BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033744
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OGH|A Chain A, Solution Structure Of Yeast Eif1
          Length = 108

 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 11  SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNG 70
           S+DPFAD  D        Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK LKK+F CNG
Sbjct: 8   SFDPFADTGDD-ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNG 66

Query: 71  NVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
           N+V D  +G++IQLQGD R  V  F++    + K  IKIHGF
Sbjct: 67  NIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108


>pdb|2IF1|A Chain A, Human Translation Initiation Factor Eif1, Nmr, 29
           Structures
          Length = 126

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 74/105 (70%), Gaps = 3/105 (2%)

Query: 11  SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
           S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F 
Sbjct: 22  SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 81

Query: 68  CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
           CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct: 82  CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126


>pdb|2XZM|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 1
 pdb|2XZN|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 2
          Length = 101

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 11/111 (9%)

Query: 1   MVDIDSQIPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILK 60
           M D D Q   + D F           + ++H+RV+QR G+KC TTV+G+  +F Y+KI+K
Sbjct: 1   MNDNDFQFENNIDDF-----------QTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMK 49

Query: 61  DLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHG 111
             KK   CN  +V +    KVI+L GDHR  +  FL +  I   D I IHG
Sbjct: 50  YWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVDNITIHG 100


>pdb|1NNV|A Chain A, The Solution Structure Of Hi1450
          Length = 110

 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2  VDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFG 54
          +D D+ I  +YD F ++  ++L P D    +L+ ++R G + + T    +E+ G
Sbjct: 11 LDPDTAIDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVETADDWEEEIG 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.142    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,568,142
Number of Sequences: 62578
Number of extensions: 137401
Number of successful extensions: 286
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 13
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)