Query 033741
Match_columns 112
No_of_seqs 38 out of 40
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 09:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j9j_A Stationary phase surviV 98.9 9.1E-10 3.1E-14 86.1 3.2 59 2-62 87-173 (247)
2 2phj_A 5'-nucleotidase SURE; S 98.8 1.2E-09 4.1E-14 86.1 3.3 61 2-62 86-175 (251)
3 2e6c_A 5'-nucleotidase SURE; S 98.8 2.3E-09 7.8E-14 83.7 3.6 57 2-62 88-172 (244)
4 3ty2_A 5'-nucleotidase SURE; s 98.8 2.4E-09 8.1E-14 85.2 3.7 61 2-62 94-183 (261)
5 2wqk_A 5'-nucleotidase SURE; S 98.7 7.3E-09 2.5E-13 80.5 3.1 61 2-62 86-175 (251)
6 2v4n_A Multifunctional protein 98.7 1E-08 3.5E-13 80.6 4.0 61 2-62 85-172 (254)
7 1l5x_A SurviVal protein E; str 98.6 1.9E-08 6.3E-13 80.1 2.4 56 2-57 85-177 (280)
8 2jxp_A Putative lipoprotein B; 18.4 27 0.00091 24.1 0.1 15 15-30 1-15 (155)
9 2pqn_B Mitochondrial division 17.8 63 0.0021 20.6 1.8 22 25-46 27-48 (54)
10 2rqr_A CED-12 homolog, engulfm 16.2 39 0.0013 22.6 0.5 14 44-57 9-22 (119)
No 1
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=98.86 E-value=9.1e-10 Score=86.13 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=48.5
Q ss_pred eeEEEecccCCCCcccee----------------------ecCCCchhhhhhhhhhhhhhHHHHhhh-cc-----ccccC
Q 033741 2 IFLVIGGINQGLICGHYM----------------------KKDESYESEFKDTISVFLPLRNGAIID-IE-----SIQIL 53 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h~----------------------kk~eS~e~DFkdAa~vcLPLInAal~d-Ie-----NI~iP 53 (112)
+||||||||.|.|+|..+ --+..++.||+.|+.++..|+..++.. ++ ||+||
T Consensus 87 PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~~~aa~~~~~lv~~l~~~~lp~~~~lNVN~P 166 (247)
T 1j9j_A 87 VDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVP 166 (247)
T ss_dssp CSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCSSSCCHHHHHHHHHHHHHHCCGGGSCTTCEEEEEEC
T ss_pred CCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCCcccEEEecCC
Confidence 799999999999999997 111223458999999999999999876 44 99999
Q ss_pred CCccCCCcC
Q 033741 54 TSPLTNKVC 62 (112)
Q Consensus 54 t~p~~nKGf 62 (112)
+...||+
T Consensus 167 --~~~~~g~ 173 (247)
T 1j9j_A 167 --AGEIKGW 173 (247)
T ss_dssp --SSCCCEE
T ss_pred --ccccCce
Confidence 7778886
No 2
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=98.84 E-value=1.2e-09 Score=86.13 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=49.6
Q ss_pred eeEEEecccCCCCcccee----------------------ecCCCchhhhhhhhhhhhhhHHHHhhh-cc-----ccccC
Q 033741 2 IFLVIGGINQGLICGHYM----------------------KKDESYESEFKDTISVFLPLRNGAIID-IE-----SIQIL 53 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h~----------------------kk~eS~e~DFkdAa~vcLPLInAal~d-Ie-----NI~iP 53 (112)
+||||||||.|.|+|..+ --+...+.||+.|+.++..|+..++.. ++ ||+||
T Consensus 86 PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~~~aa~~~~~lv~~l~~~~lp~~~~lNVN~P 165 (251)
T 2phj_A 86 PDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAFGRENIMFEEIAKVCVDIVKKVLNEGIPEDTYLNVNIP 165 (251)
T ss_dssp CSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCCCTTEEEEEEEE
T ss_pred CCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 699999999999999987 111223458999999999999999874 44 99999
Q ss_pred CCc-cCCCcC
Q 033741 54 TSP-LTNKVC 62 (112)
Q Consensus 54 t~p-~~nKGf 62 (112)
..| ...||+
T Consensus 166 ~~~~~~~kgi 175 (251)
T 2phj_A 166 NLRYEEIKGI 175 (251)
T ss_dssp SSCGGGCCEE
T ss_pred CCCccccCCE
Confidence 865 467887
No 3
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=98.80 E-value=2.3e-09 Score=83.74 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=46.7
Q ss_pred eeEEEecccCCCCcccee-----------------------ecCCCchhhhhhhhhhhhhhHHHHhhhcc-----ccccC
Q 033741 2 IFLVIGGINQGLICGHYM-----------------------KKDESYESEFKDTISVFLPLRNGAIIDIE-----SIQIL 53 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h~-----------------------kk~eS~e~DFkdAa~vcLPLInAal~dIe-----NI~iP 53 (112)
+||||||||.|.|+|..+ -...+.+.||+.|+.++..||..++.. + ||+||
T Consensus 88 PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~~~~aa~~~~~li~~l~~~-p~~~~lNVN~P 166 (244)
T 2e6c_A 88 VDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVPLNGEVPDFAGLRPWLLRTLETLLRL-ERPFLVNVNLP 166 (244)
T ss_dssp CCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEECCSSSCCCHHHHHHHHHHHHHHHTTS-CSSCEEEEECC
T ss_pred CCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHhC-CcCcEEEeeCC
Confidence 799999999999999997 111112248999999999999999988 6 99999
Q ss_pred CCccCCCcC
Q 033741 54 TSPLTNKVC 62 (112)
Q Consensus 54 t~p~~nKGf 62 (112)
...||+
T Consensus 167 ---~~~~g~ 172 (244)
T 2e6c_A 167 ---LRPKGF 172 (244)
T ss_dssp ---SSCCEE
T ss_pred ---CccCCe
Confidence 456776
No 4
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=98.80 E-value=2.4e-09 Score=85.18 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=49.8
Q ss_pred eeEEEecccCCCCcccee----------------------ecCCCchhhhhhhhhhhhhhHHHHhhh-cc-----ccccC
Q 033741 2 IFLVIGGINQGLICGHYM----------------------KKDESYESEFKDTISVFLPLRNGAIID-IE-----SIQIL 53 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h~----------------------kk~eS~e~DFkdAa~vcLPLInAal~d-Ie-----NI~iP 53 (112)
+||||||||.|.|+|..+ --....+.||+.|+.++..|+..++.. ++ ||+||
T Consensus 94 PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~~~aa~~~~~lv~~l~~~~lp~~~~lNVN~P 173 (261)
T 3ty2_A 94 PDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSLGGELFRYYETAAKVVYQLIQRIEKDPLPPSTILNINVP 173 (261)
T ss_dssp CSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEECSSSCCCHHHHHHHHHHHHHHHHHSCCCTTCEEEEEEC
T ss_pred CCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence 699999999999999887 111234568999999999999999875 34 99999
Q ss_pred CCcc-CCCcC
Q 033741 54 TSPL-TNKVC 62 (112)
Q Consensus 54 t~p~-~nKGf 62 (112)
..|. ..||+
T Consensus 174 ~~~~~~~kGi 183 (261)
T 3ty2_A 174 DLPYEELKGF 183 (261)
T ss_dssp SSCGGGCCEE
T ss_pred CCCcccCCce
Confidence 9764 57887
No 5
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=98.68 E-value=7.3e-09 Score=80.49 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=48.6
Q ss_pred eeEEEecccCCCCcccee----------------------ecCCCchhhhhhhhhhhhhhHHHHhhhcc------ccccC
Q 033741 2 IFLVIGGINQGLICGHYM----------------------KKDESYESEFKDTISVFLPLRNGAIIDIE------SIQIL 53 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h~----------------------kk~eS~e~DFkdAa~vcLPLInAal~dIe------NI~iP 53 (112)
+||||||||.|.|+|..+ --......||..|+.++..++..++..-- ||+||
T Consensus 86 PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~~~~~~~~~~a~~~~~~ii~~ll~~~~~~~~~lNVN~P 165 (251)
T 2wqk_A 86 PDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAFGRENIMFEEIAKVCVDIVKKVLNEGIPEDTYLNVNIP 165 (251)
T ss_dssp CSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCCCTTEEEEEEEE
T ss_pred CCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcccCCCcchHHHHHHHHHHHHHHHHhCCccccccccccC
Confidence 699999999999999987 11123457899999999999999886533 99999
Q ss_pred CCccC-CCcC
Q 033741 54 TSPLT-NKVC 62 (112)
Q Consensus 54 t~p~~-nKGf 62 (112)
..|.. -||+
T Consensus 166 ~~~~~~~~g~ 175 (251)
T 2wqk_A 166 NLRYEEIKGI 175 (251)
T ss_dssp SSCGGGCCEE
T ss_pred CCCccccCce
Confidence 87654 4776
No 6
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=98.68 E-value=1e-08 Score=80.61 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=48.9
Q ss_pred eeEEEecccCCCCcccee-------------ecC-----CCc--hhhhhhhhhhhhhhHHHHhhh-cc-----ccccCCC
Q 033741 2 IFLVIGGINQGLICGHYM-------------KKD-----ESY--ESEFKDTISVFLPLRNGAIID-IE-----SIQILTS 55 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h~-------------kk~-----eS~--e~DFkdAa~vcLPLInAal~d-Ie-----NI~iPt~ 55 (112)
+||||||||.|.|+|..+ ..| -|. ..||+.|+.++..|+...+.. ++ ||+||..
T Consensus 85 PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~aa~~~~~li~~l~~~~lp~~~~lNVN~P~~ 164 (254)
T 2v4n_A 85 PDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDL 164 (254)
T ss_dssp CSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEESSSSCHHHHHHHHHHHHHHHHHSCCCSCSEEEEEECSS
T ss_pred CCEeeeCCcCCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecCcccCHHHHHHHHHHHHHHHHHcCCCccceEEecCCCC
Confidence 799999999999999997 111 111 149999999999999998875 33 9999997
Q ss_pred c-cCCCcC
Q 033741 56 P-LTNKVC 62 (112)
Q Consensus 56 p-~~nKGf 62 (112)
| ...||+
T Consensus 165 ~~~~~kg~ 172 (254)
T 2v4n_A 165 PLAQVKGI 172 (254)
T ss_dssp CGGGCCCE
T ss_pred CcccCCce
Confidence 6 468887
No 7
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=98.57 E-value=1.9e-08 Score=80.07 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=44.8
Q ss_pred eeEEEecccCCCCccce-e-----------------------e--cCCCch----hhhhhhhhhhhhhHHHHhhh-cc--
Q 033741 2 IFLVIGGINQGLICGHY-M-----------------------K--KDESYE----SEFKDTISVFLPLRNGAIID-IE-- 48 (112)
Q Consensus 2 ~~LVISGIN~GsnCG~h-~-----------------------k--k~eS~e----~DFkdAa~vcLPLInAal~d-Ie-- 48 (112)
+||||||||.|.|+|.. + - ++...+ .||+.|+.++..|+..++.. ++
T Consensus 85 PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~~~~~~~~~~~~~~~~~aa~~~~~lv~~l~~~~lp~~ 164 (280)
T 1l5x_A 85 YDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQG 164 (280)
T ss_dssp CSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEECCSCHHHHHTCHHHHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred CCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEccccCCCcccccccCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 79999999999999999 5 1 011122 38999999999999999875 33
Q ss_pred ----ccccCCCcc
Q 033741 49 ----SIQILTSPL 57 (112)
Q Consensus 49 ----NI~iPt~p~ 57 (112)
||+||..|.
T Consensus 165 ~d~LNVN~P~~~~ 177 (280)
T 1l5x_A 165 VDVISVNFPRRLG 177 (280)
T ss_dssp CSEEEEEECSCCC
T ss_pred CceEEecCCCCCC
Confidence 999999885
No 8
>2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=18.40 E-value=27 Score=24.11 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=9.2
Q ss_pred ccceeecCCCchhhhh
Q 033741 15 CGHYMKKDESYESEFK 30 (112)
Q Consensus 15 CG~h~kk~eS~e~DFk 30 (112)
||||+ +|.+.+.+|+
T Consensus 1 CGFhL-rG~~~~~~~~ 15 (155)
T 2jxp_A 1 MGFKL-RGQVSELPFE 15 (155)
T ss_dssp CCCCC-CCCSSCCSCC
T ss_pred CCcee-CCCCCCCCce
Confidence 99999 5643333443
No 9
>2pqn_B Mitochondrial division protein 1; TPR domain, protein-protein complex, apoptosis; 2.15A {Saccharomyces cerevisiae}
Probab=17.78 E-value=63 Score=20.59 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=15.0
Q ss_pred chhhhhhhhhhhhhhHHHHhhh
Q 033741 25 YESEFKDTISVFLPLRNGAIID 46 (112)
Q Consensus 25 ~e~DFkdAa~vcLPLInAal~d 46 (112)
++.-+=.--++.||+||-.|..
T Consensus 27 ~epSLfQGFeaSLPiinetie~ 48 (54)
T 2pqn_B 27 KETSLFQGFKSYLPIAELAIEN 48 (54)
T ss_pred CCchHHhhhhhhhhHHHHHHHh
Confidence 3334445567899999988753
No 10
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=16.21 E-value=39 Score=22.61 Aligned_cols=14 Identities=43% Similarity=0.771 Sum_probs=10.8
Q ss_pred hhhccccccCCCcc
Q 033741 44 IIDIESIQILTSPL 57 (112)
Q Consensus 44 l~dIeNI~iPt~p~ 57 (112)
|-|+|+++||+.|.
T Consensus 9 ~~~~~~~~iP~~pP 22 (119)
T 2rqr_A 9 LLDLENIQIPDAPP 22 (119)
T ss_dssp CCSSCCCCCCSSCC
T ss_pred eecccCCCCCCCCC
Confidence 45889999999553
Done!