Query 033742
Match_columns 112
No_of_seqs 118 out of 1114
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 4.6E-26 1E-30 148.1 10.8 90 22-111 11-100 (100)
2 KOG0014 MADS box transcription 97.3 8.2E-05 1.8E-09 52.7 0.5 73 28-100 112-189 (195)
3 PF06005 DUF904: Protein of un 95.9 0.11 2.4E-06 31.7 7.7 45 57-106 1-45 (72)
4 PRK15422 septal ring assembly 92.7 1.3 2.8E-05 27.6 7.1 40 57-101 1-40 (79)
5 PF06698 DUF1192: Protein of u 92.6 0.24 5.1E-06 29.2 3.6 31 48-78 12-42 (59)
6 COG3074 Uncharacterized protei 91.7 1.9 4.2E-05 26.3 7.2 41 57-102 1-41 (79)
7 cd07429 Cby_like Chibby, a nuc 87.9 1 2.2E-05 29.7 3.8 24 87-110 73-96 (108)
8 PRK13169 DNA replication intia 87.6 6.1 0.00013 26.0 7.5 47 59-110 7-53 (110)
9 PF06156 DUF972: Protein of un 87.4 6.2 0.00013 25.8 7.5 46 59-109 7-52 (107)
10 PF01166 TSC22: TSC-22/dip/bun 87.1 2.1 4.5E-05 25.2 4.4 28 82-109 17-44 (59)
11 PF07106 TBPIP: Tat binding pr 81.7 15 0.00032 25.5 7.7 22 57-78 109-130 (169)
12 smart00338 BRLZ basic region l 80.6 9 0.00019 22.3 5.7 36 71-110 15-50 (65)
13 PF00170 bZIP_1: bZIP transcri 78.6 11 0.00023 21.9 5.8 34 72-109 16-49 (64)
14 PHA03155 hypothetical protein; 75.5 21 0.00045 23.7 8.2 61 22-82 7-67 (115)
15 KOG4797 Transcriptional regula 71.9 9.8 0.00021 25.2 4.2 25 83-107 71-95 (123)
16 PF07716 bZIP_2: Basic region 70.1 17 0.00037 20.4 5.8 36 71-110 14-49 (54)
17 PF14645 Chibby: Chibby family 69.3 9.2 0.0002 25.4 3.7 25 86-110 71-95 (116)
18 KOG4797 Transcriptional regula 68.0 32 0.0007 22.8 6.4 46 63-108 44-89 (123)
19 PF13758 Prefoldin_3: Prefoldi 68.0 19 0.00041 23.4 4.8 18 25-42 7-24 (99)
20 PF06156 DUF972: Protein of un 67.3 22 0.00047 23.2 5.2 31 79-109 15-45 (107)
21 COG2433 Uncharacterized conser 66.5 83 0.0018 26.9 10.4 49 60-108 450-503 (652)
22 COG4467 Regulator of replicati 65.4 37 0.0008 22.5 7.0 46 59-109 7-52 (114)
23 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.6 45 0.00098 22.2 10.6 29 83-111 102-130 (132)
24 TIGR02449 conserved hypothetic 60.1 35 0.00076 20.4 7.3 49 61-109 1-51 (65)
25 PF10504 DUF2452: Protein of u 59.8 58 0.0013 22.9 7.5 44 58-101 28-74 (159)
26 PRK13169 DNA replication intia 59.0 32 0.0007 22.6 4.8 29 80-108 16-44 (110)
27 TIGR02338 gimC_beta prefoldin, 54.5 56 0.0012 21.0 7.5 45 65-110 61-105 (110)
28 PRK00888 ftsB cell division pr 53.7 51 0.0011 21.3 5.1 22 87-108 35-56 (105)
29 PF10226 DUF2216: Uncharacteri 53.6 84 0.0018 22.8 7.0 31 78-108 47-77 (195)
30 KOG1962 B-cell receptor-associ 53.5 89 0.0019 23.1 8.0 53 58-110 156-210 (216)
31 PF09744 Jnk-SapK_ap_N: JNK_SA 52.5 78 0.0017 22.1 9.9 23 85-107 88-110 (158)
32 PF05812 Herpes_BLRF2: Herpesv 51.7 71 0.0015 21.4 8.1 57 25-81 5-65 (118)
33 PF09789 DUF2353: Uncharacteri 50.9 1.2E+02 0.0026 23.7 8.9 74 32-110 32-110 (319)
34 PHA03162 hypothetical protein; 50.9 78 0.0017 21.6 8.1 58 25-82 15-76 (135)
35 PF06005 DUF904: Protein of un 50.5 55 0.0012 19.8 5.4 28 80-107 12-39 (72)
36 PF04849 HAP1_N: HAP1 N-termin 48.9 27 0.00059 27.1 3.7 50 60-109 97-183 (306)
37 KOG3366 Mitochondrial F1F0-ATP 47.0 91 0.002 22.2 5.8 15 57-71 109-123 (172)
38 PF10211 Ax_dynein_light: Axon 46.7 1E+02 0.0023 21.9 9.7 60 33-98 123-182 (189)
39 PRK10884 SH3 domain-containing 46.0 1.1E+02 0.0025 22.1 7.8 74 30-108 93-168 (206)
40 PRK13729 conjugal transfer pil 45.7 99 0.0021 25.5 6.5 43 63-110 79-121 (475)
41 PRK11637 AmiB activator; Provi 45.1 1.6E+02 0.0034 23.4 11.0 71 28-107 52-124 (428)
42 PF15243 ANAPC15: Anaphase-pro 44.0 34 0.00075 21.8 3.0 22 60-81 28-49 (92)
43 PF11629 Mst1_SARAH: C termina 43.5 56 0.0012 18.4 3.5 25 54-78 5-33 (49)
44 PF03980 Nnf1: Nnf1 ; InterPr 42.4 89 0.0019 19.9 5.4 36 76-111 70-105 (109)
45 PF08317 Spc7: Spc7 kinetochor 42.2 1.6E+02 0.0034 22.7 11.8 58 52-109 201-260 (325)
46 PF14775 NYD-SP28_assoc: Sperm 41.3 72 0.0016 18.5 4.6 23 27-49 37-59 (60)
47 PF05557 MAD: Mitotic checkpoi 40.9 2.3E+02 0.005 24.2 9.8 68 27-95 563-640 (722)
48 PRK10884 SH3 domain-containing 40.5 1.4E+02 0.0031 21.7 10.7 13 28-40 98-110 (206)
49 PF04880 NUDE_C: NUDE protein, 40.5 78 0.0017 22.4 4.7 42 62-108 2-46 (166)
50 KOG0930 Guanine nucleotide exc 40.1 78 0.0017 24.7 4.9 43 54-105 8-50 (395)
51 PF04977 DivIC: Septum formati 39.9 77 0.0017 18.5 5.1 26 85-110 23-48 (80)
52 PF06937 EURL: EURL protein; 39.6 54 0.0012 25.1 3.9 43 41-83 203-245 (285)
53 cd00632 Prefoldin_beta Prefold 38.3 1E+02 0.0023 19.5 8.6 97 2-109 2-100 (105)
54 KOG3119 Basic region leucine z 38.3 97 0.0021 23.3 5.2 23 84-106 227-249 (269)
55 PF05529 Bap31: B-cell recepto 37.0 1.5E+02 0.0032 20.8 7.5 51 60-110 125-185 (192)
56 KOG4643 Uncharacterized coiled 33.5 3.2E+02 0.0069 25.1 8.1 52 58-109 234-287 (1195)
57 PF12537 DUF3735: Protein of u 33.4 97 0.0021 18.5 3.7 25 59-83 47-71 (72)
58 KOG3759 Uncharacterized RUN do 33.2 2.9E+02 0.0063 23.1 8.4 48 52-102 197-250 (621)
59 PRK09343 prefoldin subunit bet 33.1 1.4E+02 0.0031 19.6 8.8 41 68-109 68-108 (121)
60 KOG0709 CREB/ATF family transc 32.1 92 0.002 25.6 4.4 23 56-78 233-255 (472)
61 PF04508 Pox_A_type_inc: Viral 31.6 67 0.0014 15.2 2.5 15 31-45 2-16 (23)
62 TIGR00012 L29 ribosomal protei 31.6 1E+02 0.0022 17.4 3.6 27 53-79 1-27 (55)
63 PF15058 Speriolin_N: Sperioli 31.6 1.2E+02 0.0026 22.1 4.5 28 80-108 13-40 (200)
64 PF12252 SidE: Dot/Icm substra 30.2 4.2E+02 0.0091 24.7 8.2 51 26-77 1127-1177(1439)
65 cd08888 SRPBCC_PITPNA-B_like L 30.2 73 0.0016 24.2 3.3 39 39-77 217-257 (258)
66 smart00787 Spc7 Spc7 kinetocho 29.8 2.6E+02 0.0057 21.6 11.6 77 33-109 175-255 (312)
67 PF11365 DUF3166: Protein of u 29.8 1.6E+02 0.0034 19.0 4.5 28 83-110 12-39 (96)
68 PF10224 DUF2205: Predicted co 29.5 1.4E+02 0.0031 18.4 4.5 24 85-108 36-59 (80)
69 TIGR02209 ftsL_broad cell divi 29.2 1.3E+02 0.0028 17.9 4.9 28 83-110 28-55 (85)
70 PF03250 Tropomodulin: Tropomo 29.0 38 0.00082 23.5 1.5 17 54-70 21-37 (147)
71 PF07558 Shugoshin_N: Shugoshi 28.4 76 0.0017 17.4 2.5 31 80-110 15-45 (46)
72 PHA02109 hypothetical protein 28.1 1.7E+02 0.0037 21.2 4.8 32 37-71 171-204 (233)
73 PF02151 UVR: UvrB/uvrC motif; 27.8 95 0.0021 15.8 4.2 33 61-93 3-35 (36)
74 PF04999 FtsL: Cell division p 26.9 1.6E+02 0.0035 18.1 4.9 30 81-110 37-66 (97)
75 PF04849 HAP1_N: HAP1 N-termin 26.8 3.1E+02 0.0067 21.4 8.7 27 84-110 239-265 (306)
76 PF04740 LXG: LXG domain of WX 26.6 2.3E+02 0.0049 19.8 8.3 54 28-81 104-159 (204)
77 PF11460 DUF3007: Protein of u 25.8 62 0.0013 21.2 2.0 19 52-70 85-103 (104)
78 PF10802 DUF2540: Protein of u 25.8 51 0.0011 20.3 1.5 13 2-14 52-64 (75)
79 TIGR02894 DNA_bind_RsfA transc 25.3 2.5E+02 0.0054 19.8 11.0 56 54-109 77-134 (161)
80 PF09798 LCD1: DNA damage chec 25.1 4.5E+02 0.0098 22.7 7.9 49 61-109 5-56 (654)
81 KOG4603 TBP-1 interacting prot 25.1 2.7E+02 0.0058 20.1 5.9 52 25-76 81-135 (201)
82 KOG3584 cAMP response element 24.8 1.5E+02 0.0032 23.2 4.2 41 65-110 296-336 (348)
83 smart00340 HALZ homeobox assoc 24.4 1.4E+02 0.0029 16.4 3.4 22 89-110 8-29 (44)
84 PF15619 Lebercilin: Ciliary p 24.0 2.8E+02 0.006 19.9 7.7 23 88-110 166-188 (194)
85 PF07544 Med9: RNA polymerase 23.3 1.9E+02 0.0041 17.7 3.9 42 27-71 25-70 (83)
86 PF01093 Clusterin: Clusterin; 23.1 3.8E+02 0.0081 22.0 6.4 27 54-80 3-29 (436)
87 PRK00306 50S ribosomal protein 22.9 1.5E+02 0.0032 17.3 3.2 28 52-79 4-31 (66)
88 PF09755 DUF2046: Uncharacteri 22.9 3.7E+02 0.0081 21.0 6.7 76 33-109 23-100 (310)
89 PF04111 APG6: Autophagy prote 22.7 3.6E+02 0.0078 20.7 10.7 14 30-43 50-63 (314)
90 PF04645 DUF603: Protein of un 22.6 3E+02 0.0065 19.7 8.9 64 24-91 106-169 (181)
91 cd01109 HTH_YyaN Helix-Turn-He 22.6 2.1E+02 0.0047 18.1 6.4 54 56-110 57-110 (113)
92 PF07407 Seadorna_VP6: Seadorn 22.0 3E+02 0.0064 22.0 5.4 35 52-98 24-58 (420)
93 PRK13923 putative spore coat p 21.9 3E+02 0.0065 19.5 5.4 9 54-62 100-108 (170)
94 PF00831 Ribosomal_L29: Riboso 21.8 94 0.002 17.7 2.1 29 53-81 3-31 (58)
95 PF08172 CASP_C: CASP C termin 21.3 2.2E+02 0.0047 21.3 4.5 26 86-111 107-132 (248)
96 PRK04778 septation ring format 21.3 4.8E+02 0.01 21.7 10.1 44 35-78 228-274 (569)
97 COG0216 PrfA Protein chain rel 21.2 4.3E+02 0.0094 21.1 9.7 89 2-105 10-102 (363)
98 KOG4005 Transcription factor X 20.7 3.6E+02 0.0079 20.5 5.4 55 53-108 60-119 (292)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.94 E-value=4.6e-26 Score=148.14 Aligned_cols=90 Identities=37% Similarity=0.508 Sum_probs=86.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 22 SLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEE 101 (112)
Q Consensus 22 ~~~~~~~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~ee 101 (112)
+...++|..++++|+.+++.|+..+||++|+||++||++||.+||++|+.||.+||++|+++|+++|..+++|+..+.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 033742 102 NLRLKQHFIW 111 (112)
Q Consensus 102 n~~L~~~~~~ 111 (112)
|..|+.+++.
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=97.26 E-value=8.2e-05 Score=52.69 Aligned_cols=73 Identities=32% Similarity=0.361 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHH---HhhcchhcCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 033742 28 ESSTYAILSKEMADRTR---ELRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLTE 100 (112)
Q Consensus 28 ~~~e~~~l~~~~~~L~~---~~R~l~GedL~~Ls~-~eL~~LE~qLe~al~~IR~rK~~ll~~~i~-~lk~ke~~l~e 100 (112)
+......+....+.+.. ..++++|+++.++++ .+|..++.+++.++..+|..+...+..++. .++.+...+..
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEA 189 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccc
Confidence 34455666777777664 499999999999999 999999999999999999999988887776 55555544443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.91 E-value=0.11 Score=31.75 Aligned_cols=45 Identities=29% Similarity=0.444 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106 (112)
Q Consensus 57 Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~ 106 (112)
+|++-|.+||..+..|+..|..=+. ++..|+.+...|.++|..|.
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq~-----e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQM-----ENEELKEKNNELKEENEELK 45 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 4788999999999999999875444 45666666444444444433
No 4
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.72 E-value=1.3 Score=27.59 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEE 101 (112)
Q Consensus 57 Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~ee 101 (112)
+|++=|.+||..+..|+..|- ++.-+|+.|+.|...|.++
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999984 5555678888776555554
No 5
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=92.61 E-value=0.24 Score=29.23 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=25.4
Q ss_pred cchhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033742 48 QMKGEELQELNMEELMRLEKSLEGGLSRVVQ 78 (112)
Q Consensus 48 ~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~ 78 (112)
+..|+||+.||+.||..==..|+.=+.++++
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999877777776666664
No 6
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.74 E-value=1.9 Score=26.30 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEEN 102 (112)
Q Consensus 57 Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een 102 (112)
+|++=|..||..+..|+..| .++.-+|+.|+.|...|..+-
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHH
Confidence 57888999999999999887 455566777777665444433
No 7
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=87.91 E-value=1 Score=29.72 Aligned_cols=24 Identities=42% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 87 EIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 87 ~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.+..++++...|+|||+.|+-|++
T Consensus 73 e~~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999988875
No 8
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.62 E-value=6.1 Score=26.05 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 59 ~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
++-+.+||+++..-+..+..-|.++ ..+-.....|.-||..|+..+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999888887777666543 4555566667777777776654
No 9
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.40 E-value=6.2 Score=25.83 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 59 ~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
++.+..||+++..-+..|.+-|.++ ..+-.....|.-||..|+..+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887777776655543 445555566666777666655
No 10
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.11 E-value=2.1 Score=25.15 Aligned_cols=28 Identities=43% Similarity=0.483 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 82 ERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 82 ~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
+.+.++|..|..+...|+.||..|+..+
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677889999999999999999998753
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.74 E-value=15 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 033742 57 LNMEELMRLEKSLEGGLSRVVQ 78 (112)
Q Consensus 57 Ls~~eL~~LE~qLe~al~~IR~ 78 (112)
+|..||..-=.+|+.-+..+.+
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444444444444333
No 12
>smart00338 BRLZ basic region leucin zipper.
Probab=80.62 E-value=9 Score=22.27 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 71 ~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.|..+.|.+|... +..|..++..|..+|..|..++.
T Consensus 15 ~aA~~~R~rKk~~----~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 15 EAARRSRERKKAE----IEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567776654 46666666666666666666543
No 13
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.55 E-value=11 Score=21.92 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 72 al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
|-.+.|.||...+ ..|..++..|..+|..|...+
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777654 555555555555555555443
No 14
>PHA03155 hypothetical protein; Provisional
Probab=75.50 E-value=21 Score=23.75 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=47.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 22 SLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE 82 (112)
Q Consensus 22 ~~~~~~~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ 82 (112)
+..++.+..++.+|+-+|..|.+.+++=.+.+=..|+..+=.-+=...-.+|...=++|.+
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe 67 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIR 67 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778899999999999999999887777767799988887777777777765555443
No 15
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=71.89 E-value=9.8 Score=25.19 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 83 RLLNEIDALRRKEAQLTEENLRLKQ 107 (112)
Q Consensus 83 ll~~~i~~lk~ke~~l~een~~L~~ 107 (112)
.+.++|..|..+...|+.||..|+.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666654
No 16
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.08 E-value=17 Score=20.38 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 71 ~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.|..+-|.+|-.. +..+...+..|..+|..|..++.
T Consensus 14 ~AA~r~R~rkk~~----~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 14 EAARRSRQRKKQR----EEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666553 46677777777788877777664
No 17
>PF14645 Chibby: Chibby family
Probab=69.28 E-value=9.2 Score=25.36 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 86 NEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 86 ~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.....++++.+.|.+||+.|+-+++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888887754
No 18
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.01 E-value=32 Score=22.78 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 63 MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 63 ~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
..+...++.|+.-|.+.=+=-..++++.|+.+.+.|.+.|..|...
T Consensus 44 vaIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 44 VAIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred EeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788777654333233479999999999999999999875
No 19
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=68.00 E-value=19 Score=23.39 Aligned_cols=18 Identities=22% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 033742 25 LQLESSTYAILSKEMADR 42 (112)
Q Consensus 25 ~~~~~~e~~~l~~~~~~L 42 (112)
.+-|.+||+.|+.+++.|
T Consensus 7 Wq~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 7 WQTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 567889999999999888
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.32 E-value=22 Score=23.23 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 79 TKGERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 79 rK~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
.....|.+++..|+.....+.+||..|+-..
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999998753
No 21
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.50 E-value=83 Score=26.89 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 60 EELMRLEKSLEGGLSRVV-----QTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 60 ~eL~~LE~qLe~al~~IR-----~rK~~ll~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
.++..|+.+|+..-.+++ .++.+.+...|..|+++-..-...-..|..+
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888877776 3444455567777766544433333334433
No 22
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=65.43 E-value=37 Score=22.46 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 59 ~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
++.+..||.+|-.-+..|-.-|.++ .++=.....|.-||..|+..+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHh
Confidence 4667888888877777766655543 344444555666666666554
No 23
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.62 E-value=45 Score=22.18 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033742 83 RLLNEIDALRRKEAQLTEENLRLKQHFIW 111 (112)
Q Consensus 83 ll~~~i~~lk~ke~~l~een~~L~~~~~~ 111 (112)
.+..+|..++.+...|...|+.|..+|+.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999874
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.07 E-value=35 Score=20.39 Aligned_cols=49 Identities=31% Similarity=0.304 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 61 ELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 61 eL~~LE~qLe~al~~IR~rK~~--ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
+|..||..++.=+.....=+.+ ++.++...+...-..|.+.|..=+.+|
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888877765433322 334444444444444444444444443
No 25
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=59.84 E-value=58 Score=22.90 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 033742 58 NMEELMRLEKSLEGGLSRVVQT---KGERLLNEIDALRRKEAQLTEE 101 (112)
Q Consensus 58 s~~eL~~LE~qLe~al~~IR~r---K~~ll~~~i~~lk~ke~~l~ee 101 (112)
+..||..|=++++.|..-||++ |-.++.+||..|+..-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999954 6778889999999876655543
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.95 E-value=32 Score=22.62 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 80 KGERLLNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 80 K~~ll~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
....+..++..|+.....+.++|..|+-.
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999865
No 27
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.47 E-value=56 Score=21.00 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 65 LEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 65 LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
+++..+.++..+..+.. .+...|..+.++...+...-..+...+.
T Consensus 61 v~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666 3467777777777777776666665543
No 28
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.66 E-value=51 Score=21.29 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033742 87 EIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 87 ~i~~lk~ke~~l~een~~L~~~ 108 (112)
++..++.+...+..+|..|..+
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 29
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=53.59 E-value=84 Score=22.81 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 78 QTKGERLLNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 78 ~rK~~ll~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
.|+-+....+|..|+.-...|+++|..|+.-
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888888888763
No 30
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.52 E-value=89 Score=23.07 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 58 NMEELMRLEKSLEGGLSRVVQTKG--ERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 58 s~~eL~~LE~qLe~al~~IR~rK~--~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
...|+..|+..++..-...-.... .-+..|.+.+.+.-..|-++|..|+.+++
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 445677777766655444433333 34456777777777888899999988875
No 31
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.48 E-value=78 Score=22.09 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033742 85 LNEIDALRRKEAQLTEENLRLKQ 107 (112)
Q Consensus 85 ~~~i~~lk~ke~~l~een~~L~~ 107 (112)
..+...|..++..|+.+|+.|..
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~ 110 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLEL 110 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666553
No 32
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=51.70 E-value=71 Score=21.38 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=40.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhcchh----cCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 25 LQLESSTYAILSKEMADRTRELRQMKG----EELQELNMEELMRLEKSLEGGLSRVVQTKG 81 (112)
Q Consensus 25 ~~~~~~e~~~l~~~~~~L~~~~R~l~G----edL~~Ls~~eL~~LE~qLe~al~~IR~rK~ 81 (112)
++.+.+++.+|+-+|..|.+.+++=.| .+=..|+..+=+-+=...-.+|...=++|.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI 65 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999998 677778988877776666666666544443
No 33
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=50.89 E-value=1.2e+02 Score=23.74 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhcch-----hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 32 YAILSKEMADRTRELRQMK-----GEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106 (112)
Q Consensus 32 ~~~l~~~~~~L~~~~R~l~-----GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~ 106 (112)
++.|+.....+++..+-+. +.|....+..+= ..|..-|...|.+-. -+..++..|+++...+..+++.|+
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~----~~La~lL~~sre~Nk-~L~~Ev~~Lrqkl~E~qGD~KlLR 106 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKEN----KNLAQLLSESREQNK-KLKEEVEELRQKLNEAQGDIKLLR 106 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccch----hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHH
Confidence 3445555556666555544 222222222222 233344455555433 456789999999999999999999
Q ss_pred Hhhh
Q 033742 107 QHFI 110 (112)
Q Consensus 107 ~~~~ 110 (112)
.+++
T Consensus 107 ~~la 110 (319)
T PF09789_consen 107 EKLA 110 (319)
T ss_pred HHHH
Confidence 9875
No 34
>PHA03162 hypothetical protein; Provisional
Probab=50.86 E-value=78 Score=21.63 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhcchhcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 25 LQLESSTYAILSKEMADRTRELRQMKGEE----LQELNMEELMRLEKSLEGGLSRVVQTKGE 82 (112)
Q Consensus 25 ~~~~~~e~~~l~~~~~~L~~~~R~l~Ged----L~~Ls~~eL~~LE~qLe~al~~IR~rK~~ 82 (112)
++.+..++.+|+-+|..|.+.+++=.|.+ =..|+..+=+-+=...-.+|...=++|.+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998877776 23478877776666666666665554443
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.48 E-value=55 Score=19.79 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 80 KGERLLNEIDALRRKEAQLTEENLRLKQ 107 (112)
Q Consensus 80 K~~ll~~~i~~lk~ke~~l~een~~L~~ 107 (112)
|.+-..+.|..|+.++..|.++|..|..
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~ 39 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKE 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4445555666666666666666665554
No 36
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.94 E-value=27 Score=27.09 Aligned_cols=50 Identities=34% Similarity=0.381 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 033742 60 EELMRLEKSLEGGLSRVV------QTKGERLL-------------------------------NEIDALRRKEAQLTEEN 102 (112)
Q Consensus 60 ~eL~~LE~qLe~al~~IR------~rK~~ll~-------------------------------~~i~~lk~ke~~l~een 102 (112)
.....||.+|..+...|. +.|+.++. -+++.|++|.+.|+++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 556668888888877776 44555432 12478999999999999
Q ss_pred HHHHHhh
Q 033742 103 LRLKQHF 109 (112)
Q Consensus 103 ~~L~~~~ 109 (112)
..|+...
T Consensus 177 ~~LR~Ea 183 (306)
T PF04849_consen 177 EQLRSEA 183 (306)
T ss_pred HHHHHHH
Confidence 9999864
No 37
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=46.95 E-value=91 Score=22.22 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHH
Q 033742 57 LNMEELMRLEKSLEG 71 (112)
Q Consensus 57 Ls~~eL~~LE~qLe~ 71 (112)
+|-++|+.|+..|+.
T Consensus 109 ~s~~~iq~l~k~le~ 123 (172)
T KOG3366|consen 109 LSKKRIQELEKELEK 123 (172)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666654
No 38
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.70 E-value=1e+02 Score=21.89 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 33 AILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQL 98 (112)
Q Consensus 33 ~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l 98 (112)
..+..++..|+.....+... +.+|..--..++.....-+....+...++|+.|++....|
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~------~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQ------VQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444321 2333333333333333334444444555565555544433
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.04 E-value=1.1e+02 Score=22.14 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 30 STYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV--QTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (112)
Q Consensus 30 ~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR--~rK~~ll~~~i~~lk~ke~~l~een~~L~~ 107 (112)
.-+..+..++..++..+..+.++ .-.....+.+.+..+-..|- ...++-+.+++..++.+...+..+|..+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT-----WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554433 11333444444444333333 333445567777777777777777777665
Q ss_pred h
Q 033742 108 H 108 (112)
Q Consensus 108 ~ 108 (112)
.
T Consensus 168 ~ 168 (206)
T PRK10884 168 T 168 (206)
T ss_pred H
Confidence 4
No 40
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.75 E-value=99 Score=25.53 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 63 MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 63 ~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
..||++|+.- |. =.++|..+...++.|...+..+|..|..+++
T Consensus 79 sELEKqLaaL----rq-Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEI----RR-ELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHH----HH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544 21 1235556777788888889999999888764
No 41
>PRK11637 AmiB activator; Provisional
Probab=45.06 E-value=1.6e+02 Score=23.44 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 033742 28 ESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQLTEENLRL 105 (112)
Q Consensus 28 ~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~--ll~~~i~~lk~ke~~l~een~~L 105 (112)
...++..+.+++..++...+. ...+|..|+.+|...-..|.....+ .+..+|..++.....+...-...
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~---------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRAS---------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455544444444 2345777777777777777655444 33456666665555555544444
Q ss_pred HH
Q 033742 106 KQ 107 (112)
Q Consensus 106 ~~ 107 (112)
..
T Consensus 123 ~~ 124 (428)
T PRK11637 123 ER 124 (428)
T ss_pred HH
Confidence 33
No 42
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=44.05 E-value=34 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033742 60 EELMRLEKSLEGGLSRVVQTKG 81 (112)
Q Consensus 60 ~eL~~LE~qLe~al~~IR~rK~ 81 (112)
.+|.++|++-+.+|..|+.+=.
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~ 49 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDN 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999987643
No 43
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=43.55 E-value=56 Score=18.45 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=14.9
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHHHHH
Q 033742 54 LQELNMEELMR----LEKSLEGGLSRVVQ 78 (112)
Q Consensus 54 L~~Ls~~eL~~----LE~qLe~al~~IR~ 78 (112)
|..+|++||++ |...+|.-+..+|.
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~ 33 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQ 33 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55678888764 55555555555554
No 44
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=42.41 E-value=89 Score=19.86 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033742 76 VVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFIW 111 (112)
Q Consensus 76 IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~~ 111 (112)
|++.=......+++.|..+...+..+|..|..+|..
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455667788999999999999999888754
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.20 E-value=1.6e+02 Score=22.66 Aligned_cols=58 Identities=26% Similarity=0.333 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 52 edL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll--~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
.+++.++..+|..+-..|...-..|.++|..+- ..++..+..+...+.++-..+...|
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448889999999999999888888887777653 3466666666666666555555544
No 46
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=41.31 E-value=72 Score=18.52 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcc
Q 033742 27 LESSTYAILSKEMADRTRELRQM 49 (112)
Q Consensus 27 ~~~~e~~~l~~~~~~L~~~~R~l 49 (112)
....+...|++++..|+..+.++
T Consensus 37 ~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788999999988877665
No 47
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=40.95 E-value=2.3e+02 Score=24.24 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcchhcCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 27 LESSTYAILSKEMADRTRELRQMKGEELQE----------LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKE 95 (112)
Q Consensus 27 ~~~~e~~~l~~~~~~L~~~~R~l~GedL~~----------Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke 95 (112)
.-...++.|+.+++.|...++.+.+.+-.+ ....|+..|+.+++.+=.+.+.-|. ++...+...+.-+
T Consensus 563 ~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLke-vf~~ks~eFr~av 640 (722)
T PF05557_consen 563 IKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKE-VFKAKSQEFREAV 640 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345788999999999999888776543222 2244677888888876655444333 5555555555443
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.54 E-value=1.4e+02 Score=21.65 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 033742 28 ESSTYAILSKEMA 40 (112)
Q Consensus 28 ~~~e~~~l~~~~~ 40 (112)
.+.+++.++.+..
T Consensus 98 le~el~~l~~~l~ 110 (206)
T PRK10884 98 LENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 49
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.53 E-value=78 Score=22.37 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 033742 62 LMRLEKSLEGGLSRVVQTKGERLLNEI---DALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 62 L~~LE~qLe~al~~IR~rK~~ll~~~i---~~lk~ke~~l~een~~L~~~ 108 (112)
|..+|..+..|+.+- =+|..+| +.|+..++.|.+|-..|+..
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888761 2333344 33444444455554444443
No 50
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.10 E-value=78 Score=24.72 Aligned_cols=43 Identities=35% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 54 LQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (112)
Q Consensus 54 L~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L 105 (112)
-++||..|-..| -+||.||.+++ +.|+.|+..+....++-..|
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 345777765554 57999998774 78999998888777765544
No 51
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.92 E-value=77 Score=18.45 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 85 LNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 85 ~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
..++..++++...+..+|..|..+++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655543
No 52
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=39.64 E-value=54 Score=25.12 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=34.8
Q ss_pred HHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 41 DRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (112)
Q Consensus 41 ~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~l 83 (112)
.+++..++..-|.|.+|+++||.+|=..|-..+..|-.-=+..
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~ 245 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQ 245 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999999999988888877654444
No 53
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.30 E-value=1e+02 Score=19.46 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=40.4
Q ss_pred hHHHHHHhhhhhhccccCCchHHHHHhHHHHHHHHHHHHHHH--HHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 033742 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRT--RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQT 79 (112)
Q Consensus 2 ~~ileRY~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~L~--~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~r 79 (112)
..++..|+..-.........-..+.....|......++..+. ...-.+.|+=+-..+.++ +...+-.+
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~e----------a~~~Le~~ 71 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEE----------ARTELKER 71 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHH----------HHHHHHHH
Confidence 355666766543321111101112223334444444444442 223345666444444443 34443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 80 KGERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 80 K~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
+. .+...|..+.++...+..+-..+..++
T Consensus 72 ~e-~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 72 LE-TIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 234444445554444444444444443
No 54
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=38.27 E-value=97 Score=23.34 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033742 84 LLNEIDALRRKEAQLTEENLRLK 106 (112)
Q Consensus 84 l~~~i~~lk~ke~~l~een~~L~ 106 (112)
|..+-+.|+.++..|..++..|+
T Consensus 227 leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.97 E-value=1.5e+02 Score=20.80 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 60 EELMRLEKSLEGGLSRVVQ----------TKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 60 ~eL~~LE~qLe~al~~IR~----------rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.+|..++..++.+-.+..+ .+..-..++|+.++++......+...|+.+.+
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666555432 23345567788888777777777777777653
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.55 E-value=3.2e+02 Score=25.12 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 58 NMEELMRLEKSLEGGLSRVVQTKGER--LLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 58 s~~eL~~LE~qLe~al~~IR~rK~~l--l~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
-.+||.-|=++.+.+=..-+.|=+.. +.+++++|++-.+.|.++-..|..++
T Consensus 234 yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQL 287 (1195)
T KOG4643|consen 234 YRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQL 287 (1195)
T ss_pred hhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34566666666666655555555554 44566666666666666655555544
No 57
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=33.43 E-value=97 Score=18.45 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 59 MEELMRLEKSLEGGLSRVVQTKGER 83 (112)
Q Consensus 59 ~~eL~~LE~qLe~al~~IR~rK~~l 83 (112)
-.|+..+|+.|..+..-+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999988764
No 58
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=33.24 E-value=2.9e+02 Score=23.13 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHH
Q 033742 52 EELQELNMEELMRLEKSLEGGLSRVV---QTKGERL---LNEIDALRRKEAQLTEEN 102 (112)
Q Consensus 52 edL~~Ls~~eL~~LE~qLe~al~~IR---~rK~~ll---~~~i~~lk~ke~~l~een 102 (112)
=|++.||-+||+ +|++.|+..+- .-|.|+. ..||..|..=+..++.++
T Consensus 197 l~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 197 LDIDKLSTEELR---RQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred CCcccccHHHHH---HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 458899988875 69999999875 4455543 346666666666666665
No 59
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.12 E-value=1.4e+02 Score=19.56 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 68 SLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 68 qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
..+.+...|..|+. .+...|..+.++...+.+.-..+..++
T Consensus 68 d~~e~~~~l~~r~E-~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 68 DKTKVEKELKERKE-LLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444 455677777777766666665555544
No 60
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=32.11 E-value=92 Score=25.64 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 033742 56 ELNMEELMRLEKSLEGGLSRVVQ 78 (112)
Q Consensus 56 ~Ls~~eL~~LE~qLe~al~~IR~ 78 (112)
+.++.+..-|=+-=|.+|++||.
T Consensus 233 G~slPs~lPLTKaEEriLKrvRR 255 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRR 255 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHH
Confidence 56777777777777888888873
No 61
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.61 E-value=67 Score=15.25 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 033742 31 TYAILSKEMADRTRE 45 (112)
Q Consensus 31 e~~~l~~~~~~L~~~ 45 (112)
|+.+++..|..|++.
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455666666666644
No 62
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=31.57 E-value=1e+02 Score=17.37 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 033742 53 ELQELNMEELMRLEKSLEGGLSRVVQT 79 (112)
Q Consensus 53 dL~~Ls~~eL~~LE~qLe~al~~IR~r 79 (112)
||-.+|.+||...-..+...+-..|-.
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~ 27 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQ 27 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999998888888843
No 63
>PF15058 Speriolin_N: Speriolin N terminus
Probab=31.55 E-value=1.2e+02 Score=22.08 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 80 KGERLLNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 80 K~~ll~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
+++.++.+-++|||.++ |..||..|+.-
T Consensus 13 qierLv~ENeeLKKlVr-LirEN~eLksa 40 (200)
T PF15058_consen 13 QIERLVRENEELKKLVR-LIRENHELKSA 40 (200)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHH
Confidence 44455677888999888 66667777653
No 64
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=30.18 E-value=4.2e+02 Score=24.71 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 033742 26 QLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV 77 (112)
Q Consensus 26 ~~~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR 77 (112)
....+.+..|++++..|+.+.-. |-.+-+...+.|...||++|...=.++=
T Consensus 1127 kK~ia~lnnlqqElklLRnEK~R-mh~~~dkVDFSDIEkLE~qLq~~~~kL~ 1177 (1439)
T PF12252_consen 1127 KKAIANLNNLQQELKLLRNEKIR-MHSGTDKVDFSDIEKLEKQLQVIHTKLY 1177 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHh-hccCCCcccHHHHHHHHHHHHHhhhhhH
Confidence 34457788899999988875443 4445556999999999999987765543
No 65
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=30.16 E-value=73 Score=24.17 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHhhcchh--cCCCCCCHHHHHHHHHHHHHHHHHHH
Q 033742 39 MADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVV 77 (112)
Q Consensus 39 ~~~L~~~~R~l~G--edL~~Ls~~eL~~LE~qLe~al~~IR 77 (112)
-..+-..+|++.. ++=-+||++++..+|.+....|.++|
T Consensus 217 r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 217 RRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3455566777655 56778999999999999999999987
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.82 E-value=2.6e+02 Score=21.58 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhcchh--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 33 AILSKEMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 33 ~~l~~~~~~L~~~~R~l~G--edL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll--~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
..++.....|....+++.- ++++.++.++|..+-..|..-...|...+..+- ..++..+..+.....+.-..+...
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~ 254 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE 254 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444432 567889999999999888888888877776643 345555555555444444444444
Q ss_pred h
Q 033742 109 F 109 (112)
Q Consensus 109 ~ 109 (112)
|
T Consensus 255 I 255 (312)
T smart00787 255 I 255 (312)
T ss_pred H
Confidence 3
No 67
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.81 E-value=1.6e+02 Score=18.96 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 83 RLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 83 ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
+-.++..-|+++...+.++|..|..++.
T Consensus 12 FvEEEa~LlRRkl~ele~eN~~l~~EL~ 39 (96)
T PF11365_consen 12 FVEEEAELLRRKLSELEDENKQLTEELN 39 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999988887653
No 68
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.47 E-value=1.4e+02 Score=18.43 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 85 LNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 85 ~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
.+.|+..+.....|..+|..|..=
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666777766653
No 69
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.24 E-value=1.3e+02 Score=17.89 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 83 RLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 83 ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.+..++..++++...+..+|..|..++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777888887777653
No 70
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=28.97 E-value=38 Score=23.54 Aligned_cols=17 Identities=53% Similarity=0.653 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHH
Q 033742 54 LQELNMEELMRLEKSLE 70 (112)
Q Consensus 54 L~~Ls~~eL~~LE~qLe 70 (112)
|..||.+||.+|+..|+
T Consensus 21 L~~LS~EEL~~L~~el~ 37 (147)
T PF03250_consen 21 LAKLSPEELEELENELE 37 (147)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 56799999999997764
No 71
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=28.40 E-value=76 Score=17.38 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 80 KGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 80 K~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
....+.-.|..+.++...|..+|-.|+..+-
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3445666788888888889999998887753
No 72
>PHA02109 hypothetical protein
Probab=28.13 E-value=1.7e+02 Score=21.15 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcchhcCCCCCC--HHHHHHHHHHHHH
Q 033742 37 KEMADRTRELRQMKGEELQELN--MEELMRLEKSLEG 71 (112)
Q Consensus 37 ~~~~~L~~~~R~l~GedL~~Ls--~~eL~~LE~qLe~ 71 (112)
++|+.++ |...|++|++|+ ++++-.|+-.|+.
T Consensus 171 E~ID~~~---~~~t~~~L~~~~~~L~~I~~L~~ki~~ 204 (233)
T PHA02109 171 ERIDQVE---RSHTGENLEGLTDKLKQISELTIKLEA 204 (233)
T ss_pred HHHHHHH---hccchhhhhhhhHHHHhhHHHHHHHHH
Confidence 3444444 677899999886 5666666665553
No 73
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=27.80 E-value=95 Score=15.83 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRR 93 (112)
Q Consensus 61 eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ 93 (112)
.+..|+..+..|+..-.--+--.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 456777888888777666666666666666654
No 74
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.94 E-value=1.6e+02 Score=18.14 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 81 GERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 81 ~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
...+..++..+++....+.++|..|.-++.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888889999988877653
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.81 E-value=3.1e+02 Score=21.37 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 84 LLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 84 l~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
+..+|-.++++.+.+.-+|..|...+.
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345667778888888888888877653
No 76
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.61 E-value=2.3e+02 Score=19.75 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 28 ESSTYAILSKEMADRTRELRQMKGE--ELQELNMEELMRLEKSLEGGLSRVVQTKG 81 (112)
Q Consensus 28 ~~~e~~~l~~~~~~L~~~~R~l~Ge--dL~~Ls~~eL~~LE~qLe~al~~IR~rK~ 81 (112)
....+..+...+..+.......+++ |+-+++..........++.+...+-....
T Consensus 104 l~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~le 159 (204)
T PF04740_consen 104 LKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLE 159 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777776665 67666666666666666666554443333
No 77
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.79 E-value=62 Score=21.18 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=16.0
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 033742 52 EELQELNMEELMRLEKSLE 70 (112)
Q Consensus 52 edL~~Ls~~eL~~LE~qLe 70 (112)
.-+++||.+|+..|..+++
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 4567899999999998876
No 78
>PF10802 DUF2540: Protein of unknown function (DUF2540); InterPro: IPR024254 This family of proteins with unknown function appears to be restricted to Methanococcus.; PDB: 2EFV_A.
Probab=25.77 E-value=51 Score=20.30 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=10.2
Q ss_pred hHHHHHHhhhhhh
Q 033742 2 KQVIDRHNLHSQN 14 (112)
Q Consensus 2 ~~ileRY~~~~~~ 14 (112)
++|++||.+.++-
T Consensus 52 ~~IieKyGKatnl 64 (75)
T PF10802_consen 52 EKIIEKYGKATNL 64 (75)
T ss_dssp HHHHHHHGGGHHH
T ss_pred HHHHHHHhHHHHH
Confidence 4799999988653
No 79
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.33 E-value=2.5e+02 Score=19.81 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 54 LQELNMEELMRLEKSLEGGLSRVVQTK--GERLLNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 54 L~~Ls~~eL~~LE~qLe~al~~IR~rK--~~ll~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
.+++|+++....=+++.........-+ .+-+..++..|+.+...|..+|..|..++
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899887776666665433222211 12445666777777777777777776543
No 80
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=25.15 E-value=4.5e+02 Score=22.73 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 61 ELMRLEKSLEGGLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 61 eL~~LE~qLe~al~~IR~rK~~ll---~~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
.|..|+++-+.=+...+.+...+= .++++.|+.-...|++|.+.|.-..
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~ 56 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNEL 56 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777666666533 4688899999999999998886543
No 81
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.09 E-value=2.7e+02 Score=20.10 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhcchhc--CCCC-CCHHHHHHHHHHHHHHHHHH
Q 033742 25 LQLESSTYAILSKEMADRTRELRQMKGE--ELQE-LNMEELMRLEKSLEGGLSRV 76 (112)
Q Consensus 25 ~~~~~~e~~~l~~~~~~L~~~~R~l~Ge--dL~~-Ls~~eL~~LE~qLe~al~~I 76 (112)
.+.+..++..|......|+.+.|.+-.| .|++ ||+++++.=-+.|..-+..-
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~ 135 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGY 135 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665544 3333 66666666555555444433
No 82
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=24.84 E-value=1.5e+02 Score=23.20 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 65 LEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 65 LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
|-++=|.|-.. |.+|.+. |..|..++..|++.|+.|-..+.
T Consensus 296 LmKNREAAREC-RRKKKEY----VKCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 296 LMKNREAAREC-RRKKKEY----VKCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred HHhhHHHHHHH-HHhHhHH----HHHHHhHHHHHhcccHHHHHHHH
Confidence 33444544444 6666654 57777888888888877766553
No 83
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.41 E-value=1.4e+02 Score=16.43 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 033742 89 DALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 89 ~~lk~ke~~l~een~~L~~~~~ 110 (112)
+-|++=-..|.++|..|...+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~ 29 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQ 29 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888888764
No 84
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=23.95 E-value=2.8e+02 Score=19.89 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 033742 88 IDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 88 i~~lk~ke~~l~een~~L~~~~~ 110 (112)
+..++.....+.++...|..+|.
T Consensus 166 ~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 166 HKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666553
No 85
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.33 E-value=1.9e+02 Score=17.69 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHH----HHHHHHHHHHH
Q 033742 27 LESSTYAILSKEMADRTRELRQMKGEELQELNME----ELMRLEKSLEG 71 (112)
Q Consensus 27 ~~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~----eL~~LE~qLe~ 71 (112)
........++..+...+...+.+-| -+-|++ ++..||.++..
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHH
Confidence 3446678899999999999988887 334554 56666666544
No 86
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=23.10 E-value=3.8e+02 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033742 54 LQELNMEELMRLEKSLEGGLSRVVQTK 80 (112)
Q Consensus 54 L~~Ls~~eL~~LE~qLe~al~~IR~rK 80 (112)
|..+|..==.-+..++++||..|..-|
T Consensus 3 Lk~lS~~GekyvdeEik~Al~GvKqMK 29 (436)
T PF01093_consen 3 LKELSEQGEKYVDEEIKNALNGVKQMK 29 (436)
T ss_pred hHHHhHhCchhHHHHHHHHHHHHHHHH
Confidence 334444444556677777777776444
No 87
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.92 E-value=1.5e+02 Score=17.33 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=19.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 033742 52 EELQELNMEELMRLEKSLEGGLSRVVQT 79 (112)
Q Consensus 52 edL~~Ls~~eL~~LE~qLe~al~~IR~r 79 (112)
.|+-.+|.+||...-..+..-|-..|..
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL~~lR~~ 31 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKELFNLRFQ 31 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777776643
No 88
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=22.86 E-value=3.7e+02 Score=20.97 Aligned_cols=76 Identities=26% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhcchhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 033742 33 AILSKEMADRTRELRQMKGE-ELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEI-DALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 33 ~~l~~~~~~L~~~~R~l~Ge-dL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i-~~lk~ke~~l~een~~L~~~~ 109 (112)
..|+..+..|+...+.+--+ +....-.+-|..-=..|-.+--++ ..|.+.--+.| +.|=+|...|..+...|...+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~-~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~ 100 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRI-QAKAEQEEEFISNTLLKKLQQLKKEKETLALKY 100 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777765554321 011111122222222222221111 12222222322 355566666777666665554
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.67 E-value=3.6e+02 Score=20.73 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 033742 30 STYAILSKEMADRT 43 (112)
Q Consensus 30 ~e~~~l~~~~~~L~ 43 (112)
.++..+..+...+.
T Consensus 50 ~el~~le~Ee~~l~ 63 (314)
T PF04111_consen 50 EELEKLEQEEEELL 63 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 90
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=22.62 E-value=3e+02 Score=19.75 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 24 QLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDAL 91 (112)
Q Consensus 24 ~~~~~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~l 91 (112)
.+.+...++..|.-+|+.|+.....-.-.++ -.++.+|+-.|..-++.=-.++++++.+-+..|
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~~~----n~~i~slk~EL~d~iKe~e~~emeLyyecMkkL 169 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKKDL----NEEIESLKSELNDLIKEREIREMELYYECMKKL 169 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777765443221111 135888888888877775667777777666555
No 91
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.56 E-value=2.1e+02 Score=18.09 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 56 ~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
++|++|...+=.....+-..+.. -..++.+++..+..+...+...-..|..+++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888887754332221111111 2346667777777777777766666666554
No 92
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.00 E-value=3e+02 Score=22.01 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQL 98 (112)
Q Consensus 52 edL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~ke~~l 98 (112)
-+|++.|++|+-.|-+. +.-+..+++.|+.++..|
T Consensus 24 ~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 24 HELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL 58 (420)
T ss_pred ccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH
Confidence 46778888888776432 123445667777777766
No 93
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=21.90 E-value=3e+02 Score=19.53 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=5.8
Q ss_pred CCCCCHHHH
Q 033742 54 LQELNMEEL 62 (112)
Q Consensus 54 L~~Ls~~eL 62 (112)
..++++++.
T Consensus 100 ~~~it~~~v 108 (170)
T PRK13923 100 ISDLTLEDV 108 (170)
T ss_pred cccCCHHHH
Confidence 455777776
No 94
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=21.77 E-value=94 Score=17.70 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 53 ELQELNMEELMRLEKSLEGGLSRVVQTKG 81 (112)
Q Consensus 53 dL~~Ls~~eL~~LE~qLe~al~~IR~rK~ 81 (112)
||-.+|.+||...-..+...+-..|..+.
T Consensus 3 elr~ls~~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 3 ELRELSDEELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHCHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777765443
No 95
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.33 E-value=2.2e+02 Score=21.31 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033742 86 NEIDALRRKEAQLTEENLRLKQHFIW 111 (112)
Q Consensus 86 ~~i~~lk~ke~~l~een~~L~~~~~~ 111 (112)
+++..|+..+..|..+|-.|..|+.+
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777788888888887654
No 96
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.27 E-value=4.8e+02 Score=21.68 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcch--hcCCCCCCHH-HHHHHHHHHHHHHHHHHH
Q 033742 35 LSKEMADRTRELRQMK--GEELQELNME-ELMRLEKSLEGGLSRVVQ 78 (112)
Q Consensus 35 l~~~~~~L~~~~R~l~--GedL~~Ls~~-eL~~LE~qLe~al~~IR~ 78 (112)
+-.+++.|+...|.|. |=.++.++++ ++..|..++..++..|-.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~ 274 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEE 274 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888899988 4468888865 899999999997777663
No 97
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=21.19 E-value=4.3e+02 Score=21.08 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=50.7
Q ss_pred hHHHHHHhhhhhhccccCCchHHHHHhHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKG 81 (112)
Q Consensus 2 ~~ileRY~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~ 81 (112)
..+.+||.........+... ....++..+.++...|+...- .+.+..++..+++.+-.-+...++
T Consensus 10 ~~~~~r~~el~~~L~~p~v~-----~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~~~D 74 (363)
T COG0216 10 ESLLERYEELEALLSDPEVI-----SDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAEEKD 74 (363)
T ss_pred HHHHHHHHHHHHHhcCcccc-----cCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCC
Confidence 56788888776554443221 112334445555444443221 345666777777666555553333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 82 ----ERLLNEIDALRRKEAQLTEENLRL 105 (112)
Q Consensus 82 ----~ll~~~i~~lk~ke~~l~een~~L 105 (112)
.+..++|..++.+...|.++-+.|
T Consensus 75 ~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 75 PEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567888888887777776655
No 98
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.67 E-value=3.6e+02 Score=20.49 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 033742 53 ELQELNMEELMRLEKSL--EGGLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQH 108 (112)
Q Consensus 53 dL~~Ls~~eL~~LE~qL--e~al~~IR~rK~~ll---~~~i~~lk~ke~~l~een~~L~~~ 108 (112)
-|+.||.+|=.+ =+.| ..|.-.-|.||...| ..+|..|-.....|..+|..|+.+
T Consensus 60 RL~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 60 RLDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred hhcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676665332 1222 224445577776654 235666666656666666665543
Done!