Query 033740
Match_columns 112
No_of_seqs 107 out of 183
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_a 40S ribosomal protein S 100.0 1.1E-67 3.7E-72 384.8 7.1 106 1-107 1-106 (119)
2 2xzm_5 Ribosomal protein S26E 100.0 8.4E-65 2.9E-69 369.6 6.6 103 1-103 1-105 (119)
3 1m06_J J protein, small core p 55.3 6.5 0.00022 21.5 1.7 15 1-15 1-15 (26)
4 3mhs_C SAGA-associated factor 46.1 14 0.00048 25.7 2.7 17 15-31 65-81 (99)
5 1lng_A SRP19, signal recogniti 41.1 3.9 0.00013 27.4 -0.8 21 26-46 16-36 (87)
6 1twf_J DNA-directed RNA polyme 39.8 7.3 0.00025 25.6 0.4 14 19-32 3-16 (70)
7 3dlu_A SRP19, signal recogniti 38.6 4.5 0.00015 28.1 -0.8 20 27-46 20-39 (106)
8 3na7_A HP0958; flagellar bioge 37.4 12 0.00041 28.3 1.3 15 19-33 221-235 (256)
9 1ef4_A Subunit N, DNA-directed 35.4 8 0.00027 24.4 0.0 12 19-30 2-13 (55)
10 4ayb_N DNA-directed RNA polyme 34.0 10 0.00035 24.7 0.4 12 19-30 3-14 (66)
11 1jjd_A Metallothionein, SMTA; 33.6 14 0.00048 23.1 0.9 17 22-38 9-25 (55)
12 1kvn_A SRP19; RNA binding prot 33.3 6.2 0.00021 27.3 -0.8 21 27-47 20-40 (104)
13 1jid_A Signal recognition part 30.3 7.6 0.00026 27.9 -0.8 21 26-46 31-51 (128)
14 2m0d_A Zinc finger and BTB dom 26.2 31 0.0011 15.4 1.3 14 19-32 2-15 (30)
15 1a6b_B Momulv, zinc finger pro 25.3 23 0.00077 20.5 0.8 14 15-28 5-18 (40)
16 2ecw_A Tripartite motif-contai 25.0 26 0.0009 20.7 1.1 27 20-46 59-85 (85)
17 2g84_A Cytidine and deoxycytid 24.2 21 0.00073 26.3 0.7 21 66-86 106-129 (197)
18 2kvf_A Zinc finger and BTB dom 21.6 44 0.0015 14.9 1.3 13 19-31 2-14 (28)
19 2yu5_A Zinc finger protein 473 21.0 70 0.0024 16.1 2.2 15 18-32 10-24 (44)
20 2kvh_A Zinc finger and BTB dom 20.7 49 0.0017 14.7 1.4 13 19-31 2-14 (27)
21 2elv_A Zinc finger protein 406 20.6 63 0.0022 15.4 1.9 14 18-31 7-20 (36)
22 2ys4_A Hydrocephalus-inducing 20.6 58 0.002 21.3 2.2 37 11-47 19-55 (122)
23 2xoc_A E3 ubiquitin-protein li 20.4 37 0.0013 27.0 1.4 13 20-32 79-91 (261)
24 2d9k_A FLN29 gene product; zin 20.1 53 0.0018 19.7 1.8 13 19-31 42-54 (75)
25 1nc8_A Nucleocapsid protein; H 20.1 28 0.00097 18.2 0.5 9 20-28 6-14 (29)
No 1
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=100.00 E-value=1.1e-67 Score=384.84 Aligned_cols=106 Identities=61% Similarity=1.042 Sum_probs=96.9
Q ss_pred CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhccccccccceeeeeEEEeeeecee
Q 033740 1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYDNYVLPKLYAKMQYCVSCAIH 80 (112)
Q Consensus 1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~~y~lPKlyvKl~YCvSCAIH 80 (112)
||+|||||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+||+|||+|||||++|+|||||+|+|||||||||
T Consensus 1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaavRDi~easv~~~y~lPKlyvKl~YCVSCAIH 80 (119)
T 3u5c_a 1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIH 80 (119)
T ss_dssp -CCCCSSTTSCCCSCSCCCEEECTTTCCEEEGGGSCEEEEEECSSCSSTHHHHHHTCCSSSCCCCCEEEEEECCSHHHHH
T ss_pred CCcccccCCCCCCCCCCCccEeeccccccccccceeeEEeCcCcccHHHHHHHHhccchhhccccceeEEEEEeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccCchhhccCCCCccccccCCc
Q 033740 81 SHVVRVRSRTDRRNREPPKRFMRRRVS 107 (112)
Q Consensus 81 skVVR~RS~e~RK~r~~p~r~~~~~~~ 107 (112)
++||||||+|+||+|+||+|| ++.++
T Consensus 81 skVVR~RS~e~Rk~r~pp~r~-~~~~~ 106 (119)
T 3u5c_a 81 ARIVRVRSREDRKNRAPPQRP-RFNRE 106 (119)
T ss_dssp TSSCCCCCTTTTSCCCCC---------
T ss_pred ccccccCChHHcccCCCCCcc-CcccC
Confidence 999999999999999999999 55443
No 2
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=100.00 E-value=8.4e-65 Score=369.64 Aligned_cols=103 Identities=50% Similarity=0.939 Sum_probs=95.8
Q ss_pred CCcccccCCCCCCCCCccceEeecCCcceeecccceeeeeecccchhhHhhhHHHhcccc--ccccceeeeeEEEeeeec
Q 033740 1 MTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQDACIYD--NYVLPKLYAKMQYCVSCA 78 (112)
Q Consensus 1 M~kKRrNnGr~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVeaaa~rDi~easv~~--~y~lPKlyvKl~YCvSCA 78 (112)
||+|||||||+|+|+|||++|+|+|||+|||||||||+|+|+||||+|++|||+||+||+ +|+|||||+|+|||||||
T Consensus 1 M~kKRrN~GR~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA 80 (119)
T 2xzm_5 1 MPVKRRNAGRSQKNRGHTRTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA 80 (119)
T ss_dssp -CCCCSSTTCCCCSSSCCCEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred CCcccccCCCCCCCCCCCccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred eecceecccCchhhccCCCCccccc
Q 033740 79 IHSHVVRVRSRTDRRNREPPKRFMR 103 (112)
Q Consensus 79 IHskVVR~RS~e~RK~r~~p~r~~~ 103 (112)
||++||||||+|+||+|+||++|++
T Consensus 81 IH~kIVRvRs~e~Rk~r~pp~~~~~ 105 (119)
T 2xzm_5 81 IHSRVVRVRCAEDRRIRRPPIRNRK 105 (119)
T ss_dssp HHTTSSCCCCTGGGGCCCC------
T ss_pred eeccccccCCHHHcccCCCCCcccc
Confidence 9999999999999999999999843
No 3
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=55.35 E-value=6.5 Score=21.47 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.9
Q ss_pred CCcccccCCCCCCCC
Q 033740 1 MTFKRRNGGRNKHGR 15 (112)
Q Consensus 1 M~kKRrNnGr~Kkgr 15 (112)
|.+-||+.||+|+.|
T Consensus 1 mk~~rrs~~r~kgar 15 (26)
T 1m06_J 1 MKKARRSPSRRKGAR 15 (26)
T ss_dssp CCGGGSCCCCCSSSC
T ss_pred CcccccCCCcCCceE
Confidence 778899999999875
No 4
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=46.15 E-value=14 Score=25.73 Aligned_cols=17 Identities=29% Similarity=0.851 Sum_probs=13.8
Q ss_pred CCccceEeecCCcceee
Q 033740 15 RGHVNFIRCSNCGKCCP 31 (112)
Q Consensus 15 rGhv~~V~C~nCgr~vP 31 (112)
..-.+.+.|.||+|-|.
T Consensus 65 ~~~s~~~~C~nC~R~va 81 (99)
T 3mhs_C 65 QESSQYIHCENCGRDVS 81 (99)
T ss_dssp CTTSCEEECTTTCCEEE
T ss_pred ccCCCeEECCCCCCCch
Confidence 35677899999999875
No 5
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=41.05 E-value=3.9 Score=27.40 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=14.8
Q ss_pred Ccceeecccceeeeeecccch
Q 033740 26 CGKCCPKDKAIKRFLVRNIVE 46 (112)
Q Consensus 26 Cgr~vPKDKAIKrf~irNiVe 46 (112)
=||-||+++|+..-.+.-|.|
T Consensus 16 eGRrv~k~~aV~~P~~~EI~~ 36 (87)
T 1lng_A 16 EGRKVPEELAIEKPSLKDIEK 36 (87)
T ss_dssp TTCCSCTTTCBSSCCHHHHHH
T ss_pred hcCccCHHHhccCCCHHHHHH
Confidence 369999999997555444444
No 6
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=39.77 E-value=7.3 Score=25.62 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.4
Q ss_pred ceEeecCCcceeec
Q 033740 19 NFIRCSNCGKCCPK 32 (112)
Q Consensus 19 ~~V~C~nCgr~vPK 32 (112)
-||+|..||+.+--
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 48999999987743
No 7
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Probab=38.61 E-value=4.5 Score=28.12 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=14.2
Q ss_pred cceeecccceeeeeecccch
Q 033740 27 GKCCPKDKAIKRFLVRNIVE 46 (112)
Q Consensus 27 gr~vPKDKAIKrf~irNiVe 46 (112)
||-|||++|+..-.+..|+|
T Consensus 20 GRRV~k~~aV~nPt~~EI~~ 39 (106)
T 3dlu_A 20 GRIVPRSIAVESPRVEEIVR 39 (106)
T ss_dssp TCCSCTTTSBSSCCHHHHHH
T ss_pred cCccCHHHhccCCCHHHHHH
Confidence 69999999997544444444
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.36 E-value=12 Score=28.29 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=11.9
Q ss_pred ceEeecCCcceeecc
Q 033740 19 NFIRCSNCGKCCPKD 33 (112)
Q Consensus 19 ~~V~C~nCgr~vPKD 33 (112)
..|.|.||||.+=.+
T Consensus 221 ~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 221 DMITCPYCGRILYAE 235 (256)
T ss_dssp SCEECTTTCCEEECS
T ss_pred CEEECCCCCeeEEeC
Confidence 579999999976544
No 9
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=35.38 E-value=8 Score=24.36 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=10.2
Q ss_pred ceEeecCCccee
Q 033740 19 NFIRCSNCGKCC 30 (112)
Q Consensus 19 ~~V~C~nCgr~v 30 (112)
-||+|-.||..+
T Consensus 2 iPVRCFTCGkvi 13 (55)
T 1ef4_A 2 IPVRCLSCGKPV 13 (55)
T ss_dssp CSSSCSCTTSCC
T ss_pred CCeecCCCCCCh
Confidence 389999999866
No 10
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=34.03 E-value=10 Score=24.68 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=10.3
Q ss_pred ceEeecCCccee
Q 033740 19 NFIRCSNCGKCC 30 (112)
Q Consensus 19 ~~V~C~nCgr~v 30 (112)
-||+|-.||..+
T Consensus 3 IPVRCFTCGkvi 14 (66)
T 4ayb_N 3 IPIRCFTCGSLI 14 (66)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCcccCCCcHhH
Confidence 389999999976
No 11
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=33.61 E-value=14 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.9
Q ss_pred eecCCcceeecccceee
Q 033740 22 RCSNCGKCCPKDKAIKR 38 (112)
Q Consensus 22 ~C~nCgr~vPKDKAIKr 38 (112)
-|..|+-.|+.+.||.+
T Consensus 9 aC~~C~c~Vs~~eai~~ 25 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDR 25 (55)
T ss_dssp SSTTCCCCBCTTTSEES
T ss_pred cCCCCeeEechHHhhhc
Confidence 48999999999999963
No 12
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=33.27 E-value=6.2 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=15.7
Q ss_pred cceeecccceeeeeecccchh
Q 033740 27 GKCCPKDKAIKRFLVRNIVEQ 47 (112)
Q Consensus 27 gr~vPKDKAIKrf~irNiVea 47 (112)
||-||++.|+..-.+..|+|+
T Consensus 20 GRRv~k~~aV~nP~~~EI~~a 40 (104)
T 1kvn_A 20 GRRIPRRFAVPNVKLHELVEA 40 (104)
T ss_dssp TCCSCGGGCCSSCCHHHHHHH
T ss_pred CCccCHHHhccCCCHHHHHHH
Confidence 699999999986655555554
No 13
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=30.26 E-value=7.6 Score=27.88 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=14.8
Q ss_pred Ccceeecccceeeeeecccch
Q 033740 26 CGKCCPKDKAIKRFLVRNIVE 46 (112)
Q Consensus 26 Cgr~vPKDKAIKrf~irNiVe 46 (112)
=||-||+++|+..-.+.-|+|
T Consensus 31 eGRRV~k~~aVenPt~~EI~~ 51 (128)
T 1jid_A 31 EGRRIPISKAVENPTATEIQD 51 (128)
T ss_dssp TTCCSCTTTCBSSCCHHHHHH
T ss_pred hcCccCHHHhccCCCHHHHHH
Confidence 369999999997555444444
No 14
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.19 E-value=31 Score=15.36 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=10.3
Q ss_pred ceEeecCCcceeec
Q 033740 19 NFIRCSNCGKCCPK 32 (112)
Q Consensus 19 ~~V~C~nCgr~vPK 32 (112)
++..|+.||+..+.
T Consensus 2 k~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 2 KPYQCDYCGRSFSD 15 (30)
T ss_dssp CCEECTTTCCEESC
T ss_pred cCccCCCCCcccCC
Confidence 46789999986553
No 15
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=25.30 E-value=23 Score=20.52 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=12.2
Q ss_pred CCccceEeecCCcc
Q 033740 15 RGHVNFIRCSNCGK 28 (112)
Q Consensus 15 rGhv~~V~C~nCgr 28 (112)
+++...+.|-|||.
T Consensus 5 ~~~~~~~~C~~Cgk 18 (40)
T 1a6b_B 5 RSQLDRDQCAYCKE 18 (40)
T ss_dssp CCSCCSSSCSSSCC
T ss_pred cCCCCCCeeeECCC
Confidence 67888899999986
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.03 E-value=26 Score=20.71 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.9
Q ss_pred eEeecCCcceeecccceeeeeecccch
Q 033740 20 FIRCSNCGKCCPKDKAIKRFLVRNIVE 46 (112)
Q Consensus 20 ~V~C~nCgr~vPKDKAIKrf~irNiVe 46 (112)
...|..|..-+..+.-..-+.+.||||
T Consensus 59 ~~~CP~Cr~~~~~~~~~~n~~l~~~ve 85 (85)
T 2ecw_A 59 KGNCPVCRVPYPFGNLKPNLHVANIVE 85 (85)
T ss_dssp CBCCTTTCCCCCTTCCEECSCCCSSCC
T ss_pred CCCCCCCCCcCCHHhCCcCHHHHHhhC
Confidence 578999999998887777777777775
No 17
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=24.15 E-value=21 Score=26.29 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.1
Q ss_pred eeeeeEEEeeeec---eecceecc
Q 033740 66 KLYAKMQYCVSCA---IHSHVVRV 86 (112)
Q Consensus 66 KlyvKl~YCvSCA---IHskVVR~ 86 (112)
-||+++.=|..|| ||++|-|+
T Consensus 106 tlYvTlEPC~mCa~Aii~agI~rV 129 (197)
T 2g84_A 106 ELVTSAEPCVMCFGAVIWSGVRSL 129 (197)
T ss_dssp EEEEEECCCHHHHHHHHHHCCSEE
T ss_pred EEEEeCCCCHHHHHHHHHhCcCEE
Confidence 5899999999997 88888765
No 18
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.63 E-value=44 Score=14.89 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=9.6
Q ss_pred ceEeecCCcceee
Q 033740 19 NFIRCSNCGKCCP 31 (112)
Q Consensus 19 ~~V~C~nCgr~vP 31 (112)
++..|..||+...
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 4678999987654
No 19
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.03 E-value=70 Score=16.07 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.4
Q ss_pred cceEeecCCcceeec
Q 033740 18 VNFIRCSNCGKCCPK 32 (112)
Q Consensus 18 v~~V~C~nCgr~vPK 32 (112)
.++..|+.||+....
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQ 24 (44)
T ss_dssp CCSEECSSSSCEESS
T ss_pred CCCeECCCCCchhCC
Confidence 568899999976543
No 20
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.70 E-value=49 Score=14.72 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=9.7
Q ss_pred ceEeecCCcceee
Q 033740 19 NFIRCSNCGKCCP 31 (112)
Q Consensus 19 ~~V~C~nCgr~vP 31 (112)
++..|..||+...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 4678999997654
No 21
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.64 E-value=63 Score=15.41 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=10.3
Q ss_pred cceEeecCCcceee
Q 033740 18 VNFIRCSNCGKCCP 31 (112)
Q Consensus 18 v~~V~C~nCgr~vP 31 (112)
.++..|..||+...
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 35788999997543
No 22
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=58 Score=21.34 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=26.3
Q ss_pred CCCCCCccceEeecCCcceeecccceeeeeecccchh
Q 033740 11 NKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVEQ 47 (112)
Q Consensus 11 ~KkgrGhv~~V~C~nCgr~vPKDKAIKrf~irNiVea 47 (112)
+...+.....-.=-++|.|.-++++.+.|.++|+=+.
T Consensus 19 a~~~~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~ 55 (122)
T 2ys4_A 19 ARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNK 55 (122)
T ss_dssp CCSCCCCCCCCSEECCCSEESSSCEEEEEEEECCSSS
T ss_pred EEcCCcEECCCCeeecCCeecCCeEEEEEEEEECCCC
Confidence 3344444333234678999999999999999997553
No 23
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose) mitosis, antephase checkpoint, cell cycle; HET: PGE ADP ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Probab=20.41 E-value=37 Score=27.03 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=11.7
Q ss_pred eEeecCCcceeec
Q 033740 20 FIRCSNCGKCCPK 32 (112)
Q Consensus 20 ~V~C~nCgr~vPK 32 (112)
-++|++|++.||+
T Consensus 79 H~~C~~C~~~MP~ 91 (261)
T 2xoc_A 79 HALCTCCFQPMPD 91 (261)
T ss_dssp EEECTTTCCEEEC
T ss_pred CcCcCcccCcCCC
Confidence 5679999999998
No 24
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.15 E-value=53 Score=19.67 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=7.3
Q ss_pred ceEeecCCcceee
Q 033740 19 NFIRCSNCGKCCP 31 (112)
Q Consensus 19 ~~V~C~nCgr~vP 31 (112)
.++.|.+||+.++
T Consensus 42 ~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 42 RTELCGNCGRNVL 54 (75)
T ss_dssp CEEECSSSCCEEE
T ss_pred CceEcccCCCcCc
Confidence 4566666665443
No 25
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=20.12 E-value=28 Score=18.19 Aligned_cols=9 Identities=78% Similarity=1.556 Sum_probs=7.4
Q ss_pred eEeecCCcc
Q 033740 20 FIRCSNCGK 28 (112)
Q Consensus 20 ~V~C~nCgr 28 (112)
.+.|.|||.
T Consensus 6 ~~~C~nCgk 14 (29)
T 1nc8_A 6 VIRCWNCGK 14 (29)
T ss_dssp CCBCTTTSC
T ss_pred CCEEEECCc
Confidence 467999997
Done!