BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033741
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
           Protein Ttha1809 From Thermus Thermophilus Hb8
 pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
           Protein Ttha1809 From Thermus Thermophilus Hb8
          Length = 286

 Score = 30.4 bits (67), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 15  CGHYMKKD--ESYESEFKDTISVFLPLRNGAIID 46
            GHY+  D  E++E  FK+ ++  +P   G ++D
Sbjct: 253 AGHYLWIDAPEAFEEAFKEALAALVPALRGPLVD 286


>pdb|4HAD|A Chain A, Crystal Structure Of Probable Oxidoreductase Protein From
           Rhizobium Etli Cfn 42
 pdb|4HAD|B Chain B, Crystal Structure Of Probable Oxidoreductase Protein From
           Rhizobium Etli Cfn 42
 pdb|4HAD|C Chain C, Crystal Structure Of Probable Oxidoreductase Protein From
           Rhizobium Etli Cfn 42
 pdb|4HAD|D Chain D, Crystal Structure Of Probable Oxidoreductase Protein From
           Rhizobium Etli Cfn 42
          Length = 350

 Score = 26.6 bits (57), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 40  RNGAIIDIESIQILTSPLTNKV--CPSKGTISSFTCSQGATRHMTTQKKSMMEIESVGAA 97
           RN  ++  E+  I  SP+  KV     +G I S    QGA  +      +   I  +G  
Sbjct: 135 RNKVVV-TEAYXITYSPVWQKVRSLIDEGAIGSLRHVQGAFTYFNRDASNXRNIPELGGG 193

Query: 98  GKYDIG 103
           G  DIG
Sbjct: 194 GLPDIG 199


>pdb|3J17|A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron
           Microscopy
          Length = 1058

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 13  LICGHYMKKDESYESEFKDTISV 35
           +IC     +D+S+ES F +TISV
Sbjct: 613 IICDINSYEDQSFESMFSETISV 635


>pdb|3IZ3|A Chain A, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3IZX|A Chain A, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
           Virus
          Length = 1058

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 13  LICGHYMKKDESYESEFKDTISV 35
           +IC     +D+S+ES F +TISV
Sbjct: 613 IICDINSYEDQSFESMFSETISV 635


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,070,124
Number of Sequences: 62578
Number of extensions: 101344
Number of successful extensions: 207
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)