......|+|||+.++
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEE
Confidence 555 555444 33343333 456788999998753
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=9.6e-10 Score=71.91 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--C--ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--G--LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|+-.+.+ .++||.++.++++. ||.|.+|.-.. . .....+..|..+|.+++|+++|. ++++||..+.+
T Consensus 204 Htf~~t~-~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-------~LlSGG~E~VL 275 (792)
T KOG1963|consen 204 HTFNITC-VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-------YLLSGGREGVL 275 (792)
T ss_pred hccccee-EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-------eEeecccceEE
Confidence 4445666 89999999999998 89999997432 1 23456677888999999999994 88899999999
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcE
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
-+|.+.+++....-+..+++..+.++||+..
T Consensus 276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred EEEeecCCCcccccccCCeeEEEEEcCCCCe
Confidence 9999999884444445669999999999875
No 178
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.5e-09 Score=68.25 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+...+.. ..|+|||+.|+..+ + ..|.+|++.+++. ..+....+.....+|+|+++ +++ +......+..|+
T Consensus 197 ~~~~~~~-p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~---~la-~~~~~~g~~~Iy 270 (430)
T PRK00178 197 SREPILS-PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGS---KLA-FVLSKDGNPEIY 270 (430)
T ss_pred CCCceee-eeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCC---EEE-EEEccCCCceEE
Confidence 4455665 89999999988765 2 4789999987753 33333334455789999994 332 222223334688
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++|+.++................|+|+|+.+
T Consensus 271 ~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 271 VMDLASRQLSRVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred EEECCCCCeEEcccCCCCcCCeEECCCCCEE
Confidence 8899887654433333355667899999865
No 179
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.14 E-value=3.1e-10 Score=73.69 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=77.9
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCc
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DET 78 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~ 78 (112)
.|...+.+ ++|+++|+++++|- ...+++|++.....+..+..|.-.++|++|+|.+. |+++.+. |-.
T Consensus 76 ssRk~~t~-vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~k-------yvvSVGsQHDMI 147 (1080)
T KOG1408|consen 76 SSRKPLTC-VAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNK-------YVVSVGSQHDMI 147 (1080)
T ss_pred ccCcceeE-EEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCc-------EEEeeccccceE
Confidence 35567777 99999999999996 47899999998777888989999999999999995 7777765 456
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+.+||-+.......-+..+.|..++|+.+|.|+
T Consensus 148 Vnv~dWr~N~~~asnkiss~Vsav~fsEdgSYf 180 (1080)
T KOG1408|consen 148 VNVNDWRVNSSGASNKISSVVSAVAFSEDGSYF 180 (1080)
T ss_pred EEhhhhhhcccccccccceeEEEEEEccCCcee
Confidence 778876544333333334578889999998765
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=62.17 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=65.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc----------CCceEEEEEecCCCCccceeEEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH----------TAPVTTVIVVPASTPATKILSYC 70 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~ 70 (112)
+.||++++.+ +.--.....+.+|+ ||++++||.++++.+..+... ...+.+++.+.+ ++
T Consensus 152 ~rGHtDYvH~-vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---------Wl 221 (325)
T KOG0649|consen 152 YRGHTDYVHS-VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---------WL 221 (325)
T ss_pred EcCCcceeee-eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---------eE
Confidence 6899999997 76633334566777 999999999998776655432 223444444322 44
Q ss_pred EeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcC
Q 033738 71 WTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGK 106 (112)
Q Consensus 71 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~ 106 (112)
+ |+....+.+|.++..++..+++.+.++..+.|..
T Consensus 222 v-CGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~ 256 (325)
T KOG0649|consen 222 V-CGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVD 256 (325)
T ss_pred E-ecCCCceeEEeccCCCceEEEecccceeEeeeec
Confidence 3 4455689999999999998888877777666653
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.13 E-value=9e-10 Score=66.32 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=64.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEcC--CeEEEEeCCCCceeeeccccCC--ceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHTA--PVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
+..|.+.+-+ ++|+++|..|+++++ ..||++.+..|+.+..|+.... .+..++|+|++. ++.+.+..+
T Consensus 169 I~aH~~~lAa-lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-------~L~~sS~Te 240 (391)
T KOG2110|consen 169 INAHKGPLAA-LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-------FLAASSNTE 240 (391)
T ss_pred EEecCCceeE-EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-------eEEEecCCC
Confidence 5679999998 999999999999993 5679999999998888875443 356999999995 777888889
Q ss_pred cEEEEeCCC
Q 033738 78 TIKYWDFST 86 (112)
Q Consensus 78 ~i~~~~~~~ 86 (112)
+|+++.+++
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999997754
No 182
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.13 E-value=2.1e-10 Score=72.02 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=69.8
Q ss_pred CCcCCCeEEcCCCCEEE-EEc-CCeEEEEeCCC--------------C--------------ceeeeccccCCceEEEEE
Q 033738 7 SYVSSPPAFSNDVKRLL-VCT-SNTVSIFSTST--------------G--------------LQISSLEGHTAPVTTVIV 56 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~-~~~-~~~v~~~~~~~--------------~--------------~~~~~~~~~~~~v~~~~~ 56 (112)
..+.+ ++|-|.+..+. .+- +|.+.++|..- + .++..+....+.+...+|
T Consensus 220 tsvT~-ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 220 SSVTC-IKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred cceEE-EEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 56777 99998664433 333 89999986531 0 011122223457788899
Q ss_pred ecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC-CCEEEEEEcCCCcEeC
Q 033738 57 VPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK-FPIFSMVRGKKGFAVF 112 (112)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~ 112 (112)
+||+. ++++.+.||.+|++|+.+.+.+..++.- ....+++|+|||++|.
T Consensus 299 S~DG~-------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 299 SPDGK-------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred cCCCc-------eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 99995 8889999999999999987666555432 2789999999999874
No 183
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.12 E-value=8.4e-10 Score=69.03 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=77.6
Q ss_pred eEEcCCCCEE-EEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 13 PAFSNDVKRL-LVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 13 ~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
++++|..+.+ .+++ +|.|.+||++...++..+ ..|..+...++|+|... .++++.+.|..|.+||......
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne------~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE------ALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc------ceEEEecccceEEEeecccccc
Confidence 7888876554 4566 699999999876655544 46888889999999876 4778999999999999998888
Q ss_pred EEEEecCCCEEEEEEcCCCcEe
Q 033738 90 LKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
...+....+...++|.++|.++
T Consensus 244 ~~~l~y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 244 TDRLTYSHPLSTVAFSECGTYL 265 (673)
T ss_pred cceeeecCCcceeeecCCceEE
Confidence 8888888899999999999876
No 184
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=2.9e-10 Score=70.32 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=75.4
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
+.+.. ++-+|-...+-.|. +|+|.+|.....+++..+..|.++|.++++.++|. |.+|.+.|+.+++||++
T Consensus 252 G~~~v-m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-------YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 252 GRTDV-MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-------YMATTGLDRKVKIWDLR 323 (545)
T ss_pred Cccch-hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-------EEeecccccceeEeeec
Confidence 34444 66677667777776 89999999998888888889999999999999996 89999999999999999
Q ss_pred CCceEEEEecCCCEEEEEEcCCC
Q 033738 86 TPELLKTIDVKFPIFSMVRGKKG 108 (112)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~ 108 (112)
.-..+.+...+.+...++++..|
T Consensus 324 ~~~ql~t~~tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 324 NFYQLHTYRTPHPASNLSLSQKG 346 (545)
T ss_pred cccccceeecCCCcccccccccc
Confidence 76666666555466666666544
No 185
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.11 E-value=7e-10 Score=68.37 Aligned_cols=103 Identities=22% Similarity=0.278 Sum_probs=71.0
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc----------------------------------------
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL---------------------------------------- 39 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~---------------------------------------- 39 (112)
+..|...|.+ +.|+|.. ..+++.+ ||+++.-|++...
T Consensus 230 f~~hs~~Vs~-l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 230 FTPHSGPVSG-LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred eccCCccccc-eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 4567778887 8888854 5566666 8888877775221
Q ss_pred -----eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC--Cce---EEEEecCCCEEEEEEcCCCc
Q 033738 40 -----QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST--PEL---LKTIDVKFPIFSMVRGKKGF 109 (112)
Q Consensus 40 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~---~~~~~~~~~v~~~~~~~~~~ 109 (112)
....+..|...|..++++|-.+ -++++++.|++.++||++. ++. +.++.....|.+..|+|+|-
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCP------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCc------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 1223334666888999999875 2577999999999999875 222 33333333999999999875
Q ss_pred Ee
Q 033738 110 AV 111 (112)
Q Consensus 110 ~~ 111 (112)
.|
T Consensus 383 tl 384 (498)
T KOG4328|consen 383 TL 384 (498)
T ss_pred ce
Confidence 43
No 186
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=3.1e-09 Score=65.35 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=79.2
Q ss_pred ccCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCCce-eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
++.|...|.+ +.|+|. .+.|++|+ |+++.+.|.+.... ...++ -.+.|-.++|.|... ..++++..||.
T Consensus 282 ~~~~~k~Vq~-l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se------~~f~~~tddG~ 353 (463)
T KOG0270|consen 282 ITHHGKKVQT-LEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE------NSFFVSTDDGT 353 (463)
T ss_pred hhhcCCceeE-EEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc------eeEEEecCCce
Confidence 4557888997 999986 58889999 99999999985322 22333 356788999999875 36668899999
Q ss_pred EEEEeCCC-CceEEEEecCC-CEEEEEEcCCCc
Q 033738 79 IKYWDFST-PELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 79 i~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
++-+|++. ++++.+++.|. +|.++++++...
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 99999987 58999998887 999999886543
No 187
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.9e-10 Score=75.03 Aligned_cols=94 Identities=19% Similarity=0.273 Sum_probs=76.6
Q ss_pred cCCCeEEcCCC-CEEEEEc--C--CeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 9 VSSPPAFSNDV-KRLLVCT--S--NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 9 v~~~~~~~~~~-~~l~~~~--~--~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
+.. +.|+|+. ..+++++ | -.|.+||++.. ...+.+.+|...+.++.|++.+. .++++++.|+++.+|
T Consensus 209 ~S~-l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~------~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 209 CSV-LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP------RLLLSSGKDNRIICW 281 (1049)
T ss_pred eee-eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc------hhhhcccCCCCeeEe
Confidence 455 8999997 4555555 3 68999998764 34567789999999999999874 256699999999999
Q ss_pred eCCCCceEEEEecCC-CEEEEEEcCCCc
Q 033738 83 DFSTPELLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
+.++|+.+..+.... ++..+.|+|...
T Consensus 282 N~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 282 NPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred cCCCceEeeecCCCCcceeeeeecCCCc
Confidence 999999999887755 999999998764
No 188
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3.4e-09 Score=67.08 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cE
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TI 79 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i 79 (112)
...+.. ..|+|||+.|+..+ + ..|+++|+.+++. ..+....+.....+|+|+++ .++ ++...++ .|
T Consensus 217 ~~~~~~-p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~---~La---~~~~~~g~~~I 288 (448)
T PRK04792 217 PEPLMS-PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGK---KLA---LVLSKDGQPEI 288 (448)
T ss_pred CCcccC-ceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCCCcCCeeECCCCC---EEE---EEEeCCCCeEE
Confidence 345566 89999999998765 2 4688999887753 22322223334679999995 222 2344445 48
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++|+.+++...............|+|||+.+
T Consensus 289 y~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 289 YVVDIATKALTRITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 88898877654333333356778999999876
No 189
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=5.2e-09 Score=65.99 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCCCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCc
Q 033738 5 GRSYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DET 78 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~ 78 (112)
+.+.+.. .+|+|||+.|+.. + + ..|+++|+.++. ...+..+........|+|+++ .++ .+... ...
T Consensus 244 ~~g~~~~-~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~---~i~---f~s~~~g~~~ 315 (435)
T PRK05137 244 FPGMTFA-PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGS---QIV---FESDRSGSPQ 315 (435)
T ss_pred CCCcccC-cEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCC---EEE---EEECCCCCCe
Confidence 4455565 8999999887644 4 4 458888988775 455655555566789999995 222 12222 346
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++++|...+...........+..+.|+|+|+.|
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 888898766554433333456678899999876
No 190
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.10 E-value=9e-10 Score=46.50 Aligned_cols=38 Identities=24% Similarity=0.552 Sum_probs=34.4
Q ss_pred ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 39 LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
+++..+.+|.+.|.+++|+|++. ++++++.|+.+++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------cceeeCCCCEEEEEC
Confidence 46778899999999999999985 788999999999997
No 191
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=4.9e-09 Score=62.23 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=69.6
Q ss_pred CEEEEEc--CCeEEEEeCCCCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc-EEEEeCCCCceEEEEe
Q 033738 20 KRLLVCT--SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET-IKYWDFSTPELLKTID 94 (112)
Q Consensus 20 ~~l~~~~--~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~ 94 (112)
..|+.-+ -|.|.+.|+..-+. ...+..|...+.|++.+.+|. .++|++..|+ ||+||..+|..+..++
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-------~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-------LVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-------EEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 4455445 39999999876443 467788999999999999994 7789998886 8899999999998887
Q ss_pred cC---CCEEEEEEcCCCcEe
Q 033738 95 VK---FPIFSMVRGKKGFAV 111 (112)
Q Consensus 95 ~~---~~v~~~~~~~~~~~~ 111 (112)
-+ ..+++++|+|++.++
T Consensus 222 RG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred cCCchheEEEEEeCCCccEE
Confidence 54 389999999999876
No 192
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.09 E-value=4.1e-09 Score=66.05 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=77.9
Q ss_pred cCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 3 RGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.|..+-.. ++|+|.. .+|++.+ |..|.+||....+....+. ...+...++|+++|. +++.|...|.+.
T Consensus 205 ~~HsAP~~g-icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-------~L~aG~s~G~~i 275 (673)
T KOG4378|consen 205 EAHSAPCRG-ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGT-------YLCAGNSKGELI 275 (673)
T ss_pred hhccCCcCc-ceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCce-------EEEeecCCceEE
Confidence 567788887 9999976 5566778 9999999998665544443 567889999999994 888999999999
Q ss_pred EEeCCC-CceEEEEecCC-CEEEEEEcCCC
Q 033738 81 YWDFST-PELLKTIDVKF-PIFSMVRGKKG 108 (112)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~ 108 (112)
.||++. ..++.++..|. .|++++|-|..
T Consensus 276 ~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 276 AYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEecccCCCCceEeeecccceeEEEeeecc
Confidence 999985 45677777776 89999997753
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.08 E-value=4.5e-10 Score=65.22 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=73.7
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--Ccee--eeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQI--SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
.|...|.. +.+.+.-..=+.++ +..+.+|.++. +... ....-..-.+..+.+-||++ +++++++|++
T Consensus 203 sh~qpvls-ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-------IlATAGWD~R 274 (323)
T KOG0322|consen 203 SHKQPVLS-LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-------ILATAGWDHR 274 (323)
T ss_pred hccCccee-eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-------EEeecccCCc
Confidence 46677776 77776444445555 67788887753 2211 12222344578889999996 8889999999
Q ss_pred EEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738 79 IKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 110 (112)
+|+|..++.+++..++.|. .|++++|+|+.+.
T Consensus 275 iRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 275 IRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred EEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 9999999999999999998 9999999998554
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.07 E-value=4.5e-09 Score=62.77 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=73.8
Q ss_pred CeEEcCCCCEEEEEcCCeEEEEeC-CCCceee---ec----cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 12 PPAFSNDVKRLLVCTSNTVSIFST-STGLQIS---SL----EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~v~~~~~-~~~~~~~---~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
++.|+|||..|++|-...|+++|+ +.|..-. .+ .+..+-+.+++++|... ..++.++-...+-++.
T Consensus 163 sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~------~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS------KTLAVGSYGQRVGIYN 236 (406)
T ss_pred eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC------cceeeecccceeeeEe
Confidence 389999999999998999999998 4453211 11 12345678999999874 2455777778888888
Q ss_pred CCCCceEEEEecCC-CEEEEEEcCCCcEeC
Q 033738 84 FSTPELLKTIDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 112 (112)
-..+.++..+..+. .|+.+.|+++|+.+|
T Consensus 237 ~~~~~pl~llggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred cCCCCceeeecccCCCeeeEEeccCcCeec
Confidence 77888888888777 999999999999876
No 195
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.3e-08 Score=64.17 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEE
Q 033738 7 SYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIK 80 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~ 80 (112)
+.+.. +.|+|||+.|+.. + + ..|++||+++++ ...+..+...+....|+|+++ .+ +.+...++ .++
T Consensus 243 ~~~~~-~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~---~I---~f~s~~~g~~~Iy 314 (429)
T PRK03629 243 RHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQ---NL---AYTSDQAGRPQVY 314 (429)
T ss_pred CCcCC-eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECCCCC---EE---EEEeCCCCCceEE
Confidence 33455 8999999988865 3 3 469999998775 444544445567889999995 22 22333333 455
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.+|+.++................|+|+|+.+
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 5677766543332222355678899999876
No 196
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.06 E-value=4.2e-09 Score=65.89 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=65.3
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCc
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DET 78 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~ 78 (112)
+...+.. ++|+|||+.++... + ..|++||+.+++.. .+....+.....+|+|++. .+ +++... +..
T Consensus 188 ~~~~~~~-p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~---~l---~~~~~~~~~~~ 259 (417)
T TIGR02800 188 SREPILS-PAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS---KL---AVSLSKDGNPD 259 (417)
T ss_pred CCCceec-ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC---EE---EEEECCCCCcc
Confidence 3445665 89999999998775 2 57999999887533 3333445556789999984 22 223333 456
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+++||+.++................|+|+|+.|
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l 292 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSI 292 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCCCEE
Confidence 999999877554333322344567899998865
No 197
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.06 E-value=1.1e-08 Score=64.21 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=45.3
Q ss_pred CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC-CceEEE---EecCCCEEEEEEcCCCcEe
Q 033738 48 TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST-PELLKT---IDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~---~~~~~~v~~~~~~~~~~~~ 111 (112)
..++++++++|++. +++.++.|+.|++|.+.. |..... +.. ++++.+.|++|++++
T Consensus 447 ~~~ls~v~ysp~G~-------~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGA-------FLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFL 506 (626)
T ss_pred CCceEEEEEcCCCC-------EEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceE
Confidence 67889999999995 899999999999998865 333332 233 599999999999886
No 198
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.06 E-value=4.5e-09 Score=65.89 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=77.5
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
++|.+.... ++.+|+.+.+++++ |+.+++|+ ..+..-... -..+..+++|+|.+ .++.+...|...+
T Consensus 365 ~gh~delwg-la~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--------~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 365 QGHGDELWG-LATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--------VVAVGTATGRWFV 432 (626)
T ss_pred Eecccceee-EEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--------eEEEeeccceEEE
Confidence 578888887 99999999999998 99999999 232222221 34567899999998 6678999999999
Q ss_pred EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.|.++...+.......++.+++|+|+|.++
T Consensus 433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred EecccceeEEEEecCCceEEEEEcCCCCEE
Confidence 999987766666565699999999999876
No 199
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.8e-09 Score=68.82 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=56.8
Q ss_pred eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcE
Q 033738 42 SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
..+.+|.+.|.++...|.+. ++++|+.||++++|.+.+|.|+.++.....|.+++|+|.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~-------wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE-------WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL 455 (733)
T ss_pred eeEeccCCeEEEEEecCCcc-------eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc
Confidence 45678999999999999985 889999999999999999999999999999999999998753
No 200
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=7.6e-09 Score=65.17 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=62.8
Q ss_pred cCCCeEEcCCCCEEEEEc--CCe--EEEEeCCC-CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 9 VSSPPAFSNDVKRLLVCT--SNT--VSIFSTST-GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~--~~~--v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
... .+|+|||+.|+..+ ++. +.++++.. +.....+......+....|+|+++ +++ +.........|.+||
T Consensus 283 ~~~-p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~---~La-f~~~~~g~~~I~v~d 357 (428)
T PRK01029 283 QGN-PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK---KIA-FCSVIKGVRQICVYD 357 (428)
T ss_pred cCC-eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC---EEE-EEEcCCCCcEEEEEE
Confidence 344 89999999888765 454 55555542 223444544445567889999995 232 221112235799999
Q ss_pred CCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 84 FSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+.+++..........+..+.|+|||+.|+
T Consensus 358 l~~g~~~~Lt~~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 358 LATGRDYQLTTSPENKESPSWAIDSLHLV 386 (428)
T ss_pred CCCCCeEEccCCCCCccceEECCCCCEEE
Confidence 98887654443333677889999998763
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.03 E-value=2.5e-09 Score=63.56 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=77.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
++.|...|.+ ++|+|..+.|++++ |..-++|....+ ++.-.+..+....+++.|+|.++ .++.++..+
T Consensus 51 ls~Hd~~vtg-vdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-------kFAVgSgar 122 (361)
T KOG1523|consen 51 LSEHDKIVTG-VDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-------KFAVGSGAR 122 (361)
T ss_pred hhhhCcceeE-EeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc-------eEEeccCcc
Confidence 5678889998 99999999999999 888899988433 33445556778889999999995 677999999
Q ss_pred cEEEEeCCCCceE---EEE--ecCCCEEEEEEcCCCcEe
Q 033738 78 TIKYWDFSTPELL---KTI--DVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 78 ~i~~~~~~~~~~~---~~~--~~~~~v~~~~~~~~~~~~ 111 (112)
.+.+|=++..+.- +.+ +..+.|.++.|+|++-.+
T Consensus 123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred EEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 9999877643322 111 223478999999987543
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=3.9e-09 Score=63.17 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=69.5
Q ss_pred ccCCCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCCCc---------------------------------------
Q 033738 2 IRGGRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTSTGL--------------------------------------- 39 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~~~--------------------------------------- 39 (112)
++++...+.. ++|..+ .+.+.+++ ||+|++||++...
T Consensus 66 fk~~~~~~N~-vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~ 144 (376)
T KOG1188|consen 66 FKGPPATTNG-VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS 144 (376)
T ss_pred ecCCCCcccc-eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence 4667777776 777653 46666776 8888888876321
Q ss_pred ----------e-eeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc----eEEEEecCCCEEEEE
Q 033738 40 ----------Q-ISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE----LLKTIDVKFPIFSMV 103 (112)
Q Consensus 40 ----------~-~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~v~~~~ 103 (112)
. ++.+ ..|...|++++|+|..+ .++++|+.||.+.++|+..-. .+.++...+.|..+.
T Consensus 145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p------nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP------NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred EEEEEeccccchhhhhhhhccCcceeEEecCCCC------CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 1 1111 34778899999999887 466799999999999987432 234455555788888
Q ss_pred EcCCC
Q 033738 104 RGKKG 108 (112)
Q Consensus 104 ~~~~~ 108 (112)
|..++
T Consensus 219 w~~~~ 223 (376)
T KOG1188|consen 219 WLSKK 223 (376)
T ss_pred eecCC
Confidence 87766
No 203
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.8e-09 Score=62.57 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=68.1
Q ss_pred ccCCCCCcCCCeEEcCC-C---CEEEEEc-CCeEEEEeCCCC--------------------ceeeeccccCCceEEEEE
Q 033738 2 IRGGRSYVSSPPAFSND-V---KRLLVCT-SNTVSIFSTSTG--------------------LQISSLEGHTAPVTTVIV 56 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~-~---~~l~~~~-~~~v~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~ 56 (112)
|.+|+..|.+ ++|.|+ | +.|++++ || |++|.+... +.+..+..|.++|..+.|
T Consensus 219 L~d~~dpI~d-i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 219 LPDHTDPIRD-ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCCCCccee-eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 5689999998 999997 3 5778888 88 999987621 124556789999999999
Q ss_pred ecCCCCccceeEEEEeeecCCcEEEEeCC---CCceEEEEecCCCEE
Q 033738 57 VPASTPATKILSYCWTASLDETIKYWDFS---TPELLKTIDVKFPIF 100 (112)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~---~~~~~~~~~~~~~v~ 100 (112)
+-.| .++++.+.||.+|+|... .-+|...+.....+.
T Consensus 297 NmtG-------tiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~ 336 (361)
T KOG2445|consen 297 NMTG-------TILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVT 336 (361)
T ss_pred eeee-------eEEeecCCCceeeehhhhhhhhheeeeEEeccCCCC
Confidence 9998 478899999999999643 234666665544333
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=4.7e-09 Score=69.97 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=76.6
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.||.+.++. +.++.||+++++.+ |.++++|++++.+... ...+|..+++.+.+.|. .+++++.|-+.
T Consensus 171 l~GHeG~iF~-i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---------~i~t~gedctc 240 (967)
T KOG0974|consen 171 LKGHEGSIFS-IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---------RIITVGEDCTC 240 (967)
T ss_pred ecccCCceEE-EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---------eeEEeccceEE
Confidence 6899999998 99999999999999 8999999999887665 66689999999999876 35599999999
Q ss_pred EEEeCCCCceEEEEecCC--CEEEEEEcCCC
Q 033738 80 KYWDFSTPELLKTIDVKF--PIFSMVRGKKG 108 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 108 (112)
++|+.. +..+.++..|. .++.++..++.
T Consensus 241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV 270 (967)
T ss_pred EEEecc-cceehhhhhhhhcceeEEEEcCCc
Confidence 999654 44444555554 56666655443
No 205
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.4e-08 Score=64.22 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=80.6
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
.|.+.|.+ +.++.+-..|.+++ |..+..|+....+.++.+......+..++.+||+. ++++++ ++|++|
T Consensus 100 ~h~~~v~~-~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-------~l~~as--~~ik~~ 169 (541)
T KOG4547|consen 100 KHYGNVNE-ILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-------ILLTAS--RQIKVL 169 (541)
T ss_pred CCCCccee-eecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-------EEEecc--ceEEEE
Confidence 48888887 77787778888888 89999999998888888888888889999999985 444554 689999
Q ss_pred eCCCCceEEEEecCC-CEEEEEEcCC
Q 033738 83 DFSTPELLKTIDVKF-PIFSMVRGKK 107 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~-~v~~~~~~~~ 107 (112)
|+++++.+.++.+|. +|+++.|.-+
T Consensus 170 ~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 170 DIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EccCceEEEEecCCCcceEEEEEEEe
Confidence 999999999999988 9999988765
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=3.3e-09 Score=66.86 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=66.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC----------ceeeeccccCCceEEEEEecCCCCccceeEEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----------LQISSLEGHTAPVTTVIVVPASTPATKILSYC 70 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 70 (112)
|.+|.+.|.| +++.++++.+++|+ ||.|+.|++... .....+.+|...++.+++|+... .+
T Consensus 340 fraH~gPVl~-v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-------~L 411 (577)
T KOG0642|consen 340 FRAHEGPVLC-VVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-------RL 411 (577)
T ss_pred EecccCceEE-EEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-------ce
Confidence 5789999998 99999999999999 999999965421 12356678999999999998874 46
Q ss_pred EeeecCCcEEEEeCCCCce
Q 033738 71 WTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 71 ~~~~~d~~i~~~~~~~~~~ 89 (112)
++++.||++++|+......
T Consensus 412 lscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeecCCceEEeeccCCcCc
Confidence 6999999999999876544
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=5.7e-09 Score=63.94 Aligned_cols=101 Identities=10% Similarity=0.121 Sum_probs=78.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC------Cceeeec-cccCCceEEEEEecCCCCccceeEEEEee
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST------GLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
+.+|.+.|.+ +.|+.++++|++|+ |..+++|.+.. .+++... ..|...+.+++|.-... .+.+|
T Consensus 52 ~~~H~GCiNA-lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-------~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINA-LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-------FLYSG 123 (609)
T ss_pred hhhhccccce-eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-------eEecC
Confidence 3579999998 99999999999999 79999999753 2333322 23567899999987663 66699
Q ss_pred ecCCcEEEEeCCCCceEEEEecCC---CEEEEEEcCCCcE
Q 033738 74 SLDETIKYWDFSTPELLKTIDVKF---PIFSMVRGKKGFA 110 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 110 (112)
+.++++.+-|+++.+.+..+.... .|+.+..+|..+.
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~ 163 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNT 163 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCCce
Confidence 999999999999998888776544 7777777776543
No 208
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=7.3e-09 Score=61.07 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred cCCCCCcCCCeEEcCC-CCEEEEEc-CCeEEEEeCCCC-cee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 3 RGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTG-LQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~-~~~l~~~~-~~~v~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
++|.-.... +.|+.. .+.+++|+ |+.+..||++.. +.+ ...+.|...|.++.-+|..+ .++++|+.|..
T Consensus 162 k~He~E~Wt-a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~------~~I~TGsYDe~ 234 (339)
T KOG0280|consen 162 KVHEFEAWT-AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP------TYIATGSYDEC 234 (339)
T ss_pred cccceeeee-eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC------ceEEEeccccc
Confidence 456555555 667654 47788888 899999999843 333 33556888899998887654 37889999999
Q ss_pred EEEEeCCC-CceEEEEecCCCEEEEEEcCCC
Q 033738 79 IKYWDFST-PELLKTIDVKFPIFSMVRGKKG 108 (112)
Q Consensus 79 i~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 108 (112)
|++||.++ ++++........|+.+.++|.-
T Consensus 235 i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred eeeeehhcccCccccCccccceEEEEecchh
Confidence 99999985 6777666666688888888753
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.00 E-value=1.8e-08 Score=62.33 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=64.4
Q ss_pred CEEEEE-c-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 20 KRLLVC-T-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 20 ~~l~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
++++.. . ++.|.+.|..+.+.+..+.........+.++|+++ +++.++.|+.+.++|+.+++.+.+++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr-------~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR-------YLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS-------EEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC-------EEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 445443 4 79999999999888888876544445677899996 55567889999999999999999999888
Q ss_pred CEEEEEEcCCCcEeC
Q 033738 98 PIFSMVRGKKGFAVF 112 (112)
Q Consensus 98 ~v~~~~~~~~~~~~~ 112 (112)
....+++++||++++
T Consensus 79 ~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEEEE--TTTEEE
T ss_pred CcceEEEcCCCCEEE
Confidence 889999999999875
No 210
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.00 E-value=3.1e-08 Score=60.54 Aligned_cols=102 Identities=31% Similarity=0.423 Sum_probs=79.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|...+.. ++++|++..++.++ ++.+++|+...+.....+..|...+.+++|+|++. .++++++.|+.+
T Consensus 151 ~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~d~~i 223 (466)
T COG2319 151 LEGHSESVTS-LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG------LLIASGSSDGTI 223 (466)
T ss_pred EecCcccEEE-EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc------eEEEEecCCCcE
Confidence 4568888887 99999998777775 89999999988777777888899999999998873 144456899999
Q ss_pred EEEeCCCCceEE-EEecCCCEEEEEEcCCCcE
Q 033738 80 KYWDFSTPELLK-TIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 110 (112)
++||...+.... .+..+.......|+|++..
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255 (466)
T ss_pred EEEECCCCcEEeeecCCCCcceeEeECCCCCE
Confidence 999988777777 4665553222268888743
No 211
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2.1e-08 Score=62.17 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=75.3
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
..+++++++++..+ .|.|.+....+++.+..++. .+.+..+.|+.++. .++.++.+|.|++||++...++.
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk-------~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSK-------ELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCc-------EEEEEcCCceEEEEecCCcceEE
Confidence 77899999999988 89999999988888877774 57789999998884 45578888999999999999998
Q ss_pred EEecCC--CEEEEEEcCCCcEe
Q 033738 92 TIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 92 ~~~~~~--~v~~~~~~~~~~~~ 111 (112)
.+.... .-++++.+++|.++
T Consensus 381 rf~D~G~v~gts~~~S~ng~yl 402 (514)
T KOG2055|consen 381 RFVDDGSVHGTSLCISLNGSYL 402 (514)
T ss_pred EEeecCccceeeeeecCCCceE
Confidence 887665 44566767888765
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=3.4e-08 Score=62.39 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe-eecCC--cE
Q 033738 7 SYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT-ASLDE--TI 79 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~d~--~i 79 (112)
+.... ++|+|||+.++.. + + ..|++||+.+++ ...+..+.......+|+|++. .++. ...++ .+
T Consensus 248 g~~~~-~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~-------~l~f~sd~~g~~~i 318 (433)
T PRK04922 248 GINGA-PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGK-------SIYFTSDRGGRPQI 318 (433)
T ss_pred CCccC-ceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCC-------EEEEEECCCCCceE
Confidence 33444 8999999887644 3 3 479999998775 445555544456789999995 3333 33344 47
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+++|+.+++.............++|+|+|+.++
T Consensus 319 y~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 319 YRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 777877765433332223455689999998763
No 213
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=9.6e-10 Score=46.42 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=30.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEe
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFS 34 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~ 34 (112)
+++|.+.|.+ ++|+|+++.+++++ |+.|++||
T Consensus 7 ~~~h~~~i~~-i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINS-IAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEE-EEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEE-EEEecccccceeeCCCCEEEEEC
Confidence 6789999998 99999999999999 99999997
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.98 E-value=1.9e-08 Score=59.98 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC---ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
.+.+++ .+|++|++.++.+. ...|.+|..... +..+.+..|...|+.++|+|..+ -+++++.|+.-++
T Consensus 10 ~~pitc-hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-------rIvtcs~drnayV 81 (361)
T KOG1523|consen 10 LEPITC-HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-------RIVTCSHDRNAYV 81 (361)
T ss_pred cCceee-eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-------ceeEccCCCCccc
Confidence 457887 99999999999887 678998886543 45688889999999999999984 5569999999999
Q ss_pred EeCCC-Cce--E-EEEecCCCEEEEEEcCCCcEe
Q 033738 82 WDFST-PEL--L-KTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~-~~~--~-~~~~~~~~v~~~~~~~~~~~~ 111 (112)
|...+ ++- . ..++....+.++.|+|.++.+
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKF 115 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceE
Confidence 99843 332 2 223344589999999988764
No 215
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=4.7e-09 Score=66.21 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC--------CceeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--------GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS 74 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 74 (112)
.|.+.+.. +.+.|-...|++++ |+.+++|+++. -+++..|.+|.++|.|+++.+++. .+++++
T Consensus 292 s~~d~ir~-l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-------~~ysgg 363 (577)
T KOG0642|consen 292 SHDDCIRA-LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-------HCYSGG 363 (577)
T ss_pred cchhhhhh-hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-------EEEeec
Confidence 36666776 88888888999999 99999999942 145678889999999999999985 777999
Q ss_pred cCCcEEEEeCCC------Cc----eEEEEecCC-CEEEEEEcCCCc
Q 033738 75 LDETIKYWDFST------PE----LLKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 75 ~d~~i~~~~~~~------~~----~~~~~~~~~-~v~~~~~~~~~~ 109 (112)
.||+|+.|++.. .. ....+.+|. .++.+++++...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~ 409 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD 409 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence 999999996541 11 122334444 677777776544
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.98 E-value=2.1e-08 Score=60.27 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=76.1
Q ss_pred CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
.|.. +.|+.|..+++++- ++.|.+|++...+-...+.....++..+.|||+++ -++.+...+-+|.+|.+.
T Consensus 50 ki~y-ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgr------hiL~tseF~lriTVWSL~ 122 (447)
T KOG4497|consen 50 KIVY-IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGR------HILLTSEFDLRITVWSLN 122 (447)
T ss_pred Hhhh-eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcc------eEeeeecceeEEEEEEec
Confidence 4555 78888887777665 78999999988877788888888899999999995 245588889999999998
Q ss_pred CCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 86 TPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+......-.....+..++|+|+|++.
T Consensus 123 t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 123 TQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred cceeEEecccccCceeEEECCCCcee
Confidence 77664433333377889999999864
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.97 E-value=6.2e-09 Score=67.52 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=69.1
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceee----------ec-------------------------c
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS----------SL-------------------------E 45 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~----------~~-------------------------~ 45 (112)
++||.+.|.+ ++|+.||+.+++|+ |..|.+|..+-...++ .+ .
T Consensus 49 LKgHKDtVyc-VAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 49 LKGHKDTVYC-VAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS 127 (1081)
T ss_pred cccccceEEE-EEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence 7899999998 99999999999998 9999999865211000 00 0
Q ss_pred --ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec---C-CCEEEEEEcCCC
Q 033738 46 --GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV---K-FPIFSMVRGKKG 108 (112)
Q Consensus 46 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~ 108 (112)
....++.+++|..||. |++-|-.+|+|.+-+-. |+..-.+.- + +++++++|+|+.
T Consensus 128 K~kss~R~~~CsWtnDGq-------ylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDGQ-------YLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hhhhheeEEEeeecCCCc-------EEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence 0123566778888884 78888889999987643 433333322 2 399999999864
No 218
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=3.9e-08 Score=61.65 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=77.1
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec----CCc
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL----DET 78 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----d~~ 78 (112)
+..+.|.. +..+|+|+.++.+. ...+.++|+++++....-+...+.++.+.|+|+++ +++-+-- ...
T Consensus 399 ~~lg~I~a-v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-------~iAYafP~gy~tq~ 470 (668)
T COG4946 399 KDLGNIEA-VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-------WIAYAFPEGYYTQS 470 (668)
T ss_pred CCccceEE-EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-------eEEEecCcceeeee
Confidence 34567776 99999999999998 58999999999975444455678899999999984 4444433 357
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
|+++|+..++..........=.+.+|.|+|+++|
T Consensus 471 Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 471 IKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 9999999877766555444556778999999875
No 219
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=7.7e-08 Score=61.05 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=61.6
Q ss_pred cCCCeEEcCCCCEEEEE-c-CC--eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--CcEEEE
Q 033738 9 VSSPPAFSNDVKRLLVC-T-SN--TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--ETIKYW 82 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~-~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~~~ 82 (112)
... .+|+|||+.|+.. + ++ .|+++|+.+++ ...+..+........|+|+++ .++ .+...+ ..++++
T Consensus 264 ~~~-~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~---~I~---f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 264 NGA-PRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGK---SLI---FTSERGGKPQIYRV 335 (448)
T ss_pred cCC-eeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCC---EEE---EEECCCCCceEEEE
Confidence 344 8999999988765 3 44 58888988765 445554545556789999985 222 233333 457777
Q ss_pred eCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 83 DFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
|+.+++...............|+|+|+.++
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEE
Confidence 887776543322222344578999998764
No 220
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.92 E-value=1e-08 Score=63.39 Aligned_cols=99 Identities=19% Similarity=0.131 Sum_probs=70.2
Q ss_pred CCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce----eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 5 GRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 5 h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
|...|.. ++++|-. ..+++++ |++.++||++.-.. +-....|...|.+..|||.+. -+++.+.|..
T Consensus 321 h~kKI~s-v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-------tl~TT~~D~~ 392 (498)
T KOG4328|consen 321 HKKKITS-VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-------TLLTTCQDNE 392 (498)
T ss_pred hhcccce-eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-------ceEeeccCCc
Confidence 5667887 9999965 6788888 99999999975321 233346888999999999985 4669999999
Q ss_pred EEEEeCC----CCceEEEEecC----C--CEEEEEEcCCCcEe
Q 033738 79 IKYWDFS----TPELLKTIDVK----F--PIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~----~~~~~~~~~~~----~--~v~~~~~~~~~~~~ 111 (112)
|++||.. .-.+..++.+. . ...-..|.|+.+++
T Consensus 393 IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 393 IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred eEEeecccccccCCccceeeccCcccccccchhheeCCCccEE
Confidence 9999973 22333344321 1 23345777776655
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=2.5e-08 Score=62.88 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=58.4
Q ss_pred cCCCeEEcCCCCEEEEEc--CCe--EEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 9 VSSPPAFSNDVKRLLVCT--SNT--VSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~--~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
... ++|+|||+.|+.+. ++. |++||+.++. ...+..+...+....|+|++. + ++++...++...+|++
T Consensus 250 ~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~---~---i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 250 NGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQ---S---ILFTSDRSGSPQVYRM 321 (429)
T ss_pred cCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCC---E---EEEEECCCCCceEEEE
Confidence 345 89999999888764 565 4555666554 455665666677899999995 2 2334445677777765
Q ss_pred CC-CceEEEEecCCCEEEEEEcCCCcEe
Q 033738 85 ST-PELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 85 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.. +.....+. +.. .++.|+|+|+.+
T Consensus 322 ~~~~~~~~~l~-~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 322 SASGGGASLVG-GRG-YSAQISADGKTL 347 (429)
T ss_pred ECCCCCeEEec-CCC-CCccCCCCCCEE
Confidence 42 22222222 222 456788988876
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=5.7e-08 Score=61.27 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=60.0
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc--CCeEEEE--eCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC---C
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT--SNTVSIF--STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---E 77 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---~ 77 (112)
+...... +.|+|||+.++..+ ++...+| ++.++. ...+..........+|+|+++ +++..+.+ .
T Consensus 282 ~~~~~~~-~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~-------~Ia~~s~~~g~~ 352 (427)
T PRK02889 282 SSGIDTE-PFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGK-------LLAYISRVGGAF 352 (427)
T ss_pred CCCCCcC-eEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCC-------EEEEEEccCCcE
Confidence 3344455 89999999888665 3544555 444443 233322223334578999995 33333332 3
Q ss_pred cEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 78 TIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
.+++||+.+++... +........+.|+|+|+.|+
T Consensus 353 ~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 353 KLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYIL 386 (427)
T ss_pred EEEEEECCCCCeEE-ccCCCCccCceECCCCCEEE
Confidence 69999998876543 33333456789999998764
No 223
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=8.9e-08 Score=60.27 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=63.9
Q ss_pred cCCCeEEcCCCCE-EEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 9 VSSPPAFSNDVKR-LLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 9 v~~~~~~~~~~~~-l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
... ..|+|||+. ++..+ +..|.++|+.+++. ..+....+......|+|++. +++ +..+...+..|+++|
T Consensus 190 ~~~-p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~---~la-~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 190 NIF-PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGS---KLL-LTMAPKGQPDIYLYD 263 (419)
T ss_pred eEe-EEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECCCCC---EEE-EEEccCCCcEEEEEE
Confidence 344 899999985 55443 25799999988764 33333445556778999994 444 444444567788889
Q ss_pred CCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 84 FSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+..+................|+|||+.|+
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEE
Confidence 88776544333332344568999998663
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.8e-08 Score=61.29 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=74.9
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee-ccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
..+.+ +...|+|+.++++. .+.+..+|++.++.... +.+-.+.+..+..+|..+ ++++++.|+.+|++|+
T Consensus 248 ~~is~-~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-------~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 248 NPISS-TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-------VLASCGLDRYVRIHDI 319 (412)
T ss_pred Cccee-eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-------eEEeeccceeEEEeec
Confidence 45555 88899999999998 79999999999887765 778888999999999986 8889999999999999
Q ss_pred CCCceEEEEecCCCEEEEEEcC
Q 033738 85 STPELLKTIDVKFPIFSMVRGK 106 (112)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~ 106 (112)
.+...+......+..+++.+.+
T Consensus 320 ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred ccchhhhhhhhhccccEEEecC
Confidence 9866665555555556665544
No 225
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.87 E-value=2.5e-07 Score=56.58 Aligned_cols=101 Identities=27% Similarity=0.391 Sum_probs=74.8
Q ss_pred ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+.+|...+.+ ++|+|++. .+++++ |+.+++||...+.... .+..|.... ...|++++. ++++++.|+.
T Consensus 194 ~~~~~~~v~~-~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~d~~ 264 (466)
T COG2319 194 LAGHTDPVSS-LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-------LLASGSSDGT 264 (466)
T ss_pred eccCCCceEE-EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC-------EEEEecCCCc
Confidence 3457788887 99999998 445535 8999999988776666 577776664 337888874 5669999999
Q ss_pred EEEEeCCCCce-EEEEecC-CCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPEL-LKTIDVK-FPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~~~~ 111 (112)
+++|+...... ......+ ..+.++.|+|++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 99999986654 4444334 389999999966544
No 226
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.9e-07 Score=58.94 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=62.2
Q ss_pred CcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec--CCcEEE
Q 033738 8 YVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL--DETIKY 81 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~ 81 (112)
.... +.|+|||+.++.. + + ..|+++|+++++ ...+..+........|+|++. .++ .+... ...+++
T Consensus 244 ~~~~-~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~---~i~---f~s~~~g~~~iy~ 315 (430)
T PRK00178 244 LNGA-PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGR---TLY---FTSDRGGKPQIYK 315 (430)
T ss_pred CcCC-eEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCC---EEE---EEECCCCCceEEE
Confidence 3445 8999999988754 3 3 478889998775 344554444556678999985 222 23333 346788
Q ss_pred EeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+++.+++...............|+|+|+.++
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 316 VNVNGGRAERVTFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred EECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 8888776543332222344578999998763
No 227
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=2.3e-07 Score=58.63 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=64.8
Q ss_pred CCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
..+.. +.|+|||+.|+... + ..|.+||+.+++. ..+......+....|+|++. .++ +.........++++
T Consensus 327 ~~~~~-p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~---~L~-f~~~~~g~~~L~~v 400 (428)
T PRK01029 327 RNSSC-PAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSL---HLV-YSAGNSNESELYLI 400 (428)
T ss_pred CCccc-eeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCC---EEE-EEECCCCCceEEEE
Confidence 44555 89999999888765 2 5799999988764 44443334566789999984 232 22223345678899
Q ss_pred eCCCCceEEEEecCCCEEEEEEcCCC
Q 033738 83 DFSTPELLKTIDVKFPIFSMVRGKKG 108 (112)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~ 108 (112)
|+..++..........+...+|+|-.
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCCC
Confidence 99877765555444467778888754
No 228
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.83 E-value=1.6e-07 Score=57.29 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=62.8
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCC-Cc---eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTST-GL---QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
+.++|+++.+++++ ++.+.+|+++. +. ....+. +......++++|+++ .++++...++.|.+||+.+
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~------~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNR------TLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCC------EEEEeeCCCCEEEEEEECC
Confidence 88999999998886 69999999864 32 122222 222346778999985 2345666779999999976
Q ss_pred CceEE-------EEecCCCEEEEEEcCCCcEeC
Q 033738 87 PELLK-------TIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 87 ~~~~~-------~~~~~~~v~~~~~~~~~~~~~ 112 (112)
...+. ..........+.|+|+|+++|
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 32221 122233567789999999875
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.3e-07 Score=57.40 Aligned_cols=99 Identities=22% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCCcCCCeEEcCCC-CEEEEEcCCeEEEEeCCC-Cceee-----------ecc-ccCCceEEEEEecCCCCccceeEEEE
Q 033738 6 RSYVSSPPAFSNDV-KRLLVCTSNTVSIFSTST-GLQIS-----------SLE-GHTAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 6 ~~~v~~~~~~~~~~-~~l~~~~~~~v~~~~~~~-~~~~~-----------~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
+..|.+ ++|-|.+ ..|+.+..+-|.+|.... ....+ .+. ....+|+.++|.+|+. .++
T Consensus 140 Qrnvtc-lawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-------~l~ 211 (445)
T KOG2139|consen 140 QRNVTC-LAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-------ILV 211 (445)
T ss_pred hcceeE-EEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-------EEe
Confidence 345777 9999976 566666678888997642 11111 111 1236899999999994 445
Q ss_pred eee-cCCcEEEEeCCCCceEEEE-ecCCCEEEEEEcCCCcEeC
Q 033738 72 TAS-LDETIKYWDFSTPELLKTI-DVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 72 ~~~-~d~~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 112 (112)
+++ .|..|.+||..++.++... .....+.-+.|+|||.++|
T Consensus 212 tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 212 TASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 555 5788999999998877665 3344788899999999886
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.81 E-value=2.8e-07 Score=57.77 Aligned_cols=99 Identities=17% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCCcCCCeEEcCCCCEEEEE-c-C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC--CcE
Q 033738 6 RSYVSSPPAFSNDVKRLLVC-T-S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD--ETI 79 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~-~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--~~i 79 (112)
.+.+.. ++|+|||+.|+.. + + ..|++|++.++. ...+..+........|+|++. +++ .+...+ ..+
T Consensus 233 ~~~~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~---~l~---~~s~~~g~~~i 304 (417)
T TIGR02800 233 PGMNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGK---SIA---FTSDRGGSPQI 304 (417)
T ss_pred CCCccc-eEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCC---EEE---EEECCCCCceE
Confidence 344555 8999999877654 3 3 468999988765 344444444445678999984 222 222222 368
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+++|+.+++.............+.|+|+|+.++
T Consensus 305 y~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 305 YMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred EEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 888888766543333334667789999998763
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.80 E-value=5.5e-07 Score=55.93 Aligned_cols=90 Identities=22% Similarity=0.186 Sum_probs=61.4
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
+.++|||++++..+ |+.|.++|+.+.+.+..+.... ....++++++++ .++++...++.+.++|.++.+.+.
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~------~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGK------YVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTT------EEEEEEEETTEEEEEETTT--EEE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCC------EEEEEecCCCceeEecccccccee
Confidence 67899999998887 9999999999998888887544 357899999996 233455678999999999988888
Q ss_pred EEecC--------CCEEEEEEcCCCc
Q 033738 92 TIDVK--------FPIFSMVRGKKGF 109 (112)
Q Consensus 92 ~~~~~--------~~v~~~~~~~~~~ 109 (112)
.+... ..+.++.-+|...
T Consensus 115 ~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 115 TIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp EEE--EE-TTTS---EEEEEE-SSSS
T ss_pred ecccccccccccCCCceeEEecCCCC
Confidence 77643 1455666566554
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.80 E-value=3.9e-08 Score=63.38 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=75.0
Q ss_pred CCCCCcCCCeEEcCCC-CEEEEEcCCeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 4 GGRSYVSSPPAFSNDV-KRLLVCTSNTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~-~~l~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
.|.+.|.. +.++|=+ ..+.+++|..+++|... ...++..+..+...+++++|||..+ +.++++..||.+.+
T Consensus 396 ~h~g~v~~-v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp------avF~~~d~~G~l~i 468 (555)
T KOG1587|consen 396 THIGPVYA-VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP------AVFATVDGDGNLDI 468 (555)
T ss_pred ccCcceEe-eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc------eEEEEEcCCCceeh
Confidence 46778887 8888866 45556669999999977 4556667777777899999999987 67889999999999
Q ss_pred EeCCCC--ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 82 WDFSTP--ELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
||+... .++....... ....+.|+++|+.+
T Consensus 469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL 501 (555)
T ss_pred hhhhccccCCcccccccccccceeecCCCCcEE
Confidence 998753 3333333334 56667777777654
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.9e-07 Score=59.20 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=70.8
Q ss_pred CCCcCCCeEEcCCCCEEEEE-c--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEee---ecCCcE
Q 033738 6 RSYVSSPPAFSNDVKRLLVC-T--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA---SLDETI 79 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~d~~i 79 (112)
.+.|.+ +.|+|+++-++.. + -..+.++|++ +..+..+. +++-+++-|+|.++ +++-+ ...|.+
T Consensus 270 ~GPVhd-v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~-------ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 270 EGPVHD-VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGN-------IILLAGFGNLPGDM 338 (566)
T ss_pred CCCceE-EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCC-------EEEEeecCCCCCce
Confidence 578888 9999999777654 3 3889999987 55555553 56668899999996 33333 345899
Q ss_pred EEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
-+||..+.+++..+.... .+-..|+|||++++
T Consensus 339 EvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFL 370 (566)
T ss_pred EEEeccchhhccccccCC-ceEEEEcCCCcEEE
Confidence 999999988777776543 44469999999874
No 234
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.79 E-value=1.4e-07 Score=60.07 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
...+.+ ++++|+.+.++.|+ ||+|.+||...+... .....-..+.++|+|++. +++.++..|.+.+||+
T Consensus 259 ~s~v~~-ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-------i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVIC-CARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-------IFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceE-EecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-------EEEEEcCCceEEEEEe
Confidence 456776 89999999999998 999999998766322 222334467999999994 8889999999999997
Q ss_pred CC
Q 033738 85 ST 86 (112)
Q Consensus 85 ~~ 86 (112)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 63
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.6e-07 Score=59.98 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc------ccCC-----ceEEEEEecCCCCccceeEEEEee
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE------GHTA-----PVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
.+.+.. +.+++...+|++|+ +|.|..||.++......+. .+.+ .|+++.|+.++ ..++.|
T Consensus 175 ~~~lN~-v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-------L~~aVG 246 (703)
T KOG2321|consen 175 SGELNV-VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-------LHVAVG 246 (703)
T ss_pred ccccee-eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-------eeEEee
Confidence 356776 88899999999999 8999999998765443332 2222 38999999888 367899
Q ss_pred ecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCC
Q 033738 74 SLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKK 107 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~ 107 (112)
..+|.+.+||++..+++..-.+.. ++..+.|.+.
T Consensus 247 ts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred ccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 999999999999988876655443 8888888665
No 236
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.77 E-value=3.8e-09 Score=69.66 Aligned_cols=72 Identities=25% Similarity=0.449 Sum_probs=65.8
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
..||.+.+.. ++.+.+...+++++ |..|++|-+..+..+..+.+|++.|++++|+|-. +.+.||+++
T Consensus 228 ~rGhs~ditd-lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----------sss~dgt~~ 295 (1113)
T KOG0644|consen 228 CRGHSGDITD-LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----------SSSDDGTCR 295 (1113)
T ss_pred CCCCccccch-hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----------cCCCCCceE
Confidence 4689999998 99998888888888 8999999999999999999999999999999976 678899999
Q ss_pred EEeCC
Q 033738 81 YWDFS 85 (112)
Q Consensus 81 ~~~~~ 85 (112)
+||.+
T Consensus 296 ~wd~r 300 (1113)
T KOG0644|consen 296 IWDAR 300 (1113)
T ss_pred ecccc
Confidence 99976
No 237
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.77 E-value=5.2e-08 Score=61.86 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=65.0
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
++|.+.|.+ +.|++..+.+++|+ |-..++||.. |..+..-..|+-++++++|.|+. .++.++. .++|+
T Consensus 183 kAHDGiiL~-~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~--------~~~v~S~-nt~R~ 251 (737)
T KOG1524|consen 183 RAHDGLVLS-LSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK--------DYLLWSY-NTARF 251 (737)
T ss_pred eccCcEEEE-eecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc--------ceeeeee-eeeee
Confidence 578899998 99999999999999 8999999976 65666667789999999999995 2333332 23331
Q ss_pred EeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
=. +.-..+..++|++||..+
T Consensus 252 ~~----------p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 252 SS----------PRVGSIFNLSWSADGTQA 271 (737)
T ss_pred cC----------CCccceEEEEEcCCCcee
Confidence 11 111277888999888653
No 238
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.66 E-value=2.5e-06 Score=52.12 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=63.3
Q ss_pred CCcCCCeEEcCCCCEEEEEc--CCeEEEEeCC-CCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCT--SNTVSIFSTS-TGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+.... +.++|+++.|+.++ ++.|..|+++ ++.. ..... ..+....++++|+++ .++++...++.+.+
T Consensus 35 ~~~~~-l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~------~l~v~~~~~~~v~v 106 (330)
T PRK11028 35 GQVQP-MVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGR------FLFSASYNANCVSV 106 (330)
T ss_pred CCCcc-EEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCC------EEEEEEcCCCeEEE
Confidence 34455 89999999987765 6889999986 3332 12222 223457899999985 22334445889999
Q ss_pred EeCCC-Cc---eEEEEecCCCEEEEEEcCCCcEeC
Q 033738 82 WDFST-PE---LLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 82 ~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
|++.+ +. .+..+........++++|+|+++|
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 107 SPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred EEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 99863 32 223233333566788999998774
No 239
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.64 E-value=1.7e-07 Score=60.40 Aligned_cols=93 Identities=25% Similarity=0.239 Sum_probs=69.7
Q ss_pred eEEcCC---CCEEEEEc-CCeEEEEeCCCCc------eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 13 PAFSND---VKRLLVCT-SNTVSIFSTSTGL------QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 13 ~~~~~~---~~~l~~~~-~~~v~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
..|++. .+.|+.+. +|.|.++|....+ .+..+..|.+.|..+.|.|.. ..+++++.|.++++|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge-------~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGE-------SLLVSASGDSTIRPW 127 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCc-------eeEEEccCCceeeee
Confidence 355542 35667777 7999999986532 234556799999999999944 366799999999999
Q ss_pred eCCCCceEEE--EecCC-CEEEEEEcCCCcEeC
Q 033738 83 DFSTPELLKT--IDVKF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 83 ~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~~~ 112 (112)
|+.++.+... +.+|. .+.+++|.|....+|
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVF 160 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcce
Confidence 9998887655 66666 888999988766544
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.1e-07 Score=57.76 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=63.2
Q ss_pred CCcCCCeEEcCCCCEEEEEc-C---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec------C
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL------D 76 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------d 76 (112)
+.-.+ +-|+|.|+.++.++ + |.|.+||..+.+.+..+.... .+-++|+|+|. +++++.. |
T Consensus 312 gpRN~-~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe-------~flTATTaPRlrvd 381 (566)
T KOG2315|consen 312 GPRNT-AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGE-------YFLTATTAPRLRVD 381 (566)
T ss_pred CCccc-eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCc-------EEEEEeccccEEec
Confidence 44455 88999999988776 3 999999999887777776543 35679999995 5556654 5
Q ss_pred CcEEEEeCCCCceEEEEecCCCEEEEEEcC
Q 033738 77 ETIKYWDFSTPELLKTIDVKFPIFSMVRGK 106 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~ 106 (112)
..+++|++. |..+......+..+.+.|-|
T Consensus 382 Ng~Kiwhyt-G~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 382 NGIKIWHYT-GSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred CCeEEEEec-CceeehhhhhHhHhheeeee
Confidence 778899986 65554443333455566654
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.61 E-value=1.2e-06 Score=52.94 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=66.7
Q ss_pred eEEcCCCCEEEEEcC---CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 13 PAFSNDVKRLLVCTS---NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
++|++|..++++-.| +.+.+||++..+. ..+-....+|....|.|..+ -++.+.....+++|......+
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~WdP~~p-------rL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWDPGRP-------RLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeCCCCc-------eEEEEcCCceEEEEcCCCceE
Confidence 899999999999874 7899999987653 33333567899999999885 334566666799998875444
Q ss_pred EEEEecCCCEEEEEEcCCCcEe
Q 033738 90 LKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+..-..+-.+..+.|+-+|+.+
T Consensus 396 V~vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 396 VGVPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred EecCCCCceeeeEEecCCCcEE
Confidence 4333333488888888887754
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=7.7e-07 Score=59.93 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=66.6
Q ss_pred cCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE-EE
Q 033738 16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK-TI 93 (112)
Q Consensus 16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~ 93 (112)
+++.-++++|+ .+.+.+|+..--+....+.+|++.+..+.++.+++ ++++.+.|+.+|+|++++++... +.
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~-------~i~s~SdDRsiRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR-------YIASVSDDRSIRLWPIDSREVLGCTG 214 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc-------EEEEEecCcceeeeecccccccCccc
Confidence 44445666777 79999999763232336889999999999999996 88899999999999999887665 43
Q ss_pred ecCC-CEEEEEEcCC
Q 033738 94 DVKF-PIFSMVRGKK 107 (112)
Q Consensus 94 ~~~~-~v~~~~~~~~ 107 (112)
-.|. .++.+.|.|+
T Consensus 215 fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN 229 (967)
T ss_pred ccccceeEEEEeccc
Confidence 4454 8888888887
No 243
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.4e-06 Score=57.77 Aligned_cols=92 Identities=51% Similarity=0.801 Sum_probs=77.6
Q ss_pred cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738 9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE 88 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 88 (112)
+.....|++|++.++...+..|.+|...++.++..+..|..++..+.+.|... .. .++.+++.+|.|++||...+.
T Consensus 18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~---~~-~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSE---NA-NYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred eecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCc---cc-eEEEEEecCccEEEecCCCcE
Confidence 33347799999999999999999999999999999999999999999988774 22 377799999999999999999
Q ss_pred eEEEEecCCCEEEEEE
Q 033738 89 LLKTIDVKFPIFSMVR 104 (112)
Q Consensus 89 ~~~~~~~~~~v~~~~~ 104 (112)
.++++..+.++.++.+
T Consensus 94 Llkt~~~~~~v~~~~~ 109 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVY 109 (792)
T ss_pred EEEEEecCCceeEEEe
Confidence 9888877666655554
No 244
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.6e-06 Score=52.73 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=75.0
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
|...|++ ++|....+.+++|. +++|..-|+.+.+.+..+.. ..+.|..+..+|... ++++.+.++.+.+
T Consensus 104 H~SNIF~-L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-------~~~~~t~~~~V~~ 175 (609)
T KOG4227|consen 104 HRSNIFS-LEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-------TLIVVTRAKLVSF 175 (609)
T ss_pred cccceEE-EEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCc-------eEEEEecCceEEE
Confidence 5578888 99999888999998 89999999998887766543 346899999999874 7779999999999
Q ss_pred EeCCCCc----eEEEEecCCCEEEEEEcCCCcE
Q 033738 82 WDFSTPE----LLKTIDVKFPIFSMVRGKKGFA 110 (112)
Q Consensus 82 ~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 110 (112)
||.+... ++.....+.....+-|+|....
T Consensus 176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9988643 2222233446777778876543
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=2e-06 Score=52.72 Aligned_cols=92 Identities=13% Similarity=0.193 Sum_probs=74.4
Q ss_pred eEEcCC--CCEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738 13 PAFSND--VKRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE 88 (112)
Q Consensus 13 ~~~~~~--~~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 88 (112)
+.|-+. ...|++++ -+.+++||.+.+ +++..+...+.+++++...|+++ .++++...+.+..+|.+.+.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-------~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-------FIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-------EEEEecccchhheecccCce
Confidence 677776 68889998 799999999876 45567777788999999999995 67799999999999999887
Q ss_pred eEEE-EecCC-CEEEEEEcCCCcEe
Q 033738 89 LLKT-IDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 89 ~~~~-~~~~~-~v~~~~~~~~~~~~ 111 (112)
.+.. +..-. .++++..+|.++++
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceE
Confidence 7655 44333 88888888887664
No 246
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=1e-06 Score=53.14 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=50.6
Q ss_pred EEEEE-cCCeEEEEeCCCCceeeeccccCCceEEEEEecC-CCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 21 RLLVC-TSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPA-STPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 21 ~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
.++++ +.+++++||..+++.+..++.+...+..++|..+ +. + .+.+++.||.|++||++......
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~--h----~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP--H----GVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC--C----eeEEeccCCeEEEEEeecchhhh
Confidence 35555 4899999999999889999988888888888664 32 1 45599999999999998754433
No 247
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.53 E-value=9e-06 Score=51.53 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=75.2
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CC-eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SN-TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+|.+.|.- ..+..+++.++.|. || .+-++|..+++ ...+...-+.+..+..++++. +++.+.....+-+
T Consensus 357 ~~~~~VrY-~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK-------~~vvaNdr~el~v 427 (668)
T COG4946 357 GKKGGVRY-RRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGK-------KVVVANDRFELWV 427 (668)
T ss_pred CCCCceEE-EEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCc-------EEEEEcCceEEEE
Confidence 35555665 66777777788887 75 89999999875 566666778899999999995 6667888888888
Q ss_pred EeCCCCceEEEEecC-CCEEEEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDVK-FPIFSMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 111 (112)
.|+.+|+....-+.. .-+....|+|+++++
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeE
Confidence 899998764333322 278889999999875
No 248
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=4.3e-06 Score=52.89 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=58.7
Q ss_pred cCCCeEEcCCCCEEEEE-c---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 9 VSSPPAFSNDVKRLLVC-T---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~-~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
... ..|+|||+.++.. + +..|.++|+.+++ ...+...........|+|+++ +++ +.........|+++|+
T Consensus 235 ~~~-~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~---~I~-F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 235 LVV-SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDK---RIV-FVSDRLGYPNIFMKKL 308 (419)
T ss_pred EEe-eEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCC---EEE-EEECCCCCceEEEEEC
Confidence 344 7899999877654 3 3678888988775 455554433334557999995 332 2211222236888898
Q ss_pred CCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 85 STPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.+++..+....... ...|+|+|+.+
T Consensus 309 ~~g~~~rlt~~g~~--~~~~SPDG~~I 333 (419)
T PRK04043 309 NSGSVEQVVFHGKN--NSSVSTYKNYI 333 (419)
T ss_pred CCCCeEeCccCCCc--CceECCCCCEE
Confidence 87766443332222 34899999876
No 249
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.47 E-value=1.9e-07 Score=58.33 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
..|.. +.|-|-.-+|++++ .|.++.-|+.+|+.+..+....+.+..+.-+|-. +++-.|...|++.+|...
T Consensus 210 ~~v~r-LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-------aVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 210 IRVAR-LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-------AVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred Cchhh-hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-------ceEEEcCCCceEEecCCC
Confidence 34555 78888887888888 6999999999999888888777888888888877 377789999999999998
Q ss_pred CCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 86 TPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 86 ~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
..+++..+-.|. +|.++++.++|.++
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YM 308 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYM 308 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEE
Confidence 888877776666 99999999999986
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=4.1e-07 Score=58.15 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=63.5
Q ss_pred ccCCCCCcCCCeEEcCC--CCEEEEEc-CCeEEEEeCCC----------CceeeeccccCCceEEEEEecCCCCccceeE
Q 033738 2 IRGGRSYVSSPPAFSND--VKRLLVCT-SNTVSIFSTST----------GLQISSLEGHTAPVTTVIVVPASTPATKILS 68 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~--~~~l~~~~-~~~v~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 68 (112)
-+||+..|++ .+|-|. .+.+++|. |..|+++|+.. ......+..|...|..++..|+++ .
T Consensus 89 ~TgHtaNIFs-vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P------h 161 (758)
T KOG1310|consen 89 STGHTANIFS-VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP------H 161 (758)
T ss_pred ecccccceeE-EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC------c
Confidence 3689999998 999985 35667776 99999999974 123455667888899999999986 3
Q ss_pred EEEeeecCCcEEEEeCCCC
Q 033738 69 YCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~ 87 (112)
.+.+++.||+++-+|+++.
T Consensus 162 tfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREP 180 (758)
T ss_pred eEEEecCCcceeeecccCC
Confidence 5669999999999999863
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=55.98 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=73.1
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
|++ ++|+.+|-.++.|+ .|.+.+||+++.+++..-. ....++..+.|.+.+. +.+++ + .....+++||-.+
T Consensus 231 vTa-l~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~-q~~v~----S-~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 231 VTA-LKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ-QNKVV----S-MDKRILKIWDECT 303 (703)
T ss_pred ceE-EEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC-CceEE----e-cchHHhhhccccc
Confidence 676 99999999999998 8999999999876554332 3456788999977632 12222 3 4457899999999
Q ss_pred CceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 87 PELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
|+....+.....+..+++-|++-++|
T Consensus 304 Gk~~asiEpt~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 304 GKPMASIEPTSDLNDFCFVPGSGMFF 329 (703)
T ss_pred CCceeeccccCCcCceeeecCCceEE
Confidence 99988887777888888888776654
No 252
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.5e-06 Score=55.22 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=68.7
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceE-EEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVT-TVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL 90 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 90 (112)
+.|+|.-..+|++. +|.+.+..++ .+.+..++.++..++ +++|.|||. .++.+-.||+|++.|..+|..+
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-------llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-------LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-------EEEEEecCCeEEEEEccCCCce
Confidence 78999999999998 8999888888 556778876666666 999999995 7779999999999999998877
Q ss_pred EE--EecCCCEEEEEEc
Q 033738 91 KT--IDVKFPIFSMVRG 105 (112)
Q Consensus 91 ~~--~~~~~~v~~~~~~ 105 (112)
.. +....++..+-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 66 3333466666665
No 253
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.9e-06 Score=53.14 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=63.7
Q ss_pred ccCCCCCcCCCeEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|...|.+ +++||..+ ++..++ +..|++.|+.+......+..+ ..+++++|.-+.. .++..|..+|.|
T Consensus 189 lp~~g~~Ird-lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~------h~IYaGl~nG~V 260 (463)
T KOG1645|consen 189 LPGEGSFIRD-LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER------HVIYAGLQNGMV 260 (463)
T ss_pred ccccchhhhh-hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc------ceeEEeccCceE
Confidence 5667778888 99999887 556667 899999999988777777766 7789999988875 356688899999
Q ss_pred EEEeCCCC
Q 033738 80 KYWDFSTP 87 (112)
Q Consensus 80 ~~~~~~~~ 87 (112)
.+||++..
T Consensus 261 lvyD~R~~ 268 (463)
T KOG1645|consen 261 LVYDMRQP 268 (463)
T ss_pred EEEEccCC
Confidence 99999854
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.38 E-value=2.8e-05 Score=48.13 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=58.8
Q ss_pred CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee---------cCCcEEEEeCCCCceEEEEecCCC
Q 033738 28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS---------LDETIKYWDFSTPELLKTIDVKFP 98 (112)
Q Consensus 28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~ 98 (112)
+.+.++|..+.+.+..+.....+- .+ ++|+++ .++++.+ .+..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~------~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGS------FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCC------EEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 789999999998888887655443 34 899986 2344555 678999999999999888875332
Q ss_pred --------EEEEEEcCCCcEeC
Q 033738 99 --------IFSMVRGKKGFAVF 112 (112)
Q Consensus 99 --------v~~~~~~~~~~~~~ 112 (112)
...++++|||+++|
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~ 120 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLL 120 (352)
T ss_pred chhhccCccceEEECCCCCEEE
Confidence 33788999999875
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.34 E-value=7.4e-05 Score=46.23 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=60.5
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCC-Cceeee---cc----------ccCCceEEEEEecCCCCccceeEEEEeeecC
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTST-GLQISS---LE----------GHTAPVTTVIVVPASTPATKILSYCWTASLD 76 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 76 (112)
++++|++++|+++. ++.+.++++.. +..... +. .......++.++|+++ -++++.-..
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~------~v~v~dlG~ 165 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR------FVYVPDLGA 165 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS------EEEEEETTT
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC------EEEEEecCC
Confidence 78899999999887 79999999876 332211 10 1223457889999985 123344445
Q ss_pred CcEEEEeCCCCc--eE--EEE--ecCCCEEEEEEcCCCcEeC
Q 033738 77 ETIKYWDFSTPE--LL--KTI--DVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 77 ~~i~~~~~~~~~--~~--~~~--~~~~~v~~~~~~~~~~~~~ 112 (112)
..|++|++.... .. ..+ ......+.+.|+|+|+++|
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE
Confidence 689999887654 21 222 2334788899999999875
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=7.5e-06 Score=52.61 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec-----------CCcEEE
Q 033738 13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL-----------DETIKY 81 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~i~~ 81 (112)
+.|||.|.+|++-.-.-|.+|--.+...+..+. |. .|..+.|||... |+++-+. ...+.+
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~Ek-------YLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEK-------YLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccc-------eEEEecCCccccCcccCCCceEEE
Confidence 789999999998886678899766655555554 43 478999999984 6666432 257999
Q ss_pred EeCCCCceEEEEec--CC-CEE-EEEEcCCCcEe
Q 033738 82 WDFSTPELLKTIDV--KF-PIF-SMVRGKKGFAV 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~~--~~-~v~-~~~~~~~~~~~ 111 (112)
||+++|...+.+.. .. ..+ -..|+.|++++
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYF 320 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCcee
Confidence 99999988777765 22 232 24788887765
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.28 E-value=1.4e-05 Score=55.49 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=57.1
Q ss_pred ccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCC--c-----eeeeccccCCceEEEEEecCCCCccceeEEEEe
Q 033738 2 IRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG--L-----QISSLEGHTAPVTTVIVVPASTPATKILSYCWT 72 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~--~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 72 (112)
|..|...+.. ++.+++. .++++|+ ||+|++|+.+.- . ....+...+..+.++...+.+. .++.
T Consensus 1044 L~Ehs~~v~k-~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-------~~Av 1115 (1431)
T KOG1240|consen 1044 LHEHSSAVIK-LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-------QFAV 1115 (1431)
T ss_pred hhhccccccc-eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-------eEEE
Confidence 4567788887 7777655 9999999 899999998642 1 1122233466788888888885 6778
Q ss_pred eecCCcEEEEeCCC
Q 033738 73 ASLDETIKYWDFST 86 (112)
Q Consensus 73 ~~~d~~i~~~~~~~ 86 (112)
++.||.+++.++.-
T Consensus 1116 ~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDH 1129 (1431)
T ss_pred EcCCCeEEEEEccc
Confidence 89999999998764
No 258
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=9.5e-07 Score=55.57 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=61.7
Q ss_pred ccCCCCC--cCCCeE-EcCCCCEEEEEcC-CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 2 IRGGRSY--VSSPPA-FSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 2 ~~~h~~~--v~~~~~-~~~~~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
++||.+. |.+ +- |-|...++++|+| |.|.+|+-.+++.+....+...-|+|+.=+|--+ ++++.+-|.
T Consensus 387 YKGHrN~~TVKg-VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-------vLAsSGid~ 458 (559)
T KOG1334|consen 387 YKGHRNSRTVKG-VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-------VLASSGIDH 458 (559)
T ss_pred hcccccccccce-eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-------hhhccCCcc
Confidence 6788653 554 43 5688899999995 9999999998887777777666788999888876 778999999
Q ss_pred cEEEEeCC
Q 033738 78 TIKYWDFS 85 (112)
Q Consensus 78 ~i~~~~~~ 85 (112)
.|+||...
T Consensus 459 DVKIWTP~ 466 (559)
T KOG1334|consen 459 DVKIWTPL 466 (559)
T ss_pred ceeeecCC
Confidence 99999864
No 259
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.24 E-value=0.0002 Score=42.15 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=66.2
Q ss_pred cCCCeEEcCCCCEEEEE-c-CCeEEEEeCCCCce-e---e---eccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 9 VSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGLQ-I---S---SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~-~-~~~v~~~~~~~~~~-~---~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
... ++|+||++.|+.. + .+.|..+++..... + . .+....+..-.+++..++. ++++....+.|
T Consensus 136 pNG-i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-------l~va~~~~~~I 207 (246)
T PF08450_consen 136 PNG-IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-------LWVADWGGGRI 207 (246)
T ss_dssp EEE-EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--------EEEEEETTTEE
T ss_pred ccc-eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-------EEEEEcCCCEE
Confidence 345 8999999988765 4 68899999853211 1 1 2222223356889999885 56677778899
Q ss_pred EEEeCCCCceEEEEecC-CCEEEEEE-cCCCcEeC
Q 033738 80 KYWDFSTPELLKTIDVK-FPIFSMVR-GKKGFAVF 112 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~ 112 (112)
.+++.+ |+.+..+..+ ..+++++| .++.+.||
T Consensus 208 ~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred EEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 999987 8888888877 48999999 46666654
No 260
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.2e-05 Score=55.21 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=64.6
Q ss_pred cCCCCC--cCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCceeeec--ccc---CCceEEEEEecCCCCccceeEEEEee
Q 033738 3 RGGRSY--VSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQISSL--EGH---TAPVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 3 ~~h~~~--v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
..|... |.. +.+.+.| ..|++|+ +|.|++||++.......+ ..+ ++..+++..++..+ ++++|
T Consensus 1251 R~h~~~~~Iv~-~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-------iiAsG 1322 (1387)
T KOG1517|consen 1251 REHNDVEPIVH-LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-------IIASG 1322 (1387)
T ss_pred cccCCccccee-EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-------eeeec
Confidence 456665 777 8888876 3588888 999999999874222222 111 23488999999886 67777
Q ss_pred ecCCcEEEEeCCCCceEEEEec------C--CCEEEEEEcCC
Q 033738 74 SLDETIKYWDFSTPELLKTIDV------K--FPIFSMVRGKK 107 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~~~~~~------~--~~v~~~~~~~~ 107 (112)
+. +.+++|++. |+.+..++. . ..+.+++|+|-
T Consensus 1323 s~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred Cc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecch
Confidence 77 999999986 444333321 1 15678888873
No 261
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.23 E-value=0.00011 Score=44.49 Aligned_cols=95 Identities=15% Similarity=0.303 Sum_probs=67.5
Q ss_pred eEEcCCCCEEEEEc-C-----CeEEEEeCC-CCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec----------
Q 033738 13 PAFSNDVKRLLVCT-S-----NTVSIFSTS-TGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL---------- 75 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~-----~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------- 75 (112)
-.||+||++|++.- | |.|-+||.. ..+.+..+..+.-.-..+.+.|+++ .| .++.++-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~---tL--vVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE---TL--VVANGGIETHPDSGRAK 130 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC---EE--EEEcCCCccCcccCcee
Confidence 47999999999874 3 889999998 5677788887765567788999985 12 1223321
Q ss_pred ------CCcEEEEeCCCCceEEEEec----CC-CEEEEEEcCCCcEeC
Q 033738 76 ------DETIKYWDFSTPELLKTIDV----KF-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 76 ------d~~i~~~~~~~~~~~~~~~~----~~-~v~~~~~~~~~~~~~ 112 (112)
+..+.+.|..+|+.+.+... +. .+.-+++.++|..++
T Consensus 131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~ 178 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAF 178 (305)
T ss_pred cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEE
Confidence 23566667788888777543 33 789999999887653
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.23 E-value=0.00017 Score=44.62 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=59.9
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCC--CCce--eeecc---c---cCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTS--TGLQ--ISSLE---G---HTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~--~~~~--~~~~~---~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.|+|++++++... ++.|.++++. .+.. +..+. . .......++++|+++ -++++......|.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~------~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR------FLYVSNRGSNSIS 270 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS------EEEEEECTTTEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC------EEEEEeccCCEEE
Confidence 78999999888776 6999999887 3321 11111 1 112467899999996 2344555677899
Q ss_pred EEeCC--CCce--EEEEec-CCCEEEEEEcCCCcEeC
Q 033738 81 YWDFS--TPEL--LKTIDV-KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~--~~~~--~~~~~~-~~~v~~~~~~~~~~~~~ 112 (112)
++++. +|.. +..+.. ....+.+.++|+|++++
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 99983 3433 333333 33678899999999875
No 263
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=6.5e-06 Score=50.12 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCCCcCCCeEEcC-CCCEEEEEc-CCeEEEEeCCCCce---eeeccccCCceEEEEE--ecCCCCccceeEEEEeeecCC
Q 033738 5 GRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQ---ISSLEGHTAPVTTVIV--VPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 5 h~~~v~~~~~~~~-~~~~l~~~~-~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~d~ 77 (112)
|...|.+ +..-. +++.|.+.+ +|.|++||++.-++ +.+..+|.....-+-+ .+.+. .+++++.|-
T Consensus 297 h~Ssvts-lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-------~I~s~GdDc 368 (425)
T KOG2695|consen 297 HDSSVTS-LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-------SIFSVGDDC 368 (425)
T ss_pred cCcchhh-hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-------eEEEccCee
Confidence 5566665 66554 677777777 89999999976555 6666666544333322 33332 556899999
Q ss_pred cEEEEeCCCCceEEEEecCC
Q 033738 78 TIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~~ 97 (112)
..|+|.++.|..+.+++.+.
T Consensus 369 ytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEEEecccCceeeccCCCC
Confidence 99999999999988887654
No 264
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.18 E-value=2.3e-05 Score=49.71 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=57.7
Q ss_pred eEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~~~~~ 86 (112)
.+|+|||+.++... | -.|.++|+..+. ...+....+.-..=.|+|+|+ +++ .+.+..| .|.+++.+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~---~iv---f~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGS---KIV---FTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCC---EEE---EEeCCCCCcceEEECCCC
Confidence 78999999888775 4 467788887665 444554444334567899995 332 3344444 566667776
Q ss_pred CceEEEEecCCCEEEEEEcCCCcEe
Q 033738 87 PELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+...+.......-....|+|+|+++
T Consensus 316 ~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 316 SQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred CceeEeeccCCCCcCccCCCCCCEE
Confidence 5553333333333377899999876
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.15 E-value=4.2e-06 Score=49.17 Aligned_cols=72 Identities=24% Similarity=0.268 Sum_probs=56.7
Q ss_pred CcCCCeEEcCCCCEE-EEEc-CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 8 YVSSPPAFSNDVKRL-LVCT-SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l-~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
.|.+ ++-+|..+.+ ++|+ ||.+-+||.+....+ ..+..|+.+++.+-|+|..+ .+++ +++.||.+..||.
T Consensus 181 ~v~~-l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--~~Lf----t~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTA-LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--EHLF----TCSEDGSLWHWDA 253 (319)
T ss_pred cchh-hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--hhee----EecCCCcEEEEcC
Confidence 3665 8888876554 5666 799999999876433 46678999999999999887 5555 9999999999997
Q ss_pred CC
Q 033738 85 ST 86 (112)
Q Consensus 85 ~~ 86 (112)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 63
No 266
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.14 E-value=1.8e-05 Score=31.89 Aligned_cols=37 Identities=49% Similarity=0.769 Sum_probs=29.9
Q ss_pred eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 40 QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
....+..+...+.++.|++.+. .+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-------EEEEecCCCeEEEcC
Confidence 3455566778899999998874 677999999999996
No 267
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.13 E-value=6.3e-05 Score=49.15 Aligned_cols=74 Identities=24% Similarity=0.263 Sum_probs=53.3
Q ss_pred CCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCce--ee----eccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 7 SYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGLQ--IS----SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 7 ~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
..|.+ ++|+|.. ++++.|. +|.|.+||++.+.. .. ....|..++..+.|-.+..+ .. +++++.||.
T Consensus 243 s~v~~-~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~----f~s~ssDG~ 316 (555)
T KOG1587|consen 243 SEVTC-LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TE----FFSLSSDGS 316 (555)
T ss_pred CceeE-EEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-Cc----eEEEecCCc
Confidence 45676 9999965 5556666 89999999987543 21 12357788899999876642 22 448888999
Q ss_pred EEEEeCCC
Q 033738 79 IKYWDFST 86 (112)
Q Consensus 79 i~~~~~~~ 86 (112)
|..|+++.
T Consensus 317 i~~W~~~~ 324 (555)
T KOG1587|consen 317 ICSWDTDM 324 (555)
T ss_pred Eeeeeccc
Confidence 99998763
No 268
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=2.3e-05 Score=52.36 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=71.3
Q ss_pred eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCcc------ceeEEEEeeecCCcEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPAT------KILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
+.|+|.| +++.|+...|.+.|..+-+.+..+.-|...|+.+.|.|...+.. ..+ +++++...|.|.+||...
T Consensus 21 ~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~l-liAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL-LIASADISGRIILVDFVL 98 (1062)
T ss_pred cccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccce-eEEeccccCcEEEEEehh
Confidence 7888866 77888888999999988888888888999999999998532101 112 577888889999999998
Q ss_pred CceEEEEecCC-CEEEEEEcC
Q 033738 87 PELLKTIDVKF-PIFSMVRGK 106 (112)
Q Consensus 87 ~~~~~~~~~~~-~v~~~~~~~ 106 (112)
+..+..+..+. ++..++|-+
T Consensus 99 ~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 99 ASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred hhhhhhhcCCCcchhheeeee
Confidence 87777776665 777777754
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.11 E-value=0.00037 Score=43.30 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred EEcC-CCCEEEEEcCCeEEEEeCCCC-----ceeeeccc-------cCCceEEEEEecCCCCccceeEEEEeeec-----
Q 033738 14 AFSN-DVKRLLVCTSNTVSIFSTSTG-----LQISSLEG-------HTAPVTTVIVVPASTPATKILSYCWTASL----- 75 (112)
Q Consensus 14 ~~~~-~~~~l~~~~~~~v~~~~~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (112)
.+.+ +|+++.....|.|.+.|+... +....+.. ..+...-+++++++. ++ |++.-+.
T Consensus 200 ~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~l--yV~~~~~~~~th 274 (352)
T TIGR02658 200 AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RI--YLLADQRAKWTH 274 (352)
T ss_pred ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC---EE--EEEecCCccccc
Confidence 3455 777776666799999996432 22222211 122334589999884 22 2223222
Q ss_pred ---CCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCc-EeC
Q 033738 76 ---DETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGF-AVF 112 (112)
Q Consensus 76 ---d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 112 (112)
.+.+.++|..+++.+..+.....+..++++||++ .+|
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLY 315 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEE
Confidence 2589999999999999999888999999999998 654
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00014 Score=43.59 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=62.8
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCce--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC-CCc
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQ--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS-TPE 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~ 88 (112)
+.|++.+..++++. +|.+.+.+...+.. ...++.|+-+.+...|+...+ .++.+|+.|+.+..||++ .++
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p------nlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP------NLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC------ceEEecCCCceEEEEEecCCcc
Confidence 67888888777775 78888665544433 336778888888888887665 367799999999999998 444
Q ss_pred eEEE-EecC-CCEEEEEEcCC
Q 033738 89 LLKT-IDVK-FPIFSMVRGKK 107 (112)
Q Consensus 89 ~~~~-~~~~-~~v~~~~~~~~ 107 (112)
.+.. .+-| ..|.++.-+|.
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred eeeecceeeecceEEEecCCC
Confidence 4433 2223 37777766654
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.00031 Score=43.02 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=66.6
Q ss_pred cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCcee----eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQI----SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
+.. ..+.|++++|++.. -..|.+|++..++.. ..++ ....-..+.|+|+++ + .++..-.+++|-+|
T Consensus 147 ~H~-a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k----~--aY~v~EL~stV~v~ 218 (346)
T COG2706 147 VHS-ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGK----Y--AYLVNELNSTVDVL 218 (346)
T ss_pred cce-eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCc----E--EEEEeccCCEEEEE
Confidence 554 78899999999887 478999999866422 2222 334457899999996 2 23456678899999
Q ss_pred eCCCC--c--eEEEE-------ecCCCEEEEEEcCCCcEeC
Q 033738 83 DFSTP--E--LLKTI-------DVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 83 ~~~~~--~--~~~~~-------~~~~~v~~~~~~~~~~~~~ 112 (112)
.+... + .++.+ ....+..++..+++|++||
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 88763 2 22222 1223788899999999886
No 272
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.08 E-value=2.6e-05 Score=49.49 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=62.0
Q ss_pred CcCCCeEEcCCCCEEEEEc----C-CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC--cEE
Q 033738 8 YVSSPPAFSNDVKRLLVCT----S-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE--TIK 80 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~----~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~ 80 (112)
.+.. .+|+|+++.++... . ..+.++++++++...... ..+.-..-+|+|+++ +++ ++...|+ .|+
T Consensus 194 ~~~~-p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~---~l~---f~~~rdg~~~iy 265 (425)
T COG0823 194 LILT-PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS---KLA---FSSSRDGSPDIY 265 (425)
T ss_pred ceec-cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC---EEE---EEECCCCCccEE
Confidence 4444 78999998877664 2 358899998876444333 223334668999995 333 3444444 567
Q ss_pred EEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
++|+..+...+.......-....|+|+|+.++
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCCCCCEEE
Confidence 77888776444223333444789999998764
No 273
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=2.7e-05 Score=49.37 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=71.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|.+|.+.|.. +.|...|..|++++ |..+.+||...++....+. +|...|....|-|... +. .+++++.||.+
T Consensus 138 L~~H~GcVnt-V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~-d~----ti~~~s~dgqv 211 (559)
T KOG1334|consen 138 LNKHKGCVNT-VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG-DR----TIVTSSRDGQV 211 (559)
T ss_pred ccCCCCccce-eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC-Cc----CceeccccCce
Confidence 5679999998 99999999999999 7999999998877665554 5777777667777542 01 45699999999
Q ss_pred EEEeCCC-CceE--EEEecCC-CEEEEEEcCCCc
Q 033738 80 KYWDFST-PELL--KTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 80 ~~~~~~~-~~~~--~~~~~~~-~v~~~~~~~~~~ 109 (112)
++-.+.. +.+. ..+..|. ++.-++.-|+..
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCC
Confidence 9876543 3222 1222222 666666555543
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.99 E-value=1.6e-05 Score=48.41 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=61.4
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
+.+|.+.+.+ ++|.+....|.++. |..+.+||+--.+ ....+.+|.+.|..+...+... .+.+++.|+.|
T Consensus 193 ~~~h~~~~~~-l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-------~l~S~~edg~i 264 (404)
T KOG1409|consen 193 FNGHTGEVTC-LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-------QLISCGEDGGI 264 (404)
T ss_pred EcCcccceEE-EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-------eeeeccCCCeE
Confidence 5689999998 99999888898887 9999999985432 2356667888888776665552 45699999999
Q ss_pred EEEeCCCC
Q 033738 80 KYWDFSTP 87 (112)
Q Consensus 80 ~~~~~~~~ 87 (112)
-+||....
T Consensus 265 ~~w~mn~~ 272 (404)
T KOG1409|consen 265 VVWNMNVK 272 (404)
T ss_pred EEEeccce
Confidence 99998754
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.99 E-value=5.1e-06 Score=59.64 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=58.1
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+.|.+.+++ +++.|..+.|++|+ +|.|++||++..+..+.++. +. .. .++++++..|.+++
T Consensus 2333 ~~H~~gaT~-l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~-------~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2333 TCHDGGATV-LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TR-------EYFVTGSSEGNIKI 2394 (2439)
T ss_pred eecCCCceE-EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hh-------heeeccCcccceEE
Confidence 458888888 99999999999999 99999999987765555543 33 22 27789999999999
Q ss_pred EeCCCCceEEEEe
Q 033738 82 WDFSTPELLKTID 94 (112)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (112)
|++..-..+.+++
T Consensus 2395 w~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFP 2407 (2439)
T ss_pred EEccccchhhcCc
Confidence 9998765555544
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=0.00055 Score=48.27 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=61.1
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCCCceeee-------------cccc--------CCceEEEEEecCCCCccceeEE
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISS-------------LEGH--------TAPVTTVIVVPASTPATKILSY 69 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~-------------~~~~--------~~~v~~~~~~~~~~~~~~~~~~ 69 (112)
++++|+++.|+.+. ++.|++||++++..... +-.. -.....+++++++. +
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-------L 817 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-------I 817 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-------E
Confidence 88999998666554 69999999886542110 0000 01235788888884 6
Q ss_pred EEeeecCCcEEEEeCCCCceEEEEecC--------------CCEEEEEEcCCCcEe
Q 033738 70 CWTASLDETIKYWDFSTPELLKTIDVK--------------FPIFSMVRGKKGFAV 111 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~ 111 (112)
+++...++.|++||..++......... .....++++++|+.+
T Consensus 818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 678888999999999877654333211 145678888888743
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.00039 Score=42.60 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=63.8
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCC-Ccee--eeccccCCc----------eEEEEEecCCCCccceeEEEEeee-cC
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTST-GLQI--SSLEGHTAP----------VTTVIVVPASTPATKILSYCWTAS-LD 76 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~~~~-~d 76 (112)
++++++|++++++. .+.|.++.++. |... .....|.+. +....+.|+++ ++++.. .-
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-------~l~v~DLG~ 166 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-------YLVVPDLGT 166 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-------EEEEeecCC
Confidence 78999999999998 59999999865 4211 122223333 67888999995 444443 33
Q ss_pred CcEEEEeCCCCceEEE----EecCCCEEEEEEcCCCcEeC
Q 033738 77 ETIKYWDFSTPELLKT----IDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~ 112 (112)
-++.+|++.+|..... ++.....+-+.|+|++++.|
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY 206 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY 206 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence 5799999987754322 23344778899999998765
No 278
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00026 Score=45.73 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=69.9
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK 96 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 96 (112)
..++-|. .|.|.+|+...++....+. .|.+.|.++.++.+.. .+.+++.|..+-.|+..++..++.+...
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-------ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-------CIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-------ceEecCCceeEEEEecccceeeeeeccC
Confidence 4555665 7999999999887666665 5888999998887763 5669999999999999999988888776
Q ss_pred C-CEEEEEEcCCCcEe
Q 033738 97 F-PIFSMVRGKKGFAV 111 (112)
Q Consensus 97 ~-~v~~~~~~~~~~~~ 111 (112)
. .+.+++.+|||..+
T Consensus 144 ~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKIL 159 (541)
T ss_pred CCccceEEEcCCCCEE
Confidence 6 88999999998765
No 279
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=1.5e-05 Score=32.09 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=27.2
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEe
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFS 34 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~ 34 (112)
+..|...+.+ +.|+++++.+++++ |+.+++|+
T Consensus 8 ~~~~~~~i~~-~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTS-VAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeE-EEECCCCCEEEEecCCCeEEEcC
Confidence 3567788887 99999999999888 89999986
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.98 E-value=2e-05 Score=52.45 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=69.1
Q ss_pred CccCCCCCcCCCeEEcCCC-CEEEEEc-CCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCC
Q 033738 1 MIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE 77 (112)
Q Consensus 1 ~~~~h~~~v~~~~~~~~~~-~~l~~~~-~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (112)
++.||...+++ +-|+|.. ..+++++ |..+..||+++.. .+..+.........++|+...+ -+.+.+...
T Consensus 109 ~lhghsraitd-~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p-------~vlasshg~ 180 (1081)
T KOG0309|consen 109 VLHGHSRAITD-INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP-------NVLASSHGN 180 (1081)
T ss_pred EEecCccceec-cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc-------chhhhccCC
Confidence 36789999998 9999976 6778888 9999999998754 3445555555667889988764 233566677
Q ss_pred cEEEEeCCCC-ceEEEEecCC-CEEEEEEc
Q 033738 78 TIKYWDFSTP-ELLKTIDVKF-PIFSMVRG 105 (112)
Q Consensus 78 ~i~~~~~~~~-~~~~~~~~~~-~v~~~~~~ 105 (112)
.+++||.+.| .++..++.+- .++.+.|+
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHh
Confidence 8999999876 4455555543 44444443
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.95 E-value=0.00044 Score=41.22 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=56.6
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCcee-----eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-----SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
..|+.....++++. ||++.+||++..... ..-+.|.+.+..+.|++.+. + .++.-.-.-+.+.+.|+++
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----l-DLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----L-DLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc----c-eEEEEecCcceEEEEEccc
Confidence 67888888899998 999999999764322 23345888999999998763 2 2444555667899999998
Q ss_pred CceEEEEe
Q 033738 87 PELLKTID 94 (112)
Q Consensus 87 ~~~~~~~~ 94 (112)
+...+.+.
T Consensus 284 ~~~~q~I~ 291 (344)
T KOG4532|consen 284 YVNHQVIV 291 (344)
T ss_pred CceeeEEe
Confidence 87655543
No 282
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.00023 Score=49.35 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=49.3
Q ss_pred CCCEEEEEc-CCeEEEEeCCCCc---eeeeccccCCc--eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 18 DVKRLLVCT-SNTVSIFSTSTGL---QISSLEGHTAP--VTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 18 ~~~~l~~~~-~~~v~~~~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
.|+.+++|. ||.+++||.+... .+...+.|... |..+.+.+.|- . -+++++.+|.|++||++.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~--~----elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL--G----ELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC--c----ceeeeccCCeEEEEeccc
Confidence 368888887 9999999987542 34566667766 88999988774 2 355999999999999986
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.83 E-value=0.00013 Score=47.14 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=44.1
Q ss_pred cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 47 HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 47 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
....+.+++++|++. .++.|+.||.+.+||...+.... .+..-....++|+|+|..+
T Consensus 258 L~s~v~~ca~sp~E~-------kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 258 LPSQVICCARSPSED-------KLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred cCCcceEEecCcccc-------eEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 456788999999985 66699999999999987664332 2333477889999999865
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.82 E-value=0.0015 Score=39.82 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=64.7
Q ss_pred eEEcCC-CCEEEEEc--CCeEEEEeCCCCceeeeccccCCceE--EEEEecCCCCccceeEEEEeeec-----CCcEEEE
Q 033738 13 PAFSND-VKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVT--TVIVVPASTPATKILSYCWTASL-----DETIKYW 82 (112)
Q Consensus 13 ~~~~~~-~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~ 82 (112)
++.+|+ +..++.+. .....+||..+++....+....+... .-.|+++++ ++++.-. .|.|-+|
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-------~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-------LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-------EEEEeccccCCCcEEEEEE
Confidence 788884 56666665 46788999999987777765555433 447899995 4445433 4789999
Q ss_pred eCC-CCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 83 DFS-TPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|.. ....+..+..+. .--.+.+.|||+.|
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tL 113 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETL 113 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEE
Confidence 998 456667776655 55567788988654
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=4.1e-05 Score=49.68 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=57.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCC-------ceeeeccccCCceEEEEEecCCCCccceeEEEEee
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-------LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTA 73 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
+.||++.|.. ++.-.+.+.+++++ |.+|++|.++.. .+...+..|..++..+.|-.+.+ ++ .
T Consensus 731 f~GH~~~iRa-i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-------~i--~ 800 (1034)
T KOG4190|consen 731 FTGHQEKIRA-IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-------SI--A 800 (1034)
T ss_pred ccCcHHHhHH-HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-------ee--e
Confidence 5789998887 66555667777777 999999998642 23345567889999998877764 33 3
Q ss_pred ecCCcEEEEeCCCCceE
Q 033738 74 SLDETIKYWDFSTPELL 90 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~ 90 (112)
+.|+-+.+||.--|+.+
T Consensus 801 ScD~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGRLL 817 (1034)
T ss_pred eccCcceeecccccchh
Confidence 55889999996555443
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=9.8e-05 Score=49.35 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=69.6
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCc---------------eeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL---------------QISSLEGHTAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
...+ +.|+.+..++++|+ ||.+++..+.+.. .-..+.+|...|..+.|+.... -+.
T Consensus 16 kL~c-~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-------KLT 87 (1189)
T KOG2041|consen 16 KLHC-AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-------KLT 87 (1189)
T ss_pred eEEE-EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-------ccc
Confidence 4456 89999999999999 9999988764321 1135568999999999987663 344
Q ss_pred eeecCCcEEEEeCCCCceEEEEe---cCCCEEEEEEcCCCcEe
Q 033738 72 TASLDETIKYWDFSTPELLKTID---VKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 111 (112)
+...+|.|-+|.+-+|.....+. ..+-|.+++|+.+|..|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE
Confidence 78889999999987775433222 22368888998888754
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.80 E-value=0.0018 Score=38.15 Aligned_cols=91 Identities=14% Similarity=0.041 Sum_probs=53.9
Q ss_pred eEEc-CCCCEEEEEcCCeEEEEeCCCCceeeeccc-----cCCceEEEEEecCCCCccceeEEEEeeecC--------Cc
Q 033738 13 PAFS-NDVKRLLVCTSNTVSIFSTSTGLQISSLEG-----HTAPVTTVIVVPASTPATKILSYCWTASLD--------ET 78 (112)
Q Consensus 13 ~~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d--------~~ 78 (112)
+.+. +++.++++.. +.+.++|..+++....... .....+.+++.++++ ++++.... +.
T Consensus 45 ~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-------ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 45 MAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-------LYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--------EEEEEECCBCTTCGGSEE
T ss_pred EEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-------EEEEecCCCccccccccc
Confidence 5666 5555444444 4445558887753322221 234567899999995 44454432 45
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
+..++.. ++.......-...+.++|+|+++.+|
T Consensus 117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred eEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence 6667766 55544444444778999999998764
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.77 E-value=0.0012 Score=39.42 Aligned_cols=92 Identities=13% Similarity=-0.061 Sum_probs=62.7
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-Cceeeec--cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GLQISSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
+.. +.+++|++++++.+ ...|..|.++. ++.+... ......-.+..|+.... .++.+..||.+.+||+
T Consensus 161 ~ns-~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-------~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 161 QNS-LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-------QFAVVFQDGTCAIYDV 232 (344)
T ss_pred eee-eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-------eEEEEecCCcEEEEEe
Confidence 454 88999999999888 48899998865 3333222 22233346778888773 7889999999999999
Q ss_pred CCCceE-E----EEecCC-CEEEEEEcCCC
Q 033738 85 STPELL-K----TIDVKF-PIFSMVRGKKG 108 (112)
Q Consensus 85 ~~~~~~-~----~~~~~~-~v~~~~~~~~~ 108 (112)
+.-... . +-+.|. .++.+.|++-|
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCC
Confidence 863221 1 112233 78888888754
No 289
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.74 E-value=0.00053 Score=48.23 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeee-cCCcEEEE
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTAS-LDETIKYW 82 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~ 82 (112)
.+.|+. ++.+|.+++++.|+ .|.+-+||++-+..+..+. ++..++..+..+|-.++.+.. +.++. ..+.+.+|
T Consensus 1195 hG~vTS-i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~---vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTS-IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS---VSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccceeE-EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE---EEecccCCCceeee
Confidence 467776 99999999999998 7999999999887776654 345667777777654311212 22333 57889999
Q ss_pred eCCCCceEEEEec
Q 033738 83 DFSTPELLKTIDV 95 (112)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (112)
++.+|.+-.++-.
T Consensus 1271 n~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWA 1283 (1431)
T ss_pred ecccCcceEEEEc
Confidence 9999977666543
No 290
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.70 E-value=0.00034 Score=43.46 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=54.5
Q ss_pred cCCCCEEEEEc----------CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 16 SNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 16 ~~~~~~l~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
|||++.++... .+...++|+++++ ...+......+....|+|++. .++.. .++.|++.+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~-~~~l~~~~~~~~~~~~sP~g~-------~~~~v-~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE-ITPLTPPPPKLQDAKWSPDGK-------YIAFV-RDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE-EEESS-EETTBSEEEE-SSST-------EEEEE-ETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc-eEECcCCccccccceeecCCC-------eeEEE-ecCceEEEECC
Confidence 68888877643 2678999999875 444443356678899999995 22222 45789999987
Q ss_pred CCceEEEEecC------------------CCEEEEEEcCCCcEe
Q 033738 86 TPELLKTIDVK------------------FPIFSMVRGKKGFAV 111 (112)
Q Consensus 86 ~~~~~~~~~~~------------------~~v~~~~~~~~~~~~ 111 (112)
++...+..... ..-..+-|+|||++|
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l 115 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL 115 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEE
Confidence 77444332211 123567899999876
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.70 E-value=0.0011 Score=42.70 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=64.0
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC---Cc
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---ET 78 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---~~ 78 (112)
-.+.|.. .+|.|+++.+++.+ +..+.++|++.. ....+. +..-..+-|+|.++ +++.++.| |.
T Consensus 273 ~~~pVhd-f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r-------~il~agF~nl~gn 341 (561)
T COG5354 273 LKDPVHD-FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHER-------YILFAGFDNLQGN 341 (561)
T ss_pred cccccee-eeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCccc-------EEEEecCCccccc
Confidence 3677887 99999998877664 578889998744 333333 22235677899985 55565554 78
Q ss_pred EEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+-+||.................-+.|+|+|+++
T Consensus 342 i~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~ 374 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFY 374 (561)
T ss_pred eEEeccCCceEEEEEeecCCceEeeccCCceEE
Confidence 999998755443322223355567899999875
No 292
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.69 E-value=6.2e-05 Score=46.06 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=71.7
Q ss_pred cCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc---eeeeccccC-----CceEEEEEecCCCCccceeEEEEeee
Q 033738 3 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL---QISSLEGHT-----APVTTVIVVPASTPATKILSYCWTAS 74 (112)
Q Consensus 3 ~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~ 74 (112)
.+|+-.+.. +.++.|.+.++++.|-.|-+|.++-.. .+.-++++. --+++..|+|... ..++-.+
T Consensus 161 NaHtyhiNS-IS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c------n~f~YSS 233 (433)
T KOG1354|consen 161 NAHTYHINS-ISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC------NVFVYSS 233 (433)
T ss_pred ccceeEeee-eeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc------cEEEEec
Confidence 357778887 999999999999999999999986422 122333332 2357788999764 3666788
Q ss_pred cCCcEEEEeCCCCc-eE---EEEec-------------CCCEEEEEEcCCCcEeC
Q 033738 75 LDETIKYWDFSTPE-LL---KTIDV-------------KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 75 ~d~~i~~~~~~~~~-~~---~~~~~-------------~~~v~~~~~~~~~~~~~ 112 (112)
..|+|++.|++... |- ..+.. -+.|..+.|+++|++++
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil 288 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL 288 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE
Confidence 89999999998421 11 11111 12578899999999873
No 293
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.68 E-value=0.0016 Score=46.10 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=51.8
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc-------------ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-------------GHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
++++++|+.+++-. ++.|++||..++....... ..-.....+++++++. ++++.+.++.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-------lyVaDt~Nn~ 881 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-------LFVADTNNSL 881 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-------EEEEECCCCE
Confidence 78899998777766 8999999998765332111 1112456889999985 6668888999
Q ss_pred EEEEeCCCCce
Q 033738 79 IKYWDFSTPEL 89 (112)
Q Consensus 79 i~~~~~~~~~~ 89 (112)
|++||+.++..
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988764
No 294
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.67 E-value=0.0011 Score=44.07 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=49.8
Q ss_pred cCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCce------------eeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738 9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ------------ISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS 74 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 74 (112)
... +.++|||++++.++ +.++.++|+++.+. ..+.....++ ...+|.+++. .+.+-.
T Consensus 323 PHG-V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~-------aytslf 393 (635)
T PRK02888 323 PHG-VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGN-------AYTTLF 393 (635)
T ss_pred ccc-eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCC-------EEEeEe
Confidence 345 89999999998887 79999999987542 2333333333 4568888874 455777
Q ss_pred cCCcEEEEeCCC
Q 033738 75 LDETIKYWDFST 86 (112)
Q Consensus 75 ~d~~i~~~~~~~ 86 (112)
-|..+-.||+.+
T Consensus 394 ~dsqv~kwn~~~ 405 (635)
T PRK02888 394 LDSQIVKWNIEA 405 (635)
T ss_pred ecceeEEEehHH
Confidence 789999999875
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00084 Score=45.42 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=70.0
Q ss_pred ccCCCCCcCCCeEEcCCC-----------CEE-EEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeE
Q 033738 2 IRGGRSYVSSPPAFSNDV-----------KRL-LVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILS 68 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~-----------~~l-~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 68 (112)
++-|...|+. ++|.|.. +.+ +++. .|.|.+||...+..+..+..+..++..++|-+..+-.+.
T Consensus 51 ie~h~s~V~~-VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd--- 126 (1062)
T KOG1912|consen 51 IELHQSAVTS-VRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD--- 126 (1062)
T ss_pred cccCccceeE-EEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh---
Confidence 4557888887 9998742 233 3344 599999999888777778878888898888765431122
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcC
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGK 106 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 106 (112)
.++.......+.+|+..+|+......... ...++.+.|
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence 23455667799999999998876665544 555566665
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.00015 Score=44.43 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=57.1
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce----eeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.|.+ +.|...++++..|. +|.|..+|++.... .....-|...|+++..-. ++. ++.+.+-+|.|+
T Consensus 253 sDVfA-lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q-------~LmaS~M~gkik 324 (425)
T KOG2695|consen 253 SDVFA-LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ-------KLMASDMTGKIK 324 (425)
T ss_pred hhHHH-HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc-------eEeeccCcCcee
Confidence 35565 77777788888888 89999999986521 112223777788776544 442 566888999999
Q ss_pred EEeCCCCce---EEEEecC
Q 033738 81 YWDFSTPEL---LKTIDVK 96 (112)
Q Consensus 81 ~~~~~~~~~---~~~~~~~ 96 (112)
+||.+--++ +.+..+|
T Consensus 325 LyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred Eeeehhhhcccceeeeecc
Confidence 999886554 6666555
No 297
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=6.9e-05 Score=50.90 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=57.7
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
+.+ ++|+|..-.|+.+. .|.+.+|..++.+.-.....|..++..+.||++|. .++++..-|.+.+|.+.
T Consensus 62 atS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~-------~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT-------VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhh-hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC-------eEEEcCCCceeEEEEee
Confidence 344 89999888888887 69999999887765566667999999999999995 66699999999999765
No 298
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.59 E-value=0.0035 Score=39.98 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=59.8
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceE-EEEEecCCC------------CccceeEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVT-TVIVVPAST------------PATKILSY 69 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~------------~~~~~~~~ 69 (112)
+....+.. +..+|++++.++.. -|.|.++|+.++..++.+++....-. -+....... +...++ +
T Consensus 305 D~~R~~~~-i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~-L 382 (415)
T PF14655_consen 305 DSKREGES-ICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF-L 382 (415)
T ss_pred cCCceEEE-EEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE-E
Confidence 33445565 89999988777765 49999999999988888887654321 111111111 011233 5
Q ss_pred EEeeecCCcEEEEeCCCCceEEEEec
Q 033738 70 CWTASLDETIKYWDFSTPELLKTIDV 95 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~~~~~~~~~~~~ 95 (112)
++-+..-|.+.+|+++.|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 55677789999999999988777654
No 299
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0059 Score=37.49 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=60.7
Q ss_pred CcCCCeEEcCCCCEEEEEc--CCeEEEEeCCC--Cc---e--eeeccccCCceEEEEEecCCCCccceeEEEEeeecCC-
Q 033738 8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTST--GL---Q--ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDE- 77 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~--~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~- 77 (112)
.-+. ++||||++.++.+. .+.+.-+++.. +. . ...+....+..-.++...++. +.+++..++
T Consensus 164 ~~NG-la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-------lw~~a~~~g~ 235 (307)
T COG3386 164 IPNG-LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-------LWVAAVWGGG 235 (307)
T ss_pred ecCc-eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-------EEEecccCCc
Confidence 3455 99999999888875 48888887752 21 1 111112233334566666774 443444443
Q ss_pred cEEEEeCCCCceEEEEecC-CCEEEEEEc-CCCcEe
Q 033738 78 TIKYWDFSTPELLKTIDVK-FPIFSMVRG-KKGFAV 111 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~~~ 111 (112)
.|..|+.. |+.+..+..+ ..+.+++|- |+.+.|
T Consensus 236 ~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 236 RVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred eEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 89999988 9999888888 477777774 344444
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.53 E-value=0.0058 Score=36.68 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=55.2
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc-------CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH-------TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
++||||+..|+.+. .|+|+++|+... .+..+... ...|..+.|-+......... -++....+|.++-+-+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLV 126 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEE
Confidence 78999999999997 799999998743 33333321 23444555543321111111 2334555666665543
Q ss_pred CC-----CceEEEEe--c--CCCEEEEEEcCCCcEe
Q 033738 85 ST-----PELLKTID--V--KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 85 ~~-----~~~~~~~~--~--~~~v~~~~~~~~~~~~ 111 (112)
.. ......+. . +..+.++.++|.-+.+
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 21 22222322 2 2378899999887655
No 301
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00088 Score=43.63 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCcCCCeEEcCCCCEEEEEc----CCeEEEEeCCC-Cce---eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 7 SYVSSPPAFSNDVKRLLVCT----SNTVSIFSTST-GLQ---ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~----~~~v~~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+.|.. .+|-|.|+.++.-+ ..++.+|..++ ... +..+.. ...+.+.|+|.|. .++ ..+-.+..|.
T Consensus 446 e~vi~-FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~---fvv-va~l~s~~g~ 518 (698)
T KOG2314|consen 446 ESVIA-FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR---FVV-VAALVSRRGD 518 (698)
T ss_pred hheee-eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc---EEE-EEEecccccc
Confidence 45666 89999998887654 27888988763 322 223322 3356889999994 333 3344456789
Q ss_pred EEEEeCCCCceEEEE-ecCCCEEEEEEcCCCcEe
Q 033738 79 IKYWDFSTPELLKTI-DVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 79 i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 111 (112)
+.++|.....+..+- ..|...+.+.|.|.|+|+
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEE
Confidence 999998754443332 234477889999999886
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.00021 Score=49.00 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=60.9
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC-CcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD-ETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~i 79 (112)
|..|....++ ++|+.+.++|+.|+ .|.|++++..+|........|+..++.+.=+.++. . .+.+.++. ...
T Consensus 1097 frd~~~~fTc-~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs---~---~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1097 FRDETALFTC-IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS---T---QLTSSSSSSPLS 1169 (1516)
T ss_pred hhccccceee-EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc---e---eeeeccccCchH
Confidence 4556777777 99999999999999 89999999999988888899999999998888884 1 22233333 356
Q ss_pred EEEeCCC
Q 033738 80 KYWDFST 86 (112)
Q Consensus 80 ~~~~~~~ 86 (112)
.+|+..+
T Consensus 1170 aLW~~~s 1176 (1516)
T KOG1832|consen 1170 ALWDASS 1176 (1516)
T ss_pred HHhcccc
Confidence 6887653
No 303
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.00086 Score=44.57 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=62.7
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
-+++..+++++.|+ -|.+++|+-..+. ...++ +..+.+..+..++... +.+.++..+.|.++.+..+.+
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~-------lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEY-------LVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhH-------hhhhhcCCceEEeehhhccCC
Confidence 45677789999998 6999999866554 33333 2344455666777763 566788889999998765432
Q ss_pred E---EE--Eec--CCCEEEEEEcCCCcEeC
Q 033738 90 L---KT--IDV--KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 90 ~---~~--~~~--~~~v~~~~~~~~~~~~~ 112 (112)
. .. ... ...|+++.|++++..+|
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y 140 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLY 140 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEe
Confidence 1 11 111 23899999999998876
No 304
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.47 E-value=0.001 Score=29.13 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=27.9
Q ss_pred CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 49 APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
..|..++|+|..+ +++.+..+|.+.++++ +++.
T Consensus 12 ~~v~~~~w~P~md-------LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-------LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-------EEEEEECCCeEEEEEC-CCcC
Confidence 4588999999996 8889999999999998 4543
No 305
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.45 E-value=0.0052 Score=38.99 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=55.8
Q ss_pred eEEcCCCCEEEEE-c-C----CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee-c---------C
Q 033738 13 PAFSNDVKRLLVC-T-S----NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS-L---------D 76 (112)
Q Consensus 13 ~~~~~~~~~l~~~-~-~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~---------d 76 (112)
..++|||++++.+ + . ..++++|+++++.+........ ...+.|.+++. .++.+.. . .
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~------~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGK------GFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSS------EEEEEECSTTTSS-CCGCC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCC------EEEEEEeCcccccccCCCC
Confidence 6789999998865 2 2 4699999999876542211111 12389999975 2223332 2 3
Q ss_pred CcEEEEeCCCCce--EEEEecCC--C-EEEEEEcCCCcEeC
Q 033738 77 ETIKYWDFSTPEL--LKTIDVKF--P-IFSMVRGKKGFAVF 112 (112)
Q Consensus 77 ~~i~~~~~~~~~~--~~~~~~~~--~-v~~~~~~~~~~~~~ 112 (112)
..++.|.+.++.. ...+.... . ...+..++++++++
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF 242 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence 3477888776533 23443332 3 66788899998764
No 306
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.0034 Score=41.83 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=52.5
Q ss_pred CcCCCeEEcCCCCEEEEEc-------C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEe------
Q 033738 8 YVSSPPAFSNDVKRLLVCT-------S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWT------ 72 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-------~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 72 (112)
.+.. .+++|||+.++... | ..+.+++.. +. ...+.... ....-.|+|++. .+ +++.
T Consensus 351 ~vss-paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~-~~~lt~g~-~~t~PsWspDG~---~l--w~v~dg~~~~ 421 (591)
T PRK13616 351 NITS-AALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GV-AVQVLEGH-SLTRPSWSLDAD---AV--WVVVDGNTVV 421 (591)
T ss_pred Cccc-ceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cc-ceeeecCC-CCCCceECCCCC---ce--EEEecCcceE
Confidence 4555 89999998876443 2 355555542 22 23332222 356778999964 11 1111
Q ss_pred ----eecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 73 ----ASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 73 ----~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
....+.+.+.++..++... .....+..+.|+|||..+
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~Ri 462 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRA 462 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEE
Confidence 1123445544555444322 233479999999999865
No 307
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.37 E-value=0.0037 Score=42.84 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=58.0
Q ss_pred CEEEEEcCCeEEEEeCCCCc-eeee--cc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738 20 KRLLVCTSNTVSIFSTSTGL-QISS--LE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94 (112)
Q Consensus 20 ~~l~~~~~~~v~~~~~~~~~-~~~~--~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 94 (112)
+.++.-+++.+..||.+-.. .+.. .. .......|++-+.+| +++.|+.+|.||+||-...+.-..++
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G--------~iavgs~~G~IRLyd~~g~~AKT~lp 615 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG--------YIAVGSNKGDIRLYDRLGKRAKTALP 615 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc--------eEEEEeCCCcEEeecccchhhhhcCC
Confidence 44555567889999987532 2211 11 123456788877777 78899999999999954333334444
Q ss_pred c-CCCEEEEEEcCCCcEeC
Q 033738 95 V-KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 95 ~-~~~v~~~~~~~~~~~~~ 112 (112)
. +.+|..+..+.||++++
T Consensus 616 ~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 616 GLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred CCCCCeeEEEecCCCcEEE
Confidence 3 44999999999999873
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.34 E-value=0.0096 Score=35.80 Aligned_cols=67 Identities=21% Similarity=0.151 Sum_probs=47.4
Q ss_pred eEEcCCCCEEEEEcCCeEEEEeCCCC--ceeeeccc---cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCTSNTVSIFSTSTG--LQISSLEG---HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~~v~~~~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
++.+.||+.|+...|..|.+-..+.. ..+..... ..-.-+.++||||+. +++.+...|.|+++|+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-------lLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-------LLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-------EEEEEcCCCeEEEEeccc
Confidence 56788999999888888877765432 12222221 122346899999994 778899999999999873
No 309
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.0092 Score=36.26 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=62.2
Q ss_pred EEcCCCCEEEEEc-C-----CeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeee---c--------
Q 033738 14 AFSNDVKRLLVCT-S-----NTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS---L-------- 75 (112)
Q Consensus 14 ~~~~~~~~l~~~~-~-----~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~-------- 75 (112)
.|||||.+|+..- | |.|-+||.+.+ +.+..+..|.-.-..+.|.+|++ .+ .++.++ .
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGr----tl-vvanGGIethpdfgR~~l 194 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGR----TL-VVANGGIETHPDFGRTEL 194 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCc----EE-EEeCCceecccccCcccc
Confidence 6899999998764 3 78999998753 45677777776677889999996 11 122221 1
Q ss_pred -----CCcEEEEeCCCCceEEEEecC----C-CEEEEEEcCCCcEeC
Q 033738 76 -----DETIKYWDFSTPELLKTIDVK----F-PIFSMVRGKKGFAVF 112 (112)
Q Consensus 76 -----d~~i~~~~~~~~~~~~~~~~~----~-~v~~~~~~~~~~~~~ 112 (112)
...+.+.|..+|+.+.+...+ . .+.-++..+||..+|
T Consensus 195 NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 195 NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 124555666667666554433 2 677788888887653
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.00068 Score=46.45 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=64.0
Q ss_pred cCCCeEEcCCCCEEEEEc-----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 9 VSSPPAFSNDVKRLLVCT-----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
+..-.+|+|...+++.++ .|+|-+|- ++|++-+... ..-.+.+++|+|..- .++.+-.-|.+.+|.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~-------vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEF-------VLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHH-------HHhhccccceeEEEe
Confidence 333367999999888775 37888873 5565433222 112245789999872 556777789999998
Q ss_pred CCCCceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 84 FSTPELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 84 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
..+.+--.....|. ++..+.|+++|..+
T Consensus 88 ~~~~e~htv~~th~a~i~~l~wS~~G~~l 116 (1416)
T KOG3617|consen 88 TNTTETHTVVETHPAPIQGLDWSHDGTVL 116 (1416)
T ss_pred cCCceeeeeccCCCCCceeEEecCCCCeE
Confidence 77655444444444 99999999999865
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.26 E-value=0.00053 Score=46.97 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=51.5
Q ss_pred cCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec---------CCcEEEEeCC
Q 033738 16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL---------DETIKYWDFS 85 (112)
Q Consensus 16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~~~~~~ 85 (112)
..+++.+.+|. .|+|.+-|.++.+.++.+..|.+.+..+.. .|+ .++++|. |..+++||++
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN-------lLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN-------LLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCC-------eEEEeecccccccccccchhhhhhhh
Confidence 34567777787 799999999999999999999998877665 453 4557664 5678999988
Q ss_pred CCceEEE
Q 033738 86 TPELLKT 92 (112)
Q Consensus 86 ~~~~~~~ 92 (112)
..+.+..
T Consensus 255 mmral~P 261 (1118)
T KOG1275|consen 255 MMRALSP 261 (1118)
T ss_pred hhhccCC
Confidence 6554433
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.25 E-value=0.0024 Score=41.18 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=65.4
Q ss_pred CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecC----------
Q 033738 7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLD---------- 76 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d---------- 76 (112)
..+.. .++||.|.+|++..-..|.+|+-.....+..+. ...|..+.|+|.+. |+.+-...
T Consensus 33 ~p~~~-~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~k-------YL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 33 WPVAY-VSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEK-------YLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cchhh-eeecCcchheehhhccceEEccccchhheeeee--cCCceecccCcccc-------eeeeeccCCccChhhccC
Confidence 34555 889999999988877778999877665444443 24578899999985 66665443
Q ss_pred -----CcEEEEeCCCCceEEEEecCC-C--EE-EEEEcCCCc
Q 033738 77 -----ETIKYWDFSTPELLKTIDVKF-P--IF-SMVRGKKGF 109 (112)
Q Consensus 77 -----~~i~~~~~~~~~~~~~~~~~~-~--v~-~~~~~~~~~ 109 (112)
..+.+||+.+|..+..+.... + .+ -+.|+-+.+
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK 144 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecch
Confidence 248999999999888877644 2 33 355554443
No 313
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.24 E-value=0.0014 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.5
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS 36 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~ 36 (112)
..|.. ++|+|...+++.++ +|.|.++.++
T Consensus 12 ~~v~~-~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSC-MSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEE-EEECCCCCEEEEEECCCeEEEEECC
Confidence 45776 99999999999998 8999999983
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.20 E-value=0.013 Score=39.20 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=58.9
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee----------------
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS---------------- 74 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------------- 74 (112)
+-++|||+.+...+ .+.+.++|.++.+...++.... ....++++|++. ++.+.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk-------~afvTsyNsE~G~tl~em~a~e 269 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGK-------YAFSTCYNSEEGVTLAEMMAAE 269 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCC-------EEEEeccCcccCcceeeecccc
Confidence 34567887765445 4788888988776555554322 224556666663 221221
Q ss_pred ------------------------cCCcEEEEeCCC-----CceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 75 ------------------------LDETIKYWDFST-----PELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 75 ------------------------~d~~i~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
.++.+.+.|.++ ...+..+..+.....+.++|||+++|
T Consensus 270 ~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkyly 336 (635)
T PRK02888 270 RDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFI 336 (635)
T ss_pred CceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEE
Confidence 124577888776 35566677777888899999999875
No 315
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.17 E-value=0.00039 Score=43.11 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=32.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecc
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE 45 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~ 45 (112)
.-||+..|.. ++.-++. .|++++ |+++++||+.+++.+..+.
T Consensus 190 clGH~eFVS~-isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKEFVST-ISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHhheee-eeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 3589999997 8887654 466776 9999999999998765553
No 316
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.17 E-value=0.0058 Score=37.87 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCC-CceeeeccccC------------Cc---eEEEEEecCCCCccceeEEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-GLQISSLEGHT------------AP---VTTVIVVPASTPATKILSYC 70 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~------------~~---v~~~~~~~~~~~~~~~~~~~ 70 (112)
..|.+ +.|+++|+++++-+--+|++||+.. .+++..++.|. .. -.-++|+-++. ++
T Consensus 273 sSISD-vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-------~v 344 (433)
T KOG1354|consen 273 SSISD-VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-------YV 344 (433)
T ss_pred hhhhc-eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-------eE
Confidence 45677 9999999999988889999999854 33333333221 11 24567887773 77
Q ss_pred EeeecCCcEEEEeCCCC
Q 033738 71 WTASLDETIKYWDFSTP 87 (112)
Q Consensus 71 ~~~~~d~~i~~~~~~~~ 87 (112)
.+|+....+++++...|
T Consensus 345 ~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 345 MTGSYNNVFRVFNLARG 361 (433)
T ss_pred ecccccceEEEecCCCC
Confidence 89999999999996544
No 317
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.08 E-value=0.00048 Score=40.87 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=49.2
Q ss_pred EcCCCCEEEEEcC------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738 15 FSNDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE 88 (112)
Q Consensus 15 ~~~~~~~l~~~~~------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 88 (112)
....++.+.++.- +..+.|+++..+...........|.+++-+|... + ++.+|+.||.+-+||.+...
T Consensus 140 ~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq---~---~v~cgt~dg~~~l~d~rn~~ 213 (319)
T KOG4714|consen 140 ICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ---H---LVCCGTDDGIVGLWDARNVA 213 (319)
T ss_pred eeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc---c---EEEEecCCCeEEEEEccccc
Confidence 3344555555542 3445555543322211112233488888888764 2 44588899999999998753
Q ss_pred eE-EEEecCC-CEEEEEEcCC
Q 033738 89 LL-KTIDVKF-PIFSMVRGKK 107 (112)
Q Consensus 89 ~~-~~~~~~~-~v~~~~~~~~ 107 (112)
.. ..+..|. +++.+.|+|.
T Consensus 214 ~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 214 MPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred chHHHHHHhhhhhhheeccCC
Confidence 22 2233333 6777777763
No 318
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.06 E-value=0.00085 Score=45.23 Aligned_cols=91 Identities=24% Similarity=0.363 Sum_probs=62.1
Q ss_pred eEEcCC-CCEEEEEcCCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC--c
Q 033738 13 PAFSND-VKRLLVCTSNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP--E 88 (112)
Q Consensus 13 ~~~~~~-~~~l~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~ 88 (112)
++|+.. ++.+++.....+++||++.+ .++..+++|...+..++|..... +.+.+++.|++++.||..+. +
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~------s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY------SEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh------hhhcccCCCCceeeecccccccc
Confidence 777764 44444444788999999875 45567778888888888865543 24568999999999998754 2
Q ss_pred eEEEEecCCCEEEEEEcCCCc
Q 033738 89 LLKTIDVKFPIFSMVRGKKGF 109 (112)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~~~ 109 (112)
...+.....+++-.++.|-|+
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cceeccccCcceeccccccCc
Confidence 333334444676667776554
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0018 Score=40.65 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=56.3
Q ss_pred EEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCc
Q 033738 30 VSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGF 109 (112)
Q Consensus 30 v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 109 (112)
+++.+..+.+....+..+...|..++++|..+ -++..++.+..|++.|+++..++..+..+..+++.+|.-+..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~------GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNE------GLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCcccc------ceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCc
Confidence 44545444444445556677788999999874 245678889999999999998888888888999999987653
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.04 E-value=0.017 Score=34.79 Aligned_cols=72 Identities=13% Similarity=-0.054 Sum_probs=49.6
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
|++++.|. .+.+++.+.++|....++..-+.--......+++. .+..++.|+..+..|.++..++...+-+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g-------lIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG-------LIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc-------eEEEecCCCcEEEecccccceEEecccCC
Confidence 45566666 78888888888876666654322112334456664 66789999999999999888877665443
No 321
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0043 Score=43.50 Aligned_cols=50 Identities=30% Similarity=0.391 Sum_probs=41.3
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEE
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIV 56 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 56 (112)
+++|.+ ++|+.+|..++.|- +|.|.+||...++.++.+..++.+...+-+
T Consensus 130 ~~~Vts-vafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 130 QGPVTS-VAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred CCccee-eEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 457776 99999999999886 899999999998888888877776665533
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.04 Score=34.94 Aligned_cols=93 Identities=25% Similarity=0.253 Sum_probs=64.1
Q ss_pred eEEcCCCCEEEEEc----CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738 13 PAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 88 (112)
++++|+++.++.+. ++.+.+.|..+.+.+........+ ..++++|++. ..+++...++.+.+.|.....
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~------~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGN------KVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCC------eEEEEecCCCeEEEEeCCCcc
Confidence 88999998877664 378889898888776665444444 7889999995 234455678899999976554
Q ss_pred eEE-----EEecCCCEEEEEEcCCCcEeC
Q 033738 89 LLK-----TIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 89 ~~~-----~~~~~~~v~~~~~~~~~~~~~ 112 (112)
... .......-..+.+.|+|+.+|
T Consensus 194 v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 194 VVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred eeccccccccccCCCCceEEECCCCCEEE
Confidence 442 122223445678888888654
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.013 Score=39.92 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=56.3
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
++.++.|+ +|.+++.+.+ +.. .....|... ..+|. ++++|+.||.+.+-.+-+.+...+...+.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Ge-------y~asCS~DGkv~I~sl~~~~~~~~~df~r 113 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGE-------YVASCSDDGKVVIGSLFTDDEITQYDFKR 113 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCc-------eEEEecCCCcEEEeeccCCccceeEecCC
Confidence 57788888 8999998876 333 222223221 44564 88999999999999988888888888888
Q ss_pred CEEEEEEcCC
Q 033738 98 PIFSMVRGKK 107 (112)
Q Consensus 98 ~v~~~~~~~~ 107 (112)
++.+++++|+
T Consensus 114 piksial~Pd 123 (846)
T KOG2066|consen 114 PIKSIALHPD 123 (846)
T ss_pred cceeEEeccc
Confidence 9999999998
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.017 Score=39.43 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCC-CCccceeEEEEeeecCCcEEEEeCC---CCceEEE
Q 033738 18 DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS-TPATKILSYCWTASLDETIKYWDFS---TPELLKT 92 (112)
Q Consensus 18 ~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~---~~~~~~~ 92 (112)
+|.++++++ ||++.+..+-+.+...++. ...++..++++|+- .++++ .+++||..| +.++.-. ....+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk---~fv~GG~ag-lvL~er~wlgnk~~v~l 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK---QFVSGGMAG-LVLSERNWLGNKDSVVL 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh---heeecCcce-EEEehhhhhcCccceee
Confidence 589999999 8999998887776555554 34677899999982 11111 345888877 7666432 1122212
Q ss_pred EecCCCEEEEEEc
Q 033738 93 IDVKFPIFSMVRG 105 (112)
Q Consensus 93 ~~~~~~v~~~~~~ 105 (112)
.....+|.++.|.
T Consensus 157 ~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR 169 (846)
T ss_pred ecCccceEEEEec
Confidence 2233477777775
No 325
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0044 Score=40.99 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=39.6
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-cccCCceEEEEEec
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVP 58 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 58 (112)
|...+..+++|.|||+.++.|- ||+|++.|..++..+..+ ......+.++-|++
T Consensus 60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 4445553399999999999997 999999999988766552 22345566666653
No 326
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.80 E-value=0.033 Score=39.34 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=54.9
Q ss_pred CeEEcCCCCEEEEEc---C-CeEEEEeCCCCceeeec----cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 12 PPAFSNDVKRLLVCT---S-NTVSIFSTSTGLQISSL----EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 12 ~~~~~~~~~~l~~~~---~-~~v~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
+++|.|.|+++++.. + ..|.+|.-+ |-.-..| ......|..++|++++. +++....| .|.+|-
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-------iLAv~~~~-~vqLWt 331 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSE-------ILAVWLED-RVQLWT 331 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCC-------EEEEEecC-CceEEE
Confidence 489999999999875 2 566666633 4222222 23456789999999985 44444444 499998
Q ss_pred CCCCceE--EEEec--CCCEEEEEEcCCC
Q 033738 84 FSTPELL--KTIDV--KFPIFSMVRGKKG 108 (112)
Q Consensus 84 ~~~~~~~--~~~~~--~~~v~~~~~~~~~ 108 (112)
..+...- +.+.. ...+..+.|+|..
T Consensus 332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred eeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 7765432 22222 2244457788754
No 327
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.78 E-value=0.041 Score=34.59 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCC-ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTA-PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK 96 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 96 (112)
+..++.++ ++.+..+|..+++.+........ ....... .+. .++.++.+|.++++|..+|+.+..++.+
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~-------~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGG-------YLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECC-------EEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 34444444 56666666666654433321111 1111111 121 4557788999999999999988777654
Q ss_pred C
Q 033738 97 F 97 (112)
Q Consensus 97 ~ 97 (112)
.
T Consensus 350 ~ 350 (377)
T TIGR03300 350 G 350 (377)
T ss_pred C
Confidence 3
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.73 E-value=0.072 Score=34.59 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=24.8
Q ss_pred cCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 75 LDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 75 ~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.++.+.+||..+++.+..+... +|..+.|+++|+++
T Consensus 124 ~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~v 159 (443)
T PF04053_consen 124 SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELV 159 (443)
T ss_dssp ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEE
T ss_pred CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEE
Confidence 3457999999999998888754 48999999999875
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.68 E-value=0.053 Score=34.41 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=44.6
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccC-CceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHT-APVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
|..+... -+|.+||+.|+.++ + ..+...|+.+++ +.+++... .......++|+.+ .++ -.-....+
T Consensus 34 h~~YF~~-~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-i~QLTdg~g~~~~g~~~s~~~~---~~~----Yv~~~~~l 104 (386)
T PF14583_consen 34 HRLYFYQ-NCFTDDGRKLLFASDFDGNRNLYLLDLATGE-ITQLTDGPGDNTFGGFLSPDDR---ALY----YVKNGRSL 104 (386)
T ss_dssp E---TTS---B-TTS-EEEEEE-TTSS-EEEEEETTT-E-EEE---SS-B-TTT-EE-TTSS---EEE----EEETTTEE
T ss_pred cceeecC-CCcCCCCCEEEEEeccCCCcceEEEEcccCE-EEECccCCCCCccceEEecCCC---eEE----EEECCCeE
Confidence 4456666 78999998777665 3 578888999886 55555432 2222455677774 222 23344678
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEE
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVR 104 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~ 104 (112)
+-.|+++++.......+. .+....|
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWKGYGTW 130 (386)
T ss_dssp EEEETTT--EEEEEE--TTEEEEEEE
T ss_pred EEEECCcCcEEEEEECCcccccccce
Confidence 888999887655555544 4433444
No 330
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.67 E-value=0.0025 Score=39.01 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=68.2
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc---eeeeccccC-----CceEEEEEecCCCCccceeEEEEeeec
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL---QISSLEGHT-----APVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
.|.-.+.. +.+..|.+.++++.|-.|.+|++.... .+.-++++. .-+++..|+|... ..+.-.+.
T Consensus 170 aH~yhiNS-iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c------n~fmYSsS 242 (460)
T COG5170 170 AHPYHINS-ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC------NVFMYSSS 242 (460)
T ss_pred cceeEeee-eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc------ceEEEecC
Confidence 46667776 999999999999999999999986431 233333332 2356778888764 24556777
Q ss_pred CCcEEEEeCCCCc-e-----EE--EEec---------CCCEEEEEEcCCCcEe
Q 033738 76 DETIKYWDFSTPE-L-----LK--TIDV---------KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 76 d~~i~~~~~~~~~-~-----~~--~~~~---------~~~v~~~~~~~~~~~~ 111 (112)
.|.|++-|++... | +. ++.+ -+.+..+.|+++|++|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryI 295 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYI 295 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEE
Confidence 8999999988421 1 11 1110 1257888999999876
No 331
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.0092 Score=41.98 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=49.8
Q ss_pred CEEEEEc-CCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 20 KRLLVCT-SNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
..++.++ .|.+-..|.... .+...=..-+++|++++++.++. .+..|-.+|.|.+||...++.++.+..+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-------~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-------LLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-------eeccccCCCcEEEEEccCCcceeeeeecC
Confidence 3455665 477777776532 11122223467899999999994 66688889999999999988887776544
No 332
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.52 E-value=0.016 Score=43.24 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=55.1
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
-..|.+ +.-+|...+.++|+ ||.+++|....++.+..++. ....|+.+.|+..|. -+..+..||.+.+|.
T Consensus 2208 v~~v~r-~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-------k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2208 VENVRR-MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-------KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred cCceee-ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-------ceeeeccCCceeecc
Confidence 344554 55567778888998 99999999888777766652 347788999998884 455778899999998
Q ss_pred CC
Q 033738 84 FS 85 (112)
Q Consensus 84 ~~ 85 (112)
..
T Consensus 2280 ~~ 2281 (2439)
T KOG1064|consen 2280 AS 2281 (2439)
T ss_pred cC
Confidence 76
No 333
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.50 E-value=0.087 Score=35.48 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=50.2
Q ss_pred cCCCeEEcCCCCEEEEEcCC-------------eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738 9 VSSPPAFSNDVKRLLVCTSN-------------TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
... ..|+|||+.+.+..++ .+.+.+++.+.. .. ...+.|..++||||+. +++ +++
T Consensus 399 ~t~-PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~--~~~g~Issl~wSpDG~---RiA-~i~---- 466 (591)
T PRK13616 399 LTR-PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS--RVPGPISELQLSRDGV---RAA-MII---- 466 (591)
T ss_pred CCC-ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh--ccCCCcCeEEECCCCC---EEE-EEE----
Confidence 455 8999999877766532 233233332221 11 2245689999999994 343 322
Q ss_pred CCcEEE---EeCCCCce-E---EEEecC-C-CEEEEEEcCCCcEe
Q 033738 76 DETIKY---WDFSTPEL-L---KTIDVK-F-PIFSMVRGKKGFAV 111 (112)
Q Consensus 76 d~~i~~---~~~~~~~~-~---~~~~~~-~-~v~~~~~~~~~~~~ 111 (112)
++.+++ -....|.. + ..+... . .+.++.|.+++..+
T Consensus 467 ~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~ 511 (591)
T PRK13616 467 GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV 511 (591)
T ss_pred CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE
Confidence 357776 34344531 1 112111 1 35778898887643
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.50 E-value=0.03 Score=39.98 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=57.1
Q ss_pred eEEcCCCCEEEEEc-----C-CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCT-----S-NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-----~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
+.|--||+++++.. + ..+++||-+ |..-..-....+.-.+++|-|.|. ++. .+-.-++|..|.++....
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs---~iA-~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS---LIA-AIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC---eEe-eeeecCCCCcEEEEecCC
Confidence 88999999998742 4 789999976 432111122333346889999883 222 222334566788886431
Q ss_pred ---CceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 87 ---PELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 87 ---~~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|+-...++... .+..++|+.++..+
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCce
Confidence 22222222233 48899999888765
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.48 E-value=0.041 Score=35.65 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCEEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC-----------
Q 033738 19 VKRLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP----------- 87 (112)
Q Consensus 19 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----------- 87 (112)
|..|+..+++.|.+||.++++.++.+... +|..+.|++++. +++-.+ +..+.+++....
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~-------~val~t-~~~i~il~~~~~~~~~~~~~g~e 186 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGE-------LVALVT-KDSIYILKYNLEAVAAIPEEGVE 186 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSS-------EEEEE--S-SEEEEEE-HHHHHHBTTTB-G
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCC-------EEEEEe-CCeEEEEEecchhcccccccCch
Confidence 77777777779999999999888888743 378999999985 444444 447777765422
Q ss_pred ceEEEEec-CCCEEEEEEcCC
Q 033738 88 ELLKTIDV-KFPIFSMVRGKK 107 (112)
Q Consensus 88 ~~~~~~~~-~~~v~~~~~~~~ 107 (112)
........ ...|.+..|..+
T Consensus 187 ~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 187 DAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp GGEEEEEEE-S--SEEEEETT
T ss_pred hceEEEEEecceeEEEEEEcC
Confidence 13334433 446777777654
No 336
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.43 E-value=0.084 Score=31.47 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=57.7
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEe--CCCCce-----eeecc---ccCCce-EEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFS--TSTGLQ-----ISSLE---GHTAPV-TTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~--~~~~~~-----~~~~~---~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
++|+.+.+.++... +-+|.-|| .++|.. +..++ ..+... -.++...++. +++++-+.+++
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-------L~Va~~ng~~V 235 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-------LYVATFNGGTV 235 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-------EEEEEecCcEE
Confidence 88888888777664 67887777 555532 11111 111111 2334444563 56677778899
Q ss_pred EEEeCCCCceEEEEecCC-CEEEEEEc
Q 033738 80 KYWDFSTPELLKTIDVKF-PIFSMVRG 105 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~v~~~~~~ 105 (112)
...|..+|+.+..+..+. .+++++|-
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEec
Confidence 999999999999998877 88888885
No 337
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.011 Score=40.19 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=45.0
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeee-cc-ccCCceEEEEEecCCC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LE-GHTAPVTTVIVVPAST 61 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~ 61 (112)
|.||.+.|.- +.|+.+.+.|.+.. +|-|.+|-+-.+.-... +. .+.+-|.++.|..+|.
T Consensus 67 LeGH~~sV~v-vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~ 128 (1189)
T KOG2041|consen 67 LEGHNASVMV-VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT 128 (1189)
T ss_pred hccCcceEEE-EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc
Confidence 6899999998 99999889998887 89999998876643321 11 2345578999999983
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.42 E-value=0.017 Score=40.16 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-C---------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-S---------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
+..|++.+. +|+-.|+.|++++ . ..|++||++..+.+.-+.-+.++ ..+.|.|.-. +.++
T Consensus 213 ~~aHs~siS---DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~------t~~~ 282 (1118)
T KOG1275|consen 213 FDAHSGSIS---DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT------TRLA 282 (1118)
T ss_pred eecccccee---eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc------ceEE
Confidence 456777775 4666789998876 2 35899999987766655555454 5678888764 3455
Q ss_pred eeecCCcEEEEeCCC-Cce---EEEEec-CCCEEEEEEcCCCcEe
Q 033738 72 TASLDETIKYWDFST-PEL---LKTIDV-KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~-~~~---~~~~~~-~~~v~~~~~~~~~~~~ 111 (112)
.++..|...+-|..+ +++ +..+.. .+.+..+.++++|+.+
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~al 327 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDAL 327 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceE
Confidence 777778888888322 122 222222 2247777888877654
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.38 E-value=0.057 Score=33.69 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=51.0
Q ss_pred eEEcCCCCEEEEEc----C-------CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 13 PAFSNDVKRLLVCT----S-------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 13 ~~~~~~~~~l~~~~----~-------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+++++..++|+.-- + ..|.++|+.+++.+..+... .++.+++.+.+.. ..| ++....++.+.+
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~--P~L---~~~~~~~~~l~v 316 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDK--PLL---YALSAGDGTLDV 316 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS---EE---EEEETTTTEEEE
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCC--cEE---EEEcCCCCeEEE
Confidence 56666555554321 1 36889999999988888742 4577899998874 222 223346789999
Q ss_pred EeCCCCceEEEEecCC
Q 033738 82 WDFSTPELLKTIDVKF 97 (112)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (112)
||..+|+.+..+..-.
T Consensus 317 ~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 317 YDAATGKLVRSIEQLG 332 (342)
T ss_dssp EETTT--EEEEE---S
T ss_pred EeCcCCcEEeehhccC
Confidence 9999999988887543
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.32 E-value=0.032 Score=34.92 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=25.7
Q ss_pred CCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCc
Q 033738 7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL 39 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~ 39 (112)
..+.. ..|||+|+.++...++.|.+++..++.
T Consensus 43 ~~~~~-~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 43 PKLQD-AKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp TTBSE-EEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred ccccc-ceeecCCCeeEEEecCceEEEECCCCC
Confidence 34555 899999999999999999999987663
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.14 Score=32.56 Aligned_cols=93 Identities=23% Similarity=0.188 Sum_probs=65.6
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee--cCCcEEEEeCCCCc
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS--LDETIKYWDFSTPE 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~ 88 (112)
+..++++..++... ++.+.+.|..+........... ....+++++++. ..+++.. .++.+.+.|..++.
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~------~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGK------YVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCC------EEEEEecccCCceEEEEeCCCCe
Confidence 67888887665554 6999999977766555444333 446889999985 2333444 47899999999888
Q ss_pred eEEEEecCCCEEEEEEcCCCcEeC
Q 033738 89 LLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
.+........-..+++.|+|+.+|
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEE
Confidence 887766554227889999998664
No 342
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.035 Score=36.89 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=64.7
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcE
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
++.|+..|.. +.|-.+-+.+++ .|+-+.+||.--+..+.+.. ...+.+..+..-++-. +.+ .++.++...++
T Consensus 780 Y~aHkk~i~~-igfL~~lr~i~S-cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~--~~i--liAgcsaeSTV 853 (1034)
T KOG4190|consen 780 YQAHKKPIHD-IGFLADLRSIAS-CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVD--RHI--LIAGCSAESTV 853 (1034)
T ss_pred hhhccCcccc-eeeeeccceeee-ccCcceeecccccchhHhhhcCcccCCCceeEecccCc--chh--eeeeccchhhh
Confidence 4567888887 877776665533 37889999986665554222 2333444444444421 222 34455778899
Q ss_pred EEEeCCCCceEEEEec-----CC-CEEEEEEcCCCcEe
Q 033738 80 KYWDFSTPELLKTIDV-----KF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~~-----~~-~v~~~~~~~~~~~~ 111 (112)
+++|.+.++....++. +. .+++++..+.|+.+
T Consensus 854 Kl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 854 KLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred eeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 9999988765544432 22 57888888888754
No 343
>PRK10115 protease 2; Provisional
Probab=96.19 E-value=0.23 Score=34.14 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=42.1
Q ss_pred eEEcCCCCEEEEEc--C----CeEEEEeCCCCceee-eccccCCceEEEEEecCCCCccceeEEEEeeec-----CCcEE
Q 033738 13 PAFSNDVKRLLVCT--S----NTVSIFSTSTGLQIS-SLEGHTAPVTTVIVVPASTPATKILSYCWTASL-----DETIK 80 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~----~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~ 80 (112)
+.++|||++|+.+. + ..+++.|+.++..+. .+.. . ...++|.+++. .++.+... ...++
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~------~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSW------TFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCC------EEEEEEecCCCCCCCEEE
Confidence 78999999988764 2 468888998775332 2221 1 14589999885 22333322 24677
Q ss_pred EEeCCCC
Q 033738 81 YWDFSTP 87 (112)
Q Consensus 81 ~~~~~~~ 87 (112)
.+++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 7888877
No 344
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.14 E-value=0.029 Score=23.33 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCCCEEEEEc--CCeEEEEeCCCCceeeeccc
Q 033738 17 NDVKRLLVCT--SNTVSIFSTSTGLQISSLEG 46 (112)
Q Consensus 17 ~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~ 46 (112)
|+++.|+.+. ++.|.++|..+++....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788777665 69999999988876666654
No 345
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.10 E-value=0.15 Score=35.23 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=47.1
Q ss_pred cCCCeEEcCCCCEEEEEcCCeEEEEeCCC--C--------cee---eec--------cccCCceEEEEEecCCCCcccee
Q 033738 9 VSSPPAFSNDVKRLLVCTSNTVSIFSTST--G--------LQI---SSL--------EGHTAPVTTVIVVPASTPATKIL 67 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~--~--------~~~---~~~--------~~~~~~v~~~~~~~~~~~~~~~~ 67 (112)
|.. +.++|+|++++..+...|.+..+.. | +.. +.+ ......|..+.|+|.+.++.+++
T Consensus 87 v~~-i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 87 VHQ-ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred EEE-EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 444 7789999999888854444444421 1 110 011 12345678999999864334444
Q ss_pred EEEEeeecCCcEEEEeCCCC
Q 033738 68 SYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 68 ~~~~~~~~d~~i~~~~~~~~ 87 (112)
.-..|+.+|+||+...
T Consensus 166 ----vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 ----VLTSDNTLRLYDISDP 181 (717)
T ss_pred ----EEecCCEEEEEecCCC
Confidence 6678999999998754
No 346
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.083 Score=34.93 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=50.5
Q ss_pred EEEEEcCCeEEEEeCCCCc--eeeeccc----cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738 21 RLLVCTSNTVSIFSTSTGL--QISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94 (112)
Q Consensus 21 ~l~~~~~~~v~~~~~~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 94 (112)
.|+--++..|.-||.+-.. .+....+ ......|.+-..+| +++.++.+|.||+||.-..+.-..++
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG--------~IvvgS~~GdIRLYdri~~~AKTAlP 468 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG--------YIVVGSLKGDIRLYDRIGRRAKTALP 468 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc--------eEEEeecCCcEEeehhhhhhhhhccc
Confidence 3444457889999986422 1111111 12334566666666 78899999999999973222223333
Q ss_pred c-CCCEEEEEEcCCCcEe
Q 033738 95 V-KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 95 ~-~~~v~~~~~~~~~~~~ 111 (112)
. +.+|..+..+-+|++|
T Consensus 469 gLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 469 GLGDAIKHVDVTADGKWI 486 (644)
T ss_pred ccCCceeeEEeeccCcEE
Confidence 3 3378888878888765
No 347
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.97 E-value=0.11 Score=36.87 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=45.2
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEE----eCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIF----STSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKY 81 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 81 (112)
+.|.+ +.+-++...++.+. +|.|.+. +..... +.....-+..+.+++||||+. .++..+.++++.+
T Consensus 76 ~~ivs-~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E-------lla~vT~~~~l~~ 146 (928)
T PF04762_consen 76 DKIVS-FQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEE-------LLALVTGEGNLLL 146 (928)
T ss_pred CcEEE-EEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcC-------EEEEEeCCCEEEE
Confidence 45665 77888887777776 8888888 444332 333333456799999999996 4455555666666
Q ss_pred E
Q 033738 82 W 82 (112)
Q Consensus 82 ~ 82 (112)
.
T Consensus 147 m 147 (928)
T PF04762_consen 147 M 147 (928)
T ss_pred E
Confidence 5
No 348
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.019 Score=36.89 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=59.3
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC-Cc-----e---------eeeccccCCceEEEEEecCCCCccceeE
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST-GL-----Q---------ISSLEGHTAPVTTVIVVPASTPATKILS 68 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~-~~-----~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 68 (112)
|..+|.. +.+.+-+..+.+.. .|.|..|.... .+ . +..+........++.++|++.
T Consensus 143 H~sPV~~-i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~------- 214 (558)
T KOG0882|consen 143 HFSPVKK-IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA------- 214 (558)
T ss_pred ccCceEE-EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-------
Confidence 7788887 99999998888887 79999998762 11 0 111112234557899999994
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEE
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTI 93 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~ 93 (112)
.+.+-+.|..|++++.++|+.++.+
T Consensus 215 qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccccCcccEEEEEEeccchhhhhh
Confidence 5667789999999999988765544
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.062 Score=36.38 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=49.3
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCcee-----eec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-----SSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
..++++..+++.|+ .+.|.++-++.+.+. ..+ ..|...|++++|++++. .+.+|...|.+..-.+.
T Consensus 82 ~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-------k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 82 RSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-------KLYSGDSQGKVVLTELD 154 (726)
T ss_pred EEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-------EEeecCCCceEEEEEec
Confidence 67888888888888 688888877653221 111 13577899999999994 55699999998887665
Q ss_pred C
Q 033738 86 T 86 (112)
Q Consensus 86 ~ 86 (112)
.
T Consensus 155 s 155 (726)
T KOG3621|consen 155 S 155 (726)
T ss_pred h
Confidence 5
No 350
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.85 E-value=0.1 Score=30.41 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=44.0
Q ss_pred CCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEE
Q 033738 17 NDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTI 93 (112)
Q Consensus 17 ~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 93 (112)
+++..+++++ ++.+..+|..+|+.+..+... ..+.......++ .++....++.++.+|..+|+.+...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~--------~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGG--------RVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETT--------EEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeeccc--------ccccccceeeeEecccCCcceeeee
Confidence 3566666665 899999999999877655542 221111122233 2234457779999999999988774
No 351
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.79 E-value=0.18 Score=33.88 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCCCcCCCeEEcCCC-----CEEEEEcCCeEEEEeCCC-----Cceeeecccc---CCce--EEEEEecCCCCccceeEE
Q 033738 5 GRSYVSSPPAFSNDV-----KRLLVCTSNTVSIFSTST-----GLQISSLEGH---TAPV--TTVIVVPASTPATKILSY 69 (112)
Q Consensus 5 h~~~v~~~~~~~~~~-----~~l~~~~~~~v~~~~~~~-----~~~~~~~~~~---~~~v--~~~~~~~~~~~~~~~~~~ 69 (112)
.-+.|.+ +.|.|-+ .+||......|-+|.+.. .+.+.....+ .-++ ..+-|+|... ++ .
T Consensus 55 qFEhV~G-lsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~----iL-~ 128 (671)
T PF15390_consen 55 QFEHVHG-LSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA----IL-T 128 (671)
T ss_pred ccceeee-eeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc----eE-E
Confidence 3467777 9999864 344444479999998752 2222211111 1112 4678999874 32 1
Q ss_pred EEeeecCCcEEEEeC--CCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 70 CWTASLDETIKYWDF--STPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
++++ .|-. -+.++ ++.+....++....+.+.+|.+||+.+
T Consensus 129 VLT~-~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 129 VLTA-RDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred EEec-Ccee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2222 2211 12233 333444455666689999999999875
No 352
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.70 E-value=0.17 Score=28.51 Aligned_cols=35 Identities=6% Similarity=0.022 Sum_probs=25.4
Q ss_pred ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 50 PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 50 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
.+..++|||.|-..+.- ++++..+.++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~r-ClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGR-CLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCc-eEEEEEcCCCeEEEEecC
Confidence 67899999965322222 367788889999999765
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.62 E-value=0.24 Score=29.73 Aligned_cols=100 Identities=11% Similarity=0.133 Sum_probs=58.8
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeecccc-CCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGH-TAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+-...+++ ++|.|+.+.|++.. .+.|..++.+ |+.++.+.-. .+..-.+++..++ .++++.-.++.+.
T Consensus 19 g~~~e~SG-LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-------~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 19 GILDELSG-LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-------RYVLSEERDQRLY 89 (248)
T ss_dssp T--S-EEE-EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-------EEEEEETTTTEEE
T ss_pred CccCCccc-cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-------EEEEEEcCCCcEE
Confidence 33345777 99999987666665 5888888865 6667666532 3456788887776 2566666788999
Q ss_pred EEeCCCC--c----eEEEEe--cC----CCEEEEEEcCCCcEeC
Q 033738 81 YWDFSTP--E----LLKTID--VK----FPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~--~----~~~~~~--~~----~~v~~~~~~~~~~~~~ 112 (112)
++++... . ....+. .. ..+..++|.|.++.+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~ 133 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF 133 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE
Confidence 8887321 1 112222 11 2589999999876653
No 354
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.62 E-value=0.3 Score=30.80 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=42.3
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 94 (112)
+..++.++ ++.+..+|..+|+.+-.............. ++. .++.++.++.++.+|..+|+.+....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~-------~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGG-------LVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCC-------EEEEEcCCCEEEEEECCCCcEeeeec
Confidence 45666666 789999999888876554432221112222 232 34466778899999988887765544
No 355
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=95.57 E-value=0.15 Score=31.99 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=51.6
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCC-CCceeeecc-ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-TGLQISSLE-GHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
++||.+.+.+ ...-|....+++.+ |.++++|--+ .++.-..+. ....+++++.+.++.. .++.+-.++.
T Consensus 20 ~eG~~d~vn~-~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-------~L~vg~~ngt 91 (404)
T KOG1409|consen 20 IEGSQDDVNA-AILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-------RLYVGQDNGT 91 (404)
T ss_pred hcCchhhhhh-heeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-------EEEEEEecce
Confidence 5788888887 77778888888998 8999999643 333222221 2345567888877763 5557777788
Q ss_pred EEEEeC
Q 033738 79 IKYWDF 84 (112)
Q Consensus 79 i~~~~~ 84 (112)
+.-+.+
T Consensus 92 vtefs~ 97 (404)
T KOG1409|consen 92 VTEFAL 97 (404)
T ss_pred EEEEEh
Confidence 777754
No 356
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=0.051 Score=38.22 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=48.7
Q ss_pred eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC-CEEEEEEcCCCcE
Q 033738 40 QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 110 (112)
..+.+..+....+|++|+-+.+ .++.|...|.+++++..+|........|. +++.+.=+.+|..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~-------hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTN-------HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred cchhhhccccceeeEEeecCCc-------eEEeeeccceEEEEEccCccccccccccccccccccccCCcce
Confidence 3456666778889999998884 77799999999999999998777766665 6665555555543
No 357
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.3 Score=30.07 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEcC-C-eEEEEeCCCCceeeeccc-cCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCTS-N-TVSIFSTSTGLQISSLEG-HTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~~-~-~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|-...+.+ +.|+|+.+.|.+..+ . .+...+ ..|+.++.++- .-+..-.+++..++. +.++--.++.++
T Consensus 83 g~~~nvS~-LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~-------fvi~dER~~~l~ 153 (316)
T COG3204 83 GETANVSS-LTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQ-------FVIVDERDRALY 153 (316)
T ss_pred cccccccc-eeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCE-------EEEEehhcceEE
Confidence 33455776 999999988887774 3 333333 34776766542 122234667766663 556667778888
Q ss_pred EEeCCCCceEE-----EEec------CCCEEEEEEcCCCcEeC
Q 033738 81 YWDFSTPELLK-----TIDV------KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 81 ~~~~~~~~~~~-----~~~~------~~~v~~~~~~~~~~~~~ 112 (112)
++.+.....+. .++. ......++|.|....+|
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~ 196 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF 196 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE
Confidence 77665432211 1111 11567888888776553
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.51 E-value=0.15 Score=26.63 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=15.1
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCCCEEEEEE
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKFPIFSMVR 104 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~ 104 (112)
.++.|..||+|+-. +.+..+.....+.++.-
T Consensus 20 vGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~ 50 (111)
T PF14783_consen 20 VGSDDFEIRVFKGD--EIVAEITETDKVTSLCS 50 (111)
T ss_pred EecCCcEEEEEeCC--cEEEEEecccceEEEEE
Confidence 56666666666532 24444444444444433
No 359
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.48 E-value=0.072 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=23.0
Q ss_pred CcCCCeEEcCCC---CEEEEEc-CCeEEEEeCCC
Q 033738 8 YVSSPPAFSNDV---KRLLVCT-SNTVSIFSTST 37 (112)
Q Consensus 8 ~v~~~~~~~~~~---~~l~~~~-~~~v~~~~~~~ 37 (112)
.+.+ ++|+|+. .+|+.+- .+.+.++|+++
T Consensus 2 AvR~-~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRC-CKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEE-EEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4666 8999854 5888777 69999999985
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.32 E-value=0.18 Score=26.35 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=36.2
Q ss_pred cCCC-CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 16 SNDV-KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 16 ~~~~-~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
..|| +.|+.|+ |..|++|+-. ..+..+.. ...+..+.-...+ .++.+-.+|+|-+|+-
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~--------~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGG--------RFAYALANGTVGVYDR 70 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCC--------EEEEEecCCEEEEEeC
Confidence 3344 5777887 8999999754 34555553 3456666555554 4556666676666653
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.20 E-value=0.48 Score=30.58 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=44.1
Q ss_pred eEEcCCCCEEEEEcCC------------eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 13 PAFSNDVKRLLVCTSN------------TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
++.+|.|-.+|...|. .|.+|+.. |+.+..+.-..+.+.++.|+.+. -++....||.++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e--------~LvvV~~dG~v~ 104 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE--------ELVVVQSDGTVR 104 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC--------eEEEEEcCCEEE
Confidence 3455656555554432 47888765 66676666555788999998876 344677899999
Q ss_pred EEeCC
Q 033738 81 YWDFS 85 (112)
Q Consensus 81 ~~~~~ 85 (112)
++|..
T Consensus 105 vy~~~ 109 (410)
T PF04841_consen 105 VYDLF 109 (410)
T ss_pred EEeCC
Confidence 99986
No 362
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.05 E-value=0.057 Score=33.40 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=48.8
Q ss_pred cCCCeEEcCCCC-EEEEE-cCCeEEEEeCCCCce------e----------eeccccCCceEEEEEecCCCCccceeEEE
Q 033738 9 VSSPPAFSNDVK-RLLVC-TSNTVSIFSTSTGLQ------I----------SSLEGHTAPVTTVIVVPASTPATKILSYC 70 (112)
Q Consensus 9 v~~~~~~~~~~~-~l~~~-~~~~v~~~~~~~~~~------~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 70 (112)
+.. ..|+|... .+... +.|.|++-|++.... + .-+..-...+..+.|++.++ |+
T Consensus 224 ItS-aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-------yI 295 (460)
T COG5170 224 ITS-AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-------YI 295 (460)
T ss_pred Hhh-cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-------EE
Confidence 343 78888753 33333 479999999873210 1 11122345677889999995 55
Q ss_pred EeeecCCcEEEEeCCC-CceEEEEec
Q 033738 71 WTASLDETIKYWDFST-PELLKTIDV 95 (112)
Q Consensus 71 ~~~~~d~~i~~~~~~~-~~~~~~~~~ 95 (112)
++-.. -++++||... ..++.++..
T Consensus 296 lsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 296 LSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred EEecc-ceEEEEecccccCCceeech
Confidence 45433 5899999874 456666644
No 363
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.00 E-value=0.51 Score=31.48 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=22.5
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEe
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTID 94 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~ 94 (112)
++++.+.|+.+|+||+.++.++.+..
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec
Confidence 66799999999999999999976653
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.96 E-value=0.15 Score=32.58 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=34.6
Q ss_pred EEEEecCCCCccceeEEEEeeecC--CcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 53 TVIVVPASTPATKILSYCWTASLD--ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
...++|+++ .++ +.++.+.+ ..++++|+++|+.+...-.......+.|.++++.+|
T Consensus 128 ~~~~Spdg~---~la-~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 128 GFSVSPDGK---RLA-YSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEETTTSS---EEE-EEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEE
T ss_pred eeeECCCCC---EEE-EEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEE
Confidence 567889984 333 43333333 469999999997654321111222389999987654
No 365
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.95 E-value=0.12 Score=22.18 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=25.0
Q ss_pred CceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738 49 APVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 49 ~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 87 (112)
+.+.++.|+|..... .+++..-..+.+.++|++++
T Consensus 1 GAvR~~kFsP~~~~~----DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGN----DLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcc----cEEEEEccCCeEEEEEcccC
Confidence 357899999754100 15567778899999999853
No 366
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.87 E-value=0.4 Score=27.92 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCeEEEEeCCCCceeeecccc--CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec
Q 033738 27 SNTVSIFSTSTGLQISSLEGH--TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV 95 (112)
Q Consensus 27 ~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 95 (112)
++.|..+|.++++.+-..... .....+.....++ .++.++.++.++.||..+|+.+.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGG--------RVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETT--------EEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCC--------EEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 478899999888877655431 1222221332344 444567899999999999988766654
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.82 E-value=0.29 Score=34.25 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=41.5
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
++-+.+| .++.|+ +|.||+||-...+....+++-+.+|..+..+.+|+ ++++.+ +..+-+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk-------wilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK-------WILATC-KTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc-------EEEEee-cceEEEEEE
Confidence 4445555 566666 89999999543344456667788999999999995 333332 345556553
No 368
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.75 E-value=0.63 Score=29.68 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=21.3
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEec
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTIDV 95 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~ 95 (112)
.++.++.+|.++..|..+|+.+...+.
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 455678889999999999988776654
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.58 E-value=0.73 Score=29.68 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=29.0
Q ss_pred cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEE
Q 033738 47 HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKT 92 (112)
Q Consensus 47 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 92 (112)
..++|++++.|.-| +++.+..+|.+.+.|++....+..
T Consensus 85 ~~g~vtal~~S~iG--------Fvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 85 KQGPVTALKNSDIG--------FVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp -S-SEEEEEE-BTS--------EEEEEETTSEEEEEETTTTEEEEE
T ss_pred cCCcEeEEecCCCc--------EEEEEecCCcEEEEECCCCeEEee
Confidence 46889999998777 788899999999999986665544
No 370
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.52 E-value=0.57 Score=28.14 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=52.5
Q ss_pred CcCCCeEEcCCCCEEEEEc--C--CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 8 YVSSPPAFSNDVKRLLVCT--S--NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
.+.. .++++|++.++... + ..+.++... ....... .......-.|++++. .......+...+++.
T Consensus 25 ~~~s-~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~-------~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTS-PAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGW-------VWTVDDGSGGVRVVR 93 (253)
T ss_pred cccc-eEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCC-------EEEEEcCCCceEEEE
Confidence 3555 89999998877654 4 455555443 2222222 223456678888874 333444455555553
Q ss_pred -CCCCceE-EEEecC--C-CEEEEEEcCCCcEe
Q 033738 84 -FSTPELL-KTIDVK--F-PIFSMVRGKKGFAV 111 (112)
Q Consensus 84 -~~~~~~~-~~~~~~--~-~v~~~~~~~~~~~~ 111 (112)
..++... ...... . .|.++.++|||..+
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~Rv 126 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRV 126 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEE
Confidence 3333222 222222 2 79999999999765
No 371
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.35 E-value=0.79 Score=29.08 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=18.6
Q ss_pred cEEEEeCCCCceEEEEec-CCCEEEEEEcCCCcEe
Q 033738 78 TIKYWDFSTPELLKTIDV-KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 78 ~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~ 111 (112)
.+.-++...++. ..+.. ......++|+|+|+.+
T Consensus 165 ~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred eEEEEecCCCeE-EEEecCcCCCccceECCCCCEE
Confidence 344445544433 33332 2366788999988764
No 372
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.3 Score=31.83 Aligned_cols=100 Identities=15% Similarity=-0.015 Sum_probs=56.2
Q ss_pred CCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEEEE--ecCCCCccceeEEEEeeecCCcE
Q 033738 4 GGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTVIV--VPASTPATKILSYCWTASLDETI 79 (112)
Q Consensus 4 ~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~d~~i 79 (112)
.|...+.. ++.+.+|.++.+.+ |..++++|+.+...+..++-..-+ ..+.| ++.. .+..+.++.-.++.+
T Consensus 51 aHL~~I~s-l~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd----~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 51 AHLGVILS-LAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGD----KISLIAVSLFKSGKI 124 (558)
T ss_pred HHHHHHHh-hhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCC----eeeeEEeecccCCCc
Confidence 35556666 88899999998865 799999998765444333322211 12233 2322 122234455567889
Q ss_pred EEEeCCCCceE--EEEecCC-CEEEEEEcCCCc
Q 033738 80 KYWDFSTPELL--KTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~~-~v~~~~~~~~~~ 109 (112)
.++|-....+. ..-..|. +|..+.+++.+.
T Consensus 125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred EEECCcCCcCccceecccccCceEEEEeecccc
Confidence 99986644321 1112233 666666655543
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.90 E-value=0.26 Score=29.15 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=35.8
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeeccccC-CceEEEEEecCCCCccceeEEEEee--ecCCcEEEEeCC
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHT-APVTTVIVVPASTPATKILSYCWTA--SLDETIKYWDFS 85 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~~~~~~ 85 (112)
.+..++. ++.|+.|+++..+.+.....|+ .++.....+..+. .+..+ +.|..++.|++.
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~-------~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE-------FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc-------eEEeeccccchhhhhcchh
Confidence 3555665 8999999998777666555555 3344443433332 33344 666777777765
No 374
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.85 E-value=0.21 Score=20.62 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=24.7
Q ss_pred EEeeecCCcEEEEeCCCCceEEEEecCCCEEEEEE
Q 033738 70 CWTASLDETIKYWDFSTPELLKTIDVKFPIFSMVR 104 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~ 104 (112)
+++...++.+.++|..++..+..+........+.|
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 34556678999999988888777776554444544
No 375
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=93.30 E-value=0.44 Score=33.76 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=43.4
Q ss_pred CCCCcCCCeEEcCCCCEEEE-Ec-CC-----eEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeec
Q 033738 5 GRSYVSSPPAFSNDVKRLLV-CT-SN-----TVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASL 75 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~-~~-~~-----~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 75 (112)
+...+.. .+|||||+.|+. .+ .+ .|.+-++.+. ..+..+......|......++|+ +.|+ |+-.++.
T Consensus 348 ~~~~i~s-P~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gd--t~iv-yv~~a~n 422 (912)
T TIGR02171 348 DTISVYH-PDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGD--TVIV-YVSDASN 422 (912)
T ss_pred CCCceec-CcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCC--eEEE-EEcCCCC
Confidence 4556676 899999999987 44 32 4888888763 33456666666677777777774 4343 4444443
No 376
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.30 E-value=0.98 Score=26.62 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=43.2
Q ss_pred EEcCCCCEEEEEc-CCeEEEEeCCCCceeeec-------c-------ccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 14 AFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL-------E-------GHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 14 ~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
.+..+++++.+.+ +|.+++||+.+++.+..- . .....|..+.++.+|. .+++- .+|.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-------PiV~l-sng~ 88 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-------PIVTL-SNGD 88 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-------EEEEE-eCCC
Confidence 3556778887777 899999999877543211 1 2345577788887773 33333 3467
Q ss_pred EEEEeCCCCc
Q 033738 79 IKYWDFSTPE 88 (112)
Q Consensus 79 i~~~~~~~~~ 88 (112)
.+.|+..-+.
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 7888766443
No 377
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.16 E-value=0.82 Score=27.53 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=37.0
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEe
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVV 57 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~ 57 (112)
+++..+|++.++.- .++|...|..+|+.+..+.-....+++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 66777777777776 6899999999999888887778889999884
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.14 E-value=1.1 Score=26.89 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=57.7
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEE-eCCCCce-eeecc--ccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIF-STSTGLQ-ISSLE--GHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~-~~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
.+.. ..|++++....... +...+++ +...+.. ...+. ...+.|..+++|||+ .+++ +++....++.+.+-
T Consensus 67 ~l~~-PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG---~RvA-~v~~~~~~~~v~va 141 (253)
T PF10647_consen 67 SLTR-PSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDG---TRVA-VVVEDGGGGRVYVA 141 (253)
T ss_pred cccc-ccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCC---cEEE-EEEecCCCCeEEEE
Confidence 4454 78999977666655 4555554 2222321 11222 122279999999999 4565 56666666788776
Q ss_pred eCC---CC------ceEEEEec-CCCEEEEEEcCCCcEe
Q 033738 83 DFS---TP------ELLKTIDV-KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~---~~------~~~~~~~~-~~~v~~~~~~~~~~~~ 111 (112)
-+. .+ ........ ...+.++.|.+++..+
T Consensus 142 ~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 142 GVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred EEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 432 23 11111111 2378899999988754
No 379
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.12 E-value=1.7 Score=31.96 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=46.1
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
+.|.+ +.+..+.+.++.+. .|.|.+.|.++.. +.....-...|.+++|+|++. .++-.+..+++.+.+
T Consensus 69 ~~i~s-~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee-------~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVS-VQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEE-------LLALITGRQTLLFMT 137 (1265)
T ss_pred cceEE-EEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCc-------EEEEEeCCcEEEEEe
Confidence 45665 77888887777776 7888888877653 333333456789999999995 444555556666543
No 380
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.86 E-value=1.3 Score=26.74 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=40.0
Q ss_pred eccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcEe
Q 033738 43 SLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFAV 111 (112)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 111 (112)
.+.+-...+..++|.|+.. .+++.....+.|..++. +|+.++.+.... ....+++..++.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~------tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTG------TLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYV 79 (248)
T ss_dssp E-TT--S-EEEEEEETTTT------EEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEE
T ss_pred ECCCccCCccccEEcCCCC------eEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEE
Confidence 3444455689999999864 35567777888888886 488888876553 78888887776654
No 381
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=0.43 Score=33.95 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=52.6
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec---------CCCCccceeEEEEeeecCCcEEEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP---------ASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
++.+|+|++.+... -+.|.+.|+.....++.+++.... .+.|-+ .++....++ +.+-+-+.|.+-+|
T Consensus 327 lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDA--sc~fv~vkek~~~s~~~~sRvAlF-LvIyAPRrgiLEVW 403 (1244)
T KOG2727|consen 327 LSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDA--SCVFVEVKEKKGKSEPVKSRVALF-LVIYAPRRGILEVW 403 (1244)
T ss_pred eeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccc--eeEEEEcccccCCCccCcCceeEE-EEEecccccHHHHH
Confidence 78899998887776 489999999887777777765443 233333 111111222 44556777889999
Q ss_pred eCCCCceEEEEe
Q 033738 83 DFSTPELLKTID 94 (112)
Q Consensus 83 ~~~~~~~~~~~~ 94 (112)
.+.+|..+..+.
T Consensus 404 ~~q~gpRV~Afn 415 (1244)
T KOG2727|consen 404 QMQTGPRVLAFN 415 (1244)
T ss_pred HhccCCeEEEEe
Confidence 998887666554
No 382
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.33 E-value=0.24 Score=33.68 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=45.6
Q ss_pred CcCCCeEEcC-CCCEEEEEcCCeEEEEeC-CCCc-eeeeccc----cCCceEEEEEecCCCCccceeEEEEeeec-CCcE
Q 033738 8 YVSSPPAFSN-DVKRLLVCTSNTVSIFST-STGL-QISSLEG----HTAPVTTVIVVPASTPATKILSYCWTASL-DETI 79 (112)
Q Consensus 8 ~v~~~~~~~~-~~~~l~~~~~~~v~~~~~-~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-d~~i 79 (112)
.+.. +.++| .++++++..|+.+-+||. ...+ .+..+.. ....+..++|+|... ..+++... .++|
T Consensus 197 ~vqG-~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt------glla~l~RdS~tI 269 (783)
T KOG1008|consen 197 YVQG-ITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT------GLLAVLSRDSITI 269 (783)
T ss_pred hccc-ceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc------chhhhhccCcceE
Confidence 4555 77788 678887777999999994 3222 2222222 223488999999764 23345554 4789
Q ss_pred EEEeCC
Q 033738 80 KYWDFS 85 (112)
Q Consensus 80 ~~~~~~ 85 (112)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999875
No 383
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.99 E-value=1.6 Score=25.77 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=18.5
Q ss_pred EEEeeecCCcEEEEeCCCCceE
Q 033738 69 YCWTASLDETIKYWDFSTPELL 90 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~ 90 (112)
++++.+.+|.+++||+.+++++
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeec
Confidence 6678889999999999987654
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.82 E-value=2.8 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=23.7
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
+++.+..++.++.+|.++|+.+...+...
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 34457779999999999999998887655
No 385
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.41 E-value=0.04 Score=37.05 Aligned_cols=87 Identities=25% Similarity=0.315 Sum_probs=50.8
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEEEEe-CCCCc-
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIKYWD-FSTPE- 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~-~~~~~- 88 (112)
++|..+.+++.+|. ...+.++|++... ...-...+..+..+.+.| ... |+ +...|+.+.+|| ..+-+
T Consensus 160 ~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~n-------Y~-cs~~dg~iAiwD~~rnien 230 (783)
T KOG1008|consen 160 VCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPN-------YF-CSNSDGDIAIWDTYRNIEN 230 (783)
T ss_pred cccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCC-------ce-eccccCceeeccchhhhcc
Confidence 67777778888887 6789999987432 111122344566677777 332 44 445599999999 33221
Q ss_pred eEEEEec-----CCCEEEEEEcCCC
Q 033738 89 LLKTIDV-----KFPIFSMVRGKKG 108 (112)
Q Consensus 89 ~~~~~~~-----~~~v~~~~~~~~~ 108 (112)
++..+.. ...+..++|+|..
T Consensus 231 pl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 231 PLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred HHHHHhhCCCCcccceeeEEeccCC
Confidence 1111111 1147777777743
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.40 E-value=2 Score=25.67 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=38.2
Q ss_pred CEEEEEc-CCeEEEEeCCCCcee-eeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQI-SSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK 96 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 96 (112)
..++.|+ ++.|.+|...-.... ..+......+-+. -|.++.. ++..+++.++.+|.|+...++.+....++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~~~----~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGRDS----SLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceec--ccccccc----ceeEEeccCCceeeeccccCceeeeeccc
Confidence 4556666 899999887632111 1222222222221 2333200 14457888999999998876665554443
No 387
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.36 E-value=2.6 Score=26.98 Aligned_cols=66 Identities=8% Similarity=0.039 Sum_probs=41.5
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEE-EEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEe
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTT-VIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTID 94 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 94 (112)
+..++.++ ++.+.-+|.++|+..-...... .+.+ .... ++ .++.+..++.++-+|.++|+.+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~-~~--------~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS-DG--------LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE-CC--------EEEEECCCCEEEEEEccCCCEeeeec
Confidence 44566666 7999999999998765554322 2211 1111 23 23356677889999999888776554
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.44 E-value=4.4 Score=28.05 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=49.7
Q ss_pred CCeEEEEeCCCCceee--eccccCCceEEEEEec--CCCCccceeEEEEeeecCCcEEEEeC-----CC----CceEEEE
Q 033738 27 SNTVSIFSTSTGLQIS--SLEGHTAPVTTVIVVP--ASTPATKILSYCWTASLDETIKYWDF-----ST----PELLKTI 93 (112)
Q Consensus 27 ~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~-----~~----~~~~~~~ 93 (112)
...+.+||...+.... .+ ...+.|.+++|.. ++. .+++.|..+.|.++.- .. -..+..+
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~q-------siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQ-------SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred CCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCC-------EEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 4789999998775322 22 3567889999864 443 4557788888888732 11 1233333
Q ss_pred ec----CCCEEEEEEcCCCcEe
Q 033738 94 DV----KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 94 ~~----~~~v~~~~~~~~~~~~ 111 (112)
.. +.++.+..|.++|..+
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~Lv 143 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLV 143 (631)
T ss_pred EeecCCCCCccceeEecCCeEE
Confidence 22 2378889999988765
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.29 E-value=2.8 Score=25.60 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=55.9
Q ss_pred EEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc--cCC---ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCC
Q 033738 14 AFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG--HTA---PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTP 87 (112)
Q Consensus 14 ~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 87 (112)
-+..|++.|+.+. ...++.+|.++.+..+.+.. ... .++-+.|. ++. +++..-....|...|..+|
T Consensus 134 GLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-------IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 134 GLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-------IYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-------EEEEETTSSEEEEEETTT-
T ss_pred EEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-------EEEEeCCCCeEEEEeCCCC
Confidence 3446777777665 78999999887765555432 222 34456665 452 5556666677888899999
Q ss_pred ceEEEEecC----------------CCEEEEEEcCCCcEeC
Q 033738 88 ELLKTIDVK----------------FPIFSMVRGKKGFAVF 112 (112)
Q Consensus 88 ~~~~~~~~~----------------~~v~~~~~~~~~~~~~ 112 (112)
.++..+... .-.+.++|.|.++.+|
T Consensus 206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~ 246 (264)
T PF05096_consen 206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF 246 (264)
T ss_dssp BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence 887766311 1368899998877654
No 390
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.05 E-value=1.2 Score=22.35 Aligned_cols=39 Identities=15% Similarity=-0.011 Sum_probs=24.3
Q ss_pred eecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEe
Q 033738 73 ASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 73 ~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (112)
+..+|.+..||..+++....+..-.-.+.+++++|+..+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~v 71 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFV 71 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEE
Confidence 344577888888877665444444467778888888755
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.74 E-value=3.4 Score=25.78 Aligned_cols=92 Identities=9% Similarity=0.085 Sum_probs=51.2
Q ss_pred eEEcCCC-CEEEEEc--CCeEEEEeCCCCceeeeccccCCceE--EEEEecCCCCccceeEEEEeeec-----CCcEEEE
Q 033738 13 PAFSNDV-KRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVT--TVIVVPASTPATKILSYCWTASL-----DETIKYW 82 (112)
Q Consensus 13 ~~~~~~~-~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~ 82 (112)
+.++|.- ..++.+- .....++|.+..+.+..+...++... .=.|||++. ++...-+ .|.|-+|
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-------~LYATEndfd~~rGViGvY 145 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-------LLYATENDFDPNRGVIGVY 145 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-------EEEeecCCCCCCCceEEEE
Confidence 4555543 3344443 34556777776655544443333221 225889995 4434333 3788999
Q ss_pred eCCCC-ceEEEEecCC-CEEEEEEcCCCcEe
Q 033738 83 DFSTP-ELLKTIDVKF-PIFSMVRGKKGFAV 111 (112)
Q Consensus 83 ~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~ 111 (112)
|.+.+ ..+-.+..+. ....+.|.+||+.+
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtl 176 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTL 176 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEE
Confidence 98754 2334444444 55567778888765
No 392
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.65 E-value=1 Score=30.15 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=22.4
Q ss_pred eEEcC----CCCEEEEEc-CCeEEEEeCCCCceee
Q 033738 13 PAFSN----DVKRLLVCT-SNTVSIFSTSTGLQIS 42 (112)
Q Consensus 13 ~~~~~----~~~~l~~~~-~~~v~~~~~~~~~~~~ 42 (112)
..++. +..++++.+ |+.+|+||+.+++++.
T Consensus 220 ~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 220 LAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred EEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 45555 567787888 9999999999988743
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.46 E-value=3.6 Score=25.66 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=45.8
Q ss_pred CCcCCCeEEcCCCCEEEEEcCC-eEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 7 SYVSSPPAFSNDVKRLLVCTSN-TVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~~~-~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
+.+.. +.-++||++++.+..| ...-||.-.. -.... .....++..+.|.|++. +.+ ....+.++.=+.
T Consensus 145 gs~~~-~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~-------lw~-~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 GSIND-ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGN-------LWM-LARGGQIQFSDD 214 (302)
T ss_dssp --EEE-EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS--------EEE-EETTTEEEEEE-
T ss_pred ceeEe-EEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCC-------EEE-EeCCcEEEEccC
Confidence 34444 6678999999888854 4556664321 11222 22457799999999984 322 347788888762
Q ss_pred C-CCceEEE--Ee--cCC-CEEEEEEcCCCcE
Q 033738 85 S-TPELLKT--ID--VKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 85 ~-~~~~~~~--~~--~~~-~v~~~~~~~~~~~ 110 (112)
. ..+.-.. .. ... .+..++|.++++.
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 2 1211111 11 112 4778888876653
No 394
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.08 E-value=4.7 Score=27.43 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=42.8
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCC---------CCceeeec----------ccc-CCceEEEEEecCCCCccceeEEEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTS---------TGLQISSL----------EGH-TAPVTTVIVVPASTPATKILSYCW 71 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~---------~~~~~~~~----------~~~-~~~v~~~~~~~~~~~~~~~~~~~~ 71 (112)
+..++.|..++-.+ +|.+.|+-.+ .++....+ ... .-.+...+|+|+.-.+.+++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~---- 184 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV---- 184 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE----
Confidence 66788898887666 7776654311 22211111 111 12345778999873224444
Q ss_pred eeecCCcEEEEeCCCCce
Q 033738 72 TASLDETIKYWDFSTPEL 89 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~ 89 (112)
.-.+|..+|+||..+-..
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 567789999999875443
No 395
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=5.3 Score=26.71 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce----eeeccccCCceEEEEEecCC
Q 033738 6 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ----ISSLEGHTAPVTTVIVVPAS 60 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~ 60 (112)
.+.+.. ++||+|.+.++... +++|.+++....+. ....+.....+....|+...
T Consensus 66 ~G~I~S-IkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~ 124 (657)
T KOG2377|consen 66 KGEIKS-IKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST 124 (657)
T ss_pred CCceeE-EEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe
Confidence 457776 99999999999887 89999998743221 12233344457777887664
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.38 E-value=4.8 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCc---eeeecc-c---------------cCCceEEEEEecCCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGL---QISSLE-G---------------HTAPVTTVIVVPAST 61 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~---~~~~~~-~---------------~~~~v~~~~~~~~~~ 61 (112)
..++. +.+|.|.++|+.++ +|.++.||+.... ...++. + -.+....++.|.|++
T Consensus 312 ~LitD-I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk 386 (461)
T PF05694_consen 312 PLITD-ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK 386 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS
T ss_pred CceEe-EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe
Confidence 45677 89999999998776 8999999997532 222221 0 112347888999995
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.05 E-value=5.5 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.0
Q ss_pred CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC--CCEEEEEEcCCCc
Q 033738 48 TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK--FPIFSMVRGKKGF 109 (112)
Q Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 109 (112)
.+++..++.||+++ +++.-..+|.+.+....-.+....+... .....+.|+.+..
T Consensus 216 ~~~i~~iavSpng~-------~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 216 DGPIIKIAVSPNGK-------FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCeEEEEECCCCC-------EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 46789999999995 5556667788888765444455454444 3556677765543
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.94 E-value=3.2 Score=27.16 Aligned_cols=44 Identities=5% Similarity=-0.028 Sum_probs=33.5
Q ss_pred cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 47 HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 47 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
....+..+..+|.+. +.+....=|+|.++|+..+..++.+++-.
T Consensus 306 ~~R~~~~i~~sP~~~-------laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 306 SKREGESICLSPSGR-------LAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred CCceEEEEEECCCCC-------EEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 334567888999984 66666667999999999988887777543
No 399
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.92 E-value=5.4 Score=27.12 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=26.1
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEec-CCCEEEEEEcCCCcEe
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTIDV-KFPIFSMVRGKKGFAV 111 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~ 111 (112)
|++.++..|.|++||.-..+.-..++. +..+-.+..+.+|+.+
T Consensus 575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~i 618 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHI 618 (776)
T ss_pred eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEE
Confidence 888999999999998643332222222 2255555555555543
No 400
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.75 E-value=4.7 Score=24.88 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=47.7
Q ss_pred eEEcCCCC-EEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738 13 PAFSNDVK-RLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL 90 (112)
Q Consensus 13 ~~~~~~~~-~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 90 (112)
+.+.+|.+ +++.|+ .+.+.-.|.++|+.+..-. -+.++.+-+.- -++ +++.++..+.+++.+..+|+..
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgd-------fVV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGD-------FVVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECC-------EEEEEEccCcEEEEEecchhhe
Confidence 44555654 555666 6888888999887653322 12334333333 232 6678999999999999999766
Q ss_pred EEEec
Q 033738 91 KTIDV 95 (112)
Q Consensus 91 ~~~~~ 95 (112)
..+..
T Consensus 87 w~f~~ 91 (354)
T KOG4649|consen 87 WNFVI 91 (354)
T ss_pred eeeee
Confidence 55543
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.48 E-value=4.1 Score=29.56 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=42.9
Q ss_pred EEcCCCCEEEEEc-CCeEEEEeCC-CC----ceeeeccccCC-ceEEEEEecCCCC---c-cceeEEEEeeecCCcEEEE
Q 033738 14 AFSNDVKRLLVCT-SNTVSIFSTS-TG----LQISSLEGHTA-PVTTVIVVPASTP---A-TKILSYCWTASLDETIKYW 82 (112)
Q Consensus 14 ~~~~~~~~l~~~~-~~~v~~~~~~-~~----~~~~~~~~~~~-~v~~~~~~~~~~~---~-~~~~~~~~~~~~d~~i~~~ 82 (112)
.+||||..+++.. ||.++.|.+. ++ ++....+.|++ +-.|.-+...... . .+.+ .+-+..-++.+++|
T Consensus 242 ~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~-~Itttd~nre~k~w 320 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVL-RITTTDVNREEKFW 320 (1283)
T ss_pred eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEE-EEecccCCcceeEe
Confidence 4799999999887 8988888653 22 34455566663 2223223221100 0 1111 23334446778889
Q ss_pred eCCCCceE
Q 033738 83 DFSTPELL 90 (112)
Q Consensus 83 ~~~~~~~~ 90 (112)
....-+|+
T Consensus 321 ~~a~w~Cl 328 (1283)
T KOG1916|consen 321 AEAPWQCL 328 (1283)
T ss_pred eccchhhh
Confidence 87666665
No 402
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.39 E-value=1.3 Score=17.97 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=10.0
Q ss_pred cCCceEEEEEecCCC
Q 033738 47 HTAPVTTVIVVPAST 61 (112)
Q Consensus 47 ~~~~v~~~~~~~~~~ 61 (112)
....-....|+|+++
T Consensus 7 ~~~~~~~p~~SpDGk 21 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGK 21 (39)
T ss_dssp SSSSEEEEEE-TTSS
T ss_pred CCccccCEEEecCCC
Confidence 344557889999995
No 403
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=87.10 E-value=6.3 Score=25.62 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=42.4
Q ss_pred EEEEEcCCeEEEEeCCCCceeeeccccCCceEEEEEec-----CCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEec
Q 033738 21 RLLVCTSNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP-----ASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDV 95 (112)
Q Consensus 21 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 95 (112)
+++.+++..++++...+.+.........-....+.+-+ .+ ..+++-..+|.++++.+..-+.+.....
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~-------~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG-------YCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE-------EEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCc-------eEEEEEECCCcEEEEECCCchHhhcccC
Confidence 55666788999998877665544332111122333321 22 2456778899999999987666665554
Q ss_pred CC-----CEEEEEEcCCCcEe
Q 033738 96 KF-----PIFSMVRGKKGFAV 111 (112)
Q Consensus 96 ~~-----~v~~~~~~~~~~~~ 111 (112)
+. .+....++++|+.+
T Consensus 301 ~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp SS---HHHHTT-EE-TTS-EE
T ss_pred CCccccccccccEECCCCCEE
Confidence 32 23445567777654
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.01 E-value=5.7 Score=25.00 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=31.4
Q ss_pred eEEcCCCCEEEEEcCCeEEEEeCCCCce---eeec----cccCCceEEEEEecC
Q 033738 13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQ---ISSL----EGHTAPVTTVIVVPA 59 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~---~~~~----~~~~~~v~~~~~~~~ 59 (112)
++|.|||+.+++-..|.|++++ ..+.. +..+ .........++++|+
T Consensus 7 ~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 7 MAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred EEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 8999999888876689999999 33332 2222 224456789999996
No 405
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=86.95 E-value=4.9 Score=24.18 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=37.3
Q ss_pred cCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
...++.|+.|+ +| +.+++........... +...|..+...|+-+ .++ .- .|+.++++++..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~---~ll----vL-sd~~l~~~~L~~ 65 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN---LLL----VL-SDGQLYVYDLDS 65 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC---EEE----EE-cCCccEEEEchh
Confidence 34578888888 56 8999883332222222 223388888888763 222 22 348999998764
No 406
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.30 E-value=2.5 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=20.7
Q ss_pred cCCCeEEcCCCCEEEEEc--CCeEEEEeCC
Q 033738 9 VSSPPAFSNDVKRLLVCT--SNTVSIFSTS 36 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~--~~~v~~~~~~ 36 (112)
... +.++|+++.|+.++ .+.|+++..+
T Consensus 56 aNG-I~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANG-IAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred Cce-EEEcCCCCEEEEEeccCCeEEEEEec
Confidence 345 78899998888776 6888888754
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=8.8 Score=26.16 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=32.1
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCC
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 61 (112)
-+++.|+ +|.|++||-...+....+++-+.+|..+..+.+|.
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc
Confidence 3566777 89999999633334456777888999999999994
No 408
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.12 E-value=0.18 Score=33.18 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=54.7
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeecccc-CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGH-TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
++|.-++..++... .+.+.+||+++.. ..++... ...-.-..|++... ..+.+...+.+.+++....+.
T Consensus 80 m~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~~s~sll~wsKg~~-------el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 80 MAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGTSSKSLLAWSKGTP-------ELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred hhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCcchHHHHhhccCCc-------cccccccccceEEEeccchhh
Confidence 67777776554443 6889999987643 2333221 11112356777663 344566788899998877665
Q ss_pred EEEEecCC-CEEEEEEcCCCcE
Q 033738 90 LKTIDVKF-PIFSMVRGKKGFA 110 (112)
Q Consensus 90 ~~~~~~~~-~v~~~~~~~~~~~ 110 (112)
+....-|. .+.++++.+.+..
T Consensus 152 iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 152 IIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred hhhhcccccceeEEEeccccee
Confidence 54444233 7777888777654
No 409
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.89 E-value=7.2 Score=24.24 Aligned_cols=81 Identities=10% Similarity=0.059 Sum_probs=43.0
Q ss_pred CCEEEEEcCCeEEEEeCCCCceeeeccc--cCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC-CceEEEE-e
Q 033738 19 VKRLLVCTSNTVSIFSTSTGLQISSLEG--HTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST-PELLKTI-D 94 (112)
Q Consensus 19 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~-~ 94 (112)
+..++.+.++.+.+|++...+.+..... ....+.++... ++ +++.+.....+.++..+. +..+..+ +
T Consensus 98 ~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-------~I~vgD~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 98 NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-------YILVGDAMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-------EEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--cc-------EEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence 4457667679999999876652222211 22244555443 42 556777777777764433 2222222 2
Q ss_pred c--CCCEEEEEEcCCC
Q 033738 95 V--KFPIFSMVRGKKG 108 (112)
Q Consensus 95 ~--~~~v~~~~~~~~~ 108 (112)
. ..++.++.+-+++
T Consensus 169 d~~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 169 DYQPRWVTAAEFLVDE 184 (321)
T ss_dssp ESS-BEEEEEEEE-SS
T ss_pred cCCCccEEEEEEecCC
Confidence 2 2267777776444
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.65 E-value=11 Score=26.10 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=38.8
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCC--CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTST--GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
+.|+|....|+.-. |-.| +.++.. .+...-+ ...+.|.|.+|.+||. + ++++.+..=.-++||-..
T Consensus 118 CVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~---R---LVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ---R---LVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ccccCCCceEEEEecCceeE-eeeeeeCCceEEEec-cCCceEEEEEecCcCC---E---EEEEeCCeEEEEEecCch
Confidence 67888887776554 3222 223322 2222233 3567799999999995 2 334555555677888553
No 411
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=84.31 E-value=7.9 Score=24.26 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=46.9
Q ss_pred eEEcCCCCEEEEEc--CCeEEEEeCCCCceeeeccccCCceEEE-EEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 13 PAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHTAPVTTV-IVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 13 ~~~~~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
..|.+++..|+... .+.|.-|+..+++ ...+..... +.+. .....+ .++++. .-+++++.+++..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p~~-~~~~~~~d~~g--------~Lv~~~--~g~~~~~~~~~~~ 97 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSPGG-FSSGALIDAGG--------RLIACE--HGVRLLDPDTGGK 97 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECCCC-cccceeecCCC--------eEEEEc--cccEEEeccCCce
Confidence 66788888777776 6889999887664 333332222 2333 333343 222332 3455556555544
Q ss_pred EEEEec---C---CCEEEEEEcCCCcEe
Q 033738 90 LKTIDV---K---FPIFSMVRGKKGFAV 111 (112)
Q Consensus 90 ~~~~~~---~---~~v~~~~~~~~~~~~ 111 (112)
...+.. . ...+.....|+|.+.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~w 125 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIW 125 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEE
Confidence 222221 1 145566777777754
No 412
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.20 E-value=1.8 Score=16.66 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=17.7
Q ss_pred EEeeecCCcEEEEeCCCCceEEE
Q 033738 70 CWTASLDETIKYWDFSTPELLKT 92 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~~~~~~~~~ 92 (112)
++.++.++.+..+|.++|+.+..
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEE
Confidence 44667789999999988877654
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.94 E-value=2.1 Score=31.55 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=54.4
Q ss_pred eEEcCCCCEEEEEc---CCeEEEEeCCCCcee-----eec------cccCCceEEEEEecCCCCccceeEEEEeeecCCc
Q 033738 13 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQI-----SSL------EGHTAPVTTVIVVPASTPATKILSYCWTASLDET 78 (112)
Q Consensus 13 ~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (112)
+...+|+...++.. +..|..||+...... .-+ .....-..++.|.|.-. .-.+.+..|+.
T Consensus 106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp------~n~av~l~dls 179 (1405)
T KOG3630|consen 106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP------LNSAVDLSDLS 179 (1405)
T ss_pred EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc------chhhhhccccc
Confidence 44566665544332 357889998653211 111 11222335778888754 23456777888
Q ss_pred EEEEeCCCC-ceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 79 IKYWDFSTP-ELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 79 i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
|++..+... .....++.....++++|+|.|+.++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~ 214 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLF 214 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceee
Confidence 888765432 2233344445889999999987653
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.33 E-value=7.7 Score=24.28 Aligned_cols=59 Identities=14% Similarity=0.012 Sum_probs=34.7
Q ss_pred cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecCC--CEEEEEEcCCCcE
Q 033738 45 EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVKF--PIFSMVRGKKGFA 110 (112)
Q Consensus 45 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 110 (112)
.+....+.++.|+|+.+ .+.+......--++-..+|..+.+++... ....+.|..+|++
T Consensus 82 ~g~~~nvS~LTynp~~r-------tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f 142 (316)
T COG3204 82 LGETANVSSLTYNPDTR-------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF 142 (316)
T ss_pred ccccccccceeeCCCcc-------eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE
Confidence 34445589999999985 33344444444455445588877776443 4444555544443
No 415
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.21 E-value=11 Score=25.10 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=35.6
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCce--eeecc-----ccCCceEEEEEecCC
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ--ISSLE-----GHTAPVTTVIVVPAS 60 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 60 (112)
.-.. ++|.|||+.|++-. .|.|++++...+.. ...+. ..++....++++|+-
T Consensus 31 ~Pw~-maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWA-LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceE-EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3444 89999999888887 69999987654421 11111 135667899999884
No 416
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.24 E-value=9.7 Score=23.74 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=29.4
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeecccc
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGH 47 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~ 47 (112)
+.+ +...++|++|++.. -..|.+.+-++++.+-.+.+.
T Consensus 146 iNs-V~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INS-VDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eee-eeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 454 66678889998887 589999998888877776544
No 417
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.77 E-value=2.7 Score=17.06 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=21.6
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCC
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
.++.++.++-.|.++|+.+..+....
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45889999999999999988876543
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.25 E-value=8.6 Score=28.75 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=48.0
Q ss_pred eEEcCCC--CEEEEEcCCeEEEEeCCCCc-eeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCce
Q 033738 13 PAFSNDV--KRLLVCTSNTVSIFSTSTGL-QISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 13 ~~~~~~~--~~l~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 89 (112)
+.|.|.- +.++.-.|..|++.-+.... ....++ -....++++|+|.|. .++.+-..|++.-|... .+.
T Consensus 161 ~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGK-------Ql~iG~nnGt~vQy~P~-lei 231 (1405)
T KOG3630|consen 161 NVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGK-------QLFIGRNNGTEVQYEPS-LEI 231 (1405)
T ss_pred ccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccc-------eeeEecCCCeEEEeecc-cce
Confidence 5666643 22223336777766543221 112222 345578999999995 44577778888877543 222
Q ss_pred EEEEec-----CCCEEEEEEcCCCc
Q 033738 90 LKTIDV-----KFPIFSMVRGKKGF 109 (112)
Q Consensus 90 ~~~~~~-----~~~v~~~~~~~~~~ 109 (112)
...+.. ...|.++.|-....
T Consensus 232 k~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 232 KSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred eecccCCCcCCCcceeEEEEeccee
Confidence 222221 12677777765443
No 419
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.93 E-value=8.7 Score=27.61 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=38.3
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
.+.. +.-+|.|+.++.+. |+++.+++.........+. ...+-..+.|...| +++..+|+..--|.
T Consensus 16 ~~~a-iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg---------l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTA-IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG---------LVTATSDRRALAWK 81 (1636)
T ss_pred eeee-eeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc---------eEEEeccchhheee
Confidence 3444 66679999999998 9999999976543322222 11222334444433 23555666665564
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=79.70 E-value=2.4 Score=30.57 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEE-----------EEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 18 DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTV-----------IVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 18 ~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
+..++.++- ++.+++...+.... ..+.+|..++..+ ..+|||. .++++..||.+++|.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-------v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-------VFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCc-------EEEEeecCCccceeee
Confidence 444555554 67887776654321 3333343333222 4788984 7778999998888864
No 421
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.18 E-value=22 Score=25.84 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCCcCCCeEEcCCCCE-EEEEcCCeEEEEeCCCCce-eeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 6 RSYVSSPPAFSNDVKR-LLVCTSNTVSIFSTSTGLQ-ISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 6 ~~~v~~~~~~~~~~~~-l~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
.++|++ +.+..+++. +..++-..|.+|.+....+ ...+..++....|..+++... -..++.+..+.+|+
T Consensus 171 ~~pITg-L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~--------qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 171 KEPITG-LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY--------QFICAGSEFLYFYD 241 (933)
T ss_pred CCCcee-eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc--------cEEEecCceEEEEc
Confidence 467887 999888876 3344467788888773221 344666777788888877652 12345566888998
Q ss_pred CCCCceEEEEe
Q 033738 84 FSTPELLKTID 94 (112)
Q Consensus 84 ~~~~~~~~~~~ 94 (112)
.....+-.++.
T Consensus 242 sd~~~~cfaf~ 252 (933)
T KOG2114|consen 242 SDGRGPCFAFE 252 (933)
T ss_pred CCCcceeeeec
Confidence 76544333443
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=78.69 E-value=20 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=26.4
Q ss_pred eecCCcEEEEeCCCCceEEEEec--CCCEEEEEEc--CCCcEe
Q 033738 73 ASLDETIKYWDFSTPELLKTIDV--KFPIFSMVRG--KKGFAV 111 (112)
Q Consensus 73 ~~~d~~i~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~~~~ 111 (112)
......+.+||.+.+.....-.. +..|..+.|. |+|+.+
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsi 89 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSI 89 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEE
Confidence 44456899999998875444333 5588999885 565543
No 423
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.31 E-value=15 Score=23.53 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=43.3
Q ss_pred eEEcCCCCEEEEEc---CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC-CCc
Q 033738 13 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS-TPE 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~ 88 (112)
..+++||++++... -.+|.+.|+..++.+..+.... |.-.-|.++ .-+.+-+.||.+.-..+. .|+
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~------~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGN------RGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEET------TEEEEEETTSCEEEEEETSTSS
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCC------CceEEEecCCceEEEEECCCCC
Confidence 67899999888775 4889999999887766665322 222223332 134477778887777766 344
Q ss_pred eE
Q 033738 89 LL 90 (112)
Q Consensus 89 ~~ 90 (112)
..
T Consensus 170 ~~ 171 (342)
T PF06433_consen 170 EA 171 (342)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.53 E-value=14 Score=22.74 Aligned_cols=82 Identities=11% Similarity=-0.026 Sum_probs=46.4
Q ss_pred eEEcCCCCEEEEEc-C--CeEEEEeCCCCceeeeccccCCc-eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738 13 PAFSNDVKRLLVCT-S--NTVSIFSTSTGLQISSLEGHTAP-VTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE 88 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 88 (112)
+.+..+|.++-+.+ . ..++.+|+.+++......-.... --.++...+. ++.-.-.++...+||..+-+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~--------l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK--------LYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE--------EEEEESSSSEEEEEETTTTE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE--------EEEEEecCCeEEEEccccce
Confidence 56666676666665 3 58999999998765443322111 1244444332 33344556788888888777
Q ss_pred eEEEEecCCCEEEE
Q 033738 89 LLKTIDVKFPIFSM 102 (112)
Q Consensus 89 ~~~~~~~~~~v~~~ 102 (112)
.+..+.....=+.+
T Consensus 122 ~~~~~~y~~EGWGL 135 (264)
T PF05096_consen 122 KIGTFPYPGEGWGL 135 (264)
T ss_dssp EEEEEE-SSS--EE
T ss_pred EEEEEecCCcceEE
Confidence 77776655433333
No 425
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=77.50 E-value=19 Score=24.14 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=40.9
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeeccccCC------ceE--EEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTA------PVT--TVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL 90 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 90 (112)
..++.++ ++.+.-+|.++++.+-.+..... .+. .+.....+ .++.++.++.++-+|.++|+.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~--------~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR--------KVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC--------eEEEecCCCeEEEEECCCCCEe
Confidence 4455555 79999999998876655433221 000 11111112 3345667899999999999887
Q ss_pred EEEec
Q 033738 91 KTIDV 95 (112)
Q Consensus 91 ~~~~~ 95 (112)
.....
T Consensus 134 W~~~~ 138 (488)
T cd00216 134 WKFGN 138 (488)
T ss_pred eeecC
Confidence 66543
No 426
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=75.69 E-value=21 Score=23.85 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=44.2
Q ss_pred cCCCCEEEEE-c--C----CeEEEEeCCCCceeeeccccCC---ceEEEEEecCCCCccceeEEEEeeec----------
Q 033738 16 SNDVKRLLVC-T--S----NTVSIFSTSTGLQISSLEGHTA---PVTTVIVVPASTPATKILSYCWTASL---------- 75 (112)
Q Consensus 16 ~~~~~~l~~~-~--~----~~v~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~---------- 75 (112)
-|+|+.++++ + + |-+.++|-++.+.......... .-..+.|.|..+ .++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n-------vMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN-------VMISSEWGAPSMFEKGF 210 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT-------EEEE-B---HHHHTT--
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC-------EEEEeccCChhhcccCC
Confidence 4778877765 2 2 6788888887776666654322 234677788764 3334432
Q ss_pred ----------CCcEEEEeCCCCceEEEEecCC---CEEEEEEcC
Q 033738 76 ----------DETIKYWDFSTPELLKTIDVKF---PIFSMVRGK 106 (112)
Q Consensus 76 ----------d~~i~~~~~~~~~~~~~~~~~~---~v~~~~~~~ 106 (112)
...+.+||..+.+.++++.... ....++|..
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH 254 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH 254 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S
T ss_pred ChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecC
Confidence 3689999999999999887653 344555543
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=74.61 E-value=19 Score=22.81 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=46.9
Q ss_pred CcCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 8 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
.+.. +.+.|++..++++..|.+..-.-..++.-... ......+..+.+.+++. .++ .+..|.+++-....
T Consensus 174 ~~~~-i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-------~~~-vg~~G~~~~~s~d~ 244 (334)
T PRK13684 174 VVRN-LRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-------LWM-LARGGQIRFNDPDD 244 (334)
T ss_pred eEEE-EEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-------EEE-EecCCEEEEccCCC
Confidence 4455 77788887777777666554211112211111 22345567888888874 332 34456655422333
Q ss_pred CceEEEEecC-----CCEEEEEEcCCCcE
Q 033738 87 PELLKTIDVK-----FPIFSMVRGKKGFA 110 (112)
Q Consensus 87 ~~~~~~~~~~-----~~v~~~~~~~~~~~ 110 (112)
|..-.....+ ..+.++.+.|++..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCE
Confidence 3322221111 14566677766553
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.54 E-value=16 Score=21.80 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=33.6
Q ss_pred EcCCC-CEE-EEEcCCeEEEEeCCCC--ceeeeccccCCceEEEEEecCCCCccceeEEEEeee
Q 033738 15 FSNDV-KRL-LVCTSNTVSIFSTSTG--LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS 74 (112)
Q Consensus 15 ~~~~~-~~l-~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 74 (112)
+...| +.| ++.+.+.|.+|++... +....+.. -+.|..+.++..|+ |+++--
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GD-------YlvTlE 78 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGD-------YLVTLE 78 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccc-------eEEEEE
Confidence 33334 444 4445788999998732 33445543 37788999999985 666654
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.19 E-value=16 Score=21.76 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.5
Q ss_pred ecCCcEEEEeCCC--CceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 74 SLDETIKYWDFST--PELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 74 ~~d~~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
.....|.+|++.+ ......+..-+.|..+.++..|+++.
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv 75 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV 75 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence 4456799999883 34556666666899999999999873
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.55 E-value=20 Score=22.59 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=34.5
Q ss_pred EEEEecCCCCccceeEEEEeeecC------CcEEEEeCCCCceEEEEe----------------cCCCEEEEEEcCCCcE
Q 033738 53 TVIVVPASTPATKILSYCWTASLD------ETIKYWDFSTPELLKTID----------------VKFPIFSMVRGKKGFA 110 (112)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~ 110 (112)
.+++.+++. ++++.-.+ ..|+.++.. |+....+. ......+++++|+|+.
T Consensus 89 gi~~~~~g~-------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 89 GIAVPPDGS-------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred HeEEecCCC-------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCE
Confidence 677766663 66676666 788888866 65544331 1126789999999985
Q ss_pred eC
Q 033738 111 VF 112 (112)
Q Consensus 111 ~~ 112 (112)
+|
T Consensus 161 l~ 162 (326)
T PF13449_consen 161 LF 162 (326)
T ss_pred EE
Confidence 43
No 431
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.58 E-value=37 Score=24.81 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=55.7
Q ss_pred CcCCCeEEcCCCCEEEEEc-CCeEEEEeCCC----CceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 8 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTST----GLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
.+.. ++++.+-+.+++|- +|.|..+.-+- +....-......+|+.+++..++. .. + +++| -..|.+|
T Consensus 127 p~s~-l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~--s~-l-Fv~T---t~~V~~y 198 (933)
T KOG2114|consen 127 PASS-LAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK--SV-L-FVAT---TEQVMLY 198 (933)
T ss_pred cceE-EEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc--ee-E-EEEe---cceeEEE
Confidence 3444 88888888888887 89988875331 111222223467899999988875 11 1 2222 2467777
Q ss_pred eCCCCce-EEEEecCC-CEEEEEEcCCCc
Q 033738 83 DFSTPEL-LKTIDVKF-PIFSMVRGKKGF 109 (112)
Q Consensus 83 ~~~~~~~-~~~~~~~~-~v~~~~~~~~~~ 109 (112)
.+....+ ..+...+. ++.|..+++...
T Consensus 199 ~l~gr~p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 199 SLSGRTPSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred EecCCCcceeeeccCCccceeeecCCCCc
Confidence 7763332 33344444 677777766543
No 432
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=70.87 E-value=29 Score=23.29 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=23.3
Q ss_pred EEEeeecCCcEEEEeCCCCceEEEEecCC
Q 033738 69 YCWTASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
.++.++.|+.++.+|.++|+.+...+...
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 45567789999999999999887776544
No 433
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=69.98 E-value=21 Score=21.45 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=51.3
Q ss_pred cCCCeEEcCCCCEEEEEcCCeEEEEeCCCCceeee--------------ccccCCceEEEE-E-ecCCCCccceeEEEEe
Q 033738 9 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISS--------------LEGHTAPVTTVI-V-VPASTPATKILSYCWT 72 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~v~~~~-~-~~~~~~~~~~~~~~~~ 72 (112)
|.. +...++-+.++.-+|+.+.++++........ .......+...+ - ...+. ..+.
T Consensus 38 I~q-l~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-------~~L~ 109 (275)
T PF00780_consen 38 ITQ-LSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-------RRLC 109 (275)
T ss_pred EEE-EEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccc-------eEEE
Confidence 555 7778888888888889999999875432220 011222333333 1 11221 1223
Q ss_pred eecCCcEEEEeCCCC-----ceEEEEecCCCEEEEEEcC
Q 033738 73 ASLDETIKYWDFSTP-----ELLKTIDVKFPIFSMVRGK 106 (112)
Q Consensus 73 ~~~d~~i~~~~~~~~-----~~~~~~~~~~~v~~~~~~~ 106 (112)
......+.+|..... ...+.+..+..+.++.|.+
T Consensus 110 va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~ 148 (275)
T PF00780_consen 110 VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG 148 (275)
T ss_pred EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence 333447777765432 4556666677788888773
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.21 E-value=26 Score=22.08 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceE-EEEecCCCEEEEEEcCCCcEe
Q 033738 48 TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELL-KTIDVKFPIFSMVRGKKGFAV 111 (112)
Q Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 111 (112)
.+.+..+.-++++. +++.+.....+.-||.-...-. ........+.++.|.|++...
T Consensus 144 ~gs~~~~~r~~dG~-------~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw 201 (302)
T PF14870_consen 144 SGSINDITRSSDGR-------YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLW 201 (302)
T ss_dssp ---EEEEEE-TTS--------EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EE
T ss_pred cceeEeEEECCCCc-------EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEE
Confidence 45567777788884 5555544444556664322222 222233489999999998753
No 435
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.48 E-value=7.7 Score=15.76 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=13.0
Q ss_pred CCCEEEEEc-CCeEEEEeCCC
Q 033738 18 DVKRLLVCT-SNTVSIFSTST 37 (112)
Q Consensus 18 ~~~~l~~~~-~~~v~~~~~~~ 37 (112)
.+..++.++ |+.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 345666666 89999888753
No 436
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=66.11 E-value=2.1 Score=15.68 Aligned_cols=8 Identities=13% Similarity=-0.027 Sum_probs=5.2
Q ss_pred EEcCCCcE
Q 033738 103 VRGKKGFA 110 (112)
Q Consensus 103 ~~~~~~~~ 110 (112)
.|+|+|+.
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 36777764
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=62.79 E-value=49 Score=22.96 Aligned_cols=43 Identities=7% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCC
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 61 (112)
.-+++.++ .|.|++||--..+....+++-+..+..+..+.+|.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk 616 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCc
Confidence 35777777 69999999554444456666677788888888884
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.73 E-value=24 Score=25.32 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=34.7
Q ss_pred eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCC
Q 033738 29 TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFS 85 (112)
Q Consensus 29 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 85 (112)
.|++++.. |..+..+....+.+-.+.|+.+.. ++....+|+++++++.
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee--------LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE--------LICVQKDGTVHVYGLL 112 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCce--------EEEEeccceEEEeecc
Confidence 36677654 655666555555778899998873 4478899999999875
No 439
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=61.97 E-value=9.1 Score=14.32 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=4.4
Q ss_pred EEEEEecCC
Q 033738 52 TTVIVVPAS 60 (112)
Q Consensus 52 ~~~~~~~~~ 60 (112)
..+++.+++
T Consensus 5 ~gvav~~~g 13 (28)
T PF01436_consen 5 HGVAVDSDG 13 (28)
T ss_dssp EEEEEETTS
T ss_pred cEEEEeCCC
Confidence 344555555
No 440
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=60.30 E-value=42 Score=22.99 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=13.5
Q ss_pred CEEEEEEcCCCcEeC
Q 033738 98 PIFSMVRGKKGFAVF 112 (112)
Q Consensus 98 ~v~~~~~~~~~~~~~ 112 (112)
.+..++|+||++.+|
T Consensus 503 E~tG~~fspDg~tlF 517 (524)
T PF05787_consen 503 EITGPCFSPDGRTLF 517 (524)
T ss_pred ccccceECCCCCEEE
Confidence 789999999999876
No 441
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=58.84 E-value=12 Score=16.93 Aligned_cols=14 Identities=29% Similarity=0.145 Sum_probs=11.9
Q ss_pred eEEcCCCCEEEEEc
Q 033738 13 PAFSNDVKRLLVCT 26 (112)
Q Consensus 13 ~~~~~~~~~l~~~~ 26 (112)
+.+.|||+.++.|.
T Consensus 6 ~~~q~DGkIlv~G~ 19 (55)
T TIGR02608 6 VAVQSDGKILVAGY 19 (55)
T ss_pred EEECCCCcEEEEEE
Confidence 78889999998885
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.73 E-value=29 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=22.5
Q ss_pred CCcCCCeEEcCCC---CEEEEE-cCCeEEEEeCCCC
Q 033738 7 SYVSSPPAFSNDV---KRLLVC-TSNTVSIFSTSTG 38 (112)
Q Consensus 7 ~~v~~~~~~~~~~---~~l~~~-~~~~v~~~~~~~~ 38 (112)
..|.. +.|+|.+ ..|+.- +|+.+++||+...
T Consensus 147 ~~i~q-v~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQ-VRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEE-EEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 45665 8999964 555554 5999999998643
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.21 E-value=52 Score=21.16 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=29.3
Q ss_pred cCCCeEEcCCCCEEEEEc------------C-CeEEEEeCCC--Cc--eeeeccccCCceEEEEEecCC
Q 033738 9 VSSPPAFSNDVKRLLVCT------------S-NTVSIFSTST--GL--QISSLEGHTAPVTTVIVVPAS 60 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~------------~-~~v~~~~~~~--~~--~~~~~~~~~~~v~~~~~~~~~ 60 (112)
... ++|.++|+.+++.. . ..|.+++-.. ++ ....+.........+++.+++
T Consensus 16 P~~-ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G 83 (367)
T TIGR02604 16 PIA-VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG 83 (367)
T ss_pred Cce-eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC
Confidence 344 88999999887652 1 2676665432 32 123333333344677887776
No 444
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=54.76 E-value=50 Score=20.59 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=33.1
Q ss_pred CeEEEEeCCCC----ceeeec--cccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc-eEEEEe
Q 033738 28 NTVSIFSTSTG----LQISSL--EGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE-LLKTID 94 (112)
Q Consensus 28 ~~v~~~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~ 94 (112)
|.+.++++... ..+..+ ....++|.+++-. .+ .+ .++....+.+|++...+ ......
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~--------~l-v~~~g~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG--------RL-VVAVGNKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT--------EE-EEEETTEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC--------EE-EEeecCEEEEEEccCcccchhhhe
Confidence 67999998773 123222 2346778888765 33 22 22334789999888776 444433
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.63 E-value=48 Score=20.06 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=16.6
Q ss_pred CCEEEEEc---CCeEEEEeCCCCceeee
Q 033738 19 VKRLLVCT---SNTVSIFSTSTGLQISS 43 (112)
Q Consensus 19 ~~~l~~~~---~~~v~~~~~~~~~~~~~ 43 (112)
|..+.+.+ ...|++||+.+++.+..
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s 83 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFS 83 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEE
Confidence 34444444 36899999998876543
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=53.54 E-value=14 Score=25.12 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=35.4
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCC
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAS 60 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 60 (112)
+.|++.+..++.+. .+.+.+++..+.+.+-..-.|..++.+.++.+.+
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 45777777777777 6899999887665444433477788899998877
No 447
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.53 E-value=56 Score=20.73 Aligned_cols=91 Identities=18% Similarity=0.083 Sum_probs=46.0
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
++-+|||..-+++. .+.+--.|..+++....-.+....-..+..-|++. ..++-+.. -|.-.|-++.+. .
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-------~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-------AWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-------eeEecCcc-eeEEecCcccce-E
Confidence 45566665555554 45555556666654332223333445667777774 22233333 233335444332 2
Q ss_pred EEec-----CCCEEEEEEcCCCcEeC
Q 033738 92 TIDV-----KFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 92 ~~~~-----~~~v~~~~~~~~~~~~~ 112 (112)
.+.. ....+...|.+.|+..|
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWF 163 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWF 163 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEE
Confidence 2221 12677778888887643
No 448
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=52.75 E-value=17 Score=14.48 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=18.9
Q ss_pred CcCCCeEEcCCCCEEEEEc--CCeEEEEeCC
Q 033738 8 YVSSPPAFSNDVKRLLVCT--SNTVSIFSTS 36 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~ 36 (112)
.... +++++.++.++... .+.|...+++
T Consensus 10 ~~~~-la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 10 HPNG-LAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CcCE-EEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 3444 88888888887665 4666666654
No 449
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=51.62 E-value=16 Score=13.92 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=10.4
Q ss_pred EEEeeecCCcEEEE
Q 033738 69 YCWTASLDETIKYW 82 (112)
Q Consensus 69 ~~~~~~~d~~i~~~ 82 (112)
+++.+.+.+.+|+|
T Consensus 13 ~vavaTS~~~lRif 26 (27)
T PF12341_consen 13 WVAVATSAGYLRIF 26 (27)
T ss_pred EEEEEeCCCeEEec
Confidence 56677777888876
No 450
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.38 E-value=97 Score=22.58 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=21.6
Q ss_pred eeecCCcEEEEeCCCCceEEEEecCC
Q 033738 72 TASLDETIKYWDFSTPELLKTIDVKF 97 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~~~~~ 97 (112)
.++.|+.++-+|.++|+.+.......
T Consensus 697 ~gt~d~~l~A~D~~tGk~lW~~~l~~ 722 (764)
T TIGR03074 697 GATQDNYLRAYDLSTGKELWKARLPA 722 (764)
T ss_pred EeCCCCEEEEEECCCCceeeEeeCCC
Confidence 46789999999999999887776554
No 451
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=49.10 E-value=74 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=21.8
Q ss_pred cCCCeEEcCCCCEEEEEc-CCeEEEEeCCC
Q 033738 9 VSSPPAFSNDVKRLLVCT-SNTVSIFSTST 37 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~ 37 (112)
+.. ++..+..+.+++.. ++.|.+|++..
T Consensus 192 I~~-v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQ-VAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEE-EEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eee-EEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 665 88888888888887 89999999974
No 452
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.09 E-value=64 Score=20.16 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=34.7
Q ss_pred CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeee------cCCcEEEEeCCCCce
Q 033738 28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTAS------LDETIKYWDFSTPEL 89 (112)
Q Consensus 28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~d~~i~~~~~~~~~~ 89 (112)
..+.+||....+-...-..-.+.|..+.|..+.. +++.|. ....+..||..+...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-------Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-------LLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-------EEEEEeeEECCCCceeEEEEecCCCee
Confidence 5789999876543333333567799999975442 333442 356688888876543
No 453
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=48.83 E-value=65 Score=20.16 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCeEEEEeCCCC-ceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeC
Q 033738 18 DVKRLLVCTSNTVSIFSTSTG-LQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDF 84 (112)
Q Consensus 18 ~~~~l~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 84 (112)
++++++.|++.-+.+.+.... .....+. +...|+++...+... + .++-++..+.++.+++
T Consensus 12 ~~~~lL~GTe~Gly~~~~~~~~~~~~kl~-~~~~v~q~~v~~~~~----l--Li~Lsgk~~~L~~~~L 72 (302)
T smart00036 12 DGKWLLVGTEEGLYVLNISDQPGTLEKLI-GRRSVTQIWVLEENN----V--LLMISGKKPQLYSHPL 72 (302)
T ss_pred CCcEEEEEeCCceEEEEcccCCCCeEEec-CcCceEEEEEEhhhC----E--EEEEeCCcceEEEEEH
Confidence 336888888655555565532 2233332 345788998887764 1 2334455566998886
No 454
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=47.41 E-value=95 Score=21.63 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=13.3
Q ss_pred EEEeeecCC-----cEEEEeCCCCceE
Q 033738 69 YCWTASLDE-----TIKYWDFSTPELL 90 (112)
Q Consensus 69 ~~~~~~~d~-----~i~~~~~~~~~~~ 90 (112)
+++.||.|+ .+..+|..+.+..
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCcee
Confidence 566777665 2566777665443
No 455
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=43.82 E-value=56 Score=24.00 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCC
Q 033738 51 VTTVIVVPASTPATKILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 51 v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
++.+.-+|.+. -++.+..||.+++++...
T Consensus 17 ~~aiqshp~~~-------s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 17 TTAIQSHPGGQ-------SFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeecCCCc-------eEEEEecCCcEEEEeecc
Confidence 45666678774 566888999999988643
No 456
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=43.60 E-value=1.4e+02 Score=22.40 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=35.4
Q ss_pred EEEEEcC--CeEEEEeCCCCceeeec-cccCCceEEEEEecCCCCccceeEEEEeee---cCCcEEEEeCCC
Q 033738 21 RLLVCTS--NTVSIFSTSTGLQISSL-EGHTAPVTTVIVVPASTPATKILSYCWTAS---LDETIKYWDFST 86 (112)
Q Consensus 21 ~l~~~~~--~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~ 86 (112)
.|+...+ +.+.+.|..... .+.+ ..+..++..-+||||++ ++. |..+-- ....|++-|+.+
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n-~~~ve~~~~~~i~sP~~SPDG~---~vA-Y~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGA-SRAVEIEDTISVYHPDISPDGK---KVA-FCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCC-ceEEEecCCCceecCcCCCCCC---EEE-EEEeecCCCCCceEEEEehhc
Confidence 3444442 577777876544 3333 34566778889999994 343 422211 234588888765
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.37 E-value=1.6e+02 Score=23.07 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=41.7
Q ss_pred CcCCCeEEcCCCCEEEEEcCCeEEEEe--CCCC---c-e----------------eeecc-ccCCceEEEEEecCCCCcc
Q 033738 8 YVSSPPAFSNDVKRLLVCTSNTVSIFS--TSTG---L-Q----------------ISSLE-GHTAPVTTVIVVPASTPAT 64 (112)
Q Consensus 8 ~v~~~~~~~~~~~~l~~~~~~~v~~~~--~~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~ 64 (112)
.|.+ +....+|+.+.+|.|+.++..- ...+ + + +-+++ .+..+|..++....-.
T Consensus 180 ~V~~-I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~--- 255 (1311)
T KOG1900|consen 180 SVNC-ITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN--- 255 (1311)
T ss_pred eEEE-EEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc---
Confidence 4555 6656788888888776544322 2211 1 0 11122 3455777777754432
Q ss_pred ceeEEEEeeecCCcEEEEeCCC
Q 033738 65 KILSYCWTASLDETIKYWDFST 86 (112)
Q Consensus 65 ~~~~~~~~~~~d~~i~~~~~~~ 86 (112)
++.+-+..+.++.||+..
T Consensus 256 ----IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ----ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ----eeeeeccCceEEEEEccC
Confidence 556777889999999865
No 458
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=42.17 E-value=31 Score=14.49 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=12.9
Q ss_pred EcCCCCEEEEEc-C------CeEEEEeCCCCc
Q 033738 15 FSNDVKRLLVCT-S------NTVSIFSTSTGL 39 (112)
Q Consensus 15 ~~~~~~~l~~~~-~------~~v~~~~~~~~~ 39 (112)
..++++.++.|+ + +.+.+||+++.+
T Consensus 9 ~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 9 SIGDNSIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp EE-TTEEEEE--EEE-TEE---EEEEETTTTE
T ss_pred EEeCCeEEEECCCCCCCcccCCEEEEECCCCE
Confidence 335566777776 2 367788877654
No 459
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=41.02 E-value=24 Score=18.81 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=13.0
Q ss_pred EEcCCCCEEEEEc-CCeEEEEe
Q 033738 14 AFSNDVKRLLVCT-SNTVSIFS 34 (112)
Q Consensus 14 ~~~~~~~~l~~~~-~~~v~~~~ 34 (112)
.|||||++|...- |..+.-.|
T Consensus 74 vfSpDG~~lSFTYNDhVmhe~d 95 (122)
T PF12566_consen 74 VFSPDGSWLSFTYNDHVMHELD 95 (122)
T ss_pred EECCCCCEEEEEecchhhcccc
Confidence 5788888776554 55554443
No 460
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.77 E-value=1.4e+02 Score=22.60 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.0
Q ss_pred EEEeeecCCcEEEEeCCCCce
Q 033738 69 YCWTASLDETIKYWDFSTPEL 89 (112)
Q Consensus 69 ~~~~~~~d~~i~~~~~~~~~~ 89 (112)
.++++-.|+.+..||...+..
T Consensus 248 ~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 248 HFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred eEEEEEecCCEEeeecCCCce
Confidence 677999999999999988755
No 461
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=40.38 E-value=1.4e+02 Score=21.49 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=32.5
Q ss_pred CCeEEcCCCCEEEEEcC------CeEEEEeCCCCceeeeccccCCceEEEEEecCCC
Q 033738 11 SPPAFSNDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPAST 61 (112)
Q Consensus 11 ~~~~~~~~~~~l~~~~~------~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 61 (112)
..++.|||+++++.+-| -.+++.|+.+++..-... .+.....+|.+++.
T Consensus 132 g~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~ 186 (682)
T COG1770 132 GAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGK 186 (682)
T ss_pred eeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCC
Confidence 34788999999986642 368899998886442221 12234667887774
No 462
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=39.18 E-value=95 Score=19.26 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=33.1
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEe--cC-CCCccceeEEEEeeecCCcEEEE
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVV--PA-STPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
..|+.|. ++.|.+.|.+......+..-..-++ .+..+ -+ .+ . .++.+++||.|+..
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devd--y----RI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVD--Y----RIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccc--e----EEEEEeCCCEEEEE
Confidence 5778888 7999999988665555544333333 22211 11 11 1 34477888888764
No 463
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=39.16 E-value=1.8e+02 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738 48 TAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK 96 (112)
Q Consensus 48 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 96 (112)
+..+.|+++.++....++-= +++.++.|++++++.+....++..+...
T Consensus 582 ~~~vac~ai~~~~~g~krsr-fla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSR-FLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred ceeehhhccCCCCcchhhcc-eeeeeccccceeEEEecCcceEEEcccc
Confidence 45677888877652112111 4668889999999988776676666543
No 464
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=37.07 E-value=99 Score=21.75 Aligned_cols=15 Identities=13% Similarity=0.137 Sum_probs=13.1
Q ss_pred CEEEEEEcCCCcEeC
Q 033738 98 PIFSMVRGKKGFAVF 112 (112)
Q Consensus 98 ~v~~~~~~~~~~~~~ 112 (112)
.+..++|+||++.+|
T Consensus 555 E~tG~~FspD~~TlF 569 (616)
T COG3211 555 EFTGPCFSPDGKTLF 569 (616)
T ss_pred eeecceeCCCCceEE
Confidence 788999999998765
No 465
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=37.07 E-value=1.4e+02 Score=20.59 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=38.5
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeeccccCCc-eEEEEEec---CCCCccceeEEEEee----ecCCcEEEEeCCCCceE
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAP-VTTVIVVP---ASTPATKILSYCWTA----SLDETIKYWDFSTPELL 90 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~---~~~~~~~~~~~~~~~----~~d~~i~~~~~~~~~~~ 90 (112)
..++.++ ++.+.-+|.++|+.+-........ -..+.-+| ++. + ++.+. +.++.++-+|.++|+.+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~----V--ivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK----V--ITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE----E--EEeecccccCCCcEEEEEECCCCcee
Confidence 4555666 899999999999876554321100 00111112 231 1 12121 13688999999999877
Q ss_pred EEEe
Q 033738 91 KTID 94 (112)
Q Consensus 91 ~~~~ 94 (112)
-.+.
T Consensus 195 W~~~ 198 (527)
T TIGR03075 195 WRRY 198 (527)
T ss_pred Eecc
Confidence 6543
No 466
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.88 E-value=1.7e+02 Score=21.48 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=42.7
Q ss_pred CCEEEEEc-CCeEEEEeCCCCceeeeccccCCc--------eEEEEEecC--CC-----------CccceeEEEEeeecC
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAP--------VTTVIVVPA--ST-----------PATKILSYCWTASLD 76 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~--~~-----------~~~~~~~~~~~~~~d 76 (112)
+..++.++ ++.|.-.|.++|+.+-++...... ...+.+... +. ... .++.++.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~----rV~~~T~D 269 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR----RIILPTSD 269 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC----EEEEecCC
Confidence 45566666 788998899999877665432211 112222111 00 001 23367779
Q ss_pred CcEEEEeCCCCceEEEEe
Q 033738 77 ETIKYWDFSTPELLKTID 94 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~ 94 (112)
+.+.-.|.++|+....+.
T Consensus 270 g~LiALDA~TGk~~W~fg 287 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFG 287 (764)
T ss_pred CeEEEEECCCCCEEEEec
Confidence 999999999998876553
No 467
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=36.68 E-value=1.3e+02 Score=20.01 Aligned_cols=92 Identities=14% Similarity=-0.091 Sum_probs=50.7
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEec--CCCCccceeEEEEeeecC-------------
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVP--ASTPATKILSYCWTASLD------------- 76 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~d------------- 76 (112)
..++|+.+.++... +..++..|+++.+....+......+....|.. ++ ++++ .+.....|
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~---t~~~-g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC---TKLV-GIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS---SEEE-EEEEEGGG-----SHHHHHHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc---cEEE-EEEEeehhccCccccHHHHHH
Confidence 67889888887665 67888889998765444444455454455543 33 3333 22222111
Q ss_pred ------CcEEEEeCCCCceEEEEecCCCEEEEEEcCCC
Q 033738 77 ------ETIKYWDFSTPELLKTIDVKFPIFSMVRGKKG 108 (112)
Q Consensus 77 ------~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 108 (112)
..|.-.|+.+|+....+....++.-+.|+|..
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred HhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 24555688888877777666677777777754
No 468
>PF13983 YsaB: YsaB-like lipoprotein
Probab=36.48 E-value=33 Score=16.42 Aligned_cols=11 Identities=27% Similarity=0.214 Sum_probs=8.4
Q ss_pred eEEcCCCCEEE
Q 033738 13 PAFSNDVKRLL 23 (112)
Q Consensus 13 ~~~~~~~~~l~ 23 (112)
++|.|||++|-
T Consensus 63 CSFD~dGqFLH 73 (77)
T PF13983_consen 63 CSFDADGQFLH 73 (77)
T ss_pred EeECCCCcEEE
Confidence 67888888774
No 469
>PHA02713 hypothetical protein; Provisional
Probab=35.63 E-value=1.5e+02 Score=20.56 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=12.1
Q ss_pred EEEeeecCC-----cEEEEeCCCCc
Q 033738 69 YCWTASLDE-----TIKYWDFSTPE 88 (112)
Q Consensus 69 ~~~~~~~d~-----~i~~~~~~~~~ 88 (112)
+++.||.++ .+..||..+..
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCe
Confidence 455666543 47778877654
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=35.28 E-value=82 Score=17.42 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=38.2
Q ss_pred eEEcCCCCEEEEEc-CCeEEEEeCCCCc--------eeeeccccCCceEEEEEec---CCCCccceeEEEEeeecCCcEE
Q 033738 13 PAFSNDVKRLLVCT-SNTVSIFSTSTGL--------QISSLEGHTAPVTTVIVVP---ASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
-+|......|++++ .+.|.+.+..... .+..+. -...|++++--+ +.. .-+ + -.+....+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~--~D~---L-liGt~t~ll 76 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDG--RDC---L-LIGTQTSLL 76 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCC--cCE---E-EEeccceEE
Confidence 35666666777777 7999999865321 222222 234566665433 221 112 2 234455788
Q ss_pred EEeCCCCce
Q 033738 81 YWDFSTPEL 89 (112)
Q Consensus 81 ~~~~~~~~~ 89 (112)
.||+.+..-
T Consensus 77 aYDV~~N~d 85 (136)
T PF14781_consen 77 AYDVENNSD 85 (136)
T ss_pred EEEcccCch
Confidence 888775443
No 471
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=35.21 E-value=79 Score=17.19 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=15.0
Q ss_pred eeecCCcEEEEeCCCCceEEEE
Q 033738 72 TASLDETIKYWDFSTPELLKTI 93 (112)
Q Consensus 72 ~~~~d~~i~~~~~~~~~~~~~~ 93 (112)
.....|.+++.|..++..+..+
T Consensus 46 p~~seG~V~l~D~~t~~~ias~ 67 (125)
T cd01211 46 PNNIEGTVKLIDAQSNKVIASF 67 (125)
T ss_pred cCCCCceEEEEcCCCCcEEEEE
Confidence 3446788899888877655444
No 472
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=35.00 E-value=31 Score=12.86 Aligned_cols=11 Identities=45% Similarity=0.948 Sum_probs=7.5
Q ss_pred ecCCcEEEEeC
Q 033738 74 SLDETIKYWDF 84 (112)
Q Consensus 74 ~~d~~i~~~~~ 84 (112)
.+|..|+-||.
T Consensus 12 psdksi~hwdf 22 (28)
T PRK14751 12 PSDKSIYHWDF 22 (28)
T ss_pred CCcCceeeeee
Confidence 34667888875
No 473
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=34.83 E-value=1.2e+02 Score=19.26 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=29.5
Q ss_pred CCEEEEEc-CCeEEEEeCCCCcee---ee-ccccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGLQI---SS-LEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
|.++++.- .+.|....++....+ .. +.....++..+++.|++. ++++...+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-------Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-------LYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-------EEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-------EEEEECCCCeEe
Confidence 34444444 567776666533222 12 223344678888989884 555555666654
No 474
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=34.22 E-value=1.5e+02 Score=20.07 Aligned_cols=54 Identities=15% Similarity=0.429 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCc
Q 033738 28 NTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPE 88 (112)
Q Consensus 28 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 88 (112)
+-|+++|-.+|... |..+|..+.|-....-+.+. +=+.|+..|.-+++-++++.
T Consensus 101 ~GIKI~DEKtGav~-----H~hpV~~ISfIArD~tD~RA--FGyVcG~eG~hkF~aIKTaQ 154 (557)
T KOG3535|consen 101 DGIKILDEKTGAVL-----HNHPVSRISFIARDSTDARA--FGYVCGEEGKHKFYAIKTAQ 154 (557)
T ss_pred cceEEeecccccee-----ccCccceeeeeecccccccc--eeeeecCCCceeEEEEeccc
Confidence 44777787777644 44555555554322111223 33355666888888877654
No 475
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=32.21 E-value=93 Score=17.11 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=8.8
Q ss_pred EEeeecCCcEEEEeCCCC
Q 033738 70 CWTASLDETIKYWDFSTP 87 (112)
Q Consensus 70 ~~~~~~d~~i~~~~~~~~ 87 (112)
++++=.|+.|+.|.+...
T Consensus 26 yl~gKGD~~ir~yEv~~~ 43 (136)
T PF08954_consen 26 YLAGKGDGNIRYYEVSDE 43 (136)
T ss_dssp EEEETT-S-EEEEEE-SS
T ss_pred EEEeccCcEEEEEEEcCC
Confidence 334445667777766554
No 476
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=31.40 E-value=1.5e+02 Score=19.24 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=20.8
Q ss_pred EEEEeCCCCceEEEEecCC---CEEEEEEcCC
Q 033738 79 IKYWDFSTPELLKTIDVKF---PIFSMVRGKK 107 (112)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~---~v~~~~~~~~ 107 (112)
+.+.|+++|..+..++... .+++++.-|.
T Consensus 284 v~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 284 VAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 6677999999888777655 5666666554
No 477
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=29.39 E-value=1.4e+02 Score=18.30 Aligned_cols=74 Identities=12% Similarity=0.010 Sum_probs=44.6
Q ss_pred CCcCCCeEEcCC-CCEEEEEcCCeEEEEeCCCCceeee----cc-ccCCceEEEEEecCCCCccceeEEEEeeecCCcEE
Q 033738 7 SYVSSPPAFSND-VKRLLVCTSNTVSIFSTSTGLQISS----LE-GHTAPVTTVIVVPASTPATKILSYCWTASLDETIK 80 (112)
Q Consensus 7 ~~v~~~~~~~~~-~~~l~~~~~~~v~~~~~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 80 (112)
+.+.. +.+-|. |++...++.+.++..|..++..... +. .-.+....+.|.|.-+ .+-..+.+++-.
T Consensus 27 e~l~G-ID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aD-------RlRvvs~~GqNl 98 (236)
T PF14339_consen 27 ESLVG-IDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAAD-------RLRVVSNTGQNL 98 (236)
T ss_pred CeEEE-EEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccC-------cEEEEccCCcEE
Confidence 45666 888885 5555565689999999998864322 21 1223356888998764 222333445544
Q ss_pred EEeCCCCc
Q 033738 81 YWDFSTPE 88 (112)
Q Consensus 81 ~~~~~~~~ 88 (112)
-.+..+|.
T Consensus 99 R~npdtGa 106 (236)
T PF14339_consen 99 RLNPDTGA 106 (236)
T ss_pred EECCCCCC
Confidence 45666655
No 478
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=29.30 E-value=98 Score=16.46 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=13.2
Q ss_pred CcEEEEeCCCCceEEEEe
Q 033738 77 ETIKYWDFSTPELLKTID 94 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~ 94 (112)
..+.+||+.+|....+..
T Consensus 41 E~V~I~Nv~NG~Rf~TYv 58 (111)
T cd06919 41 EKVLVVNVNNGARFETYV 58 (111)
T ss_pred CEEEEEECCCCcEEEEEE
Confidence 578888888887766553
No 479
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=28.58 E-value=1.1e+02 Score=16.72 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=13.0
Q ss_pred CcEEEEeCCCCceEEEEe
Q 033738 77 ETIKYWDFSTPELLKTID 94 (112)
Q Consensus 77 ~~i~~~~~~~~~~~~~~~ 94 (112)
..+.+||+.+|....+..
T Consensus 42 E~V~V~Nv~NG~Rf~TYv 59 (126)
T PRK05449 42 EKVQIVNVNNGARFETYV 59 (126)
T ss_pred CEEEEEECCCCcEEEEEE
Confidence 578888888887766553
No 480
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=28.58 E-value=83 Score=22.57 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=25.5
Q ss_pred ccCCCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeC
Q 033738 2 IRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFST 35 (112)
Q Consensus 2 ~~~h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~ 35 (112)
|+.|...+.. ++|.+.|..+++++ ...|.++.+
T Consensus 311 fkAhkspiSa-LcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 311 FKAHKSPISA-LCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred eeeecCcccc-cccccCceEEEEEeeccceeeeEEe
Confidence 5678889987 99999999999887 355555543
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=25.96 E-value=2.3e+02 Score=19.68 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=20.1
Q ss_pred CCcCCCeEEcCCCCEEEEEcCCeEEEEeCC
Q 033738 7 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTS 36 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~~~~v~~~~~~ 36 (112)
..+.. +-..|||+.++.-+...+.++++.
T Consensus 221 ~~v~q-llL~Pdg~~LYv~~g~~~~v~~L~ 249 (733)
T COG4590 221 SDVSQ-LLLTPDGKTLYVRTGSELVVALLD 249 (733)
T ss_pred cchHh-hEECCCCCEEEEecCCeEEEEeec
Confidence 34554 677889988887766666666654
No 482
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=25.60 E-value=89 Score=20.79 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=16.7
Q ss_pred CCCEEEEEc-CCeEEEEeCCC
Q 033738 18 DVKRLLVCT-SNTVSIFSTST 37 (112)
Q Consensus 18 ~~~~l~~~~-~~~v~~~~~~~ 37 (112)
-|-.|++++ |+.+.+||++.
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~ 360 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRP 360 (477)
T ss_pred cCceEecCCccceEEEEeccc
Confidence 456788888 99999999975
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=25.23 E-value=1.9e+02 Score=18.32 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=28.8
Q ss_pred eEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEEEEecC
Q 033738 51 VTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLKTIDVK 96 (112)
Q Consensus 51 v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 96 (112)
++++...+++. ++++.-.-..|.+.|.++|+.+..+.+.
T Consensus 146 iNsV~~~~~G~-------yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGD-------YLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCcc-------EEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 34566666664 7778888888999998888887777544
No 484
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=24.67 E-value=2e+02 Score=18.49 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=39.3
Q ss_pred eEEcCCCCEEEEEcCCeEEEEeCCCCceeeeccccCC-ceEEEEEecCCCCccceeEEEEeeecCCcEEEEeCCCCceEE
Q 033738 13 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHTA-PVTTVIVVPASTPATKILSYCWTASLDETIKYWDFSTPELLK 91 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 91 (112)
.....+|+.++...++.+..+|..+++..-....... .+..-..-.++ .+...+.++.+.-.|..+|....
T Consensus 106 ~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~--------~v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 106 PILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG--------TVYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred ceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc--------EEEEecCCCeEEEEEccCCcEEE
Confidence 3344467644444488888889877876655554331 11111112222 22233366777777777776654
Q ss_pred EE
Q 033738 92 TI 93 (112)
Q Consensus 92 ~~ 93 (112)
..
T Consensus 178 ~~ 179 (370)
T COG1520 178 TY 179 (370)
T ss_pred EE
Confidence 43
No 485
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=24.62 E-value=1.2e+02 Score=15.77 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=13.2
Q ss_pred CCEEEEEc-CCeEEEEeCCCCc
Q 033738 19 VKRLLVCT-SNTVSIFSTSTGL 39 (112)
Q Consensus 19 ~~~l~~~~-~~~v~~~~~~~~~ 39 (112)
|+.+.... +|.|.+||.+++.
T Consensus 88 gHa~nvv~~~G~i~~~D~Q~G~ 109 (111)
T PF15644_consen 88 GHAFNVVNQNGKIVFLDPQSGK 109 (111)
T ss_dssp TTEEEEEEE-SSEEEEBTTTTB
T ss_pred ceEEEEEeCCCeEEEEeCCCCC
Confidence 44444445 6788888887764
No 486
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=23.94 E-value=2.4e+02 Score=19.12 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=26.3
Q ss_pred CCCCcCCCeEEcCCCCEEEEEc--CCeEEEEeCCCCc
Q 033738 5 GRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGL 39 (112)
Q Consensus 5 h~~~v~~~~~~~~~~~~l~~~~--~~~v~~~~~~~~~ 39 (112)
-.+.+++ +-+|-|.++|+... .|.|+-||++...
T Consensus 310 MP~LITD-ilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 310 MPGLITD-ILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred cchhhhe-eEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 3456676 77888888888776 7999999987653
No 487
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=23.79 E-value=2.4e+02 Score=19.03 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=32.3
Q ss_pred CEEEEEc-CCeEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEEe
Q 033738 20 KRLLVCT-SNTVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYWD 83 (112)
Q Consensus 20 ~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 83 (112)
..++.-+ ||.+.+++.+...-.+.+.. .--...+.+.+..+ .+++++.+..+.-|.
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-------sfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-------SFVTASSSWTLECYK 202 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-------EEEEecCceeEEEec
Confidence 4555667 99999999875533333332 22223456666654 444666665666554
No 488
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=23.38 E-value=1.5e+02 Score=16.52 Aligned_cols=48 Identities=8% Similarity=0.317 Sum_probs=24.8
Q ss_pred eEEEEeCCCCceeeeccccCCceEEEEEecCCCCccceeEEEEeeecCCcEEEE
Q 033738 29 TVSIFSTSTGLQISSLEGHTAPVTTVIVVPASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 29 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
-|++.|..++..+...+ +..+.|......+.+.++|++.. .++.-.++
T Consensus 63 Gi~v~D~~T~~ll~~~~-----i~rISfca~D~~d~r~FsyI~~~-~~~~H~f~ 110 (139)
T cd01215 63 GIKVLDEKTGAVLHHHP-----VHRISFIARDSTDARAFGYVYGE-PGGKHRFY 110 (139)
T ss_pred CEEEEcCCCCcEEEeec-----eeeEEEEecCCCCCeEEEEEEEc-CCCcEEEE
Confidence 36777877776554443 33444443333346777555443 34443333
No 489
>smart00415 HSF heat shock factor.
Probab=23.15 E-value=98 Score=15.93 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=10.3
Q ss_pred eEEcCCCCEEEEEc
Q 033738 13 PAFSNDVKRLLVCT 26 (112)
Q Consensus 13 ~~~~~~~~~l~~~~ 26 (112)
+.|+++|+.++...
T Consensus 22 I~W~~~G~~f~I~d 35 (105)
T smart00415 22 ISWSPSGKSFVIWD 35 (105)
T ss_pred EEECCCCCEEEEcC
Confidence 78999987765544
No 490
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.98 E-value=55 Score=19.68 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=8.0
Q ss_pred EEcCCCCEEE
Q 033738 14 AFSNDVKRLL 23 (112)
Q Consensus 14 ~~~~~~~~l~ 23 (112)
-|||||++|-
T Consensus 10 vFSPDGhL~Q 19 (249)
T KOG0183|consen 10 VFSPDGHLFQ 19 (249)
T ss_pred EECCCCCEEe
Confidence 4899998774
No 491
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=22.96 E-value=83 Score=13.65 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.6
Q ss_pred ecCCcEEEEeCCCCceE
Q 033738 74 SLDETIKYWDFSTPELL 90 (112)
Q Consensus 74 ~~d~~i~~~~~~~~~~~ 90 (112)
..+..|.+.+..+|+.+
T Consensus 3 ~~eerV~Vi~~~tGk~l 19 (46)
T PF07533_consen 3 TGEERVPVINRKTGKRL 19 (46)
T ss_dssp TTTSB--EEETTTTEEE
T ss_pred CCcceeEeEECCCCCCc
Confidence 34667888888888765
No 492
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=22.65 E-value=76 Score=12.89 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=12.8
Q ss_pred cCCCeEEcCCCCEEEEEc
Q 033738 9 VSSPPAFSNDVKRLLVCT 26 (112)
Q Consensus 9 v~~~~~~~~~~~~l~~~~ 26 (112)
... +++.++|+..++|.
T Consensus 15 ~~~-IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 15 GNG-IAVDSNGNIYVTGY 31 (38)
T ss_pred EEE-EEECCCCCEEEEEe
Confidence 444 78888888887775
No 493
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=22.36 E-value=41 Score=20.12 Aligned_cols=24 Identities=0% Similarity=0.135 Sum_probs=18.5
Q ss_pred eEEcCCCCEEEEEcCCeEEEEeCC
Q 033738 13 PAFSNDVKRLLVCTSNTVSIFSTS 36 (112)
Q Consensus 13 ~~~~~~~~~l~~~~~~~v~~~~~~ 36 (112)
+..+.+|+.++.+-|..+++||+-
T Consensus 161 ~~ad~nGraf~s~~de~LkvwdlI 184 (247)
T KOG4656|consen 161 NRADKNGRAFFSAPDEKLKVWDLI 184 (247)
T ss_pred cccccCCcEEEecccccccHhhhh
Confidence 445566787777778999999986
No 494
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=22.24 E-value=1.1e+02 Score=15.73 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=13.1
Q ss_pred eEEEEeCCCCceeeeccc
Q 033738 29 TVSIFSTSTGLQISSLEG 46 (112)
Q Consensus 29 ~v~~~~~~~~~~~~~~~~ 46 (112)
.|++.|..+++.++.++.
T Consensus 69 vVkViD~~T~eVIRqIP~ 86 (107)
T PF03646_consen 69 VVKVIDKETGEVIRQIPP 86 (107)
T ss_dssp EEEEEETTT-SEEEEE-H
T ss_pred EEEEEECCCCcEEEeCCc
Confidence 578899999988888764
No 495
>PF13964 Kelch_6: Kelch motif
Probab=21.75 E-value=86 Score=13.17 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=12.7
Q ss_pred CCCCEEEEEc--C-----CeEEEEeCCCC
Q 033738 17 NDVKRLLVCT--S-----NTVSIFSTSTG 38 (112)
Q Consensus 17 ~~~~~l~~~~--~-----~~v~~~~~~~~ 38 (112)
-+++..+.|+ + ..+.+||.++.
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 38 (50)
T PF13964_consen 10 VGGKIYVFGGYDNSGKYSNDVERYDPETN 38 (50)
T ss_pred ECCEEEEECCCCCCCCccccEEEEcCCCC
Confidence 4556666665 2 35667776654
No 496
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=21.51 E-value=1e+02 Score=15.90 Aligned_cols=14 Identities=29% Similarity=0.076 Sum_probs=10.3
Q ss_pred eEEcCCCCEEEEEc
Q 033738 13 PAFSNDVKRLLVCT 26 (112)
Q Consensus 13 ~~~~~~~~~l~~~~ 26 (112)
-.|||||+++..-+
T Consensus 18 Gefs~DGkLv~Ykg 31 (109)
T COG4831 18 GEFSPDGKLVEYKG 31 (109)
T ss_pred ceeCCCCceEEeeC
Confidence 56888888886655
No 497
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=21.33 E-value=2.3e+02 Score=18.00 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=18.4
Q ss_pred cCCCCEEEEEc-CCeEEEEeCCCCceeeec
Q 033738 16 SNDVKRLLVCT-SNTVSIFSTSTGLQISSL 44 (112)
Q Consensus 16 ~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~ 44 (112)
+|+...+++.. .+-+++||+. ++.+..+
T Consensus 64 ~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~ 92 (364)
T COG4247 64 NPDKSLVITTVKKAGLRVYDLS-GKQLQSV 92 (364)
T ss_pred CcCcceEEEeeccCCeEEEecC-CCeeeec
Confidence 45556666666 6789999987 4444444
No 498
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=21.30 E-value=1.1e+02 Score=15.63 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=9.7
Q ss_pred eEEcCCCCEEEEE
Q 033738 13 PAFSNDVKRLLVC 25 (112)
Q Consensus 13 ~~~~~~~~~l~~~ 25 (112)
+.|+++|..++..
T Consensus 19 I~W~~~G~~fiI~ 31 (103)
T PF00447_consen 19 IRWSPDGDSFIIH 31 (103)
T ss_dssp CEECTTSSEEEES
T ss_pred EEEeCCCCEEEEe
Confidence 7899999766543
No 499
>PRK10115 protease 2; Provisional
Probab=21.06 E-value=3.3e+02 Score=19.68 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=38.1
Q ss_pred eEEcCCCCEEEEEc-C------CeEEEEeCCCC--ceeeeccccCCceEEEEEec-CCCCccceeEEEEeeecCCcEEEE
Q 033738 13 PAFSNDVKRLLVCT-S------NTVSIFSTSTG--LQISSLEGHTAPVTTVIVVP-ASTPATKILSYCWTASLDETIKYW 82 (112)
Q Consensus 13 ~~~~~~~~~l~~~~-~------~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~ 82 (112)
++|++|++.|+... + ..++.+++.++ +....+...........+.+ ++ +.++ +-.....++.+.++
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~---~~l~-i~~~~~~~~~~~l~ 252 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK---HYVV-IHLASATTSEVLLL 252 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC---CEEE-EEEECCccccEEEE
Confidence 88999998776654 2 36777888776 33333433333333223333 44 2333 33344455778888
Q ss_pred eC
Q 033738 83 DF 84 (112)
Q Consensus 83 ~~ 84 (112)
+.
T Consensus 253 ~~ 254 (686)
T PRK10115 253 DA 254 (686)
T ss_pred EC
Confidence 84
No 500
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=21.01 E-value=2.7e+02 Score=18.57 Aligned_cols=104 Identities=12% Similarity=-0.034 Sum_probs=0.0
Q ss_pred CCcCCCeEEcCCCCEEEEEc-CCeEEEEeCCCCceeeeccc---------------cCCceEEEEEecCCCCccceeEEE
Q 033738 7 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG---------------HTAPVTTVIVVPASTPATKILSYC 70 (112)
Q Consensus 7 ~~v~~~~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~~~~~~~ 70 (112)
++-.. ++|...+.-|+.+. ---+...+...+........ .++.+..-+.|..-.....++ -+
T Consensus 115 GRPLG-l~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~-a~ 192 (376)
T KOG1520|consen 115 GRPLG-IRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVF-AA 192 (376)
T ss_pred CCcce-EEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEE-ee
Q ss_pred EeeecCCcEEEEeCCCCceEEEEecCCCEEEEEEcCCCcEeC
Q 033738 71 WTASLDETIKYWDFSTPELLKTIDVKFPIFSMVRGKKGFAVF 112 (112)
Q Consensus 71 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (112)
..+..+|++..||..+......+..-.-.+.++.+||+..+.
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl 234 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVL 234 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEE
Done!