Query 033739
Match_columns 112
No_of_seqs 27 out of 29
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05821 NDUF_B8: NADH-ubiquin 84.3 2.5 5.3E-05 33.0 5.0 35 76-112 122-156 (179)
2 PF08265 YL1_C: YL1 nuclear pr 52.6 5.7 0.00012 23.1 0.4 18 93-110 7-24 (30)
3 KOG4481 Uncharacterized conser 47.8 19 0.00042 29.0 2.8 41 41-83 86-127 (194)
4 KOG0815 60S acidic ribosomal p 43.9 38 0.00082 28.3 4.0 45 54-103 192-236 (245)
5 PF02935 COX7C: Cytochrome c o 43.4 43 0.00093 22.0 3.5 31 65-95 28-58 (65)
6 PF06181 DUF989: Protein of un 39.2 37 0.00081 29.0 3.4 40 56-95 59-103 (300)
7 PF12351 Fig1: Ca2+ regulator 34.0 47 0.001 25.4 3.0 28 71-98 152-180 (182)
8 PF08285 DPM3: Dolichol-phosph 32.1 40 0.00086 23.7 2.1 24 80-103 42-68 (91)
9 PF07622 DUF1583: Protein of u 28.4 24 0.00053 31.1 0.7 35 48-82 22-57 (399)
10 PTZ00174 phosphomannomutase; P 27.3 42 0.00092 25.7 1.7 22 64-85 178-199 (247)
11 COG3748 Predicted membrane pro 26.5 78 0.0017 28.1 3.3 27 69-95 72-100 (407)
12 KOG4841 Dolichol-phosphate man 26.1 41 0.00088 24.5 1.3 23 81-103 47-72 (95)
13 KOG2532 Permease of the major 25.7 42 0.00092 28.9 1.6 35 76-110 194-228 (466)
14 PRK15126 thiamin pyrimidine py 25.7 44 0.00096 25.4 1.6 25 64-88 178-202 (272)
15 PF08282 Hydrolase_3: haloacid 25.6 52 0.0011 23.3 1.8 25 62-86 174-198 (254)
16 PF05116 S6PP: Sucrose-6F-phos 24.7 53 0.0011 25.5 1.8 24 65-88 156-179 (247)
17 cd00929 Cyt_c_Oxidase_VIIc Cyt 24.0 74 0.0016 20.0 2.1 20 76-95 21-40 (46)
18 TIGR02471 sucr_syn_bact_C sucr 23.5 55 0.0012 24.4 1.7 24 64-87 149-172 (236)
19 TIGR01482 SPP-subfamily Sucros 23.5 57 0.0012 23.6 1.7 23 65-87 140-162 (225)
20 PRK10976 putative hydrolase; P 23.3 50 0.0011 24.9 1.4 24 64-87 180-203 (266)
21 PRK10513 sugar phosphate phosp 23.2 54 0.0012 24.7 1.6 24 64-87 186-209 (270)
22 PRK13836 conjugal transfer pro 21.9 48 0.001 25.6 1.1 33 76-108 27-63 (220)
23 PRK03669 mannosyl-3-phosphogly 21.8 83 0.0018 24.2 2.4 25 64-88 177-201 (271)
24 PF08802 CytB6-F_Fe-S: Cytochr 21.3 1.2E+02 0.0027 18.6 2.6 21 71-91 4-24 (39)
25 COG3920 Signal transduction hi 20.4 56 0.0012 25.5 1.2 14 50-63 160-173 (221)
26 PF00976 ACTH_domain: Corticot 20.1 77 0.0017 19.8 1.5 20 33-52 9-28 (39)
No 1
>PF05821 NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8); InterPro: IPR008699 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=84.32 E-value=2.5 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHHhHHHHHHHhhhhheecCCCCCCCCCCCCC
Q 033739 76 YEALGWLLGGLGFFASLGALAVWNDKASKIPFVSRSL 112 (112)
Q Consensus 76 yeAl~wl~gGL~ffa~l~~la~~~Dk~Sk~p~~pk~~ 112 (112)
...+.++++-|||+..++++... -.+-+|.+||+.
T Consensus 122 ~~~~~~l~~flg~~~~~~~~~~~--~~~~~P~~pKqY 156 (179)
T PF05821_consen 122 QSMLKQLFGFLGFMLFMFYLGEM--YPPYRPVMPKQY 156 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh--ccCCCCCCcccC
Confidence 44567777777777777666443 345589999873
No 2
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=52.57 E-value=5.7 Score=23.06 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=16.2
Q ss_pred hhhheecCCCCCCCCCCC
Q 033739 93 GALAVWNDKASKIPFVSR 110 (112)
Q Consensus 93 ~~la~~~Dk~Sk~p~~pk 110 (112)
++-|.|.|+.+++||...
T Consensus 7 glpA~Y~DP~T~l~Y~n~ 24 (30)
T PF08265_consen 7 GLPARYRDPKTGLPYANS 24 (30)
T ss_pred CCCccccCCCCCCcccCH
Confidence 778999999999999864
No 3
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.82 E-value=19 Score=29.01 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCCCCCCCcccceeecCCCCCCCCccccccC-cccHHHHHHHHH
Q 033739 41 IVPNKPLSVNDELVWDNGTPFPEPCIDRIAD-TVGKYEALGWLL 83 (112)
Q Consensus 41 ~~P~kpLpe~~EL~WDdG~a~PEp~iDf~a~-~i~kyeAl~wl~ 83 (112)
+.--.++|.+-.+.||.|.. ++-|-+++. +|+--|||.+|=
T Consensus 86 et~q~~fp~e~r~p~~~~f~--~~~i~rIpkgkit~~eAL~~ln 127 (194)
T KOG4481|consen 86 ETRQEEFPKEFRLPKDYHFD--EINIKRIPKGKITIVEALTFLN 127 (194)
T ss_pred chhcccchhhcCCcccccCC--CcCcccCCCCceeHHHHHHHHh
Confidence 34456789999999998866 666888885 999999998863
No 4
>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]
Probab=43.89 E-value=38 Score=28.26 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=37.7
Q ss_pred eecCCCCCCCCccccccCcccHHHHHHHHHhHHHHHHHhhhhheecCCCC
Q 033739 54 VWDNGTPFPEPCIDRIADTVGKYEALGWLLGGLGFFASLGALAVWNDKAS 103 (112)
Q Consensus 54 ~WDdG~a~PEp~iDf~a~~i~kyeAl~wl~gGL~ffa~l~~la~~~Dk~S 103 (112)
+.|||+-|+.-.|| |++.+++..+..|++-++.+.+.+.|-.-+|
T Consensus 192 VyDnGsiy~pevLD-----iteE~l~~~f~~~vs~va~~sL~~~ypt~as 236 (245)
T KOG0815|consen 192 VYDNGSIYNPEVLD-----ITEEDLFSKFLSGVSNVASVSLAAGYPTLAS 236 (245)
T ss_pred EecCCcccChhhcC-----CcHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 78999987765555 6888999999999999999988888866555
No 5
>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....
Probab=43.42 E-value=43 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=18.9
Q ss_pred ccccccCcccHHHHHHHHHhHHHHHHHhhhh
Q 033739 65 CIDRIADTVGKYEALGWLLGGLGFFASLGAL 95 (112)
Q Consensus 65 ~iDf~a~~i~kyeAl~wl~gGL~ffa~l~~l 95 (112)
-|=|...+--.+-...|..+|.||.+.++.+
T Consensus 28 NLPF~~~nK~~~~~~~~~f~g~GF~~PF~~~ 58 (65)
T PF02935_consen 28 NLPFNVKNKWPFAVKFWGFFGSGFAAPFLIV 58 (65)
T ss_dssp SSSS--SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcchhHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444411244677889999999988744
No 6
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.20 E-value=37 Score=28.97 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=29.1
Q ss_pred cCCCCCCC---CccccccC--cccHHHHHHHHHhHHHHHHHhhhh
Q 033739 56 DNGTPFPE---PCIDRIAD--TVGKYEALGWLLGGLGFFASLGAL 95 (112)
Q Consensus 56 DdG~a~PE---p~iDf~a~--~i~kyeAl~wl~gGL~ffa~l~~l 95 (112)
.-|.++.| .+=+.+++ |--|+|+-..|+.|++++..+|+.
T Consensus 59 GGGFYh~~KY~vaP~~mP~~LhWfkWesY~TWlSGfaLl~~~Yy~ 103 (300)
T PF06181_consen 59 GGGFYHVQKYLVAPEKMPEHLHWFKWESYTTWLSGFALLIVVYYF 103 (300)
T ss_pred cccccchhhhccCcccCCccceeehhHhHHHHHHHHHHHHHHHHh
Confidence 44554444 23345666 448999999999999999999874
No 7
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=34.01 E-value=47 Score=25.41 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=22.5
Q ss_pred CcccH-HHHHHHHHhHHHHHHHhhhhhee
Q 033739 71 DTVGK-YEALGWLLGGLGFFASLGALAVW 98 (112)
Q Consensus 71 ~~i~k-yeAl~wl~gGL~ffa~l~~la~~ 98 (112)
-|+++ .|++.|..++|-+..+++....|
T Consensus 152 ~~~G~~a~~l~W~aF~f~~l~~lgl~~~~ 180 (182)
T PF12351_consen 152 VKVGKAAMVLGWFAFAFLLLVCLGLWVMY 180 (182)
T ss_pred eccchhHHhHHHHHHHHHHHHHHHHHHee
Confidence 46766 99999999999888888776654
No 8
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=32.12 E-value=40 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHhHHH---HHHHhhhhheecCCCC
Q 033739 80 GWLLGGLG---FFASLGALAVWNDKAS 103 (112)
Q Consensus 80 ~wl~gGL~---ffa~l~~la~~~Dk~S 103 (112)
.|++.-|| .+...|.+++|||.+.
T Consensus 42 ~~~Lv~fG~Ysl~~lgy~v~tFnDcpe 68 (91)
T PF08285_consen 42 FYALVSFGCYSLFTLGYGVATFNDCPE 68 (91)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCHH
Confidence 34444444 4445599999999864
No 9
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM.
Probab=28.44 E-value=24 Score=31.11 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.8
Q ss_pred CcccceeecCCCCCCCCccccccCcccH-HHHHHHH
Q 033739 48 SVNDELVWDNGTPFPEPCIDRIADTVGK-YEALGWL 82 (112)
Q Consensus 48 pe~~EL~WDdG~a~PEp~iDf~a~~i~k-yeAl~wl 82 (112)
..+||.+||-|..--.||||++|=-|++ .-+--|+
T Consensus 22 ~ieYeF~~~~~~~~vhPavgR~a~l~~~~gv~~hw~ 57 (399)
T PF07622_consen 22 SIEYEFFYDWDKTSVHPAVGRMAFLIDSDGVSEHWI 57 (399)
T ss_pred eEEEEEEecCCccccccccCceEEEEcCCCceeeEe
Confidence 3589999999999999999999966654 3333343
No 10
>PTZ00174 phosphomannomutase; Provisional
Probab=27.27 E-value=42 Score=25.66 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=19.7
Q ss_pred CccccccCcccHHHHHHHHHhH
Q 033739 64 PCIDRIADTVGKYEALGWLLGG 85 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gG 85 (112)
.++|..+..++|..|+.||+-=
T Consensus 178 ~~leI~~~gvsKg~al~~L~~~ 199 (247)
T PTZ00174 178 ISFDVFPKGWDKTYCLRHLEND 199 (247)
T ss_pred eEEEeeeCCCcHHHHHHHHHhh
Confidence 4899999999999999999854
No 11
>COG3748 Predicted membrane protein [Function unknown]
Probab=26.52 E-value=78 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=22.9
Q ss_pred ccCcc--cHHHHHHHHHhHHHHHHHhhhh
Q 033739 69 IADTV--GKYEALGWLLGGLGFFASLGAL 95 (112)
Q Consensus 69 ~a~~i--~kyeAl~wl~gGL~ffa~l~~l 95 (112)
+++|. -|+|+-.-|+.||...+.+|+.
T Consensus 72 mPEhL~WFkWEsY~TWlSGfalL~ivYY~ 100 (407)
T COG3748 72 MPEHLHWFKWEAYFTWLSGFALLCIVYYF 100 (407)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHc
Confidence 56665 6899999999999999999764
No 12
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.07 E-value=41 Score=24.49 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=15.1
Q ss_pred HHHhHHHHHHH---hhhhheecCCCC
Q 033739 81 WLLGGLGFFAS---LGALAVWNDKAS 103 (112)
Q Consensus 81 wl~gGL~ffa~---l~~la~~~Dk~S 103 (112)
+++-.+|.++. +|.+|.+||++.
T Consensus 47 ~~~l~~G~Ya~~tv~Y~VATfnDc~e 72 (95)
T KOG4841|consen 47 YLLLSAGCYALGTVGYRVATFNDCEE 72 (95)
T ss_pred HHHHHHHhHhhhhheeeeeccCCcHH
Confidence 44444454444 399999999863
No 13
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.74 E-value=42 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHhhhhheecCCCCCCCCCCC
Q 033739 76 YEALGWLLGGLGFFASLGALAVWNDKASKIPFVSR 110 (112)
Q Consensus 76 yeAl~wl~gGL~ffa~l~~la~~~Dk~Sk~p~~pk 110 (112)
++...|..|++|++-.+--.-.|.|+++|.|++.+
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~ 228 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE 228 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH
Confidence 67888999999999999888889999999988643
No 14
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=25.72 E-value=44 Score=25.41 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred CccccccCcccHHHHHHHHHhHHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLGF 88 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~f 88 (112)
-++|..+..++|+.|+.|+|-=+++
T Consensus 178 ~~~eI~~~g~sKg~al~~l~~~~gi 202 (272)
T PRK15126 178 DCLEVLPVGCNKGAALAVLSQHLGL 202 (272)
T ss_pred cEEEeecCCCChHHHHHHHHHHhCC
Confidence 4899999999999999999866553
No 15
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=25.65 E-value=52 Score=23.25 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.2
Q ss_pred CCCccccccCcccHHHHHHHHHhHH
Q 033739 62 PEPCIDRIADTVGKYEALGWLLGGL 86 (112)
Q Consensus 62 PEp~iDf~a~~i~kyeAl~wl~gGL 86 (112)
.+-++|+.+.+++|..|+.+++=-+
T Consensus 174 ~~~~lei~~~~vsK~~ai~~l~~~~ 198 (254)
T PF08282_consen 174 SPYFLEITPKGVSKGSAIKYLLEYL 198 (254)
T ss_dssp ETTEEEEEETTSSHHHHHHHHHHHH
T ss_pred cccceEEeeCCCCHHHHHHHHhhhc
Confidence 4578999999999999999998433
No 16
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=24.73 E-value=53 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.0
Q ss_pred ccccccCcccHHHHHHHHHhHHHH
Q 033739 65 CIDRIADTVGKYEALGWLLGGLGF 88 (112)
Q Consensus 65 ~iDf~a~~i~kyeAl~wl~gGL~f 88 (112)
.+|+.|...+|..|+.|++-=+++
T Consensus 156 ~ldilP~~a~K~~Al~~L~~~~~~ 179 (247)
T PF05116_consen 156 DLDILPKGASKGAALRYLMERWGI 179 (247)
T ss_dssp EEEEEETT-SHHHHHHHHHHHHT-
T ss_pred eEEEccCCCCHHHHHHHHHHHhCC
Confidence 599999999999999999987754
No 17
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=24.02 E-value=74 Score=20.00 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHhhhh
Q 033739 76 YEALGWLLGGLGFFASLGAL 95 (112)
Q Consensus 76 yeAl~wl~gGL~ffa~l~~l 95 (112)
--+..|+.+|.+|.+.+..+
T Consensus 21 ~~~~~~~ffg~GF~~PF~i~ 40 (46)
T cd00929 21 LTALFHLFFGSGFSAPFIVV 40 (46)
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 45678889999999988754
No 18
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=23.51 E-value=55 Score=24.42 Aligned_cols=24 Identities=25% Similarity=0.111 Sum_probs=20.1
Q ss_pred CccccccCcccHHHHHHHHHhHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
-++|+.+..++|.+|+.|++-=++
T Consensus 149 ~~~ei~~~~~~K~~al~~l~~~~g 172 (236)
T TIGR02471 149 WFLDVLPLRASKGLALRYLSYRWG 172 (236)
T ss_pred ceEEEeeCCCChHHHHHHHHHHhC
Confidence 358999999999999999986444
No 19
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=23.45 E-value=57 Score=23.62 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=19.7
Q ss_pred ccccccCcccHHHHHHHHHhHHH
Q 033739 65 CIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 65 ~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
++|..++.++|.+++.|++-=++
T Consensus 140 ~~ei~~~~~~K~~~i~~l~~~~~ 162 (225)
T TIGR01482 140 DIHILPQGVNKGVAVKKLKEKLG 162 (225)
T ss_pred EEEEeeCCCCHHHHHHHHHHHhC
Confidence 78999999999999999986443
No 20
>PRK10976 putative hydrolase; Provisional
Probab=23.33 E-value=50 Score=24.89 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred CccccccCcccHHHHHHHHHhHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
-++|..+..++|..|+.|+|-=|+
T Consensus 180 ~~~eI~~~gvsKg~al~~l~~~lg 203 (266)
T PRK10976 180 TCLEVMAGGVSKGHALEAVAKKLG 203 (266)
T ss_pred ceEEEEcCCCChHHHHHHHHHHcC
Confidence 489999999999999999986554
No 21
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=23.22 E-value=54 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.8
Q ss_pred CccccccCcccHHHHHHHHHhHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
-++|..+..++|..|+.|+|-=++
T Consensus 186 ~~~eI~~~gvsKg~al~~l~~~~g 209 (270)
T PRK10513 186 YFLEILDKRVNKGTGVKSLAEHLG 209 (270)
T ss_pred eeEEEeCCCCChHHHHHHHHHHhC
Confidence 478999999999999999996544
No 22
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=21.91 E-value=48 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=17.4
Q ss_pred HHHHHHHHhHH-HHHHHhh-hhh-eecCCCCC-CCCC
Q 033739 76 YEALGWLLGGL-GFFASLG-ALA-VWNDKASK-IPFV 108 (112)
Q Consensus 76 yeAl~wl~gGL-~ffa~l~-~la-~~~Dk~Sk-~p~~ 108 (112)
..+.+|.+.++ +++..+. +.+ .|--..|| .||+
T Consensus 27 ~~~~~W~~~a~~~l~~a~~~v~~~~~l~~~~~i~PyV 63 (220)
T PRK13836 27 KAAAAWRIVGILGLTMAVIGFGYALYQSTQVKLVPYI 63 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEeEE
Confidence 34688877777 4433332 221 24444455 7775
No 23
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.82 E-value=83 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.6
Q ss_pred CccccccCcccHHHHHHHHHhHHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLGF 88 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~f 88 (112)
.++|..+..++|..|+.++|-=++.
T Consensus 177 ~~iEi~~~g~sKg~al~~l~~~lgi 201 (271)
T PRK03669 177 RFWHVLDASAGKDQAANWLIATYQQ 201 (271)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999987766
No 24
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=21.33 E-value=1.2e+02 Score=18.60 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=15.0
Q ss_pred CcccHHHHHHHHHhHHHHHHH
Q 033739 71 DTVGKYEALGWLLGGLGFFAS 91 (112)
Q Consensus 71 ~~i~kyeAl~wl~gGL~ffa~ 91 (112)
|.+++.+.+-|+++|-.-...
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a 24 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPA 24 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHH
Confidence 678999999999988654433
No 25
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=20.44 E-value=56 Score=25.45 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=11.4
Q ss_pred ccceeecCCCCCCC
Q 033739 50 NDELVWDNGTPFPE 63 (112)
Q Consensus 50 ~~EL~WDdG~a~PE 63 (112)
..-++||||..+|+
T Consensus 160 ~~l~v~deg~G~~~ 173 (221)
T COG3920 160 FLLTVWDEGGGPPV 173 (221)
T ss_pred EEEEEEECCCCCCC
Confidence 35689999999776
No 26
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=20.11 E-value=77 Score=19.78 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCCCcccc
Q 033739 33 MGLPVGKHIVPNKPLSVNDE 52 (112)
Q Consensus 33 ~g~Pv~~~~~P~kpLpe~~E 52 (112)
+|-|+++-+.|-|..|...|
T Consensus 9 wgkp~g~KRRPvKVypn~~E 28 (39)
T PF00976_consen 9 WGKPVGRKRRPVKVYPNGAE 28 (39)
T ss_pred ccCCCCcccCcceeCCCCcc
Confidence 78999999999999888777
Done!