BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033741
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9D2Q3|CJ088_MOUSE Uncharacterized protein C10orf88 homolog OS=Mus musculus PE=2 SV=1
          Length = 444

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 16  GHYMKKDESYESEFKDTISVFLP 38
           GH M ++ S ES+ K+ +S FLP
Sbjct: 294 GHLMPQNHSLESDLKNAVSSFLP 316


>sp|Q492R5|MNMA_BLOPB tRNA-specific 2-thiouridylase MnmA OS=Blochmannia pennsylvanicus
           (strain BPEN) GN=mnmA PE=3 SV=1
          Length = 367

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 26  ESEFKDTISVFLPLRNGAIIDIE 48
           + +FKD IS ++P+R G IIDI 
Sbjct: 204 KRKFKDFISKYIPIRPGVIIDIN 226


>sp|A7I3U8|RIMP_CAMHC Ribosome maturation factor RimP OS=Campylobacter hominis (strain
          ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rimP
          PE=3 SV=1
          Length = 140

 Score = 29.6 bits (65), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 15 CGHYMKKDESYESEFKDTISVFLPLRNGA-IIDIESIQILTSPLTNKVCPSKGTISSFTC 73
          CG     DE      +    V++  +NG  + D E++  L SP+ +   P+ G  +    
Sbjct: 11 CGVKFYADELISENSRQIYRVYITKKNGVNLDDCEALSRLLSPILDVEPPTSGAFTLEVS 70

Query: 74 SQGATRHMTT 83
          S G  R +TT
Sbjct: 71 SPGLERKLTT 80


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,059,003
Number of Sequences: 539616
Number of extensions: 1308656
Number of successful extensions: 2730
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2726
Number of HSP's gapped (non-prelim): 9
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)