BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033739
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FGK0|NDUB8_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
           mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2
           SV=1
          Length = 125

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 97/110 (88%)

Query: 1   MAGRLSNVASQIMGGNGVVGRSVASSLRLRSGMGLPVGKHIVPNKPLSVNDELVWDNGTP 60
           MAGRLS VAS+IMGGNGVV RSV SSLR R+GMGLPVGKHIVP+KPLSVNDEL+WDNGT 
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  FPEPCIDRIADTVGKYEALGWLLGGLGFFASLGALAVWNDKASKIPFVSR 110
           FPEPCIDRIADTVGKYEAL WL GGLGFF  LG LAV NDKASK+PF  R
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPR 110


>sp|Q49ZU9|FENR_STAS1 Ferredoxin--NADP reductase OS=Staphylococcus saprophyticus subsp.
          saprophyticus (strain ATCC 15305 / DSM 20229)
          GN=SSP0530 PE=3 SV=1
          Length = 343

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)

Query: 40 HIVPNKPLSVNDELVWDNGTPFPEPCIDRIADTV 73
          H+ P K       ++WD G   P+PC + I DTV
Sbjct: 41 HVYPEK-------IIWDIGGLAPKPCFEVIQDTV 67


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,922,381
Number of Sequences: 539616
Number of extensions: 1925383
Number of successful extensions: 4762
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4761
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)