Query 033744
Match_columns 112
No_of_seqs 121 out of 782
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1770 Translation initiation 100.0 6.1E-39 1.3E-43 220.9 10.8 110 1-112 1-112 (112)
2 TIGR01160 SUI1_MOF2 translatio 100.0 2.9E-38 6.3E-43 220.2 12.1 107 4-112 2-110 (110)
3 COG0023 SUI1 Translation initi 100.0 5.1E-30 1.1E-34 177.0 9.7 102 1-110 2-104 (104)
4 cd00474 SUI1_eIF1 The SUI1/eIF 100.0 1.4E-28 3E-33 161.9 9.2 76 29-110 1-77 (77)
5 PF01253 SUI1: Translation ini 99.9 3.6E-27 7.9E-32 156.1 9.6 80 25-104 2-82 (83)
6 PRK00939 translation initiatio 99.9 3.1E-26 6.8E-31 157.1 9.4 79 24-108 20-99 (99)
7 TIGR01158 SUI1_rel translation 99.9 1.6E-24 3.6E-29 148.9 9.9 78 24-107 20-99 (101)
8 TIGR01159 DRP1 density-regulat 99.9 2.2E-24 4.8E-29 160.5 9.3 85 24-109 85-172 (173)
9 PRK09019 translation initiatio 99.9 1.7E-23 3.7E-28 145.5 10.5 74 23-101 26-101 (108)
10 PRK07451 translation initiatio 99.9 2.9E-23 6.4E-28 145.7 10.5 74 23-101 33-108 (115)
11 PRK06824 translation initiatio 99.9 2.4E-23 5.2E-28 146.7 10.1 73 24-101 37-111 (118)
12 KOG3239 Density-regulated prot 99.7 1.5E-17 3.3E-22 123.8 8.4 85 25-109 98-184 (193)
13 KOG2522 Filamentous baseplate 99.6 5.9E-15 1.3E-19 123.0 6.2 85 24-109 463-550 (560)
14 PF05046 Img2: Mitochondrial l 98.2 2.6E-05 5.7E-10 52.1 8.9 68 29-101 13-87 (87)
15 KOG4034 Uncharacterized conser 96.6 0.0065 1.4E-07 45.2 5.7 68 30-101 96-169 (169)
16 PRK14451 acylphosphatase; Prov 93.5 0.4 8.7E-06 31.9 6.2 53 45-97 8-62 (89)
17 PRK03988 translation initiatio 93.1 0.19 4.1E-06 36.3 4.5 56 37-99 37-97 (138)
18 TIGR00311 aIF-2beta translatio 92.0 0.33 7.1E-06 34.9 4.5 54 39-99 34-92 (133)
19 PRK14425 acylphosphatase; Prov 90.7 0.99 2.2E-05 30.3 5.5 53 45-97 11-65 (94)
20 PRK14450 acylphosphatase; Prov 90.7 1.5 3.2E-05 29.0 6.4 55 45-100 7-64 (91)
21 PRK14439 acylphosphatase; Prov 90.5 1.3 2.9E-05 33.0 6.6 58 43-100 78-137 (163)
22 PRK14436 acylphosphatase; Prov 90.5 1.6 3.6E-05 29.0 6.4 53 45-98 9-61 (91)
23 PRK14434 acylphosphatase; Prov 90.3 1.6 3.5E-05 29.2 6.3 54 45-98 7-61 (92)
24 PRK14446 acylphosphatase; Prov 90.2 0.98 2.1E-05 30.1 5.1 53 45-98 7-59 (88)
25 PRK14443 acylphosphatase; Prov 90.0 1.5 3.2E-05 29.6 5.9 54 45-98 9-64 (93)
26 PRK14442 acylphosphatase; Prov 89.9 1.8 3.9E-05 28.8 6.3 53 45-98 9-61 (91)
27 PRK14444 acylphosphatase; Prov 89.8 2.1 4.6E-05 28.5 6.5 55 44-99 8-62 (92)
28 PRK14435 acylphosphatase; Prov 89.6 1.8 3.9E-05 28.7 6.1 53 45-98 7-59 (90)
29 PRK14437 acylphosphatase; Prov 89.5 2 4.4E-05 29.7 6.4 53 45-97 28-82 (109)
30 PRK14428 acylphosphatase; Prov 89.5 2 4.4E-05 29.1 6.3 54 45-99 13-66 (97)
31 PRK14448 acylphosphatase; Prov 89.3 2.7 5.8E-05 27.9 6.7 54 44-97 6-61 (90)
32 smart00653 eIF2B_5 domain pres 89.2 1.1 2.3E-05 31.2 4.9 55 39-98 15-74 (110)
33 PRK14421 acylphosphatase; Prov 89.2 2.1 4.6E-05 29.1 6.3 53 45-97 9-63 (99)
34 PF00708 Acylphosphatase: Acyl 88.8 2.2 4.8E-05 27.8 6.0 54 45-98 9-64 (91)
35 PRK14438 acylphosphatase; Prov 88.7 2.1 4.6E-05 28.4 5.9 54 44-98 7-60 (91)
36 PRK12336 translation initiatio 88.5 1.1 2.5E-05 33.9 5.0 51 44-99 38-93 (201)
37 PRK14426 acylphosphatase; Prov 88.2 2.8 6.1E-05 27.8 6.3 53 45-97 9-63 (92)
38 PRK14449 acylphosphatase; Prov 87.6 2.5 5.4E-05 27.9 5.7 55 44-99 7-61 (90)
39 PRK14433 acylphosphatase; Prov 87.5 2.3 4.9E-05 28.1 5.4 54 45-99 6-59 (87)
40 PRK14430 acylphosphatase; Prov 87.4 3.3 7.1E-05 27.6 6.2 52 45-96 9-62 (92)
41 PRK14423 acylphosphatase; Prov 87.3 2.9 6.3E-05 27.8 5.9 53 45-98 10-62 (92)
42 PRK14445 acylphosphatase; Prov 87.2 2.6 5.6E-05 27.9 5.6 53 45-97 9-63 (91)
43 PRK14424 acylphosphatase; Prov 87.0 4.5 9.8E-05 27.2 6.7 55 43-97 10-66 (94)
44 PRK14420 acylphosphatase; Prov 86.9 2.6 5.6E-05 27.8 5.5 54 45-99 7-60 (91)
45 PRK14441 acylphosphatase; Prov 86.8 3.3 7.1E-05 27.6 6.0 53 45-97 10-64 (93)
46 PRK14447 acylphosphatase; Prov 86.5 3.2 6.9E-05 27.8 5.8 53 45-98 9-62 (95)
47 PRK14440 acylphosphatase; Prov 86.0 3.3 7.2E-05 27.5 5.6 53 45-98 8-60 (90)
48 PRK14422 acylphosphatase; Prov 85.6 4.2 9.2E-05 27.1 6.0 54 45-98 11-66 (93)
49 PRK14452 acylphosphatase; Prov 84.9 6.7 0.00014 27.1 6.9 52 44-96 24-75 (107)
50 PRK14432 acylphosphatase; Prov 84.0 4.9 0.00011 26.8 5.8 53 45-98 7-60 (93)
51 PRK14429 acylphosphatase; Prov 83.5 4.5 9.7E-05 26.7 5.4 53 45-97 7-61 (90)
52 PRK14427 acylphosphatase; Prov 83.4 4 8.7E-05 27.3 5.2 54 45-99 11-64 (94)
53 PRK14431 acylphosphatase; Prov 82.5 4.8 0.0001 26.7 5.2 53 45-98 7-61 (89)
54 PF01873 eIF-5_eIF-2B: Domain 74.6 4.6 9.9E-05 28.6 3.4 48 42-93 30-82 (125)
55 COG1254 AcyP Acylphosphatases 71.3 21 0.00045 24.0 5.9 53 45-98 9-61 (92)
56 PF11388 DotA: Phagosome traff 62.9 4 8.8E-05 28.1 1.1 27 45-73 3-30 (105)
57 PF11608 Limkain-b1: Limkain b 62.2 21 0.00046 24.2 4.4 32 43-74 4-36 (90)
58 PF00691 OmpA: OmpA family; I 60.0 6.9 0.00015 25.0 1.8 25 87-112 54-78 (97)
59 PRK05412 putative nucleotide-b 53.3 24 0.00053 26.3 3.9 55 41-101 92-150 (161)
60 TIGR02802 Pal_lipo peptidoglyc 52.1 9.3 0.0002 25.0 1.4 24 88-112 56-79 (104)
61 cd04885 ACT_ThrD-I Tandem C-te 51.5 20 0.00044 21.7 2.8 21 81-101 43-64 (68)
62 COG1601 GCD7 Translation initi 50.3 33 0.00072 25.2 4.2 56 37-98 39-100 (151)
63 PHA02450 hypothetical protein 45.9 10 0.00022 23.0 0.7 10 9-18 31-40 (53)
64 TIGR02433 lysidine_TilS_C tRNA 43.9 26 0.00057 19.7 2.3 25 79-104 9-34 (47)
65 PF06925 MGDG_synth: Monogalac 40.3 26 0.00056 24.9 2.3 23 89-112 145-167 (169)
66 cd04906 ACT_ThrD-I_1 First of 40.3 37 0.0008 21.6 2.9 21 81-101 45-67 (85)
67 cd02394 vigilin_like_KH K homo 39.4 79 0.0017 18.5 4.1 37 59-96 22-58 (62)
68 COG0669 CoaD Phosphopantethein 38.3 17 0.00037 27.0 1.1 37 2-39 2-41 (159)
69 PF00013 KH_1: KH domain syndr 37.6 64 0.0014 18.8 3.4 37 58-96 21-57 (60)
70 PF04461 DUF520: Protein of un 37.2 66 0.0014 24.0 4.1 54 41-100 92-149 (160)
71 COG1647 Esterase/lipase [Gener 35.4 91 0.002 24.7 4.8 70 38-111 13-91 (243)
72 PF14527 LAGLIDADG_WhiA: WhiA 34.7 44 0.00096 22.1 2.6 45 61-107 4-51 (93)
73 cd00105 KH-I K homology RNA-bi 33.7 98 0.0021 17.8 4.8 37 58-95 21-59 (64)
74 PRK10802 peptidoglycan-associa 33.4 25 0.00055 25.8 1.4 24 88-112 125-148 (173)
75 PF00381 PTS-HPr: PTS HPr comp 32.1 1.1E+02 0.0025 19.2 4.2 39 52-98 41-79 (84)
76 COG2885 OmpA Outer membrane pr 31.7 49 0.0011 24.1 2.7 57 55-112 102-162 (190)
77 cd07185 OmpA_C-like Peptidogly 31.1 34 0.00074 21.8 1.6 23 89-112 59-81 (106)
78 TIGR03350 type_VI_ompA type VI 29.9 32 0.0007 23.7 1.4 24 88-112 89-112 (137)
79 PRK12866 YciI-like protein; Re 29.9 1.2E+02 0.0025 20.2 4.1 37 66-103 37-73 (97)
80 PF04468 PSP1: PSP1 C-terminal 29.5 86 0.0019 20.4 3.3 30 39-68 52-81 (88)
81 PRK10897 phosphohistidinoprote 28.9 1.7E+02 0.0038 19.2 5.9 39 52-98 43-81 (90)
82 PF08869 XisI: XisI protein; 28.7 40 0.00086 23.6 1.6 29 80-109 66-95 (111)
83 PTZ00423 glideosome-associated 28.0 44 0.00096 25.0 1.8 18 55-72 154-171 (193)
84 KOG4616 Mitochondrial ribosoma 27.5 26 0.00056 24.9 0.5 31 33-63 98-128 (137)
85 PF15538 Toxin_61: Putative to 26.7 56 0.0012 24.3 2.2 38 61-106 4-41 (157)
86 COG2080 CoxS Aerobic-type carb 26.2 58 0.0013 24.1 2.2 29 39-67 68-97 (156)
87 PF04739 AMPKBI: 5'-AMP-activa 26.1 1.2E+02 0.0026 20.6 3.6 20 27-46 76-95 (100)
88 PF13014 KH_3: KH domain 26.0 1.1E+02 0.0024 16.8 2.9 28 59-86 13-43 (43)
89 TIGR03789 pdsO proteobacterial 25.8 44 0.00095 26.2 1.6 59 53-112 152-214 (239)
90 PF09776 Mitoc_L55: Mitochondr 25.4 18 0.00039 25.6 -0.5 31 34-64 86-116 (116)
91 PF05190 MutS_IV: MutS family 25.0 1.6E+02 0.0035 18.1 4.0 39 53-91 18-57 (92)
92 PLN03084 alpha/beta hydrolase 24.0 4E+02 0.0088 21.8 7.9 71 39-112 126-206 (383)
93 PF05005 Ocnus: Janus/Ocnus fa 23.2 2.4E+02 0.0051 19.5 4.7 41 24-64 12-56 (108)
94 PF05172 Nup35_RRM: Nup53/35/4 23.1 2.5E+02 0.0054 19.0 5.2 57 44-104 9-79 (100)
95 PF01207 Dus: Dihydrouridine s 23.1 1.7E+02 0.0036 23.3 4.5 48 55-111 110-159 (309)
96 PF06968 BATS: Biotin and Thia 22.9 57 0.0012 21.4 1.5 37 62-103 56-93 (93)
97 PF12221 HflK_N: Bacterial mem 22.6 71 0.0015 18.5 1.7 17 52-68 20-36 (42)
98 PF09840 DUF2067: Uncharacteri 22.6 2.9E+02 0.0064 20.8 5.5 46 49-95 5-50 (190)
99 PF06918 DUF1280: Protein of u 22.2 2.2E+02 0.0048 22.0 4.8 79 10-88 81-169 (224)
100 PRK10560 hofQ outer membrane p 22.0 3.3E+02 0.0071 22.3 6.1 57 52-110 100-158 (386)
101 PRK10510 putative outer membra 21.7 71 0.0015 24.3 2.0 58 54-112 130-191 (219)
102 cd00291 SirA_YedF_YeeD SirA, Y 21.6 1.9E+02 0.0041 17.0 4.1 43 48-101 6-51 (69)
103 PRK05177 minC septum formation 21.4 3.3E+02 0.0072 20.9 5.7 59 39-101 15-78 (239)
104 cd04909 ACT_PDH-BS C-terminal 21.4 1.3E+02 0.0027 17.7 2.8 21 81-101 46-67 (69)
105 PF03477 ATP-cone: ATP cone do 21.2 1.2E+02 0.0026 19.1 2.8 26 32-66 1-26 (90)
106 COG4465 CodY Pleiotropic trans 21.2 1.7E+02 0.0036 23.3 4.0 55 49-105 22-78 (261)
107 PRK10076 pyruvate formate lyas 21.2 1.2E+02 0.0026 22.9 3.2 46 52-101 18-68 (213)
108 cd04883 ACT_AcuB C-terminal AC 21.1 1.4E+02 0.003 17.5 2.9 21 81-101 46-66 (72)
109 PF03958 Secretin_N: Bacterial 20.8 2.1E+02 0.0046 17.3 5.3 46 52-98 8-75 (82)
110 PF12229 PG_binding_4: Putativ 20.7 2.3E+02 0.0051 17.8 4.4 31 39-69 78-109 (114)
111 cd04882 ACT_Bt0572_2 C-termina 20.7 1.5E+02 0.0031 16.9 2.9 20 82-101 43-62 (65)
112 PF04459 DUF512: Protein of un 20.6 1.6E+02 0.0034 22.4 3.7 50 38-87 95-146 (204)
113 PRK13430 F0F1 ATP synthase sub 20.5 2.8E+02 0.0062 21.7 5.3 49 36-84 196-249 (271)
114 KOG1454 Predicted hydrolase/ac 20.4 3.5E+02 0.0075 21.6 5.8 55 39-97 263-318 (326)
115 PRK13434 F0F1 ATP synthase sub 20.3 2.4E+02 0.0051 20.6 4.5 50 37-86 101-155 (184)
No 1
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-39 Score=220.89 Aligned_cols=110 Identities=55% Similarity=0.896 Sum_probs=104.3
Q ss_pred CCcccccCCCCCCCCcCCcCCC--CCCCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCC
Q 033744 1 MVDIDSQIPTSYDPFADIKDSL--APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVL 78 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~--~~~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~ 78 (112)
|++++++ .+||||+++.+++ .++..+.||||+|+|+|||++|+|+||+.++|++++++.|||.|||+|+|.++|++
T Consensus 1 e~~iq~~--~~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~ 78 (112)
T KOG1770|consen 1 EHIIQNL--EDFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEY 78 (112)
T ss_pred Cccccch--hhcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCccc
Confidence 6777775 5999999998873 67888899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 79 GKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 79 g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|++|+||||||.++.+||...|++.+.+|+||||
T Consensus 79 gevIQLqGDqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 79 GEVIQLQGDQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred CceEEeccchhhhHHHHHHHhccccccceeecCC
Confidence 9999999999999999999999999999999998
No 2
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=100.00 E-value=2.9e-38 Score=220.15 Aligned_cols=107 Identities=56% Similarity=0.966 Sum_probs=97.4
Q ss_pred ccccCCCCCCCCcCCcCCCCC--CCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeE
Q 033744 4 IDSQIPTSYDPFADIKDSLAP--GDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKV 81 (112)
Q Consensus 4 ~~~~~~~~~dpf~~~~~~~~~--~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~ 81 (112)
++++ .+||||+++.+++-. ...+.||||+++|+|||.||+|+||+..+|+++|+|.||++|||||||+++++++++
T Consensus 2 ~~~~--~~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~ 79 (110)
T TIGR01160 2 IQNL--KSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEV 79 (110)
T ss_pred cccc--cCCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCE
Confidence 4565 489999998665521 457789999999999999999999998999999999999999999999998888899
Q ss_pred EEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 82 IQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 82 I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|+||||||++|++||.++||+++++|++|||
T Consensus 80 IelQGD~re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 80 IQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred EEEeCcHHHHHHHHHHHcCCCCHHHeeecCC
Confidence 9999999999999999999999999999997
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.1e-30 Score=177.01 Aligned_cols=102 Identities=29% Similarity=0.412 Sum_probs=87.4
Q ss_pred CCcccccCCCCCCCCcCCcCCCCCCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCC
Q 033744 1 MVDIDSQIPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLG 79 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~~~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g 79 (112)
|++.+.. ...+|++...+...+...+.|+|++++|++||.||+|+||+. ++|+++||+.||++|||||||++
T Consensus 2 ~~~~~~~--~~~~p~e~~~~~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~----- 74 (104)
T COG0023 2 MYSTICG--RIGLPKELTCEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD----- 74 (104)
T ss_pred cccccCC--CCCCchHHhhhhcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC-----
Confidence 3444443 246787776333334558999999999999999999999999 99999999999999999999985
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCCCCCeEEc
Q 033744 80 KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 80 ~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
.+|+||||||++|.+||.++|| +.++|.+|
T Consensus 75 ~~IeiQGdhr~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 75 GEIEIQGDHRDKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred CEEEEeChHHHHHHHHHHHcCC-chhhcccC
Confidence 5999999999999999999999 99999875
No 4
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.96 E-value=1.4e-28 Score=161.91 Aligned_cols=76 Identities=51% Similarity=0.773 Sum_probs=72.0
Q ss_pred eEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCCCCCe
Q 033744 29 YVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRI 107 (112)
Q Consensus 29 ~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I 107 (112)
.|+|++++|++||.||+|+||+. .+|++++||.||++|||||||++ .+|+||||||++|++||.++|| ++++|
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~-~~~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGF-AKDNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCC-CHHHe
Confidence 38999999999999999999999 78999999999999999999984 6999999999999999999999 55999
Q ss_pred EEc
Q 033744 108 KIH 110 (112)
Q Consensus 108 ~ih 110 (112)
+||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 998
No 5
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.95 E-value=3.6e-27 Score=156.08 Aligned_cols=80 Identities=38% Similarity=0.652 Sum_probs=69.2
Q ss_pred CCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCC
Q 033744 25 GDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVD 103 (112)
Q Consensus 25 ~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~ 103 (112)
++.++|+|++++|+|||+||+|+||+. ++|+++||++|+++|||||||.++|+.+.+|+|||||+++|.++|.++|++|
T Consensus 2 ~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~~ 81 (83)
T PF01253_consen 2 KEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGIP 81 (83)
T ss_dssp S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSSE
T ss_pred CCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCCC
Confidence 577899999999999999999999998 9999999999999999999999888667899999999999999999999855
Q ss_pred C
Q 033744 104 K 104 (112)
Q Consensus 104 ~ 104 (112)
+
T Consensus 82 k 82 (83)
T PF01253_consen 82 K 82 (83)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.94 E-value=3.1e-26 Score=157.06 Aligned_cols=79 Identities=29% Similarity=0.566 Sum_probs=73.5
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCC
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIV 102 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~ 102 (112)
+.+.+.|+|++++|+|||+||+|+||+. ++|+++++|.||++|||||||++ .+|+||||||++|++||.++||
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~- 93 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGF- 93 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCC-
Confidence 3456899999999999999999999998 99999999999999999999974 5799999999999999999999
Q ss_pred CCCCeE
Q 033744 103 DKDRIK 108 (112)
Q Consensus 103 ~~~~I~ 108 (112)
|.+||+
T Consensus 94 ~~~~i~ 99 (99)
T PRK00939 94 SEENIE 99 (99)
T ss_pred ChhhcC
Confidence 988874
No 7
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.92 E-value=1.6e-24 Score=148.93 Aligned_cols=78 Identities=32% Similarity=0.530 Sum_probs=72.0
Q ss_pred CCCCceEEEEEEEe-cCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 24 PGDKGYVHLRVQQR-NGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 24 ~~~~~~I~I~~~~R-~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+.+.+.|+|++++| +++|.||+|+||+. ..|+++++|.||++||||||+++ .+|+|||||+++|.++|.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 45889999999998 89999999999998 89999999999999999999973 6899999999999999999999
Q ss_pred CCCCCe
Q 033744 102 VDKDRI 107 (112)
Q Consensus 102 ~~~~~I 107 (112)
+..++
T Consensus 95 -~~k~~ 99 (101)
T TIGR01158 95 -KVKLI 99 (101)
T ss_pred -Ceeec
Confidence 76654
No 8
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.91 E-value=2.2e-24 Score=160.50 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=79.3
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC--C
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS--K 100 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~--G 100 (112)
.+.+++|+|++++|++||.||+|+||+. ++|+++++|.|+++||||+||.+.+.++.+|+|||||+++|.++|.++ .
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 4578899999999999999999999999 999999999999999999999988888889999999999999999998 5
Q ss_pred CCCCCCeEE
Q 033744 101 IVDKDRIKI 109 (112)
Q Consensus 101 ~~~~~~I~i 109 (112)
+ |+++|+.
T Consensus 165 v-~e~~I~~ 172 (173)
T TIGR01159 165 V-GDKDIKD 172 (173)
T ss_pred C-CHHHeee
Confidence 5 8888874
No 9
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.90 E-value=1.7e-23 Score=145.46 Aligned_cols=74 Identities=30% Similarity=0.468 Sum_probs=66.7
Q ss_pred CCCCCceEEEEEEE-ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCC
Q 033744 23 APGDKGYVHLRVQQ-RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSK 100 (112)
Q Consensus 23 ~~~~~~~I~I~~~~-R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G 100 (112)
++...+.|+|+.++ ++++|.||+|+||+. +.|+++|+|.||++|||||||++ .+|+||||||++|.+||.++|
T Consensus 26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-----~~IelQGD~r~~v~~~L~~~G 100 (108)
T PRK09019 26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKG 100 (108)
T ss_pred CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-----CEEEEcCcHHHHHHHHHHHCC
Confidence 45577788888774 457789999999997 99999999999999999999984 689999999999999999999
Q ss_pred C
Q 033744 101 I 101 (112)
Q Consensus 101 ~ 101 (112)
|
T Consensus 101 f 101 (108)
T PRK09019 101 M 101 (108)
T ss_pred C
Confidence 9
No 10
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.90 E-value=2.9e-23 Score=145.68 Aligned_cols=74 Identities=26% Similarity=0.463 Sum_probs=66.7
Q ss_pred CCCCCceEEEEEEE-ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCC
Q 033744 23 APGDKGYVHLRVQQ-RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSK 100 (112)
Q Consensus 23 ~~~~~~~I~I~~~~-R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G 100 (112)
++.+.+.|+|++++ ++++|.||+|+||+. +.|+++|+|.||++||||||+++ .+|+||||||++|.+||.++|
T Consensus 33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd-----~~IelQGD~r~~v~~~L~~~G 107 (115)
T PRK07451 33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKILEILIKLG 107 (115)
T ss_pred CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC-----CEEEEcCcHHHHHHHHHHHCC
Confidence 55677788888764 557799999999998 89999999999999999999974 689999999999999999999
Q ss_pred C
Q 033744 101 I 101 (112)
Q Consensus 101 ~ 101 (112)
|
T Consensus 108 f 108 (115)
T PRK07451 108 Y 108 (115)
T ss_pred C
Confidence 9
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.90 E-value=2.4e-23 Score=146.71 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=66.9
Q ss_pred CCCCceEEEEEEE-ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 24 PGDKGYVHLRVQQ-RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 24 ~~~~~~I~I~~~~-R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+...+.|+|++++ |+++|.||+|+||+. +.|+++|+|.||++|||||||++ ++|+||||||++|++||.++||
T Consensus 37 ~~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~ 111 (118)
T PRK06824 37 PAGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGF 111 (118)
T ss_pred CCcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCC
Confidence 3456699998885 579999999999997 99999999999999999999984 6999999999999999999999
No 12
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=123.84 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC-CCC
Q 033744 25 GDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS-KIV 102 (112)
Q Consensus 25 ~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~-G~~ 102 (112)
+-+++|.|..+.|+.||+||+|+||+. ++|+++++|.|.++||||+||++.++..++|.||||..+.|.+|+.++ --+
T Consensus 98 ~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev 177 (193)
T KOG3239|consen 98 RLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEV 177 (193)
T ss_pred cCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccC
Confidence 346789999999999999999999999 999999999999999999999988888889999999999999999997 455
Q ss_pred CCCCeEE
Q 033744 103 DKDRIKI 109 (112)
Q Consensus 103 ~~~~I~i 109 (112)
|.++..|
T Consensus 178 ~ed~~~I 184 (193)
T KOG3239|consen 178 PEDDVKI 184 (193)
T ss_pred Cccccee
Confidence 7775444
No 13
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=5.9e-15 Score=123.01 Aligned_cols=85 Identities=25% Similarity=0.306 Sum_probs=79.9
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCC-CeEEEEcCchhHHHHHHHHhC-C
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVL-GKVIQLQGDHRKNVMIFLVKS-K 100 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~-g~~I~lQGD~~~~i~~~L~~~-G 100 (112)
+|...+|.|.+++|.|||.||.|+||+. ++|+..++..|++.|+|+.||.+.|+. |-+++|||+|.+.|.++|.+. |
T Consensus 463 Kgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~yg 542 (560)
T KOG2522|consen 463 KGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSYG 542 (560)
T ss_pred cCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhhC
Confidence 6788999999999999999999999999 999999999999999999999999974 689999999999999999996 8
Q ss_pred CCCCCCeEE
Q 033744 101 IVDKDRIKI 109 (112)
Q Consensus 101 ~~~~~~I~i 109 (112)
+ |+.+|+.
T Consensus 543 i-pkK~I~g 550 (560)
T KOG2522|consen 543 I-PKKWIDG 550 (560)
T ss_pred C-CHHHHhH
Confidence 8 9998864
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=98.16 E-value=2.6e-05 Score=52.11 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=49.4
Q ss_pred eEEEEEEE-ecCCeeEEEEecCCCchhHHHHHHHHhhHhc------cCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 29 YVHLRVQQ-RNGKKCLTTVQGLKEDFGYQKILKDLKKEFC------CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 29 ~I~I~~~~-R~grK~VT~V~GL~~~~dlk~lak~lKk~~a------cggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
.+-|.... +.|.+.+|+|+-++. |+..|.++|++.|. ....|.+ ....|+|+||+.+.|++||.++||
T Consensus 13 ~LPVY~~~k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~---~~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 13 NLPVYLDIKNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNE---LTGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred cccEEEEEeCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEee---cCCEEEEcCccHHHHHHHHHHCcC
Confidence 34455543 447899999999976 45666677776664 2334432 245799999999999999999997
No 15
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=96.59 E-value=0.0065 Score=45.19 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=46.6
Q ss_pred EEEEEEE-ecCCeeEEEEecCCCc-----hhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 30 VHLRVQQ-RNGKKCLTTVQGLKED-----FGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 30 I~I~~~~-R~grK~VT~V~GL~~~-----~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+-+.... ++|+|.+|+|+.++.+ -||...+...-++--| .-|.+ -.+.|.+-|||.+.|++||.++||
T Consensus 96 lPVYl~~k~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vne---lsgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 96 LPVYLDYKQRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNE---LSGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred cceEEeeecCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhh---hcceEEEeCChHHHHHHHHHHccC
Confidence 3444443 4499999999999873 3555555554443333 22322 135799999999999999999997
No 16
>PRK14451 acylphosphatase; Provisional
Probab=93.51 E-value=0.4 Score=31.86 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=41.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+.++++..|.|+-.+++.-+|++||+- .++..++|.
T Consensus 8 ~V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 8 YISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 37787778888999999999999999998655555789999985 444444554
No 17
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=93.12 E-value=0.19 Score=36.34 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=43.5
Q ss_pred ecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 37 RNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 37 R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
+-|+| |++.++.+ .=+.+-++|.|.+.+|+.|++ + ++...|+|.+..+..+-+...
T Consensus 37 ~eG~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~----~~~lii~G~~~~~~i~~~L~~ 97 (138)
T PRK03988 37 IEGNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-E----GGRLILQGKFSPRVINEKIDR 97 (138)
T ss_pred EEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-c----CCEEEEEEeeCHHHHHHHHHH
Confidence 44555 89999986 236899999999999999999 4 578999999776655555443
No 18
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=92.03 E-value=0.33 Score=34.89 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=42.5
Q ss_pred CCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 39 GKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 39 grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
|+| |++.++.+ .=+.+-+.|.|.+.+|+.|++. +....|+|.+.....+-+...
T Consensus 34 G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-----~~rlii~G~~~~~~i~~~L~~ 92 (133)
T TIGR00311 34 GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-----GGRLILQGKFTHFLLNERIED 92 (133)
T ss_pred cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-----CCEEEEEeecCHHHHHHHHHH
Confidence 555 99999986 2368999999999999999994 457999999877665555443
No 19
>PRK14425 acylphosphatase; Provisional
Probab=90.66 E-value=0.99 Score=30.25 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=41.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+.++++=.|.|+-.+++.-+|++||+ ..++..+.|.
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 11 RITGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEEEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 4567666778888889999999999999865555578999996 4466666666
No 20
>PRK14450 acylphosphatase; Provisional
Probab=90.65 E-value=1.5 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=43.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCC-eEEEEcCc--hhHHHHHHHHhCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLG-KVIQLQGD--HRKNVMIFLVKSK 100 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g-~~I~lQGD--~~~~i~~~L~~~G 100 (112)
+|+|.-.++-+...+..+..+++=.|.|+-.+++. -+|++||+ ..+...++|. +|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 56777777788888999999999999998555553 57999999 6777777775 45
No 21
>PRK14439 acylphosphatase; Provisional
Probab=90.55 E-value=1.3 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=44.9
Q ss_pred EEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCC
Q 033744 43 LTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSK 100 (112)
Q Consensus 43 VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G 100 (112)
--.|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+. .+...+.|.+.|
T Consensus 78 ~i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 78 IAWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 3467888888888999999999999999998656666789999985 555555555444
No 22
>PRK14436 acylphosphatase; Provisional
Probab=90.46 E-value=1.6 Score=29.01 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=40.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 9 RIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 46777677788888999999999999998655555689999985 335555544
No 23
>PRK14434 acylphosphatase; Provisional
Probab=90.27 E-value=1.6 Score=29.17 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=40.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhc-cCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFC-CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~a-cggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+.-.+..+.++++ =.|.|.-.+++.-+|++||+..+.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~ 61 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQE 61 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHH
Confidence 56777777778888899999999 9999985555557899999755445555444
No 24
>PRK14446 acylphosphatase; Provisional
Probab=90.22 E-value=0.98 Score=30.08 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=40.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+.-.+..+.++++=.|.|.-.+++.-+|++||+-. .|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 567777777888889999999999999986666667899999853 44444443
No 25
>PRK14443 acylphosphatase; Provisional
Probab=89.98 E-value=1.5 Score=29.59 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=41.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+..+++=.|.|+-.+++.-+|++||+ ..+...+.|.+
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 9 RVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred EEEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 4567666777888889999999999999866666678999999 55555555544
No 26
>PRK14442 acylphosphatase; Provisional
Probab=89.90 E-value=1.8 Score=28.77 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=40.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+.. .|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 61 (91)
T PRK14442 9 YVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERW 61 (91)
T ss_pred EEEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHH
Confidence 567877778888889999999999999986666657899999854 34444443
No 27
>PRK14444 acylphosphatase; Provisional
Probab=89.75 E-value=2.1 Score=28.48 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=41.2
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
-+|+|.-.++-+...+..+.++++=+|.|+-.+++.-+|++||+- ++|.+|+...
T Consensus 8 i~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l 62 (92)
T PRK14444 8 VFISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWC 62 (92)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHH
Confidence 356787778888888999999999999998555544689999994 3355555443
No 28
>PRK14435 acylphosphatase; Provisional
Probab=89.63 E-value=1.8 Score=28.73 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=40.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+- ++|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 7 RVEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 56777777788888899999999999998766666789999985 334444443
No 29
>PRK14437 acylphosphatase; Provisional
Probab=89.51 E-value=2 Score=29.72 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=41.7
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
.|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+.. +...++|.
T Consensus 28 ~V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 28 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 467777788888899999999999999986666657899999964 55555554
No 30
>PRK14428 acylphosphatase; Provisional
Probab=89.47 E-value=2 Score=29.10 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=41.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+.-.+..+.++++=.|.|.-.+++.-+|++||+. +.|.+|+...
T Consensus 13 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l 66 (97)
T PRK14428 13 VVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQL 66 (97)
T ss_pred EEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHH
Confidence 56777777788888999999999999998655555789999985 4455555443
No 31
>PRK14448 acylphosphatase; Provisional
Probab=89.28 E-value=2.7 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=42.2
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
-.|+|.-.++-+....+.+..+++=.|.|+-.+++.-+|++||+- .+...++|.
T Consensus 6 ~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 6 FIVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred EEEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 367777778888899999999999999998766665789999985 444455553
No 32
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=89.24 E-value=1.1 Score=31.23 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=42.2
Q ss_pred CCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 39 GKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 39 grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
|+| -|++.++.+ .=+++-+.|.|.+.+|+.|++.+ .....|+|.+..+-.+-+..
T Consensus 15 G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~~~l~ 74 (110)
T smart00653 15 GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----KGRLIVNGRFTPKKLQDLLR 74 (110)
T ss_pred cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----CCeEEEEEeeCHHHHHHHHH
Confidence 543 688899876 23689999999999999999952 26799999987665555444
No 33
>PRK14421 acylphosphatase; Provisional
Probab=89.20 E-value=2.1 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=40.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
+|+|.-.++-+...+..+.++++=.|.|+-.+++.-+|++||+-. +...++|.
T Consensus 9 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 9 TIRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred EEEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 567777777888889999999999999985555547899999863 44444444
No 34
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=88.80 E-value=2.2 Score=27.83 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=39.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+- .+.+.++|..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 67887778888999999999999999998655554689999974 3444444444
No 35
>PRK14438 acylphosphatase; Provisional
Probab=88.70 E-value=2.1 Score=28.40 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
-.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|.+||+- ++|.+|+..
T Consensus 7 i~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 7 VTVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 356777778888889999999999999998555554689999985 335555544
No 36
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=88.46 E-value=1.1 Score=33.92 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=40.7
Q ss_pred EEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 44 TTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 44 T~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
|++.+|.+ .=+.+-+.|.|.+.||+.|++. +....|+|.+..+-.+-+...
T Consensus 38 T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-----~~~~ii~G~~~~~~i~~~l~~ 93 (201)
T PRK12336 38 TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-----GGRAVFNGKFTEEDIQAAIDA 93 (201)
T ss_pred EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-----CCEEEEEeeeCHHHHHHHHHH
Confidence 89999986 2368999999999999999994 357899999876665555543
No 37
>PRK14426 acylphosphatase; Provisional
Probab=88.20 E-value=2.8 Score=27.85 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=40.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+. .+.+.++|.
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (92)
T PRK14426 9 WVYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLK 63 (92)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHh
Confidence 56777677788888999999999999998666666789999995 444444444
No 38
>PRK14449 acylphosphatase; Provisional
Probab=87.57 E-value=2.5 Score=27.94 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=41.8
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
-+|+|.-.++-+...+..+..+++=.|.|.-.+++.-+|++||+. +.|.+|+...
T Consensus 7 i~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l 61 (90)
T PRK14449 7 LRITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINFI 61 (90)
T ss_pred EEEEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHHH
Confidence 356777678888888999999999999998655555789999986 3355555543
No 39
>PRK14433 acylphosphatase; Provisional
Probab=87.50 E-value=2.3 Score=28.11 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=41.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...++.+..+++=+|.|+-.+++.-+|++|||-. .|.+|+...
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l 59 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWL 59 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHH
Confidence 567766677888889999999999999986666557899999963 565555543
No 40
>PRK14430 acylphosphatase; Provisional
Probab=87.38 E-value=3.3 Score=27.64 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=39.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFL 96 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L 96 (112)
.|.|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+- .+.+.++|
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 9 VAHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 56676666777888889999999999998655555789999984 35555555
No 41
>PRK14423 acylphosphatase; Provisional
Probab=87.32 E-value=2.9 Score=27.79 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=39.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+.. .|.+|+..
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 10 FVSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 457777777888889999999999999985544445899999854 45554444
No 42
>PRK14445 acylphosphatase; Provisional
Probab=87.18 E-value=2.6 Score=27.93 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=39.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
+|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+- .+...++|.
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 9 IVSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred EEEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 56777677788888999999999999998555554689999986 444444444
No 43
>PRK14424 acylphosphatase; Provisional
Probab=86.96 E-value=4.5 Score=27.18 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=42.0
Q ss_pred EEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 43 LTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 43 VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
--+|+|.-.++-+...+..+..+++=.|.|+-.+++.-+|.+||+-. +...++|.
T Consensus 10 ~~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 10 YVRVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred EEEEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 34677777777888889999999999999986665557899999863 45555554
No 44
>PRK14420 acylphosphatase; Provisional
Probab=86.89 E-value=2.6 Score=27.80 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=41.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...+..+..+++=.|.|.-.+++.-+|++||+- +.|.+|+...
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l 60 (91)
T PRK14420 7 IVDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAI 60 (91)
T ss_pred EEEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHH
Confidence 56676667777888888889999999998665555789999974 5566666554
No 45
>PRK14441 acylphosphatase; Provisional
Probab=86.79 E-value=3.3 Score=27.63 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=39.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+- .+...++|.
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 10 VVSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred EEEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 45777777788888999999999999997555554689999983 344444443
No 46
>PRK14447 acylphosphatase; Provisional
Probab=86.47 E-value=3.2 Score=27.78 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=40.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCC-CeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVL-GKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~-g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+.-.++.+.++++=.|.|.-.+++ .-+|++||+ .+.|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 5677777888888999999999999999855554 257999998 4455555443
No 47
>PRK14440 acylphosphatase; Provisional
Probab=85.95 E-value=3.3 Score=27.46 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=39.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 8 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 56676667778888888999999999998555555689999976 445555444
No 48
>PRK14422 acylphosphatase; Provisional
Probab=85.60 E-value=4.2 Score=27.12 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=41.2
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+.. +.+.++|.+
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 11 WVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 567777777888889999999999999986655557899999864 444444443
No 49
>PRK14452 acylphosphatase; Provisional
Probab=84.95 E-value=6.7 Score=27.06 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHH
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFL 96 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L 96 (112)
-.|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+.. .|.+|+
T Consensus 24 i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 24 FLIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 3567777788888889999999999999986555557899999953 455553
No 50
>PRK14432 acylphosphatase; Provisional
Probab=84.02 E-value=4.9 Score=26.82 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=40.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEc-CchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQ-GDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQ-GD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++| ||. +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~ 60 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKL 60 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHH
Confidence 56777777788888899999999999998665555689998 985 445555544
No 51
>PRK14429 acylphosphatase; Provisional
Probab=83.52 E-value=4.5 Score=26.72 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+-. +...++|.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 61 (90)
T PRK14429 7 KLTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE 61 (90)
T ss_pred EEEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 456776677788889999999999999985555556899999864 55555554
No 52
>PRK14427 acylphosphatase; Provisional
Probab=83.36 E-value=4 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=40.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+.. .|.+|+...
T Consensus 11 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~l 64 (94)
T PRK14427 11 RVFGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDWL 64 (94)
T ss_pred EEEEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHH
Confidence 456666677788888999999999999986555556899999863 355555443
No 53
>PRK14431 acylphosphatase; Provisional
Probab=82.49 E-value=4.8 Score=26.66 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.++ +-+|++||+. .++..++|.+
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 7 QVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred EEEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 567777777788889999999999999986655 5789999985 5555555554
No 54
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=74.64 E-value=4.6 Score=28.62 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=37.8
Q ss_pred eEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHH
Q 033744 42 CLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVM 93 (112)
Q Consensus 42 ~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~ 93 (112)
.=|++.++.+ .=+++-++|.|.+.+|+.|++.+ .....|+|.+..+-.
T Consensus 30 ~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~----~~~lii~G~~~~~~i 82 (125)
T PF01873_consen 30 KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDG----KGRLIINGRFSSKQI 82 (125)
T ss_dssp TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEET----TTEEEEESSSSCCHH
T ss_pred ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECC----CCEEEEEEecCHHHH
Confidence 5588888876 23799999999999999999963 267999999654433
No 55
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=71.26 E-value=21 Score=23.97 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=41.9
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|.|--.++.+...++.....++-.|.|+-.+++.-+|.++|+--. +.+|+..
T Consensus 9 ~V~GrVQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 9 RVYGRVQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred EEEEEeccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHH
Confidence 5677777888888999999999999999876776678999999655 5555443
No 56
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=62.88 E-value=4 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=22.2
Q ss_pred EEecCCC-chhHHHHHHHHhhHhccCcEEE
Q 033744 45 TVQGLKE-DFGYQKILKDLKKEFCCNGNVV 73 (112)
Q Consensus 45 ~V~GL~~-~~dlk~lak~lKk~~acggsv~ 73 (112)
.++||+. .+|...|.|.|++ -|.++..
T Consensus 3 s~tgle~s~fd~~ql~k~f~~--tc~~~~a 30 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGK--TCQGDYA 30 (105)
T ss_pred cccccccccCCHHHhhhhhhc--cccCchH
Confidence 4689999 9999999999999 4666553
No 57
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=62.20 E-value=21 Score=24.20 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEEEecCCCchhHHHHHHHHhhHh-ccCcEEEe
Q 033744 43 LTTVQGLKEDFGYQKILKDLKKEF-CCNGNVVN 74 (112)
Q Consensus 43 VT~V~GL~~~~dlk~lak~lKk~~-acggsv~~ 74 (112)
+-.|.+|+...|...+...|++-+ .|||-|..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~ 36 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS 36 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE
Confidence 457899999889999988888776 69988863
No 58
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=59.97 E-value=6.9 Score=24.99 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=20.2
Q ss_pred chhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 87 DHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 87 D~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.....|+++|...|+ +++.|.+.|+
T Consensus 54 ~RA~~V~~~L~~~gi-~~~ri~~~~~ 78 (97)
T PF00691_consen 54 RRAEAVKQYLVENGI-PPERISVVGY 78 (97)
T ss_dssp HHHHHHHHHHHHTTS-SGGGEEEEEE
T ss_pred HHHHHHHHHHHHcCC-ChHhEEEEEE
Confidence 345689999999999 8888987663
No 59
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=53.27 E-value=24 Score=26.26 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=37.2
Q ss_pred eeEEEEecCCCchhHHHHHHHHhh-HhccCcEEEecCCCCeEEEEcCchhH---HHHHHHHhCCC
Q 033744 41 KCLTTVQGLKEDFGYQKILKDLKK-EFCCNGNVVNDKVLGKVIQLQGDHRK---NVMIFLVKSKI 101 (112)
Q Consensus 41 K~VT~V~GL~~~~dlk~lak~lKk-~~acggsv~~~p~~g~~I~lQGD~~~---~i~~~L~~~G~ 101 (112)
-.+++..||+.+ ..+++.|.+|- ++=.-+++. |++|-|.|-.|+ .+..+|.+..+
T Consensus 92 q~i~lk~GI~~e-~AKkIvK~IKd~klKVqa~IQ-----Gd~vRVtgKkrDDLQ~viallk~~d~ 150 (161)
T PRK05412 92 QEVKLKQGIDQE-LAKKIVKLIKDSKLKVQAQIQ-----GDQVRVTGKKRDDLQAVIALLRKADL 150 (161)
T ss_pred EEEehhhccCHH-HHHHHHHHHHhcCCceeEEec-----CcEEEEecCCHhHHHHHHHHHHhccC
Confidence 467888889863 35666666653 233566665 789999997777 66677776633
No 60
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=52.08 E-value=9.3 Score=25.01 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|.+.|+ +++.|.+.||
T Consensus 56 RA~~V~~~L~~~gi-~~~ri~~~g~ 79 (104)
T TIGR02802 56 RANAVKDYLQAKGV-SASQIETVSY 79 (104)
T ss_pred HHHHHHHHHHHcCC-CHHHeEEEee
Confidence 45679999999999 8888988775
No 61
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.49 E-value=20 Score=21.74 Aligned_cols=21 Identities=14% Similarity=-0.016 Sum_probs=19.0
Q ss_pred EEEEcC-chhHHHHHHHHhCCC
Q 033744 81 VIQLQG-DHRKNVMIFLVKSKI 101 (112)
Q Consensus 81 ~I~lQG-D~~~~i~~~L~~~G~ 101 (112)
.|++++ +|.+.+.+.|.+.||
T Consensus 43 ~ie~~~~~~~~~i~~~L~~~G~ 64 (68)
T cd04885 43 GIQVPDREDLAELKERLEALGY 64 (68)
T ss_pred EEEeCCHHHHHHHHHHHHHcCC
Confidence 578888 799999999999998
No 62
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=50.31 E-value=33 Score=25.18 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=37.7
Q ss_pred ecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc-hhHHHHHHHHh
Q 033744 37 RNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD-HRKNVMIFLVK 98 (112)
Q Consensus 37 R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD-~~~~i~~~L~~ 98 (112)
|.|++ |++.++.+ ..|++-+++.|++.++.+|++.. ...+.+||- .++.|.+.|..
T Consensus 39 ~~g~~--Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~----~~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 39 REGNR--TIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDG----KGRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred cccch--hHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCC----cceEEEEecccHHHHHHHHHH
Confidence 44544 45555432 56899999999999999999962 156778887 44455554443
No 63
>PHA02450 hypothetical protein
Probab=45.92 E-value=10 Score=22.96 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=8.5
Q ss_pred CCCCCCCcCC
Q 033744 9 PTSYDPFADI 18 (112)
Q Consensus 9 ~~~~dpf~~~ 18 (112)
|++||||-..
T Consensus 31 pg~fdpfcpd 40 (53)
T PHA02450 31 PGQFDPFCPD 40 (53)
T ss_pred CCccCCCCCC
Confidence 7899999873
No 64
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=43.92 E-value=26 Score=19.68 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=20.6
Q ss_pred CeEEEEcCc-hhHHHHHHHHhCCCCCC
Q 033744 79 GKVIQLQGD-HRKNVMIFLVKSKIVDK 104 (112)
Q Consensus 79 g~~I~lQGD-~~~~i~~~L~~~G~~~~ 104 (112)
|+.|.+.|. +..+|+++|.+.++ |+
T Consensus 9 gd~~~~~g~~~~k~lkk~~~e~ki-P~ 34 (47)
T TIGR02433 9 GDRIKLLGRKGSKKLKKLFIDAKV-PP 34 (47)
T ss_pred CCEEEECCCCCCchHHHHHHHcCC-CH
Confidence 556888876 68899999999998 64
No 65
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=40.34 E-value=26 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.2
Q ss_pred hHHHHHHHHhCCCCCCCCeEEccC
Q 033744 89 RKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 89 ~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.+.+++.|.+.|+ +++.|.+.|+
T Consensus 145 se~~~~~l~~~Gi-~~~~I~vtGi 167 (169)
T PF06925_consen 145 SEEVKEELIERGI-PPERIHVTGI 167 (169)
T ss_pred CHHHHHHHHHcCC-ChhHEEEeCc
Confidence 4688899999999 9999999985
No 66
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.25 E-value=37 Score=21.63 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=18.8
Q ss_pred EEEEcC--chhHHHHHHHHhCCC
Q 033744 81 VIQLQG--DHRKNVMIFLVKSKI 101 (112)
Q Consensus 81 ~I~lQG--D~~~~i~~~L~~~G~ 101 (112)
.|++.+ +|.+.+.+.|.+.||
T Consensus 45 ~ie~~~~~~~~~~i~~~L~~~G~ 67 (85)
T cd04906 45 GVSVANGAEELAELLEDLKSAGY 67 (85)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCC
Confidence 467888 899999999999998
No 67
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=39.38 E-value=79 Score=18.48 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHH
Q 033744 59 LKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFL 96 (112)
Q Consensus 59 ak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L 96 (112)
.+.|..+++|.-.+.........|.|.|. .+.+....
T Consensus 22 i~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A~ 58 (62)
T cd02394 22 IRKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKAK 58 (62)
T ss_pred HHHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHHH
Confidence 35566677777666432223467999999 56666543
No 68
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=38.35 E-value=17 Score=27.02 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=19.1
Q ss_pred CcccccCCCCCCCCcCCcCCCC---CCCCceEEEEEEEecC
Q 033744 2 VDIDSQIPTSYDPFADIKDSLA---PGDKGYVHLRVQQRNG 39 (112)
Q Consensus 2 ~~~~~~~~~~~dpf~~~~~~~~---~~~~~~I~I~~~~R~g 39 (112)
+.+-.+ ||||||+.+.--+-. ..--..|.|-+-.--+
T Consensus 2 ~~iavy-pGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np~ 41 (159)
T COG0669 2 MKIAVY-PGSFDPITNGHLDIIKRASALFDEVIVAVAINPS 41 (159)
T ss_pred CeeEEe-CCCCCCCccchHHHHHHHHHhccEEEEEEEeCCC
Confidence 333343 899999998322111 1223456665554333
No 69
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=37.62 E-value=64 Score=18.78 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHH
Q 033744 58 ILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFL 96 (112)
Q Consensus 58 lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L 96 (112)
..+.+.+.++|.-.+.++ +....|.|.| ..+.+.+.+
T Consensus 21 ~i~~I~~~t~~~I~i~~~-~~~~~v~I~G-~~~~v~~A~ 57 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIPDD-DERDIVTISG-SPEQVEKAK 57 (60)
T ss_dssp HHHHHHHHHTSEEEEEST-TEEEEEEEEE-SHHHHHHHH
T ss_pred cHHHhhhhcCeEEEEcCC-CCcEEEEEEe-CHHHHHHHH
Confidence 467888999999888643 2224899999 666666654
No 70
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=37.24 E-value=66 Score=23.96 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=30.4
Q ss_pred eeEEEEecCCCchhHHHHHHHHhh-HhccCcEEEecCCCCeEEEEcCchhHHH---HHHHHhCC
Q 033744 41 KCLTTVQGLKEDFGYQKILKDLKK-EFCCNGNVVNDKVLGKVIQLQGDHRKNV---MIFLVKSK 100 (112)
Q Consensus 41 K~VT~V~GL~~~~dlk~lak~lKk-~~acggsv~~~p~~g~~I~lQGD~~~~i---~~~L~~~G 100 (112)
..+|+..||+.+ ..+++.|.+|. ++=..+++. |++|-|.|-.|+.+ ..+|.+..
T Consensus 92 q~i~lk~GI~~d-~AKkIvK~IKd~klKVqa~IQ-----gd~vRVtgKkrDDLQ~viallk~~d 149 (160)
T PF04461_consen 92 QVIKLKQGIDQD-TAKKIVKLIKDSKLKVQAQIQ-----GDQVRVTGKKRDDLQEVIALLKEQD 149 (160)
T ss_dssp EEEEE--S--HH-HHHHHHHHHHHH--SEEEEEE-----TTEEEEEES-HHHHHHHHHHHHHS-
T ss_pred EEEEeecccCHH-HHHHHHHHHHhcCCceeEEec-----CcEEEEecCCHHHHHHHHHHHHccc
Confidence 578899999863 34555555553 233566665 78899999887765 55666663
No 71
>COG1647 Esterase/lipase [General function prediction only]
Probab=35.41 E-value=91 Score=24.73 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=47.8
Q ss_pred cCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCC--eEEEEcCc---hhHHH---HHHHHhCCCCCCCCeE
Q 033744 38 NGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLG--KVIQLQGD---HRKNV---MIFLVKSKIVDKDRIK 108 (112)
Q Consensus 38 ~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g--~~I~lQGD---~~~~i---~~~L~~~G~~~~~~I~ 108 (112)
.|++-|-.+.|+.. .-|.+.|++.|... +-.+++-..|++| .+..++=. +-+++ .+.|.++|+ +.|.
T Consensus 13 ~G~~AVLllHGFTGt~~Dvr~Lgr~L~e~-GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy---~eI~ 88 (243)
T COG1647 13 GGNRAVLLLHGFTGTPRDVRMLGRYLNEN-GYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGY---DEIA 88 (243)
T ss_pred cCCEEEEEEeccCCCcHHHHHHHHHHHHC-CceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCC---CeEE
Confidence 46689999999999 88999999999988 5555555556665 23334433 33333 346777788 4576
Q ss_pred Ecc
Q 033744 109 IHG 111 (112)
Q Consensus 109 ihg 111 (112)
|.|
T Consensus 89 v~G 91 (243)
T COG1647 89 VVG 91 (243)
T ss_pred EEe
Confidence 666
No 72
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=34.71 E-value=44 Score=22.12 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHhhHhccCcEEEecCCCCe--EEEEcCc-hhHHHHHHHHhCCCCCCCCe
Q 033744 61 DLKKEFCCNGNVVNDKVLGK--VIQLQGD-HRKNVMIFLVKSKIVDKDRI 107 (112)
Q Consensus 61 ~lKk~~acggsv~~~p~~g~--~I~lQGD-~~~~i~~~L~~~G~~~~~~I 107 (112)
.|+-.|-++|||. +|..+. +|...-+ ..+.+.++|.+.|+ +...+
T Consensus 4 flrG~Fl~~Gsi~-~P~~~YhLEi~~~~~e~a~~l~~lL~~~~i-~~k~~ 51 (93)
T PF14527_consen 4 FLRGAFLACGSIS-DPKKSYHLEIRFNDEEFAEQLKELLNKFGI-NAKII 51 (93)
T ss_dssp HHHHHHHHHEEE---TTT---EEEEES-HHHHHHHHHHHHHH-----EEE
T ss_pred HHHHHHHCCeecc-CCCCceEEEEecCCHHHHHHHHHHHHHcCC-Cceee
Confidence 4667788888886 676553 3444433 55666677776677 54433
No 73
>cd00105 KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
Probab=33.65 E-value=98 Score=17.78 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=24.8
Q ss_pred HHHHHhhHhccCcEEEecC--CCCeEEEEcCchhHHHHHH
Q 033744 58 ILKDLKKEFCCNGNVVNDK--VLGKVIQLQGDHRKNVMIF 95 (112)
Q Consensus 58 lak~lKk~~acggsv~~~p--~~g~~I~lQGD~~~~i~~~ 95 (112)
..+.++.+++|.-.+.+.. .....|.+.|. .+.+...
T Consensus 21 ~i~~I~~~s~~~I~i~~~~~~~~~~~v~i~G~-~~~v~~a 59 (64)
T cd00105 21 TIKEIREETGAKIKIPDSGSGSEERIVTITGT-PEAVEKA 59 (64)
T ss_pred HHHHHHHHHCCEEEEcCCCCCCCceEEEEEcC-HHHHHHH
Confidence 3567788888888886433 23467999999 3455444
No 74
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=33.41 E-value=25 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+.|+++|...|+ ++++|.+.||
T Consensus 125 RA~aV~~~L~~~Gv-~~~ri~~~g~ 148 (173)
T PRK10802 125 RANAVKMYLQGKGV-SADQISIVSY 148 (173)
T ss_pred HHHHHHHHHHHcCC-CHHHeEEEEe
Confidence 45779999999998 8889988775
No 75
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=32.11 E-value=1.1e+02 Score=19.25 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=22.0
Q ss_pred chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 52 DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 52 ~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.+|.+.+..-+.=...||..+ +|.++|+.-+...+.|.+
T Consensus 41 ~vdakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~ 79 (84)
T PF00381_consen 41 TVDAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAE 79 (84)
T ss_dssp EEETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHH
T ss_pred eEecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 344444444444334444444 478899987777666653
No 76
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=31.72 E-value=49 Score=24.05 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHhhHhccCcEEEecCCC-C---eEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 55 YQKILKDLKKEFCCNGNVVNDKVL-G---KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 55 lk~lak~lKk~~acggsv~~~p~~-g---~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|+.+++.|++.=.-.-.|.-+.+. | ....|.=---+.|+++|...|+ +...|.+.|+
T Consensus 102 L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv-~~~~i~~~G~ 162 (190)
T COG2885 102 LDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGV-VADRISTVGY 162 (190)
T ss_pred HHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCC-CcccEEEEEc
Confidence 667777777544333333222111 1 1222322345679999999999 5558988875
No 77
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=31.07 E-value=34 Score=21.77 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=18.3
Q ss_pred hHHHHHHHHhCCCCCCCCeEEccC
Q 033744 89 RKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 89 ~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.+.|+++|.+.|+ +.+.|.+.|+
T Consensus 59 A~~v~~~L~~~g~-~~~~i~~~~~ 81 (106)
T cd07185 59 AEAVADYLVSKGV-DASRITAVGY 81 (106)
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 4678899999998 6668888763
No 78
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=29.95 E-value=32 Score=23.74 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 88 HRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 88 ~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-...|+++|.+.|+ +++.|.+.|+
T Consensus 89 RA~aV~~~L~~~Gi-~~~ri~~~g~ 112 (137)
T TIGR03350 89 RAKAVADVLAQGGV-PAGRVRAEGR 112 (137)
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 36789999999998 8888888774
No 79
>PRK12866 YciI-like protein; Reviewed
Probab=29.91 E-value=1.2e+02 Score=20.19 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=26.8
Q ss_pred hccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCC
Q 033744 66 FCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVD 103 (112)
Q Consensus 66 ~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~ 103 (112)
+-++|... +|..|..+.++.+-++.+.++|...=|..
T Consensus 37 ll~aGp~~-~~~~G~~ii~~a~s~~e~~~~l~~DPf~~ 73 (97)
T PRK12866 37 LLLAGALA-DPADGAVLVFEGDSPAAAEAFARADPYVR 73 (97)
T ss_pred EEEeCCCC-CCCCcEEEEEEeCCHHHHHHHHHcCChhh
Confidence 44444443 34456788899999999999999986534
No 80
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=29.46 E-value=86 Score=20.45 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCeeEEEEecCCCchhHHHHHHHHhhHhcc
Q 033744 39 GKKCLTTVQGLKEDFGYQKILKDLKKEFCC 68 (112)
Q Consensus 39 grK~VT~V~GL~~~~dlk~lak~lKk~~ac 68 (112)
.++.+|+---=+..+|+..|++.|.+.|.|
T Consensus 52 D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 52 DGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred CCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 334555544334489999999999999987
No 81
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=28.85 E-value=1.7e+02 Score=19.17 Aligned_cols=39 Identities=5% Similarity=0.144 Sum_probs=26.6
Q ss_pred chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 52 DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 52 ~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.+|.+.+..-+.--..||..| +|.+.|+--++..+.|.+
T Consensus 43 ~~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~ 81 (90)
T PRK10897 43 EAEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIA 81 (90)
T ss_pred EEchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 467777777777666666666 488899877665555544
No 82
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=28.65 E-value=40 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=21.2
Q ss_pred eEEEEcCchh-HHHHHHHHhCCCCCCCCeEE
Q 033744 80 KVIQLQGDHR-KNVMIFLVKSKIVDKDRIKI 109 (112)
Q Consensus 80 ~~I~lQGD~~-~~i~~~L~~~G~~~~~~I~i 109 (112)
+.|=||=|.. +.|++-|.+.|+ |++.|..
T Consensus 66 gKIWIq~d~TE~gIa~eLve~GV-pk~dIVL 95 (111)
T PF08869_consen 66 GKIWIQRDGTEDGIAEELVEAGV-PKEDIVL 95 (111)
T ss_dssp TEEEEEEESSSSHHHHHHHHTT---GGGEEE
T ss_pred CeEEEEcCchhhHHHHHHHHcCC-CHHHEEE
Confidence 3577777754 579999999999 9999875
No 83
>PTZ00423 glideosome-associated protein 45; Provisional
Probab=28.01 E-value=44 Score=25.05 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHhhHhccCcEE
Q 033744 55 YQKILKDLKKEFCCNGNV 72 (112)
Q Consensus 55 lk~lak~lKk~~acggsv 72 (112)
+.+.||.|.++|||+-.-
T Consensus 154 ~DEtAk~~s~RCGcdLg~ 171 (193)
T PTZ00423 154 LDETAKVFSRRCGCDLGE 171 (193)
T ss_pred HHHHHHHHHHhhCCCCCc
Confidence 678999999999998544
No 84
>KOG4616 consensus Mitochondrial ribosomal protein L55 [Translation, ribosomal structure and biogenesis]
Probab=27.46 E-value=26 Score=24.95 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=26.9
Q ss_pred EEEEecCCeeEEEEecCCCchhHHHHHHHHh
Q 033744 33 RVQQRNGKKCLTTVQGLKEDFGYQKILKDLK 63 (112)
Q Consensus 33 ~~~~R~grK~VT~V~GL~~~~dlk~lak~lK 63 (112)
|+.-|+.++.||+.+-+++.+|-++-.|.++
T Consensus 98 rlaarkpkaki~~~e~idd~fd~~eymkf~~ 128 (137)
T KOG4616|consen 98 RLAARKPKAKIKIMEEIDDNFDAKEYMKFIK 128 (137)
T ss_pred HHhhcCccccceehhhhhcccCHHHHHHHHh
Confidence 4556888899999999999999999998887
No 85
>PF15538 Toxin_61: Putative toxin 61
Probab=26.66 E-value=56 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=30.9
Q ss_pred HHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCCCCC
Q 033744 61 DLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDR 106 (112)
Q Consensus 61 ~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~ 106 (112)
.|-++||-+|.+. ..|-|.|+ ++...+|+.+.|| +++.
T Consensus 4 yln~kfgrtg~l~------~dinirgn-~e~a~~F~~s~G~-~~~~ 41 (157)
T PF15538_consen 4 YLNEKFGRTGDLN------HDINIRGN-REIASDFFKSQGL-TEAD 41 (157)
T ss_pred Hhhhhhccccccc------cceeeccc-hHHHHHHHHHcCC-CHHH
Confidence 4678999999995 56999997 5778899999999 5543
No 86
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=26.25 E-value=58 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCeeEEEEecCCC-chhHHHHHHHHhhHhc
Q 033744 39 GKKCLTTVQGLKE-DFGYQKILKDLKKEFC 67 (112)
Q Consensus 39 grK~VT~V~GL~~-~~dlk~lak~lKk~~a 67 (112)
-++.||+|+||.. ...|.-+-++|....+
T Consensus 68 ~G~~ItTiEGl~~~~~~l~~vQ~Af~e~~~ 97 (156)
T COG2080 68 EGAEITTIEGLAKKDGGLHPVQQAFLEHDA 97 (156)
T ss_pred CCCeEEEeecccCCCCCcCHHHHHHHHcCC
Confidence 3578999999996 6677777788877654
No 87
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=26.07 E-value=1.2e+02 Score=20.59 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.0
Q ss_pred CceEEEEEEEecCCeeEEEE
Q 033744 27 KGYVHLRVQQRNGKKCLTTV 46 (112)
Q Consensus 27 ~~~I~I~~~~R~grK~VT~V 46 (112)
.+.+.+..-.|=.+|+||+|
T Consensus 76 ~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 76 DGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp TTEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEEecceEEEEE
Confidence 34667777888899999998
No 88
>PF13014 KH_3: KH domain
Probab=25.96 E-value=1.1e+02 Score=16.77 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=18.6
Q ss_pred HHHHhhHhccCcEEEec--C-CCCeEEEEcC
Q 033744 59 LKDLKKEFCCNGNVVND--K-VLGKVIQLQG 86 (112)
Q Consensus 59 ak~lKk~~acggsv~~~--p-~~g~~I~lQG 86 (112)
.+.|++.++|.-.+.+. + .....|.|.|
T Consensus 13 I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 13 IKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred HHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 57778888888777651 1 2246788876
No 89
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=25.77 E-value=44 Score=26.16 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhhHhccCcEEEecCCC-C---eEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 53 FGYQKILKDLKKEFCCNGNVVNDKVL-G---KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 53 ~dlk~lak~lKk~~acggsv~~~p~~-g---~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
-.+..++..|+..=...-.|.-+.+. | ....|.=.-.+.|+++|.+.|+ +++.|.+.||
T Consensus 152 ~~L~~iA~~Lk~~p~~~V~I~GHTD~~Gs~~~N~~LS~~RA~aV~~yLv~~GI-~~~RI~~~G~ 214 (239)
T TIGR03789 152 PQLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGV-DEARLTTQAF 214 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCCCCCChhhHHHHHHHHHHHHHHHHHHcCC-CHHHEEEEEe
Confidence 35778888887532222223211110 1 0122222334679999999999 8888988775
No 90
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=25.42 E-value=18 Score=25.55 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEEecCCeeEEEEecCCCchhHHHHHHHHhh
Q 033744 34 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKK 64 (112)
Q Consensus 34 ~~~R~grK~VT~V~GL~~~~dlk~lak~lKk 64 (112)
..+|..++.++...-+++.+|.++-.+.|||
T Consensus 86 l~kR~pk~k~~~~~e~eD~Fd~~~Y~~fwkK 116 (116)
T PF09776_consen 86 LRKRKPKKKIKIEEELEDDFDAEKYKKFWKK 116 (116)
T ss_pred HHHhCCccccccchhhcccCCHHHHHHHhhC
Confidence 3456666667777778778888887777765
No 91
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=25.04 E-value=1.6e+02 Score=18.11 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhHhcc-CcEEEecCCCCeEEEEcCchhHH
Q 033744 53 FGYQKILKDLKKEFCC-NGNVVNDKVLGKVIQLQGDHRKN 91 (112)
Q Consensus 53 ~dlk~lak~lKk~~ac-ggsv~~~p~~g~~I~lQGD~~~~ 91 (112)
-++.++++.+++.++| +..+...+..|..|+|--+....
T Consensus 18 ~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~ 57 (92)
T PF05190_consen 18 EELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKK 57 (92)
T ss_dssp HHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGG
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEcccccc
Confidence 3588899999999999 77777777778888887776443
No 92
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=24.03 E-value=4e+02 Score=21.79 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEE---------EcCchhHHHHHHHHhCCCCCCCCeE
Q 033744 39 GKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQ---------LQGDHRKNVMIFLVKSKIVDKDRIK 108 (112)
Q Consensus 39 grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~---------lQGD~~~~i~~~L~~~G~~~~~~I~ 108 (112)
++..|-.|.|+.. ......++..|.+. +..-..+.|+.|..=- =-.++.+.+.++|...++ ++-.+.
T Consensus 126 ~~~~ivllHG~~~~~~~w~~~~~~L~~~--~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l~~-~~~~Lv 202 (383)
T PLN03084 126 NNPPVLLIHGFPSQAYSYRKVLPVLSKN--YHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDELKS-DKVSLV 202 (383)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcC--CEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHhCC-CCceEE
Confidence 3578999999988 66788888888764 3445556677652100 012466788888888887 555555
Q ss_pred EccC
Q 033744 109 IHGF 112 (112)
Q Consensus 109 ihg~ 112 (112)
.||+
T Consensus 203 G~s~ 206 (383)
T PLN03084 203 VQGY 206 (383)
T ss_pred EECH
Confidence 5653
No 93
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=23.19 E-value=2.4e+02 Score=19.52 Aligned_cols=41 Identities=27% Similarity=0.458 Sum_probs=29.2
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-c--hh-HHHHHHHHhh
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-D--FG-YQKILKDLKK 64 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~--~d-lk~lak~lKk 64 (112)
.|....|.|++.-..+...-++|+|... . .| ++++.++|++
T Consensus 12 ~G~fKYvLi~v~~~~~~~~k~iVRG~~~~~yH~di~d~~~~el~~ 56 (108)
T PF05005_consen 12 EGVFKYVLIRVTDHGSGESKYIVRGYKRAEYHADIYDEVQEELEK 56 (108)
T ss_dssp SSEEEEEEEEEES-G---EEEEEEEETT-SSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEeCCCCEEEEEEECCcchhhHHHHHHHHHHHHHH
Confidence 5778899999987668888999999985 3 23 7777777776
No 94
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=23.11 E-value=2.5e+02 Score=18.98 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=36.9
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEec--------------CCCCeEEEEcCchhHHHHHHHHhCCCCCC
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVND--------------KVLGKVIQLQGDHRKNVMIFLVKSKIVDK 104 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~--------------p~~g~~I~lQGD~~~~i~~~L~~~G~~~~ 104 (112)
-+|-|++.. +...+++.|++ ||.-+... |.++.+|.|+=|.+....+.|.+.|.+-.
T Consensus 9 VtVFGfp~~-~~~~Vl~~F~~---~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 9 VTVFGFPPS-ASNQVLRHFSS---FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp EEEE---GG-GHHHHHHHHHC---CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred EEEEccCHH-HHHHHHHHHHh---cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 356788864 55666666663 55544432 35678999999999999999999986333
No 95
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.05 E-value=1.7e+02 Score=23.27 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHhhHhccCcEEEecCCCCeEEEEc--CchhHHHHHHHHhCCCCCCCCeEEcc
Q 033744 55 YQKILKDLKKEFCCNGNVVNDKVLGKVIQLQ--GDHRKNVMIFLVKSKIVDKDRIKIHG 111 (112)
Q Consensus 55 lk~lak~lKk~~acggsv~~~p~~g~~I~lQ--GD~~~~i~~~L~~~G~~~~~~I~ihg 111 (112)
+.++++.+++.+..--|++- -+-.- -+...++...|.+.|+ +.|.|||
T Consensus 110 ~~~iv~~~~~~~~~pvsvKi------R~g~~~~~~~~~~~~~~l~~~G~---~~i~vH~ 159 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPVSVKI------RLGWDDSPEETIEFARILEDAGV---SAITVHG 159 (309)
T ss_dssp HHHHHHHHHHH-SSEEEEEE------ESECT--CHHHHHHHHHHHHTT-----EEEEEC
T ss_pred hhHHHHhhhcccccceEEec------ccccccchhHHHHHHHHhhhccc---ceEEEec
Confidence 66777888877776666641 12222 2235677788888886 8899998
No 96
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=22.90 E-value=57 Score=21.36 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=26.2
Q ss_pred HhhHhccCcEEEecCCCCeEEEEcC-chhHHHHHHHHhCCCCC
Q 033744 62 LKKEFCCNGNVVNDKVLGKVIQLQG-DHRKNVMIFLVKSKIVD 103 (112)
Q Consensus 62 lKk~~acggsv~~~p~~g~~I~lQG-D~~~~i~~~L~~~G~~~ 103 (112)
+-...|++++.. |......| -..++..++|.+.|+.|
T Consensus 56 ~~~~sg~n~~~~-----G~ylt~~g~~~~~~d~~~i~~lG~~P 93 (93)
T PF06968_consen 56 LTFMSGANSIMV-----GGYLTTSGNRSVDEDIEMIEKLGLEP 93 (93)
T ss_dssp HHHCCT--EEE------CSBTSSSCTSHHHHHHHHHHHTT-ES
T ss_pred HHHhcccceeEE-----CCccccCCCCCHHHHHHHHHHcCCCC
Confidence 445666777776 66788899 79999999999999843
No 97
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.63 E-value=71 Score=18.50 Aligned_cols=17 Identities=6% Similarity=0.216 Sum_probs=13.0
Q ss_pred chhHHHHHHHHhhHhcc
Q 033744 52 DFGYQKILKDLKKEFCC 68 (112)
Q Consensus 52 ~~dlk~lak~lKk~~ac 68 (112)
.-||+++.+.|.++++-
T Consensus 20 PPDLdel~r~l~~kl~~ 36 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGG 36 (42)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 56888888888888753
No 98
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=22.61 E-value=2.9e+02 Score=20.76 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHH
Q 033744 49 LKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIF 95 (112)
Q Consensus 49 L~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~ 95 (112)
+.+..+..++++.+.+.....=...+..+.+-.|++||+.. .|++.
T Consensus 5 ~~~~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~~-eike~ 50 (190)
T PF09840_consen 5 FRDDEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYEK-EIKEA 50 (190)
T ss_pred cCChHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecChH-HHHHH
Confidence 34456788888888777333222122223345899999987 44443
No 99
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=22.15 E-value=2.2e+02 Score=21.98 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=42.9
Q ss_pred CCCCCCcCCcCCC----CCCCCceEEEEEEEec----CCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCC--
Q 033744 10 TSYDPFADIKDSL----APGDKGYVHLRVQQRN----GKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLG-- 79 (112)
Q Consensus 10 ~~~dpf~~~~~~~----~~~~~~~I~I~~~~R~----grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g-- 79 (112)
..||||.....-. .-...+.-.|..+... ++|.|++++=+-.--|+++++..-=..++-++-+.-+.+.+
T Consensus 81 lg~Dvf~Sr~~i~~l~k~~s~~~~y~i~~~~~~k~~~~g~~v~v~~~~v~~~dv~~~l~~rle~l~~~~~L~~~~~t~d~ 160 (224)
T PF06918_consen 81 LGFDVFPSRKSIDELEKKVSSIDDYEISTEKITKKTGSGKEVTVVTCVVSIKDVEKLLSRRLEQLSKSGKLIFDDGTGDE 160 (224)
T ss_pred CCCCCCCCHHHHHHHHHhcCcccceEEEEEEccccCCCCeEEEEEEEEEEecCHHHHHHHHHHHHHHcCCceeCCCCCCC
Confidence 4789997733222 1223444555555433 46888888755333366666555555666555555443222
Q ss_pred eEEEEcCch
Q 033744 80 KVIQLQGDH 88 (112)
Q Consensus 80 ~~I~lQGD~ 88 (112)
=+|-|-||.
T Consensus 161 I~l~igGDk 169 (224)
T PF06918_consen 161 IWLGIGGDK 169 (224)
T ss_pred EEEEEcccC
Confidence 255666775
No 100
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=22.05 E-value=3.3e+02 Score=22.28 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=43.7
Q ss_pred chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHhCCCCCCCCeEEc
Q 033744 52 DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 52 ~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
..+.+++++.++.-+.-.|++.-++..+ .+.+.|. ..+++.++|.+.-. |..+|.|.
T Consensus 100 ya~A~el~~~l~~ll~~~g~v~~d~~tN-sLiv~~~~~~~~~i~~li~~lD~-~~~QV~Ie 158 (386)
T PRK10560 100 YADAGELAKAGEKLLSAKGSMTVDKRTN-RLLLRDNKTALSALEQWVAQMDL-PVGQVELA 158 (386)
T ss_pred CCCHHHHHhhhcccccCCcEEEEEcCCC-EEEEEcCHHHHHHHHHHHHHhCC-CCceEEEE
Confidence 4578888888888888888887655444 6888886 77889999988876 77777764
No 101
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=21.73 E-value=71 Score=24.34 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhHhccCcEEEecCCC-C---eEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 54 GYQKILKDLKKEFCCNGNVVNDKVL-G---KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 54 dlk~lak~lKk~~acggsv~~~p~~-g---~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
.|.+++..|++.=...-.|.-+.+. | ....|.-.-.+.|+++|...|+ +++.|.+.||
T Consensus 130 ~L~~ia~~L~~~p~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi-~~~ri~~~G~ 191 (219)
T PRK10510 130 TLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGV-DASRIRTQGM 191 (219)
T ss_pred HHHHHHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHcCC-ChhhEEEEEE
Confidence 3677777776543222222211110 0 1122233345789999999999 8888988775
No 102
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.63 E-value=1.9e+02 Score=17.05 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=26.1
Q ss_pred cCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch---hHHHHHHHHhCCC
Q 033744 48 GLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH---RKNVMIFLVKSKI 101 (112)
Q Consensus 48 GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~---~~~i~~~L~~~G~ 101 (112)
|+.-...+-++.++|++ ..- |+.++|--|+ ...|..++...|+
T Consensus 6 g~~CP~Pl~~~~~~l~~-l~~----------g~~l~v~~d~~~~~~~i~~~~~~~g~ 51 (69)
T cd00291 6 GLPCPLPVLKTKKALEK-LKS----------GEVLEVLLDDPGAVEDIPAWAKETGH 51 (69)
T ss_pred CCcCCHHHHHHHHHHhc-CCC----------CCEEEEEecCCcHHHHHHHHHHHcCC
Confidence 44334455566666665 111 3445555444 7899999999988
No 103
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=21.45 E-value=3.3e+02 Score=20.94 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=37.3
Q ss_pred CCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcC-----chhHHHHHHHHhCCC
Q 033744 39 GKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQG-----DHRKNVMIFLVKSKI 101 (112)
Q Consensus 39 grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQG-----D~~~~i~~~L~~~G~ 101 (112)
|+...+++-.+ ..|+.++.++|++++.-+...... ..-.|.+.+ .....|.++|.+.|+
T Consensus 15 g~~~~~~~L~~--~~~~~~l~~~L~~kl~~a~~FF~~--apvvld~~~~~~~~~~~~~L~~~l~~~gl 78 (239)
T PRK05177 15 GRSFLAVVLSP--EAPLDDWLARLDALIARSPGFFLG--RPVVLDLAGLAIERSQLAALLAELEARGI 78 (239)
T ss_pred CCceEEEEEeC--CCCHHHHHHHHHHHHHhChhhhCC--CeEEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444433 578899999999998766544321 112455555 356778888887776
No 104
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.38 E-value=1.3e+02 Score=17.69 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=16.7
Q ss_pred EEEEcC-chhHHHHHHHHhCCC
Q 033744 81 VIQLQG-DHRKNVMIFLVKSKI 101 (112)
Q Consensus 81 ~I~lQG-D~~~~i~~~L~~~G~ 101 (112)
.+.++. ++.+++.+.|.+.||
T Consensus 46 ~i~v~~~~~~~~~~~~L~~~G~ 67 (69)
T cd04909 46 RISFKTQEDRERAKEILKEAGY 67 (69)
T ss_pred EEEECCHHHHHHHHHHHHHcCC
Confidence 455654 488999999999998
No 105
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=21.21 E-value=1.2e+02 Score=19.08 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=18.6
Q ss_pred EEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHh
Q 033744 32 LRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEF 66 (112)
Q Consensus 32 I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~ 66 (112)
|.+.+|+|++ ..+|+.++.+.+.+.|
T Consensus 1 i~ViKrdG~~---------e~F~~~KI~~~i~~a~ 26 (90)
T PF03477_consen 1 IKVIKRDGRV---------EPFDREKIVRAIEKAC 26 (90)
T ss_dssp -EEEESSSSE---------EES-HHHHHHHHHTTC
T ss_pred CEEEeCCCcE---------eeecHHHHHHHHHHHH
Confidence 4566777743 2789999999999888
No 106
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=21.18 E-value=1.7e+02 Score=23.33 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHhhHhccCcEEEecCCC--CeEEEEcCchhHHHHHHHHhCCCCCCC
Q 033744 49 LKEDFGYQKILKDLKKEFCCNGNVVNDKVL--GKVIQLQGDHRKNVMIFLVKSKIVDKD 105 (112)
Q Consensus 49 L~~~~dlk~lak~lKk~~acggsv~~~p~~--g~~I~lQGD~~~~i~~~L~~~G~~~~~ 105 (112)
|...++.++++..|....-|+.-|....+. | .-.=+....+++.++|..+.| |++
T Consensus 22 L~~~l~y~~ma~~ladVi~~N~~iis~kGklLG-y~~~~~~~~dr~~q~~~~r~f-Pde 78 (261)
T COG4465 22 LQKPLPYNEMAETLADVIECNAFIISRKGKLLG-YSFNYKTNNDRVKQMFEDRKF-PDE 78 (261)
T ss_pred ccCcccHHHHHHHHHHHhhcceEEEeCCCceec-cccccccchHHHHHHHHHhcC-CHH
Confidence 555789999999999999999999854332 2 234567779999999998888 765
No 107
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.16 E-value=1.2e+02 Score=22.94 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=33.6
Q ss_pred chhHHHHHHHHhhH--h---ccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 52 DFGYQKILKDLKKE--F---CCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 52 ~~dlk~lak~lKk~--~---acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
.+.++++.+.+++. | +|||-+.- |+|=.+|-+....+.+.+.+.|+
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~S----GGEPllq~~fl~~l~~~~k~~gi 68 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLS----GGEVLMQAEFATRFLQRLRLWGV 68 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEe----CchHHcCHHHHHHHHHHHHHcCC
Confidence 35677888877765 2 55665543 67788899888888888888876
No 108
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.13 E-value=1.4e+02 Score=17.52 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.4
Q ss_pred EEEEcCchhHHHHHHHHhCCC
Q 033744 81 VIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 81 ~I~lQGD~~~~i~~~L~~~G~ 101 (112)
.|.+.++-.+.+.+.|.+.||
T Consensus 46 ~i~v~~~~~~~~~~~L~~~G~ 66 (72)
T cd04883 46 VFRVQTMNPRPIIEDLRRAGY 66 (72)
T ss_pred EEEEecCCHHHHHHHHHHCCC
Confidence 677778888899999999998
No 109
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=20.77 E-value=2.1e+02 Score=17.34 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=30.1
Q ss_pred chhHHHHHHHHhhHhc--------------------cCcEEEecCCCCeEEEEcCc--hhHHHHHHHHh
Q 033744 52 DFGYQKILKDLKKEFC--------------------CNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVK 98 (112)
Q Consensus 52 ~~dlk~lak~lKk~~a--------------------cggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~ 98 (112)
..+.+++++.|+.-|+ -+++|.-++..+ .|.|.|. ..+.|.+++..
T Consensus 8 ~~~A~~v~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~tN-sliv~g~~~~~~~i~~li~~ 75 (82)
T PF03958_consen 8 YASAEEVASVLQQLLGGGSGSSSGSGGSSGSGSSGSSSGRIVADERTN-SLIVRGTPEDLEQIRELIKQ 75 (82)
T ss_dssp SS-HHHHHHHHHHHH----------------S-HHHTTTEEEEECTTT-EEEEEEEHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhhhcccccccccccccccCCCCCeEEEEECCCC-EEEEEeCHHHHHHHHHHHHH
Confidence 4567888888888883 556666554444 6788887 55667776654
No 110
>PF12229 PG_binding_4: Putative peptidoglycan binding domain; InterPro: IPR022029 This domain is found associated with the L,D-transpeptidase domain PF03734 from PFAM. The structure of this domain has been solved and shows a mixed alpha-beta fold composed of nine beta strands and four alpha helices. This domain is usually found to be duplicated. Therefore, it seems likely that this domain acts to bind the two unlinked peptidoglycan chains and bring them into close association so they can be cross linked by the transpeptidase domain. ; PDB: 2HKL_C 1ZAT_A.
Probab=20.71 E-value=2.3e+02 Score=17.81 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=21.6
Q ss_pred CCeeEEEEecCCC-chhHHHHHHHHhhHhccC
Q 033744 39 GKKCLTTVQGLKE-DFGYQKILKDLKKEFCCN 69 (112)
Q Consensus 39 grK~VT~V~GL~~-~~dlk~lak~lKk~~acg 69 (112)
.++.++++.|-.. .+|.++++..+.+.+..+
T Consensus 78 ~~~~~~i~~~~~G~~id~~~~~~~i~~al~~~ 109 (114)
T PF12229_consen 78 DGGTFTITPGQYGWKIDVDKLAEAIKKALKNG 109 (114)
T ss_dssp SSCEEEE---SS-EEE-HHHHHHHHHHHHHTT
T ss_pred eCCEEEEcCCcCeEEEcHHHHHHHHHHHHHcC
Confidence 3456888899988 899999999999988766
No 111
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.70 E-value=1.5e+02 Score=16.85 Aligned_cols=20 Identities=5% Similarity=0.194 Sum_probs=15.2
Q ss_pred EEEcCchhHHHHHHHHhCCC
Q 033744 82 IQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 82 I~lQGD~~~~i~~~L~~~G~ 101 (112)
+.+.=|..+.+.+.|.+.||
T Consensus 43 v~~~ve~~~~~~~~L~~~G~ 62 (65)
T cd04882 43 LIFRTEDIEKAIEVLQERGV 62 (65)
T ss_pred EEEEeCCHHHHHHHHHHCCc
Confidence 44443348999999999998
No 112
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=20.57 E-value=1.6e+02 Score=22.45 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=35.9
Q ss_pred cCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCC--CCeEEEEcCc
Q 033744 38 NGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKV--LGKVIQLQGD 87 (112)
Q Consensus 38 ~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~--~g~~I~lQGD 87 (112)
...+.+|+|+|.-..--++.+++.|.+.-++...|..-+. -|+.|-|-|=
T Consensus 95 ~~~~~v~ivTG~la~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGL 146 (204)
T PF04459_consen 95 KKPRRVTIVTGVLAYPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGL 146 (204)
T ss_pred CCCeeEEEEeeHHHHHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeC
Confidence 5668999999987655688888888655566666654443 2667777774
No 113
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=20.50 E-value=2.8e+02 Score=21.70 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=35.7
Q ss_pred EecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEE--ecCC--CCeEEEE
Q 033744 36 QRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVV--NDKV--LGKVIQL 84 (112)
Q Consensus 36 ~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~--~~p~--~g~~I~l 84 (112)
.++|...+++.+-.+. +-..+++...|+++++..-.+. -+|. +|-.|.+
T Consensus 196 ~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~~V~l~~~VDpsLIGGivI~v 249 (271)
T PRK13430 196 ARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRPVHLNSEVDPSVLGGMRVQV 249 (271)
T ss_pred HHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCCceEEEeeECccccCcEEEEE
Confidence 3567788899988888 7789999999999998765543 2343 3545555
No 114
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=20.39 E-value=3.5e+02 Score=21.65 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHH
Q 033744 39 GKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLV 97 (112)
Q Consensus 39 grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~ 97 (112)
.++.+.+|.|-.+ -+.++ .+..++++. -+..+..-++.|.-.++ +.-+.+..+|.
T Consensus 263 ~~~pvlii~G~~D~~~p~~-~~~~~~~~~-pn~~~~~I~~~gH~~h~--e~Pe~~~~~i~ 318 (326)
T KOG1454|consen 263 WKCPVLIIWGDKDQIVPLE-LAEELKKKL-PNAELVEIPGAGHLPHL--ERPEEVAALLR 318 (326)
T ss_pred cCCceEEEEcCcCCccCHH-HHHHHHhhC-CCceEEEeCCCCccccc--CCHHHHHHHHH
Confidence 4478999999999 44555 889999988 77777766666654454 55555555544
No 115
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=20.35 E-value=2.4e+02 Score=20.57 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=34.8
Q ss_pred ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEE--ecCC--CCeEEEEcC
Q 033744 37 RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVV--NDKV--LGKVIQLQG 86 (112)
Q Consensus 37 R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~--~~p~--~g~~I~lQG 86 (112)
++|...+++.+-.+. +-..+++.+.|++++++.-.+. -+|. +|-.|++..
T Consensus 101 ~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g~~v~l~~~vDpsLIGG~ii~igd 155 (184)
T PRK13434 101 KKGRVRAQIVSYPSLEPAQVDKLGSILSEKFKSEFILEVSEDKNLLGGFVVQFND 155 (184)
T ss_pred HcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHCCEeEEEeeeChHHcCceEEEECC
Confidence 456778888888777 6679999999999998755443 2342 454555543
Done!