Query 033742
Match_columns 112
No_of_seqs 118 out of 1114
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 09:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033742.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033742hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 43.3 8.9 0.00065 20.0 2.5 33 62-94 19-51 (56)
2 d1t27a_ d.129.3.4 (A:) Phoshat 31.3 24 0.0017 24.1 3.8 41 38-78 217-259 (269)
3 d3d19a2 a.29.13.1 (A:145-274) 29.5 52 0.0038 19.5 9.3 61 28-88 36-96 (130)
4 d1r8ea1 a.6.1.3 (A:3-120) Tran 25.9 54 0.004 18.4 6.3 24 83-106 88-111 (118)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 24.8 57 0.0042 18.3 8.0 39 71-110 65-103 (107)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 24.6 44 0.0032 16.9 4.3 24 86-109 33-56 (61)
7 d2oa5a1 d.362.1.1 (A:7-102) Un 24.4 61 0.0044 18.5 7.3 56 25-80 4-61 (96)
8 d1siga_ a.177.1.1 (A:) Sigma70 22.7 90 0.0065 20.5 5.6 57 31-89 217-273 (334)
9 d1x4ta1 a.2.15.1 (A:7-86) Pre- 22.5 61 0.0045 17.8 5.5 33 23-55 46-78 (80)
10 d2zjrv1 a.2.2.1 (V:1-66) Ribos 21.6 56 0.004 17.0 3.9 29 52-80 4-32 (66)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=43.31 E-value=8.9 Score=20.00 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (112)
Q Consensus 62 L~~LE~qLe~al~~IR~rK~~ll~~~i~~lk~k 94 (112)
+..||.++..|.....--+--.+-++|..|++.
T Consensus 19 i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 19 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 677888888888777666666667777777654
No 2
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.34 E-value=24 Score=24.07 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcchh--cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033742 38 EMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQ 78 (112)
Q Consensus 38 ~~~~L~~~~R~l~G--edL~~Ls~~eL~~LE~qLe~al~~IR~ 78 (112)
.-..+-..+|+... ++=-+||++|+..+|.+....|.++|.
T Consensus 217 ~r~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 217 EKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33455566777665 566789999999999999999998875
No 3
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=29.51 E-value=52 Score=19.46 Aligned_cols=61 Identities=8% Similarity=-0.086 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 28 ESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEI 88 (112)
Q Consensus 28 ~~~e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i 88 (112)
+..+.....+..+.|-..-+.+.|--..+.++..+..+-++...++..+|.-|.+++...+
T Consensus 36 li~~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l 96 (130)
T d3d19a2 36 LVDTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIE 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888778888888888889999999999999999999999988765443
No 4
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=25.86 E-value=54 Score=18.44 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 83 RLLNEIDALRRKEAQLTEENLRLK 106 (112)
Q Consensus 83 ll~~~i~~lk~ke~~l~een~~L~ 106 (112)
.+.++++.++.....+..-...+.
T Consensus 88 ~l~~~i~~l~~~~~~l~~~~~~l~ 111 (118)
T d1r8ea1 88 QIREKLDFLSALEQTISLVKKRMK 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444444443333333
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.75 E-value=57 Score=18.30 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033742 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQHFI 110 (112)
Q Consensus 71 ~al~~IR~rK~~ll~~~i~~lk~ke~~l~een~~L~~~~~ 110 (112)
.+...+-.++ ..+...|..+.+....+..+-..+..++.
T Consensus 65 e~~~~l~~~~-e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 65 ELTEELQEKL-ETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333 35566777787777777777777776653
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.59 E-value=44 Score=16.95 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 033742 86 NEIDALRRKEAQLTEENLRLKQHF 109 (112)
Q Consensus 86 ~~i~~lk~ke~~l~een~~L~~~~ 109 (112)
+-|..|++++..|.+++..|+...
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888887654
No 7
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=24.35 E-value=61 Score=18.48 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhcc--hhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033742 25 LQLESSTYAILSKEMADRTRELRQM--KGEELQELNMEELMRLEKSLEGGLSRVVQTK 80 (112)
Q Consensus 25 ~~~~~~e~~~l~~~~~~L~~~~R~l--~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK 80 (112)
++.+.+++.+|+-++..|.+.+|+= .+.+=..|+..+=+-+=.+.-.+|...=++|
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts~A~kK 61 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999883 3455567898876666655555555544433
No 8
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=22.72 E-value=90 Score=20.50 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhcchhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033742 31 TYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEID 89 (112)
Q Consensus 31 e~~~l~~~~~~L~~~~R~l~GedL~~Ls~~eL~~LE~qLe~al~~IR~rK~~ll~~~i~ 89 (112)
.+......+...+..++.+ ++-.++++.++..+-..+..|-...+.-|.+++...+.
T Consensus 217 ~l~~~~~~I~~~q~kl~~i--e~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~~~~ 273 (334)
T d1siga_ 217 KLHDVSEEVHRALQKLQQI--EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 273 (334)
T ss_dssp HGGGTHHHHHHHHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHhHHH
Confidence 3334444455444444443 33346999999999999999999999999998765443
No 9
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.54 E-value=61 Score=17.85 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhcchhcCCC
Q 033742 23 LQLQLESSTYAILSKEMADRTRELRQMKGEELQ 55 (112)
Q Consensus 23 ~~~~~~~~e~~~l~~~~~~L~~~~R~l~GedL~ 55 (112)
...-..+.++.+|-.+-...+..++.|.|.|-.
T Consensus 46 ~~IRdLNDeINkL~reK~~WE~rI~eLGGpdY~ 78 (80)
T d1x4ta1 46 FRIRDLNDEINKLLREKGHWEVRIKELGGPDYG 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 334567888999999999999999999888753
No 10
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.56 E-value=56 Score=17.00 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=24.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033742 52 EELQELNMEELMRLEKSLEGGLSRVVQTK 80 (112)
Q Consensus 52 edL~~Ls~~eL~~LE~qLe~al~~IR~rK 80 (112)
.||-.+|.+||...-..+...+-..|-.+
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~ 32 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999988888888544
Done!