Query 033740
Match_columns 112
No_of_seqs 107 out of 183
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 09:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033740.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033740hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 50.8 2.3 0.00016 22.6 0.7 11 18-28 4-14 (29)
2 d1ef4a_ a.4.11.1 (A:) RNA poly 44.9 2.2 0.00016 25.5 0.0 12 20-31 3-14 (55)
3 d1twfj_ a.4.11.1 (J:) RNA poly 43.5 2.8 0.0002 25.7 0.4 12 19-30 3-14 (65)
4 d1lnga_ d.201.1.1 (A:) SRP19 { 37.1 2.3 0.00017 26.9 -0.8 21 27-47 17-37 (87)
5 d1zr9a1 g.37.1.4 (A:28-94) Zin 36.8 3.1 0.00023 25.3 -0.2 14 70-83 14-27 (67)
6 d1kvva_ d.201.1.1 (A:) SRP19 { 29.8 3.5 0.00026 26.7 -0.9 22 27-48 20-41 (104)
7 d1cc1l_ e.18.1.1 (L:) Nickel-i 28.5 3.5 0.00026 31.5 -1.2 9 72-80 479-487 (487)
8 d1e3db_ e.18.1.1 (B:) Nickel-i 27.5 3.8 0.00027 31.7 -1.2 9 72-80 529-537 (537)
9 d1yq9h1 e.18.1.1 (H:7-536) Nic 26.4 4 0.00029 31.2 -1.2 9 72-80 522-530 (530)
10 d2dkta2 g.93.1.1 (A:82-137) RI 25.6 18 0.0013 21.3 1.9 17 17-33 31-47 (56)
11 d1frfl_ e.18.1.1 (L:) Nickel-i 25.6 4.3 0.00031 31.6 -1.2 9 72-80 535-543 (543)
12 d1wuil1 e.18.1.1 (L:19-552) Ni 24.7 4.5 0.00033 31.3 -1.2 9 72-80 526-534 (534)
13 d1twfl_ g.41.9.2 (L:) RBP12 su 22.9 9 0.00066 21.9 0.2 14 18-31 19-32 (46)
14 d1a1ia3 g.37.1.1 (A:160-187) Z 20.8 18 0.0013 18.8 1.1 15 18-32 1-15 (28)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=50.84 E-value=2.3 Score=22.60 Aligned_cols=11 Identities=64% Similarity=1.238 Sum_probs=9.3
Q ss_pred cceEeecCCcc
Q 033740 18 VNFIRCSNCGK 28 (112)
Q Consensus 18 v~~V~C~nCgr 28 (112)
-.+|.|-|||+
T Consensus 4 r~~ikCfNCGk 14 (29)
T d1nc8a_ 4 RKVIRCWNCGK 14 (29)
T ss_dssp CCCCBCTTTSC
T ss_pred cceeEeecCCc
Confidence 45899999997
No 2
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.85 E-value=2.2 Score=25.47 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=10.3
Q ss_pred eEeecCCcceee
Q 033740 20 FIRCSNCGKCCP 31 (112)
Q Consensus 20 ~V~C~nCgr~vP 31 (112)
||||-.||..+-
T Consensus 3 PVRCFTCGkvia 14 (55)
T d1ef4a_ 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CcCcCCCchhHH
Confidence 899999999663
No 3
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.52 E-value=2.8 Score=25.70 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=10.2
Q ss_pred ceEeecCCccee
Q 033740 19 NFIRCSNCGKCC 30 (112)
Q Consensus 19 ~~V~C~nCgr~v 30 (112)
-||||-.||+.+
T Consensus 3 IPVRCFTCgkvi 14 (65)
T d1twfj_ 3 VPVRCFSCGKVV 14 (65)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCcccCCCCcCh
Confidence 389999999965
No 4
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=37.14 E-value=2.3 Score=26.86 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.1
Q ss_pred cceeecccceeeeeecccchh
Q 033740 27 GKCCPKDKAIKRFLVRNIVEQ 47 (112)
Q Consensus 27 gr~vPKDKAIKrf~irNiVea 47 (112)
||.||++.|+..-.+.-|.++
T Consensus 17 GRRv~k~~aV~~P~~~eI~~a 37 (87)
T d1lnga_ 17 GRKVPEELAIEKPSLKDIEKA 37 (87)
T ss_dssp TCCSCTTTCBSSCCHHHHHHH
T ss_pred cCccCHHHHccCCCHHHHHHH
Confidence 699999999986666655554
No 5
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.83 E-value=3.1 Score=25.34 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=11.0
Q ss_pred eEEEeeeeceecce
Q 033740 70 KMQYCVSCAIHSHV 83 (112)
Q Consensus 70 Kl~YCvSCAIHskV 83 (112)
-.+|||.|+-|..-
T Consensus 14 gqfYCv~C~K~F~s 27 (67)
T d1zr9a1 14 GLHRCLACARYFID 27 (67)
T ss_dssp GCSEETTTTEECSS
T ss_pred CEEecccccCccCC
Confidence 45899999988653
No 6
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.78 E-value=3.5 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=17.2
Q ss_pred cceeecccceeeeeecccchhh
Q 033740 27 GKCCPKDKAIKRFLVRNIVEQA 48 (112)
Q Consensus 27 gr~vPKDKAIKrf~irNiVeaa 48 (112)
||.||++.|+..-.+.-|.+++
T Consensus 20 GRRv~k~~aV~~P~~~eI~~a~ 41 (104)
T d1kvva_ 20 GRRIPRRFAVPNVKLHELVEAS 41 (104)
T ss_dssp CCCSCTTTCCSSCCHHHHHHHH
T ss_pred cCccCHHHhcCCCCHHHHHHHH
Confidence 6999999999877766666644
No 7
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=28.47 E-value=3.5 Score=31.49 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.6
Q ss_pred EEeeeecee
Q 033740 72 QYCVSCAIH 80 (112)
Q Consensus 72 ~YCvSCAIH 80 (112)
-=|+|||.|
T Consensus 479 DPCisCa~H 487 (487)
T d1cc1l_ 479 DPCLGCAVH 487 (487)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 459999998
No 8
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=27.49 E-value=3.8 Score=31.72 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=7.0
Q ss_pred EEeeeecee
Q 033740 72 QYCVSCAIH 80 (112)
Q Consensus 72 ~YCvSCAIH 80 (112)
-=|+|||.|
T Consensus 529 DPC~sCa~H 537 (537)
T d1e3db_ 529 DPCIACSTH 537 (537)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 458888888
No 9
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=26.39 E-value=4 Score=31.19 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=6.8
Q ss_pred EEeeeecee
Q 033740 72 QYCVSCAIH 80 (112)
Q Consensus 72 ~YCvSCAIH 80 (112)
-=|+|||+|
T Consensus 522 DPC~sCa~H 530 (530)
T d1yq9h1 522 DPCIACGVH 530 (530)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 458888887
No 10
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.57 E-value=18 Score=21.29 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.5
Q ss_pred ccceEeecCCcceeecc
Q 033740 17 HVNFIRCSNCGKCCPKD 33 (112)
Q Consensus 17 hv~~V~C~nCgr~vPKD 33 (112)
-....||+.|+.|+|+.
T Consensus 31 ~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 31 KEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp GGGEEEETTTTEEEEGG
T ss_pred CccccccCccccccCcc
Confidence 35899999999999874
No 11
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=25.57 E-value=4.3 Score=31.63 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.4
Q ss_pred EEeeeecee
Q 033740 72 QYCVSCAIH 80 (112)
Q Consensus 72 ~YCvSCAIH 80 (112)
-=|+|||.|
T Consensus 535 DPC~sCa~H 543 (543)
T d1frfl_ 535 DPCIACGVH 543 (543)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 459999988
No 12
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.74 E-value=4.5 Score=31.28 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.3
Q ss_pred EEeeeecee
Q 033740 72 QYCVSCAIH 80 (112)
Q Consensus 72 ~YCvSCAIH 80 (112)
-=|+|||+|
T Consensus 526 DPCisCa~H 534 (534)
T d1wuil1 526 DPCIACGVH 534 (534)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 459999988
No 13
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.88 E-value=9 Score=21.95 Aligned_cols=14 Identities=29% Similarity=0.824 Sum_probs=11.1
Q ss_pred cceEeecCCcceee
Q 033740 18 VNFIRCSNCGKCCP 31 (112)
Q Consensus 18 v~~V~C~nCgr~vP 31 (112)
..+|+|-+||--+-
T Consensus 19 ~d~irCreCG~RIl 32 (46)
T d1twfl_ 19 TDAVRCKDCGHRIL 32 (46)
T ss_dssp TSTTCCSSSCCCCC
T ss_pred CCcEEeccCCcEEE
Confidence 36899999997653
No 14
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.77 E-value=18 Score=18.78 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=11.4
Q ss_pred cceEeecCCcceeec
Q 033740 18 VNFIRCSNCGKCCPK 32 (112)
Q Consensus 18 v~~V~C~nCgr~vPK 32 (112)
++|-.|+-||+-.-+
T Consensus 1 EkPf~C~~CgrkFAr 15 (28)
T d1a1ia3 1 EKPFACDICGRKFAR 15 (28)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CCCcccchhhhhhhc
Confidence 367889999986544
Done!