Query 033739
Match_columns 112
No_of_seqs 27 out of 29
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_L Cytochrome C oxidase su 72.0 5.1 0.00017 25.8 3.9 54 17-95 3-56 (63)
2 1u02_A Trehalose-6-phosphate p 22.4 40 0.0014 23.9 1.8 25 63-87 149-173 (239)
3 1v54_L VIIIA, cytochrome C oxi 17.5 1.7E+02 0.0057 17.5 3.6 19 77-95 22-40 (47)
4 3r4c_A Hydrolase, haloacid deh 15.7 72 0.0024 22.2 1.8 25 63-87 183-207 (268)
5 1xvi_A MPGP, YEDP, putative ma 15.3 95 0.0033 22.4 2.5 24 64-87 179-202 (275)
6 2dw3_A Intrinsic membrane prot 15.2 1.6E+02 0.0055 19.7 3.4 30 76-105 31-60 (77)
7 2k1e_A Water soluble analogue 15.0 85 0.0029 20.1 2.0 21 72-92 65-85 (103)
8 1s2o_A SPP, sucrose-phosphatas 14.3 74 0.0025 22.5 1.6 24 64-87 152-175 (244)
9 4h33_A LMO2059 protein; bilaye 14.0 2.1E+02 0.0073 19.3 3.9 26 72-97 68-94 (137)
10 2hje_A Autoinducer 2 sensor ki 13.8 53 0.0018 25.7 0.8 14 47-60 67-80 (221)
No 1
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.95 E-value=5.1 Score=25.76 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=21.4
Q ss_pred ceeehhhhhhhhhhcCCCCCCCCCCCCCCCCCcccceeecCCCCCCCCccccccCcccHHHHHHHHHhHHHHHHHhhhh
Q 033739 17 GVVGRSVASSLRLRSGMGLPVGKHIVPNKPLSVNDELVWDNGTPFPEPCIDRIADTVGKYEALGWLLGGLGFFASLGAL 95 (112)
Q Consensus 17 ~~~~R~~~~al~~R~G~g~Pv~~~~~P~kpLpe~~EL~WDdG~a~PEp~iDf~a~~i~kyeAl~wl~gGL~ffa~l~~l 95 (112)
+..+|...+++.+|+. ..+-|-+-||=+ ..+-..--+..|..+|+||.+.+..+
T Consensus 3 ~~s~R~f~ts~~r~sh------~~eGp~sNLPF~-------------------~~nk~~~~~~~~~f~g~GF~~PF~i~ 56 (63)
T 2y69_L 3 GQSIRRFTTSVVRRSH------YEEGPGKNIPFS-------------------VENKWRLLAMMTLFFGSGFAAPFFIV 56 (63)
T ss_dssp ---------------C------CCCSTTTSSSSC-------------------CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhccHHHhcC------CCCCCCCcCCcC-------------------CcchhHHHHHHHHHHHHHHhhhHHHH
Confidence 3457888888887771 222244455533 22222234667888899999888654
No 2
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=22.42 E-value=40 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=21.3
Q ss_pred CCccccccCcccHHHHHHHHHhHHH
Q 033739 63 EPCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 63 Ep~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
.-++|..+..++|..|+.+++--++
T Consensus 149 ~~~lei~~~~~~Kg~al~~l~~~~g 173 (239)
T 1u02_A 149 KMIIELRVPGVNKGSAIRSVRGERP 173 (239)
T ss_dssp SSEEEEECTTCCHHHHHHHHHTTSC
T ss_pred CcEEEEEcCCCCHHHHHHHHHhhCC
Confidence 3479999999999999999996554
No 3
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=17.54 E-value=1.7e+02 Score=17.48 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=14.6
Q ss_pred HHHHHHHhHHHHHHHhhhh
Q 033739 77 EALGWLLGGLGFFASLGAL 95 (112)
Q Consensus 77 eAl~wl~gGL~ffa~l~~l 95 (112)
-+..|..+|.||.+.+..+
T Consensus 22 ~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 22 LAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 4567888899998888644
No 4
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=15.66 E-value=72 Score=22.19 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=21.2
Q ss_pred CCccccccCcccHHHHHHHHHhHHH
Q 033739 63 EPCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 63 Ep~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
..++|..+..++|..|+.++|-=|+
T Consensus 183 ~~~~ei~~~~~~K~~~l~~l~~~lg 207 (268)
T 3r4c_A 183 PLFADVNVAGTSKATGLSLFADYYR 207 (268)
T ss_dssp TTEEEEEETTCCHHHHHHHHHHHTT
T ss_pred CCeEEEeeCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999987654
No 5
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=15.29 E-value=95 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.4
Q ss_pred CccccccCcccHHHHHHHHHhHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
.++|..+..++|..|+.+++--++
T Consensus 179 ~~leI~~~~~~K~~~l~~l~~~~~ 202 (275)
T 1xvi_A 179 RFWHVLDASAGKDQAANWIIATYQ 202 (275)
T ss_dssp SCEEEEETTCCHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCHHHHHHHHHHHhh
Confidence 479999999999999999997665
No 6
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=15.20 E-value=1.6e+02 Score=19.71 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHHHhhhhheecCCCCCC
Q 033739 76 YEALGWLLGGLGFFASLGALAVWNDKASKI 105 (112)
Q Consensus 76 yeAl~wl~gGL~ffa~l~~la~~~Dk~Sk~ 105 (112)
..|...+++++.+...++.+-..-++.||.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 455556666777777778888888998885
No 7
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=15.03 E-value=85 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHhHHHHHHHh
Q 033739 72 TVGKYEALGWLLGGLGFFASL 92 (112)
Q Consensus 72 ~i~kyeAl~wl~gGL~ffa~l 92 (112)
..+|--+..|.+.|+.+|+.+
T Consensus 65 ~~gr~~~~~~~l~G~~~~~~~ 85 (103)
T 2k1e_A 65 EEGRKVAEQVMKAGIEVFALV 85 (103)
T ss_dssp SSCTHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 557888899999999998877
No 8
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=14.27 E-value=74 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.8
Q ss_pred CccccccCcccHHHHHHHHHhHHH
Q 033739 64 PCIDRIADTVGKYEALGWLLGGLG 87 (112)
Q Consensus 64 p~iDf~a~~i~kyeAl~wl~gGL~ 87 (112)
-++|..+..++|.+++.+++--++
T Consensus 152 ~~lei~~~~~~K~~~l~~l~~~~~ 175 (244)
T 1s2o_A 152 KDVDLLPQRSNKGNATQYLQQHLA 175 (244)
T ss_dssp TEEEEEETTCSHHHHHHHHHHHTT
T ss_pred ceEEeccCCCChHHHHHHHHHHhC
Confidence 478999999999999999997554
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=14.01 E-value=2.1e+02 Score=19.26 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.8
Q ss_pred cccHHHHHHHHHhHHHHHHHh-hhhhe
Q 033739 72 TVGKYEALGWLLGGLGFFASL-GALAV 97 (112)
Q Consensus 72 ~i~kyeAl~wl~gGL~ffa~l-~~la~ 97 (112)
..++--+..|.+.|+++|+.+ ..++.
T Consensus 68 ~~gr~~~~~~~~~g~~~~~~~~~~i~~ 94 (137)
T 4h33_A 68 PIGRILASIMMLFGIAFIGMITSTITN 94 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777889999999999887 44443
No 10
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=13.84 E-value=53 Score=25.74 Aligned_cols=14 Identities=29% Similarity=0.902 Sum_probs=12.5
Q ss_pred CCcccceeecCCCC
Q 033739 47 LSVNDELVWDNGTP 60 (112)
Q Consensus 47 Lpe~~EL~WDdG~a 60 (112)
+-.++++.||||.+
T Consensus 67 I~~~~~~~WdDgNa 80 (221)
T 2hje_A 67 LTDHKGIIWDDGNA 80 (221)
T ss_dssp EECSSSEEEECSGG
T ss_pred EEeCCceEEECCCc
Confidence 66789999999998
Done!