BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033744
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana
GN=At4g27130 PE=3 SV=2
Length = 113
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 93/114 (81%), Gaps = 3/114 (2%)
Query: 1 MVDIDSQIPTSYDPFADI--KDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKI 58
M ++DSQ+PT++DPFAD +DS A G K YVH+RVQQRNG+K LTTVQGLK+++ Y KI
Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGA-GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKI 59
Query: 59 LKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
LKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ +V KD IKIHGF
Sbjct: 60 LKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3
SV=1
Length = 113
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 93/114 (81%), Gaps = 3/114 (2%)
Query: 1 MVDIDSQIPTSYDPFADI--KDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKI 58
M ++DSQ+PT++DPFAD +DS A G K YVH+RVQQRNG+K LTTVQGLK+++ Y KI
Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGA-GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKI 59
Query: 59 LKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
LKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ +V KD I+IHGF
Sbjct: 60 LKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113
>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana
GN=At1g54290 PE=3 SV=1
Length = 113
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 92/114 (80%), Gaps = 3/114 (2%)
Query: 1 MVDIDSQIPTSYDPFADI--KDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKI 58
M D++ Q+PT++DPFAD +DS A G K YVH+RVQQRNG+K LTTVQGLK+++ Y KI
Sbjct: 1 MSDLEVQVPTAFDPFADANAEDSGA-GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKI 59
Query: 59 LKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
LKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ +V KD IKIHGF
Sbjct: 60 LKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3
SV=1
Length = 115
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 89/115 (77%), Gaps = 3/115 (2%)
Query: 1 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQK 57
M D+D QIPT++DPFA+ A G K YVH+R+QQRNG+K LTTVQGLK++F Y K
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSK 60
Query: 58 ILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
ILKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ IV K+ IKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
japonica GN=GOS2 PE=3 SV=1
Length = 115
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 89/115 (77%), Gaps = 3/115 (2%)
Query: 1 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQK 57
M D+D QIPT++DPFA+ A G K YVH+R+QQRNG+K LTTVQGLK++F Y K
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
Query: 58 ILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
ILKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ IV K+ IKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
indica GN=GOS2 PE=2 SV=1
Length = 115
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 89/115 (77%), Gaps = 3/115 (2%)
Query: 1 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQK 57
M D+D QIPT++DPFA+ A G K YVH+R+QQRNG+K LTTVQGLK++F Y K
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
Query: 58 ILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
ILKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ IV K+ IKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa
PE=3 SV=1
Length = 113
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Query: 1 MVDIDSQIPTSYDPFADIKDSLAPGD-KGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKIL 59
MVD D QIPTS+DPFA+ + + A G K YVH+R+QQRNG+K LTTVQGLK++ Y KIL
Sbjct: 1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKIL 60
Query: 60 KDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
KDLKK CCNG VVNDK LGKVIQLQGD RKNV F+V++ IV KD+IK+H F
Sbjct: 61 KDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113
>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog OS=Sporobolus stapfianus
PE=3 SV=1
Length = 115
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 91/115 (79%), Gaps = 3/115 (2%)
Query: 1 MVDIDSQIPTSYDPF--ADIKDS-LAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQK 57
M D+D QIPT++DPF A+ DS A G K YVH+R+QQRNG+K LTTVQGLK++F Y K
Sbjct: 1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
Query: 58 ILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
ILKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ IV K+ IKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1
Length = 113
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 91/114 (79%), Gaps = 3/114 (2%)
Query: 1 MVDIDSQIPTSYDPFADI--KDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKI 58
M + D+ IPT++DPFA+ +DS A G K YVH+RVQQRNG+K LTTVQGLK+D+ Y KI
Sbjct: 1 MSEFDNAIPTAFDPFAEANAEDSGA-GTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKI 59
Query: 59 LKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
LKDLKKEFCCNG VV D LG+VIQLQGD RKNV FLV++ IV K+ IKIHGF
Sbjct: 60 LKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113
>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A
PE=3 SV=1
Length = 108
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 11 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNG 70
S+DPFAD D A Y+H+R+QQRNG+K LTTVQG+ E++ ++ILK L+K+F CNG
Sbjct: 8 SFDPFADTGDDEASS-SNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNG 66
Query: 71 NVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
N+V D +G++IQLQGD R V FL+ + K IKIHGF
Sbjct: 67 NMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108
>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1
SV=1
Length = 108
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 11 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNG 70
S+DPFAD D Y+H+R+QQRNG+K LTTVQG+ E++ ++ILK LKK+F CNG
Sbjct: 8 SFDPFADTGDD-ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNG 66
Query: 71 NVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
N+V D +G++IQLQGD R V F++ + K IKIHGF
Sbjct: 67 NIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108
>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae
GN=AGAP006459 PE=3 SV=1
Length = 110
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 11 SYDPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCN 69
++DPFAD IK + G VH+R+QQRNG+K LTTVQGL ++ +KI++ KKEF CN
Sbjct: 8 TFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACN 67
Query: 70 GNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
G V+ G+V+QLQGD R+N+ +L KS + +++K+HGF
Sbjct: 68 GTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 11 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNG 70
+ DPFAD D A +H+R+QQRNG+K LTTVQGL +F ++IL+ LKK+F CNG
Sbjct: 9 TVDPFADTGDDDAQ-PLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNG 67
Query: 71 NVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
+V D LG+VIQLQGD R VM FL + + K IKIHGF
Sbjct: 68 TIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109
>sp|P61220|EIF1B_PIG Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B
PE=3 SV=1
Length = 113
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FL++ IV ++++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|Q9CXU9|EIF1B_MOUSE Eukaryotic translation initiation factor 1b OS=Mus musculus
GN=Eif1b PE=2 SV=2
Length = 113
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FL++ IV ++++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|Q4R4X9|EIF1B_MACFA Eukaryotic translation initiation factor 1b OS=Macaca fascicularis
GN=EIF1B PE=3 SV=1
Length = 113
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FL++ IV ++++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1b OS=Homo sapiens
GN=EIF1B PE=1 SV=2
Length = 113
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FL++ IV ++++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1
PE=3 SV=1
Length = 113
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FLV+ + D++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1
PE=1 SV=1
Length = 113
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FLV+ + D++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1
PE=3 SV=1
Length = 113
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FLV+ + D++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila melanogaster
GN=CG17737 PE=1 SV=1
Length = 110
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 11 SYDPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCN 69
+ DPFAD IK + G VH+R+QQRNG+K LTTVQGL ++ +KI++ KKEF CN
Sbjct: 8 TRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACN 67
Query: 70 GNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
G V+ G+V+QLQGD R+N+ +L K + D++K+HGF
Sbjct: 68 GTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110
>sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1
PE=2 SV=2
Length = 113
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 11 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFC 67
S+DPFAD D L G + Y+H+R+QQRNG+K LTTVQG+ +D+ +K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 68 CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
CNG V+ G+VIQLQGD RKN+ FL++ + D++K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113
>sp|P51971|EIF1_CHICK Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus
gallus GN=EIF1 PE=3 SV=1
Length = 79
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 58/79 (73%)
Query: 34 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVM 93
+QQRNG+K LTTVQG+ +D+ +K++K KK+F CNG V+ G+VIQLQGD RKN+
Sbjct: 1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNIC 60
Query: 94 IFLVKSKIVDKDRIKIHGF 112
FLV+ + D++K+HGF
Sbjct: 61 QFLVEIGLAKDDQLKVHGF 79
>sp|Q5UQD7|SUI1_MIMIV Protein translation factor SUI1 homolog OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R464 PE=3 SV=1
Length = 106
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 12 YDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGN 71
YDPF D D+ +K +H++ +QR K +T ++ + E + LK LK F C+G+
Sbjct: 7 YDPFNDGLDTEQHFEK--IHIKTKQRTKTKSITIIENIPEKIDLKLFLKKLKYTFHCSGS 64
Query: 72 VV-NDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
+ N K IQL GDHR+ V FL+K+ IV + I +HG+
Sbjct: 65 IQQNYDDDSKFIQLSGDHRELVKNFLIKNSIVKESNIVMHGY 106
>sp|A4YIU6|SUI1_METS5 Protein translation factor SUI1 homolog OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=Msed_2210 PE=3 SV=1
Length = 99
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 29 YVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
++ +++++R K +T ++GL +D +KI +LK + G V N + I++QGDH
Sbjct: 23 FIKIKLEKRRYGKEVTVIEGLGDDADLKKIASELKSKLAAGGTVKNGR-----IEIQGDH 77
Query: 89 RKNVMIFLVK 98
R+ LVK
Sbjct: 78 RERARDLLVK 87
>sp|Q975S0|SUI1_SULTO Protein translation factor SUI1 homolog OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_03500 PE=3 SV=1
Length = 100
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 26 DKGYVHLRVQQRNGKKCLTTVQGLK-EDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQL 84
++ ++ ++V++R K +T ++GL D +KI +LK + G V N K I+L
Sbjct: 20 EEQFIKIKVEKRRYGKEVTIIEGLSGSDVELKKIASELKSKLAAGGTVKNGK-----IEL 74
Query: 85 QGDHRKNVMIFLVK 98
QGDHR+ V L+K
Sbjct: 75 QGDHRERVKELLMK 88
>sp|Q55397|Y546_SYNY3 Uncharacterized protein sll0546 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0546 PE=3 SV=1
Length = 111
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 13 DPFADIKDSLAPGDKGYVHLRVQQ-RNGKK--CLTTVQGLK-EDFGYQKILKDLKKEFCC 68
DP ++ + L P + ++R+Q R+G+K +T V GL+ G Q +LK LK FC
Sbjct: 20 DPLSEEQIDLPPQQQ---NVRIQATRSGRKGKTVTVVSGLQLSAMGQQALLKALK-SFCG 75
Query: 69 NGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98
+G + + +++QGD R+ ++ +L+K
Sbjct: 76 SGGTLKEDC----VEIQGDQREKILAYLLK 101
>sp|Q4JAE7|SUI1_SULAC Protein translation factor SUI1 homolog OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=Saci_0865 PE=3 SV=1
Length = 99
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 26 DKGYVHLRVQQRNGKKCLTTVQGLKED-FGYQKILKDLKKEFCCNGNVVNDKVLGKVIQL 84
++ ++ ++V++R K +T V+G+ D +KI +LK + G V N K I+L
Sbjct: 19 EEQFIKIKVEKRRYGKEVTIVEGISNDETELKKIASELKSKLAAGGTVKNGK-----IEL 73
Query: 85 QGDHRKNVMIFLVK 98
QGDHR V L+K
Sbjct: 74 QGDHRDRVKELLIK 87
>sp|Q97BW9|SUI1_THEVO Protein translation factor SUI1 homolog OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0336 PE=3 SV=1
Length = 100
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 30 VHLRVQQRNGKKCLTTVQGLK---EDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQG 86
V + V +R K +T ++G+ ED +KI K+LKK+ G V G++I+LQG
Sbjct: 26 VKIVVDKRRYGKFVTIIEGIDPKIEDI--EKIAKELKKKVASGGTVKE----GRIIELQG 79
Query: 87 DHRKNVMIFL 96
DHR+ V FL
Sbjct: 80 DHRQEVKKFL 89
>sp|Q8TX33|SUI1_METKA Protein translation factor SUI1 homolog OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0844 PE=3 SV=1
Length = 106
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFG--YQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
+ + +Q K +T ++GL +D G Q++ LK+E C G K++ LQGD
Sbjct: 30 IKIYTEQVRPGKVVTIIEGL-DDAGIDLQELASKLKRECACGGTAKEGKII-----LQGD 83
Query: 88 HRKNVMIFLVKSKIVDKDRIKI 109
HR V FL+K + +D I++
Sbjct: 84 HRNKVREFLIKKEGFSEDAIEV 105
>sp|A4QVI3|DENR_MAGO7 Translation machinery-associated protein 22 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TMA22 PE=3
SV=2
Length = 201
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 27 KGYVHLRVQQRNGKKCLTTVQGLKEDFGYQ--KILKDLKKEFCCNGNVVNDKVLGKVIQL 84
K V ++ +RN +K +T+V GL E FG + K+ KD K+F +V G+ I +
Sbjct: 101 KSVVTVKRIERNKRKYVTSVSGL-ESFGLELKKVAKDFGKKFATGSSVTKVASGGEEIVV 159
Query: 85 QGDHRKNVMIFLV-KSKIVDKDRIKI 109
QGD + F+V K K V +D I++
Sbjct: 160 QGDVSDEIKEFIVEKYKDVPEDNIEL 185
>sp|Q2H5Z7|DENR_CHAGB Translation machinery-associated protein 22 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=TMA22 PE=3 SV=1
Length = 188
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 20 DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQ--KILKDLKKEFCCNGNVVNDKV 77
D LA K V ++ +RN +K +T+V GL E FG + K+ KD K+F +V
Sbjct: 89 DKLA---KSVVTIKRIERNKRKFVTSVTGL-EAFGLELKKVAKDFGKKFATGASVTKVPS 144
Query: 78 LGKVIQLQGDHRKNVMIFLV-KSKIVDKDRIKI 109
G+ I +QGD + FL+ K K + +D I++
Sbjct: 145 GGEEIVVQGDVSGEIEEFLLEKYKDIPEDNIEL 177
>sp|A6SIZ0|DENR_BOTFB Translation machinery-associated protein 22 OS=Botryotinia
fuckeliana (strain B05.10) GN=tma22 PE=3 SV=1
Length = 197
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGYQ--KILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
+ ++ +RN +K +T VQGL E FG + K+ K+ F +V G+ I +QGD
Sbjct: 103 IRIKRVERNKRKYVTEVQGL-EAFGLELKKVAKEFGSRFATGSSVTKVASGGQEITVQGD 161
Query: 88 HRKNVMIFLVK 98
+V FL+K
Sbjct: 162 VSDDVREFLIK 172
>sp|Q9P3T4|DENR_NEUCR Translation machinery-associated protein 22 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=tma-22 PE=3 SV=1
Length = 187
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGYQ--KILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
V ++ +RN +K +T+V GL E FG + K+ KD K+F +V G+ I +QGD
Sbjct: 94 VTIKRIERNKRKYVTSVSGL-EAFGLELKKVAKDFGKKFATGSSVTKVPSGGEEIVVQGD 152
Query: 88 HRKNVMIFLV-KSKIVDKDRIKI 109
+ F++ K K V +D I++
Sbjct: 153 VSGEIEEFILEKYKEVPEDNIEL 175
>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22 OS=Coccidioides immitis
(strain RS) GN=TMA22 PE=3 SV=1
Length = 200
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGY--QKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
V ++ +RN +K +T + GL E G +K+ K+L K+F +V + G+ I +QGD
Sbjct: 106 VQIKRVERNKRKHVTVIAGL-EAHGLDNKKVAKELGKKFATGSSVTKNPAGGEEITVQGD 164
Query: 88 HRKNVMIFLVK--SKIVDKDRIKI 109
++V+ +LV+ K V +D ++I
Sbjct: 165 VCEDVLEWLVEVHGKEVPEDNLEI 188
>sp|Q9YBG9|SUI1_AERPE Protein translation factor SUI1 homolog OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=APE_1629 PE=3 SV=1
Length = 101
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 26 DKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQL 84
++ + +R+++R + +T ++G+ E +F +K+ LK G N + I+L
Sbjct: 21 EEQIIKIRLEKRRFGREVTIIEGINEKEFNLKKLASTLKSRLATGGTAKNGR-----IEL 75
Query: 85 QGDHRKNVMIFLVK 98
QGDHR V LV+
Sbjct: 76 QGDHRHRVKKILVE 89
>sp|Q8U006|SUI1_PYRFU Protein translation factor SUI1 homolog OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1817 PE=3 SV=1
Length = 98
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 41 KCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98
K T ++G+ E +F ++I K LK + C G N + I+LQGDHR + LV+
Sbjct: 34 KIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTAKNGR-----IELQGDHRDRIKKLLVE 87
>sp|P58193|SUI1_PYRHO Protein translation factor SUI1 homolog OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=PH1771.1 PE=3 SV=1
Length = 99
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 8 IPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEF 66
+P +P ++ ++ + + +++ K T ++G+ E +F ++I K LK +
Sbjct: 2 VPRIVNPLDEMLFKEVLKEQQRIKVYIERARYGKVKTIIEGIDEKEFDLEEIAKKLKAKL 61
Query: 67 CCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98
C G N + I+LQGDHR + L +
Sbjct: 62 ACGGTAKNGR-----IELQGDHRDRIKKLLAE 88
>sp|Q6L1B9|SUI1_PICTO Protein translation factor SUI1 homolog OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=PTO0648 PE=3 SV=1
Length = 99
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 15 FADIKDSLAPGDKGY------VHLRVQQRNGKKCLTTVQGLK---EDFGYQKILKDLKKE 65
F I L P + G+ V + V +R K +T ++G+ ED +I K LKK+
Sbjct: 6 FTGIPKELQPWE-GFDRNNEVVKISVDKRRYGKVVTLIEGIDPKVEDI--NEIAKSLKKK 62
Query: 66 FCCNGNVVNDKVLGKVIQLQGDHRKNV 92
G V + GK+I+LQGDHR+
Sbjct: 63 VASGGTVKD----GKIIELQGDHRETA 85
>sp|Q5JDH7|SUI1_PYRKO Protein translation factor SUI1 homolog OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1534 PE=3 SV=1
Length = 98
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 8 IPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEF 66
+P +P ++ ++ + + V++ K T ++G+ E +F + I K LK +
Sbjct: 1 MPRIVNPLDEMLFKEVLKEQQRIRVYVERARYGKLKTIIEGIDEKEFDLEDIAKKLKAKL 60
Query: 67 CCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98
C G N + I+LQGDHR V L +
Sbjct: 61 ACGGTAKNGR-----IELQGDHRDRVKKLLAE 87
>sp|B8GDE2|SUI1_METPE Protein translation factor SUI1 homolog OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=Mpal_1990 PE=3 SV=1
Length = 101
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGL-KEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+++ V +R K +T + GL D Q++ K LK + C G V G I+LQGDH
Sbjct: 28 INVNVNRRRYGKEVTVIDGLDPSDIDLQELTKFLKGKLACGGTVK-----GSSIELQGDH 82
Query: 89 RKNVMIFLVK 98
R V L K
Sbjct: 83 RDRVKELLTK 92
>sp|Q9V1U3|SUI1_PYRAB Protein translation factor SUI1 homolog OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB03340 PE=3 SV=2
Length = 98
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 41 KCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98
K T ++G+ E +F ++I K LK + C G N + I+LQGDHR + L +
Sbjct: 34 KIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTAKNGR-----IELQGDHRDRIKKLLAE 87
>sp|B6YSM1|SUI1_THEON Protein translation factor SUI1 homolog OS=Thermococcus
onnurineus (strain NA1) GN=TON_0074 PE=3 SV=1
Length = 98
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 8 IPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEF 66
+P +P ++ ++ + + +++ K T ++G+ E +F + I K LK +
Sbjct: 1 MPRIVNPLDEMLFKEVLKEQQRIRVYIEKARYGKLKTIIEGIDEKEFDLEDIAKKLKAKL 60
Query: 67 CCNGNVVNDKVLGKVIQLQGDHRKNVMIFLV 97
C G V + I+LQGDHR+ V L
Sbjct: 61 ACGGTVKKGR-----IELQGDHREKVKKLLA 86
>sp|Q9HME3|SUI1_HALSA Protein translation factor SUI1 homolog OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_2584C PE=3 SV=1
Length = 97
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGL-KEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+ +R+ +R K +T ++G +D + DLK +F C G V + + I+LQG+H
Sbjct: 27 IEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTVEDGE-----IELQGNH 81
Query: 89 RKNVMIFL 96
V FL
Sbjct: 82 SGRVEDFL 89
>sp|B0R868|SUI1_HALS3 Protein translation factor SUI1 homolog OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1)
GN=OE_4626R PE=3 SV=1
Length = 97
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGL-KEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+ +R+ +R K +T ++G +D + DLK +F C G V + + I+LQG+H
Sbjct: 27 IEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTVEDGE-----IELQGNH 81
Query: 89 RKNVMIFL 96
V FL
Sbjct: 82 SGRVEDFL 89
>sp|Q5UZP9|SUI1_HALMA Protein translation factor SUI1 homolog OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=sui1 PE=3 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGL-KEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+++R+ +R K +T ++G +D + DLK +F C G V + + I+LQG+H
Sbjct: 27 INIRIDERRYGKEVTIIEGFDPKDVDMDSLSSDLKSKFACGGTVEDGQ-----IELQGNH 81
Query: 89 RKNVMIFL 96
V FL
Sbjct: 82 TGRVEDFL 89
>sp|Q3IU96|SUI1_NATPD Protein translation factor SUI1 homolog OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=NP_0388A PE=3 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGL-KEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+++R+ +R K +T ++G +D + DLK +F C G V + I+LQG+H
Sbjct: 27 INIRIDERRYGKEVTVIEGFDPQDVDLDSLSSDLKSKFACGGTVEDGS-----IELQGNH 81
Query: 89 RKNVMIFL 96
V FL
Sbjct: 82 LGRVEDFL 89
>sp|Q8ZTB0|SUI1_PYRAE Protein translation factor SUI1 homolog OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE3340 PE=3 SV=1
Length = 120
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 26 DKGYVHLRVQQRNGKKCLTTVQGLKED---FGYQKILKDLKKEFCCNGNVVNDKVLGKVI 82
+K V +R++ R G G ED G + + ++LKK G + + I
Sbjct: 33 EKALVRIRLENRRGHYVTIVDFGNSEDAKQLGIKDMARELKKRLAAGGTIRDS-----WI 87
Query: 83 QLQGDHRKNVMIFLVK 98
++QGDHR+ + L++
Sbjct: 88 EIQGDHRQKIKKLLIE 103
>sp|C5A278|SUI1_THEGJ Protein translation factor SUI1 homolog OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1995 PE=3 SV=1
Length = 98
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 8 IPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEF 66
+P +P ++ ++ + + +++ K T ++G+ E +F + I K LK +
Sbjct: 1 MPRIVNPLDEMLFKEVLKEQQRIRVYIERARYGKLKTIIEGIDEKEFDLEDIAKKLKAKL 60
Query: 67 CCNGNVVNDKVLGKVIQLQGDHRKNVMIFLV 97
C G V + I+LQGDHR + L
Sbjct: 61 ACGGTVKKGR-----IELQGDHRDRIKKLLA 86
>sp|A2BIX0|SUI1_HYPBU Protein translation factor SUI1 homolog OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0053 PE=3 SV=1
Length = 103
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+ +++++R + +T ++GL E + +K+ +LK G N + I+LQGDH
Sbjct: 27 IKIKLEKRRYGREVTIIEGLDEREVNLKKLASELKSRLATGGTYKNGR-----IELQGDH 81
Query: 89 RKNVMIFLVK 98
R V LV+
Sbjct: 82 RHRVKEILVE 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,736,192
Number of Sequences: 539616
Number of extensions: 1755900
Number of successful extensions: 4217
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 4168
Number of HSP's gapped (non-prelim): 81
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)